gi|00000000|ref|ACHG00000000.1|  Lactobacillus reuteri CF48-3A, whole genome shotgun sequencing 2032595, gc%: 38.72%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
38337..38348                       attL                                                                                 N/A                 AACAGCAACTTG
complement(38527..39792)           PHAGE_Lactob_phiPYB5_NC_027982: putative integrase; HMPREF0534_0040; phage(gi937456185)     6.36e-119           [LactobacillusreuteriCF48-3A]
complement(40064..40831)           PHAGE_Lactob_Lj965_NC_005355: hypothetical protein; HMPREF0534_0041; phage(gi41179221)     1.99e-21            [LactobacillusreuteriCF48-3A]
complement(40867..41295)           hypothetical protein; HMPREF0534_0042                                                N/A                 [LactobacillusreuteriCF48-3A]
complement(41353..41874)           hypothetical protein; HMPREF0534_0043                                                N/A                 [LactobacillusreuteriCF48-3A]
complement(41923..42351)           PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; HMPREF0534_0044; phage(gi100035)     3.32e-23            [LactobacillusreuteriCF48-3A]
complement(42348..42656)           PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; HMPREF0534_0045; phage(gi100029)     3.80e-30            [LactobacillusreuteriCF48-3A]
42879..43085                       hypothetical protein; HMPREF0534_0046                                                N/A                 [LactobacillusreuteriCF48-3A]
43097..43864                       PHAGE_Lactob_Ldl1_NC_026609: antirepressor protein; HMPREF0534_0047; phage(gi764162130)     1.61e-110           [LactobacillusreuteriCF48-3A]
43876..44004                       hypothetical protein; HMPREF0534_0048                                                N/A                 [LactobacillusreuteriCF48-3A]
44004..44126                       hypothetical protein; HMPREF0534_0049                                                N/A                 [LactobacillusreuteriCF48-3A]
44141..44347                       hypothetical protein; HMPREF0534_0050                                                N/A                 [LactobacillusreuteriCF48-3A]
44344..44523                       hypothetical protein; HMPREF0534_0051                                                N/A                 [LactobacillusreuteriCF48-3A]
44559..44789                       hypothetical protein; HMPREF0534_0052                                                N/A                 [LactobacillusreuteriCF48-3A]
44782..45054                       hypothetical protein; HMPREF0534_0053                                                N/A                 [LactobacillusreuteriCF48-3A]
45058..45810                       PHAGE_Lactob_LBR48_NC_027990: hypothetical protein; HMPREF0534_0054; phage(gi937456720)     2.47e-52            [LactobacillusreuteriCF48-3A]
45813..46493                       PHAGE_Lactob_CL1_NC_028888: hypothetical protein; HMPREF0534_0055; phage(gi971752656)     2.50e-63            [LactobacillusreuteriCF48-3A]
46483..46911                       PHAGE_Staphy_phiETA3_NC_008799: ssDNA-binding protein; HMPREF0534_0056; phage(gi122891801)     8.81e-31            [LactobacillusreuteriCF48-3A]
46924..47754                       PHAGE_Lactob_LF1_NC_019486: DNA replication protein; HMPREF0534_0057; phage(gi418489431)     5.91e-25            [LactobacillusreuteriCF48-3A]
47770..48567                       PHAGE_Lactob_LF1_NC_019486: DNA replication protein; HMPREF0534_0058; phage(gi418489432)     1.94e-51            [LactobacillusreuteriCF48-3A]
48726..48986                       hypothetical protein; HMPREF0534_0059                                                N/A                 [LactobacillusreuteriCF48-3A]
48976..49497                       hypothetical protein; HMPREF0534_0060                                                N/A                 [LactobacillusreuteriCF48-3A]
49510..50067                       PHAGE_Lactob_Ldl1_NC_026609: hypothetical protein; HMPREF0534_0061; phage(gi764162136)     7.94e-25            [LactobacillusreuteriCF48-3A]
