gi|00000000|ref|ADCN00000000.1|  Bifidobacterium longum strain 12_1_47BFAA, whole genome shotgun 2401436, gc%: 60.10%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
731434..731445                     attL                                                                                 N/A                 GGGAGCCAATGA
complement(743357..746011)         PHAGE_Bacill_0305phi8_36_NC_009760: PcrA helicase; HMPREF0177_00640; phage(gi156564011)     2.33e-148           [Bifidobacteriumlongum]
746128..746709                     xanthine phosphoribosyltransferase; HMPREF0177_00641                                 N/A                 [Bifidobacteriumlongum]
746760..748124                     PHAGE_Clostr_c_st_NC_007581: putative uracil permease; HMPREF0177_00642; phage(gi80159777)     3.73e-17            [Bifidobacteriumlongum]
complement(748254..748463)         PHAGE_Lactoc_lato_NC_004746: hypothetical protein; HMPREF0177_00643; phage(gi30089869)     8.07e-09            [Bifidobacteriumlongum]
complement(748470..748730)         hypothetical protein; HMPREF0177_00644                                               N/A                 [Bifidobacteriumlongum]
748980..749311                     PROPHAGE_Escher_EDL933: partial putative transposase; HMPREF0177_00645; phage(gi15801060)     3.53e-05            [Bifidobacteriumlongum]
749312..749762                     PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0177_00646; phage(gi9635740)      1.27e-29            [Bifidobacteriumlongum]
complement(749755..750576)         PHAGE_Mycoba_Bactobuster_NC_031279: prohead core protein protease; HMPREF0177_00647; phage(gi100061)     2.39e-05            [Bifidobacteriumlongum]
750864..751802                     PHAGE_Strept_Jay2Jay_NC_029098: tapemeasure; HMPREF0177_00648; phage(gi985760269)     6.80e-31            [Bifidobacteriumlongum]
complement(751891..752292)         glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein; HMPREF0177_00649     N/A                 [Bifidobacteriumlongum]
752451..753065                     nicotinamidase; HMPREF0177_00650                                                     N/A                 [Bifidobacteriumlongum]
753317..754795                     PHAGE_Gordon_Nymphadora_NC_031061: hypothetical protein; HMPREF0177_00651; phage(gi100038)     1.59e-15            [Bifidobacteriumlongum]
763148..763159                     attR                                                                                 N/A                 GGGAGCCAATGA

#### region 2 ####
complement(1228306..1229205)       PHAGE_Entero_phi92_NC_023693: Phi92_gp066; HMPREF0177_01019; phage(gi726646999)      7.23e-125           [Bifidobacteriumlongum]
complement(1229248..1230336)       PHAGE_Sphing_PAU_NC_019521: gp186; HMPREF0177_01020; phage(gi435844689)              1.88e-11            [Bifidobacteriumlongum]
complement(1230343..1231365)       PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; HMPREF0177_01021; phage(gi100279)     7.92e-38            [Bifidobacteriumlongum]
1231784..1231942                   PHAGE_Bacter_Diva_NC_028788: transposase; HMPREF0177_01022; phage(gi971743573)       2.07e-09            [Bifidobacteriumlongum]
1231939..1232361                   PHAGE_Bacter_Diva_NC_028788: transposase-like protein; HMPREF0177_01023; phage(gi971743572)     1.34e-17            [Bifidobacteriumlongum]
1232745..1233119                   PROPHAGE_Escher_CFT073: transposase insI; HMPREF0177_01024; phage(gi26250328)        2.15e-39            [Bifidobacteriumlongum]

#### region 3 ####
2020893..2021597                   PHAGE_Clostr_phiCD211_NC_029048: Phage integrase family prophage LambdaCh01; HMPREF0177_01688; phage(gi981220898)     1.43e-23            [Bifidobacteriumlongum]
2021545..2021937                   hypothetical protein; HMPREF0177_01689                                               N/A                 [Bifidobacteriumlongum]
complement(2022142..2022735)       hypothetical protein; HMPREF0177_01690                                               N/A                 [Bifidobacteriumlongum]
complement(2022707..2022913)       collagen alpha-1(XVI) chain; HMPREF0177_01691                                        N/A                 [Bifidobacteriumlongum]
complement(2022926..2023576)       PHAGE_Leucon_phiLN12_NC_024385: hypothetical protein; HMPREF0177_01692; phage(gi658607755)     1.54e-29            [Bifidobacteriumlongum]
complement(2023641..2024480)       PHAGE_Leucon_phiLN12_NC_024385: hypothetical protein; HMPREF0177_01693; phage(gi658607755)     1.09e-25            [Bifidobacteriumlongum]
complement(2025212..2025526)       PHAGE_Pseudo_201phi2_1_NC_010821: virion structural protein; HMPREF0177_01694; phage(gi189490385)     2.55e-05            [Bifidobacteriumlongum]
complement(2025523..2025921)       hypothetical protein; HMPREF0177_01695                                               N/A                 [Bifidobacteriumlongum]
complement(2025921..2027492)       hypothetical protein; HMPREF0177_01696                                               N/A                 [Bifidobacteriumlongum]
complement(2027477..2028322)       hypothetical protein; HMPREF0177_01697                                               N/A                 [Bifidobacteriumlongum]
complement(2028309..2031035)       PHAGE_Propio_PHL060L00_NC_022338: putative tape measure protein; HMPREF0177_01698; phage(gi543171461)     1.01e-57            [Bifidobacteriumlongum]
