gi|00000000|ref|AE015929.1|  Staphylococcus epidermidis ATCC 12228, complete genome. 2499279, gc%: 32.10%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
40416..40427                       attL                                                                                 N/A                 TATTTTTGATTA
complement(42441..44069)           PHAGE_Entero_EFC_1_NC_025453: site-specific integrase; SE_0036; phage(gi725950572)     2.42e-59            StaphylococcusepidermidisATCC12228MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKFMNRPELQRMLKDAKEGNIDCVMIYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAKYKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWNKVQIRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVARVNQENQVDCASLHHDIAYKQQQYDEVRIKLNNLIKTIEDNPDLTSVIRPSIQKYDKQLNDIMSQINQLKKQQNEDKPSYNAKKIGKILRYVFHNIEKMKKSQLKALYLAVIDRIDIRKDSNHKKQFYVTLKLDNEVIKQVFNDIPLDEVLLSTSSLFLPQPFYLTI
complement(44091..45440)           PHAGE_Anoxyb_A403_NC_048701: tail length tape-measure protein; SE_0037; phage(gi100057)     5.04e-33            StaphylococcusepidermidisATCC12228MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQVTQLIQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYHNGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSIYEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQAMQSSIA
complement(45674..47467)           PHAGE_Staphy_PT1028_NC_007045: ORF001; SE_0038; phage(gi66395165)                    1.65e-09            StaphylococcusepidermidisATCC12228MAQTNLSFNPSPRYKSKKGWYKDTPPKEKGGMPTEVEIAGPIVIENKFIDPKTNTEKLIITDEDQKEIVESSDILTTQKLPSLMKYGFSINEKYTKDLGYALQQMRNQLPISYLYEGVGILETPFGPIVSLSEIYTTKEFDNKSPSDAICDNAYDLTPKGTFDNWFNMYLKEVKGSLLLELAVVFGISALVTSFLKHKHETEFAGIIFSFTGQSSTGKSTAASLAVSVAGNPTKGNETLFRNWNATRNALEGYLSNNFGIPIVFDELSSATFRDTTGLLYSITEGQGRQRSNVHGEVKTPKNWGTSVISTSEHSIFNDSAQNDGLRVRTIEINEQFTTNATNADNIKKAVALNYGHVLPLVAKYLINREDEVIQWFYKEVDWFEAKLKDDKSNTGNRMFKRYAVITTSAKILGRVLATDIDIAKIRDYFIDYHGHTISERSLADKAIDVIIQFVAQNRGKFSDEGALKNMFENYGLISLKDDHIEVKMIANVFKQMLNNHQFQDVNNVVNALRDKGFILADRGRQTTKRSVKDNSGKKQSLVFYHLKLDVEFASILGLTKDKSLIQNWTPANDNKAAKELFKSANEGIGPSGVHEDF
complement(47467..47763)           conserved hypothetical protein; SE_0039                                              N/A                 StaphylococcusepidermidisATCC12228MYFNQSDKFEQLKKKILGISFNLPEGEEFTFHDLNSRANVQCSKAVQQNVGRWFAYFVKHAPRVPFIIIGKDTHGHLVYLKTGPNPHHNSNPSKGGDC
complement(47956..49002)           conserved hypothetical protein; SE_0040                                              N/A                 StaphylococcusepidermidisATCC12228MNKRDIYNEKFQNALVDIILNIDKINVKEVFDDSCRAVDQDNKKDTLNRSPKDFSINISDIVRYSILCMENLNSDKIEENINMIKNHSSELNDNDMFIQEKNNFTTNFNKFCNALGINIANFKSGKSYVFKPKSLFVLYDILSNNSVYLHFFKNGINDKDIDSSNRIKENLYYFINHEITDQRDYEHALTNYYLYFLVDSNIEIGIKSIIIKIFTEKGITSKDKLQILEYYLDEIDDLNTEISTKIADAHVKNSTNFLENEKVSINSNLAKYITHRDTRASAPKNMLLSLILNSDLVSPKDLEEKELKYPKKITKEHHDKLIKEINKALDYYNDNNTTPSDYFYITSD
49457..50611                       Abi-alpha protein; SE_0041                                                           N/A                 StaphylococcusepidermidisATCC12228MLKHKIINLIQEKREGSYWDFKAEYHKDKAELLHDIICLSNNLLNQEAYLILGVADNGHILGVAGDSNRKNQEELISFITGKKFAAGRHPKISLMTFEYEEKEIDVIIINPKGYVPYYLERAETDQKSKKNKTVNAGSIYTRVEDKNTPIDSTASPLDTEILWKMHFGLYPTPIKRLQNYLLTPEKWMQNSTGYFHSESPEYIVYKNEDIEEKENYFNLVSPFYAYNQINSNTLYSYYEFKYHSTVLYGCRCISLDSGIYTTPVPELGEINFNMHRDDTIYYRYFIEETMLYNIHLFMYKGDSMEEKFAMDKFLECVLVYKSDVEKELFENYILDNWDKVNQSINENNKRVFGTEHLSQLEKEDITKKVKTVKVLKDELENFRT
50641..51441                       abortive phage resistance protein; SE_0042                                           N/A                 StaphylococcusepidermidisATCC12228MKKSTLIDKFLDLLSSRSSLREIQNNFIDANIMRDSSINQKYNGQRKSLAWEYISTLNLEDEAEFSKLLNVIETYLFQWNLYIHEVDEDEEINRLIKIINVLGYEYNKDTGKITKNEREVNLSTIKSLAIKFDIEYVLKECNRIEKEALTDPEDAITSAKSMVESTLKHILDSEGEKFNNNETLRGLYKKVSNIMNLSPGGHNENTFKTILSGMINVINGLDEVRNEYGDAHGKSKKNYRPETRHAFLAINAARTITEFLLASYKK
51559..51572                       attL                                                                                 N/A                 AGTATGCAATATTA