50144..50593                       hypothetical protein; HMPREF0534_0062                                                N/A                 [LactobacillusreuteriCF48-3A]
50586..50864                       hypothetical protein; HMPREF0534_0063                                                N/A                 [LactobacillusreuteriCF48-3A]
50861..51205                       hypothetical protein; HMPREF0534_0064                                                N/A                 [LactobacillusreuteriCF48-3A]
51337..51579                       hypothetical protein; HMPREF0534_0065                                                N/A                 [LactobacillusreuteriCF48-3A]
51551..51934                       hypothetical protein; HMPREF0534_0066                                                N/A                 [LactobacillusreuteriCF48-3A]
52047..52241                       hypothetical protein; HMPREF0534_0067                                                N/A                 [LactobacillusreuteriCF48-3A]
52345..52488                       hypothetical protein; HMPREF0534_0068                                                N/A                 [LactobacillusreuteriCF48-3A]
52821..53336                       PHAGE_Lactob_LF1_NC_019486: phage transcriptional regulator; HMPREF0534_0069; phage(gi418489438)     1.06e-16            [LactobacillusreuteriCF48-3A]
53902..53981                       tRNA                                                                                 N/A                 GCTGATGTCGCTTAATGGTAAAGCACCACAGTTGTTTCCGTTTCAACATGGAGAAGGCGGTTCGATTCCGTCCGTCAGCA
54161..54640                       PHAGE_Lactoc_bIL311_NC_002670: Orf21; HMPREF0534_0070; phage(gi13095679)             5.60e-32            [LactobacillusreuteriCF48-3A]
54630..55064                       hypothetical protein; HMPREF0534_0071                                                N/A                 [LactobacillusreuteriCF48-3A]
55109..55255                       hypothetical protein; HMPREF0534_0072                                                N/A                 [LactobacillusreuteriCF48-3A]
55610..55789                       PHAGE_Lactob_JCL1032_NC_019456: hypothetical protein; HMPREF0534_0073; phage(gi418489174)     9.14e-12            [LactobacillusreuteriCF48-3A]
55782..56060                       hypothetical protein; HMPREF0534_0074                                                N/A                 [LactobacillusreuteriCF48-3A]
56304..56474                       PHAGE_Lactob_phiJB_NC_022775: hypothetical protein; HMPREF0534_0075; phage(gi571797856)     1.14e-11            [LactobacillusreuteriCF48-3A]
complement(56500..56739)           hypothetical protein; HMPREF0534_0076                                                N/A                 [LactobacillusreuteriCF48-3A]
56758..57552                       PHAGE_Lactob_LF1_NC_019486: HNH endonuclease domain protein; HMPREF0534_0077; phage(gi418489440)     3.75e-143           [LactobacillusreuteriCF48-3A]
57784..58203                       PHAGE_Lactob_LF1_NC_019486: phage terminase small subunit; HMPREF0534_0078; phage(gi418489384)     8.92e-53            [LactobacillusreuteriCF48-3A]
58200..59909                       PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; HMPREF0534_0079; phage(gi418489385)     0.0                 [LactobacillusreuteriCF48-3A]
59890..60252                       hypothetical protein; HMPREF0534_0080                                                N/A                 [LactobacillusreuteriCF48-3A]
60253..60408                       hypothetical protein; HMPREF0534_0081                                                N/A                 [LactobacillusreuteriCF48-3A]
60415..61674                       PHAGE_Lactob_LF1_NC_019486: bacteriophage portal protein; HMPREF0534_0082; phage(gi418489387)     0.0                 [LactobacillusreuteriCF48-3A]
61643..62266                       PHAGE_Lactob_LF1_NC_019486: phage head maturation protease; HMPREF0534_0083; phage(gi418489388)     4.17e-79            [LactobacillusreuteriCF48-3A]