complement(2031086..2031565)       hypothetical protein; HMPREF0177_01699                                               N/A                 [Bifidobacteriumlongum]
complement(2031986..2032606)       PHAGE_Propio_2012_15_NC_027371: hypothetical protein; HMPREF0177_01700; phage(gi849122186)     4.56e-07            [Bifidobacteriumlongum]
complement(2032650..2033048)       hypothetical protein; HMPREF0177_01701                                               N/A                 [Bifidobacteriumlongum]
complement(2033045..2033290)       hypothetical protein; HMPREF0177_01702                                               N/A                 [Bifidobacteriumlongum]
complement(2033294..2033611)       hypothetical protein; HMPREF0177_01703                                               N/A                 [Bifidobacteriumlongum]
complement(2033611..2034027)       PHAGE_Lactoc_r1t_NC_004302: hypothetical protein; HMPREF0177_01704; phage(gi23455752)     2.32e-09            [Bifidobacteriumlongum]
complement(2034040..2034336)       hypothetical protein; HMPREF0177_01705                                               N/A                 [Bifidobacteriumlongum]
complement(2034336..2035232)       PHAGE_Mycoba_Halo_NC_008202: capsid protein; HMPREF0177_01706; phage(gi109392294)     5.01e-51            [Bifidobacteriumlongum]
complement(2035264..2035794)       PHAGE_Propio_2012_15_NC_027371: capsid and scaffold protein; HMPREF0177_01707; phage(gi849122192)     5.21e-05            [Bifidobacteriumlongum]
2036006..2036354                   PROPHAGE_Escher_EDL933: partial putative transposase; HMPREF0177_01708; phage(gi15801060)     2.99e-05            [Bifidobacteriumlongum]
complement(2036355..2036721)       PROPHAGE_Escher_MG1655: IS30 transposase; HMPREF0177_01709; phage(gi16132105)        5.87e-07            [Bifidobacteriumlongum]
2036869..2037861                   PHAGE_Prochl_P_TIM68_NC_028955: putative zinc-containing alcohol dehydrogenase superfamily protein; HMPREF0177_01710; phage(gi971760362)     1.75e-10            [Bifidobacteriumlongum]

#### region 4 ####
2297829..2297840                   attL                                                                                 N/A                 CGACACGCCGAA
2302957..2303371                   PROPHAGE_Escher_MG1655: IS30 transposase; HMPREF0177_01933; phage(gi16132105)        9.80e-09            [Bifidobacteriumlongum]
2303377..2303610                   30S ribosomal protein S3; HMPREF0177_01934                                           N/A                 [Bifidobacteriumlongum]
2303743..2305158                   PHAGE_Gordon_Nyceirae_NC_031004: hypothetical protein; HMPREF0177_01935; phage(gi100046)     4.08e-33            [Bifidobacteriumlongum]
2305404..2306258                   hypothetical protein; HMPREF0177_01936                                               N/A                 [Bifidobacteriumlongum]
2306255..2306671                   PHAGE_Mycoba_Gardann_NC_031124: hypothetical protein; HMPREF0177_01937; phage(gi100067)     3.15e-14            [Bifidobacteriumlongum]
2306668..2306877                   hypothetical protein; HMPREF0177_01938                                               N/A                 [Bifidobacteriumlongum]
2306874..2307467                   hypothetical protein; HMPREF0177_01939                                               N/A                 [Bifidobacteriumlongum]
2307607..2307801                   hypothetical protein; HMPREF0177_01940                                               N/A                 [Bifidobacteriumlongum]
2307794..2308114                   hypothetical protein; HMPREF0177_01941                                               N/A                 [Bifidobacteriumlongum]
2308227..2308478                   hypothetical protein; HMPREF0177_01942                                               N/A                 [Bifidobacteriumlongum]
2308555..2308818                   tight junction protein ZO-3; HMPREF0177_01943                                        N/A                 [Bifidobacteriumlongum]
2308815..2309000                   TPR repeat-containing protein; HMPREF0177_01944                                      N/A                 [Bifidobacteriumlongum]
2309089..2309841                   hypothetical protein; HMPREF0177_01945                                               N/A                 [Bifidobacteriumlongum]
2310023..2310226                   tensin-4; HMPREF0177_01946                                                           N/A                 [Bifidobacteriumlongum]
2310223..2310576                   PHAGE_Arthro_vB_ArS_ArV2_NC_022972: HNH endonuclease; HMPREF0177_01947; phage(gi563398111)     9.15e-25            [Bifidobacteriumlongum]
2310708..2311148                   PHAGE_Mycoba_OkiRoe_NC_024366: terminase small subunit; HMPREF0177_01948; phage(gi658310899)     1.91e-08            [Bifidobacteriumlongum]
2311117..2312580                   PHAGE_Arthro_vB_ArS_ArV2_NC_022972: terminase; HMPREF0177_01949; phage(gi563398113)     1.11e-126           [Bifidobacteriumlongum]
2312577..2314079                   PHAGE_Arthro_vB_ArS_ArV2_NC_022972: portal protein; HMPREF0177_01950; phage(gi563398114)     1.08e-58            [Bifidobacteriumlongum]