62267..63403                       PHAGE_Lactob_LF1_NC_019486: phage capsid protein; HMPREF0534_0084; phage(gi418489389)     0.0                 [LactobacillusreuteriCF48-3A]
63545..63958                       PHAGE_Lactob_LF1_NC_019486: DNA packaging protein; HMPREF0534_0085; phage(gi418489390)     1.32e-41            [LactobacillusreuteriCF48-3A]
63969..64214                       PHAGE_Lactob_LF1_NC_019486: head-tail joining protein; HMPREF0534_0086; phage(gi418489391)     2.76e-31            [LactobacillusreuteriCF48-3A]
64198..64572                       PHAGE_Lactob_LF1_NC_019486: head-tail joining protein; HMPREF0534_0087; phage(gi418489392)     6.72e-51            [LactobacillusreuteriCF48-3A]
64569..64988                       PHAGE_Lactob_LF1_NC_019486: head-tail joining protein; HMPREF0534_0088; phage(gi418489393)     1.68e-52            [LactobacillusreuteriCF48-3A]
64988..65617                       PHAGE_Lactob_LF1_NC_019486: major tail protein; HMPREF0534_0089; phage(gi418489394)     2.65e-96            [LactobacillusreuteriCF48-3A]
65670..66011                       PHAGE_Lactob_LF1_NC_019486: hypothetical protein; HMPREF0534_0090; phage(gi418489395)     2.05e-22            [LactobacillusreuteriCF48-3A]
66020..66190                       PHAGE_Lactob_LF1_NC_019486: hypothetical protein; HMPREF0534_0091; phage(gi418489396)     2.55e-18            [LactobacillusreuteriCF48-3A]
66207..70709                       PHAGE_Lactob_LF1_NC_019486: phage tail tape measure protein; HMPREF0534_0092; phage(gi418489397)     0.0                 [LactobacillusreuteriCF48-3A]
70713..71555                       PHAGE_Lactob_LF1_NC_019486: hypothetical protein; HMPREF0534_0093; phage(gi418489398)     2.22e-114           [LactobacillusreuteriCF48-3A]
71630..74098                       PHAGE_Lactob_LF1_NC_019486: phage-associated protein/endopeptidase; HMPREF0534_0094; phage(gi418489399)     0.0                 [LactobacillusreuteriCF48-3A]
77442..77453                       attR                                                                                 N/A                 AACAGCAACTTG

#### region 2 ####
99158..99171                       attL                                                                                 N/A                 ATCACTTCCCTTAT
110315..110326                     attL                                                                                 N/A                 TCCTTAAAAATT
complement(113308..113820)         PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0534_0141; phage(gi588498272)     1.25e-41            [LactobacillusreuteriCF48-3A]
113821..114044                     PHAGE_Entero_phiFL4A_NC_013644: DNA helicase; HMPREF0534_0142; phage(gi281416462)     2.01e-23            [LactobacillusreuteriCF48-3A]
114041..114508                     hypothetical protein; HMPREF0534_0143                                                N/A                 [LactobacillusreuteriCF48-3A]
114656..115033                     PHAGE_Burkho_phiE125_NC_003309: putative class I holin; HMPREF0534_0144; phage(gi17975232)     5.91e-19            [LactobacillusreuteriCF48-3A]
115055..115066                     attR                                                                                 N/A                 TCCTTAAAAATT
115156..115698                     hypothetical protein; HMPREF0534_0145                                                N/A                 [LactobacillusreuteriCF48-3A]
115698..116927                     PHAGE_Strept_EJ_1_NC_005294: transferase; HMPREF0534_0146; phage(gi39653711)         9.32e-79            [LactobacillusreuteriCF48-3A]
117001..117633                     hypothetical protein; HMPREF0534_0147                                                N/A                 [LactobacillusreuteriCF48-3A]
117626..117832                     hypothetical protein; HMPREF0534_0148                                                N/A                 [LactobacillusreuteriCF48-3A]
117934..119499                     PHAGE_Gordon_Nymphadora_NC_031061: hypothetical protein; HMPREF0534_0149; phage(gi100002)     1.01e-103           [LactobacillusreuteriCF48-3A]
119527..119688                     hypothetical protein; HMPREF0534_0150                                                N/A                 [LactobacillusreuteriCF48-3A]
complement(119829..119990)         hypothetical protein; HMPREF0534_0151                                                N/A                 [LactobacillusreuteriCF48-3A]
120047..121303                     PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; HMPREF0534_0152; phage(gi46402090)     1.78e-81            [LactobacillusreuteriCF48-3A]
121300..121962                     PHAGE_Geobac_E2_NC_009552: putative Clp peptidase; HMPREF0534_0153; phage(gi148747731)     9.41e-45            [LactobacillusreuteriCF48-3A]
121983..123161                     PHAGE_Geobac_GBK2_NC_023612: minor capsid protein; HMPREF0534_0154; phage(gi589893767)     9.79e-40            [LactobacillusreuteriCF48-3A]
123174..123452                     PHAGE_Geobac_E2_NC_009552: putative DNA packaging protein; HMPREF0534_0155; phage(gi148747734)     2.34e-06            [LactobacillusreuteriCF48-3A]
123453..123833                     PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; HMPREF0534_0156; phage(gi148747735)     3.02e-10            [LactobacillusreuteriCF48-3A]
123823..124245                     PHAGE_Bacill_250_NC_029024: holin; HMPREF0534_0157; phage(gi971766651)               3.14e-33            [LactobacillusreuteriCF48-3A]
124343..124531                     hypothetical protein; HMPREF0534_0158                                                N/A                 [LactobacillusreuteriCF48-3A]
124593..126146                     PHAGE_Geobac_E2_NC_009552: putative recombinase; HMPREF0534_0159; phage(gi148747753)     4.01e-32            [LactobacillusreuteriCF48-3A]
126133..126537                     recombinase; HMPREF0534_0160                                                         N/A                 [LactobacillusreuteriCF48-3A]
126524..128110                     PHAGE_Geobac_E2_NC_009552: putative recombinase; HMPREF0534_0161; phage(gi148747753)     1.07e-25            [LactobacillusreuteriCF48-3A]
141353..141366                     attR                                                                                 N/A                 ATCACTTCCCTTAT

#### region 3 ####
842685..842697                     attL                                                                                 N/A                 CCTTTTTTGTTGC
complement(843210..843797)         PHAGE_Geobac_E2_NC_009552: putative recombinase; HMPREF0534_0899; phage(gi148747753)     2.00e-15            [LactobacillusreuteriCF48-3A]
complement(844037..844345)         hypothetical protein; HMPREF0534_0900                                                N/A                 [LactobacillusreuteriCF48-3A]
complement(844967..845437)         PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; HMPREF0534_0901; phage(gi77020163)     2.84e-13            [LactobacillusreuteriCF48-3A]
complement(845467..845787)         hypothetical protein; HMPREF0534_0902                                                N/A                 [LactobacillusreuteriCF48-3A]
complement(845801..846046)         PHAGE_Bacill_phiCM3_NC_023599: holin; HMPREF0534_0903; phage(gi589892729)            9.26e-19            [LactobacillusreuteriCF48-3A]
complement(846202..846576)         PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; HMPREF0534_0904; phage(gi148747735)     6.14e-09            [LactobacillusreuteriCF48-3A]
complement(846577..846855)         hypothetical protein; HMPREF0534_0905                                                N/A                 [LactobacillusreuteriCF48-3A]
complement(846872..847909)         PHAGE_Geobac_GBK2_NC_023612: minor capsid protein; HMPREF0534_0906; phage(gi589893767)     6.37e-44            [LactobacillusreuteriCF48-3A]
848166..848660                     redoxin family protein; HMPREF0534_0907                                              N/A                 [LactobacillusreuteriCF48-3A]
848710..849468                     PHAGE_Bacill_G_NC_023719: gp273; HMPREF0534_0908; phage(gi593777729)                 1.33e-13            [LactobacillusreuteriCF48-3A]