2314000..2315286                   PHAGE_Mycoba_Phantastic_NC_024148: capsid maturation protease; HMPREF0177_01951; phage(gi640885278)     9.72e-11            [Bifidobacteriumlongum]
complement(2315399..2315856)       PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0177_01952; phage(gi9635740)      1.40e-29            [Bifidobacteriumlongum]
2315857..2316313                   PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0177_01953; phage(gi9635740)      1.40e-29            [Bifidobacteriumlongum]
2328391..2328402                   attR                                                                                 N/A                 CGACACGCCGAA

#### region 5 ####
2360311..2360322                   attL                                                                                 N/A                 GGAATAAAAACG
complement(2371768..2372250)       PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0177_02017; phage(gi9635740)      4.79e-26            [Bifidobacteriumlongum]
2375208..2375219                   attL                                                                                 N/A                 GCCGGCCGGCAG
2378238..2378257                   attL                                                                                 N/A                 CACACGTACAGGAAGCCCCT
complement(2378400..2378748)       integrase; HMPREF0177_02018                                                          N/A                 [Bifidobacteriumlongum]
2378975..2379622                   hypothetical protein; HMPREF0177_02019                                               N/A                 [Bifidobacteriumlongum]
2379622..2380323                   cobalt transporter; HMPREF0177_02020                                                 N/A                 [Bifidobacteriumlongum]
2380323..2380658                   cobalt/nickel transport system ATP-binding protein; HMPREF0177_02021                 N/A                 [Bifidobacteriumlongum]
complement(2380608..2381192)       PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0177_02022; phage(gi9635740)      9.23e-31            [Bifidobacteriumlongum]
complement(2381193..2381591)       PROPHAGE_Escher_EDL933: partial putative transposase; HMPREF0177_02023; phage(gi15801060)     7.44e-05            [Bifidobacteriumlongum]
2381912..2382949                   hypothetical protein; HMPREF0177_02024                                               N/A                 [Bifidobacteriumlongum]
2383058..2384164                   PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0177_02025; phage(gi9635740)      3.11e-46            [Bifidobacteriumlongum]
2384252..2384538                   PROPHAGE_Escher_EDL933: partial putative transposase; HMPREF0177_02026; phage(gi15801060)     2.19e-05            [Bifidobacteriumlongum]
2384574..2385119                   PHAGE_Bacter_Sitara_NC_028854: transposase; HMPREF0177_02027; phage(gi971749703)     3.77e-05            [Bifidobacteriumlongum]
2385116..2385973                   PHAGE_Bacter_Sitara_NC_028854: transposase-like protein; HMPREF0177_02028; phage(gi971749702)     6.41e-37            [Bifidobacteriumlongum]
complement(2386095..2387366)       PROPHAGE_Escher_MG1655: IS30 transposase; HMPREF0177_02029; phage(gi16132105)        1.04e-74            [Bifidobacteriumlongum]
complement(2387429..2388170)       PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0177_02030; phage(gi588498272)     7.23e-23            [Bifidobacteriumlongum]
complement(2388199..2388652)       PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0177_02031; phage(gi9635740)      7.06e-26            [Bifidobacteriumlongum]
2389012..2389031                   attR                                                                                 N/A                 CACACGTACAGGAAGCCCCT
complement(2389849..2390607)       PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0177_02032; phage(gi9635740)      5.18e-46            [Bifidobacteriumlongum]
2390678..2390699                   attL                                                                                 N/A                 AACACCGACTTGACGAAATACA
2391429..2391667                   integrase; HMPREF0177_02033                                                          N/A                 [Bifidobacteriumlongum]
2391747..2392166                   homogentisate 1,2-dioxygenase; HMPREF0177_02034                                      N/A                 [Bifidobacteriumlongum]
2392597..2392872                   PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0177_02035; phage(gi588498272)     3.18e-18            [Bifidobacteriumlongum]
2392956..2393436                   PROPHAGE_Escher_MG1655: IS30 transposase; HMPREF0177_02036; phage(gi16132105)        9.30e-07            [Bifidobacteriumlongum]
complement(2393703..2394173)       PHAGE_Pseudo_JBD44_NC_030929: hypothetical protein; HMPREF0177_02037; phage(gi100017)     7.35e-55            [Bifidobacteriumlongum]
2395861..2395882                   attR                                                                                 N/A                 AACACCGACTTGACGAAATACA
2397889..2397900                   attR                                                                                 N/A                 GCCGGCCGGCAG
2401059..2401070                   attR                                                                                 N/A                 GGAATAAAAACG