849572..851002                     PHAGE_Bacill_G_NC_023719: gp277; HMPREF0534_0909; phage(gi593777733)                 2.31e-121           [LactobacillusreuteriCF48-3A]
850986..851558                     PHAGE_Bacill_G_NC_023719: gp275; HMPREF0534_0910; phage(gi593777731)                 4.00e-40            [LactobacillusreuteriCF48-3A]
852365..852583                     PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; HMPREF0534_0911; phage(gi100001)     9.15e-05            [LactobacillusreuteriCF48-3A]
862794..862806                     attR                                                                                 N/A                 CCTTTTTTGTTGC

#### region 4 ####
1127352..1127729                   PHAGE_Burkho_phiE125_NC_003309: putative class I holin; HMPREF0534_1212; phage(gi17975232)     6.43e-19            [LactobacillusreuteriCF48-3A]
1127849..1128391                   hypothetical protein; HMPREF0534_1213                                                N/A                 [LactobacillusreuteriCF48-3A]
1128391..1129617                   PHAGE_Lactob_Lj771_NC_010179: putative adenine methyltransferase; HMPREF0534_1214; phage(gi163932178)     4.11e-76            [LactobacillusreuteriCF48-3A]
1129690..1130310                   hypothetical protein; HMPREF0534_1215                                                N/A                 [LactobacillusreuteriCF48-3A]
1130313..1130519                   hypothetical protein; HMPREF0534_1216                                                N/A                 [LactobacillusreuteriCF48-3A]
1130561..1132179                   PHAGE_Gordon_Nymphadora_NC_031061: hypothetical protein; HMPREF0534_1217; phage(gi100002)     1.57e-106           [LactobacillusreuteriCF48-3A]
1132298..1133473                   PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; HMPREF0534_1218; phage(gi46402090)     2.27e-86            [LactobacillusreuteriCF48-3A]
1133470..1134141                   PHAGE_Geobac_E2_NC_009552: putative Clp peptidase; HMPREF0534_1219; phage(gi148747731)     1.35e-41            [LactobacillusreuteriCF48-3A]
1134160..1135338                   PHAGE_Azospi_Cd_NC_010355: Phage major capsid protein; HMPREF0534_1220; phage(gi168495136)     3.36e-42            [LactobacillusreuteriCF48-3A]
1135355..1135633                   putative phage DNA packaging protein; HMPREF0534_1221                                N/A                 [LactobacillusreuteriCF48-3A]
1135633..1136016                   PHAGE_Clostr_phiCT19406C_NC_029006: head-tail adaptor protein; HMPREF0534_1222; phage(gi971821549)     9.94e-14            [LactobacillusreuteriCF48-3A]
1136003..1136416                   PHAGE_Bacill_Fah_NC_007814: holin; HMPREF0534_1223; phage(gi89152494)                4.21e-31            [LactobacillusreuteriCF48-3A]
1136413..1136562                   hypothetical protein; HMPREF0534_1224                                                N/A                 [LactobacillusreuteriCF48-3A]
1136584..1136703                   hypothetical protein; HMPREF0534_1225                                                N/A                 [LactobacillusreuteriCF48-3A]
1136866..1137291                   PHAGE_Strept_SMP_NC_008721: putative lysin; HMPREF0534_1226; phage(gi119953752)      3.10e-09            [LactobacillusreuteriCF48-3A]
1137558..1137791                   hypothetical protein; HMPREF0534_1227                                                N/A                 [LactobacillusreuteriCF48-3A]
1137827..1139488                   PHAGE_Bacill_Fah_NC_007814: site-specific serine recombinase; HMPREF0534_1228; phage(gi89152504)     6.02e-34            [LactobacillusreuteriCF48-3A]
1139481..1141058                   PHAGE_Lactob_phiPYB5_NC_027982: putative integrase; HMPREF0534_1229; phage(gi937456185)     8.06e-28            [LactobacillusreuteriCF48-3A]
1141228..1142079                   PHAGE_Bacill_G_NC_023719: gp245; HMPREF0534_1230; phage(gi593777701)                 3.05e-20            [LactobacillusreuteriCF48-3A]

#### region 5 ####
1138005..1138019                   attL                                                                                 N/A                 ATGATGAAGGAATCT
complement(1148978..1149946)       PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; HMPREF0534_1238; phage(gi157265299)     2.10e-14            [LactobacillusreuteriCF48-3A]
1150014..1150673                   hypothetical protein; HMPREF0534_1239                                                N/A                 [LactobacillusreuteriCF48-3A]
complement(1150670..1151200)       type I restriction modification DNA specificity domain protein; HMPREF0534_1240      N/A                 [LactobacillusreuteriCF48-3A]
complement(1151190..1152728)       PHAGE_Acinet_Bphi_B1251_NC_019541: putative restriction-modification protein; HMPREF0534_1241; phage(gi423261981)     4.69e-21            [LactobacillusreuteriCF48-3A]
complement(1152725..1152946)       PHAGE_Bacter_Lily_NC_028841: Xre-like protein; HMPREF0534_1242; phage(gi971748289)     8.31e-12            [LactobacillusreuteriCF48-3A]
complement(1152958..1155570)       helicase C-terminal domain protein; HMPREF0534_1243                                  N/A                 [LactobacillusreuteriCF48-3A]
complement(1155575..1156960)       hypothetical protein; HMPREF0534_1244                                                N/A                 [LactobacillusreuteriCF48-3A]
1157271..1157789                   sigma-70, region 4; HMPREF0534_1245                                                  N/A                 [LactobacillusreuteriCF48-3A]
1157871..1158092                   hypothetical protein; HMPREF0534_1246                                                N/A                 [LactobacillusreuteriCF48-3A]
1158085..1158411                   hypothetical protein; HMPREF0534_1247                                                N/A                 [LactobacillusreuteriCF48-3A]
1158408..1159544                   PHAGE_Crocei_P2559Y_NC_023614: hypothetical protein; HMPREF0534_1248; phage(gi589893851)     1.23e-90            [LactobacillusreuteriCF48-3A]
1159525..1160100                   PHAGE_Crocei_P2559Y_NC_023614: hypothetical protein; HMPREF0534_1249; phage(gi589893852)     6.16e-63            [LactobacillusreuteriCF48-3A]
1160156..1161502                   PHAGE_Crocei_P2559Y_NC_023614: DNA polymerase; HMPREF0534_1250; phage(gi589893853)     5.42e-142           [LactobacillusreuteriCF48-3A]
1161503..1161786                   PHAGE_Entero_phiFL4A_NC_013644: DNA polymerase; HMPREF0534_1251; phage(gi281416455)     5.85e-27            [LactobacillusreuteriCF48-3A]
1161873..1162259                   hypothetical protein; HMPREF0534_1252                                                N/A                 [LactobacillusreuteriCF48-3A]
1162280..1163228                   hypothetical protein; HMPREF0534_1253                                                N/A                 [LactobacillusreuteriCF48-3A]
1163229..1163853                   PHAGE_Lactob_A2_NC_004112: putative primase; HMPREF0534_1254; phage(gi22296557)      5.65e-30            [LactobacillusreuteriCF48-3A]
1163393..1163407                   attR                                                                                 N/A                 ATGATGAAGGAATCT
1163901..1164347                   PHAGE_Strept_P9_NC_009819: hypothetical protein; HMPREF0534_1255; phage(gi157311153)     2.63e-18            [LactobacillusreuteriCF48-3A]
1164328..1164504                   PHAGE_Lactoc_1358_NC_027120: putative helicase; HMPREF0534_1256; phage(gi824479796)     3.37e-14            [LactobacillusreuteriCF48-3A]
complement(1164505..1164681)       PHAGE_Lactoc_1358_NC_027120: putative helicase; HMPREF0534_1257; phage(gi824479796)     4.01e-14            [LactobacillusreuteriCF48-3A]
complement(1164662..1165108)       PHAGE_Bacter_APSE_2_NC_011551: hypothetical protein; HMPREF0534_1258; phage(gi212499740)     7.40e-18            [LactobacillusreuteriCF48-3A]
complement(1165156..1165780)       PHAGE_Lactob_CL2_NC_028835: DNA primase; HMPREF0534_1259; phage(gi971748054)         4.28e-29            [LactobacillusreuteriCF48-3A]