51581..51620                       attL                                                                                 N/A                 TAAATTTTGATATATTTAAAGAAAGATTAAGTTTAGGGTG
51626..51769                       type I restriction enzyme R protein; SE_0043                                         N/A                 StaphylococcusepidermidisATCC12228MAYQSEYALENEVLQQLEELNYERVNIHNIKLEINEYLKELGVLKNE
51762..52964                       PHAGE_Lactob_BH1_NC_048737: hypothetical protein; SE_0044; phage(gi100026)           7.62e-30            StaphylococcusepidermidisATCC12228MNKQTNTPELRFPEFDEEWKKRKLGEVVNYKNGGSFESLVKNHGVYKLITLKSVNTEGKLCNSGKYIDDKCVETLCNDTLVMILSEQAPGLVGMTAIIPNNNEYVLNQRVAALVPKQFIDSQFLSKLINRNQKYFSVRSAGTKVKNISKGHVENFNFLSPNYTEQQKIGNFFSKLDRQIELEEEKLELLEQQKRGYIQKIFSQDLRFKDENGNSYPDWSIKKIEDISKVNKGFTPNTKNDKYWDELNENWLSIAGMTQKYLYKGNKGITEKGASKHVKVDKDTLIMSFKLTLGKLAIVKEPIYTNEAICHFVWKESNVNTEYMYYYLNSINISTFGAQAVKGVTLNNDAINSIIVKLPVIQEQNKIAYFFNKLDKLIEKQSSKVELLKQRKQGFLQKMFV
complement(52968..53219)           PHAGE_Staphy_Pvl108_NC_008689: putative transposase; SE_0045; phage(gi119443708)     1.04e-10            StaphylococcusepidermidisATCC12228MGFTRMSVRGINKAKRELGFVLIALIIRKVTAQSAKNNQKIYKKDNFYINLIEIIFFIYSKTLCLGLAFIMLSLFNILHNRTL
complement(53287..53784)           PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; SE_0046; phage(gi9630137)       2.25e-09            StaphylococcusepidermidisATCC12228MKLRALEYSDLLFVHELNNEYSIMSYWFEEPYESLTELQYLFDKHLLDESERRFIVEDENQVVGIVELVEINYIHRNCEIQIIIKPEFSGKGYAKFAFEKAINYAFDILNMHKIYLYVDTDNKKAVHIYESQGFKTEGLLKEQFYTKGKYKDAYFMSLLKSEYIL
53828..53839                       attL                                                                                 N/A                 TAAATAACGAAT
complement(54063..54191)           hypothetical protein; SE_0047                                                        N/A                 StaphylococcusepidermidisATCC12228MIVKIDWYITSQQLKAKKYLIKSMKISRNNDFQNIINNYLTK
complement(54456..54866)           conserved hypothetical protein; SE_0048                                              N/A                 StaphylococcusepidermidisATCC12228MKRLMYSSALYTLLGLLSGLFYREMTKAEDFSGFSQLNVTHTHLLVLGTIMFLIFMIIEGQFKLTTHTKLFNSFFYIYHLGVLVTVAMQFVNGISTIKDLSVSPAIAGIAGLGHIFLTIAFILFFILLGKRINKNK
complement(55172..55279)           hypothetical protein; SE_0049                                                        N/A                 StaphylococcusepidermidisATCC12228MDIKIKGGLSMNHDTTQSDWRTVASCLDSQITLKL
complement(55264..55467)           conserved hypothetical protein; SE_0050                                              N/A                 StaphylococcusepidermidisATCC12228MKAISESDTVILAYGAYAKRPVVVERVEQVMEMLKPHKKKVKKLINPVTNEVMHPLNPKARQKWTLK
complement(55611..56624)           PHAGE_Bacill_vB_BceS_MY192_NC_048633: minor tail protein; SE_0051; phage(gi100055)     4.51e-27            StaphylococcusepidermidisATCC12228MERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTDSLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPGLERLFSSRYSIIALNIAEIFTHPDMVLDIDKDVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
complement(56998..57327)           PHAGE_Caulob_rogue_NC_019408: DUF1643 protein; SE_0052; phage(gi414089014)           2.55e-06            StaphylococcusepidermidisATCC12228MNTIKSTIHTEAIFSDDEQHRYLLKKIWDEKKPSCTVITMYPHLDGVLSLDLTTVLILNQLANSEQYGAVYLVNLFSNIKTPENLKHIKHTKISYEEIYDDRFFHSYFL
complement(57343..57654)           conserved hypothetical protein; SE_0053                                              N/A                 StaphylococcusepidermidisATCC12228MNINRYITRGISEHLSLDLQILLWNMVKERDNQPHTDYLHIFKLQEDENILSITHEQEQPAYKLEYHYTNYVKNQNALPKKVYVIREDGVDAFYYVMLLPEEY
complement(57656..57748)           conserved hypothetical protein; SE_0054                                              N/A                 StaphylococcusepidermidisATCC12228MNNWIKVAQISVTVINEVIDIMKEKQNGGK
complement(57741..58091)           conserved hypothetical protein; SE_0055                                              N/A                 StaphylococcusepidermidisATCC12228MKTTTQELKQYITRLFQLSNNETWECEALEEAAENILPERFINNSLLAHLTLNTYTYYNDELHELSIYPFLMYANDQLISIGYLDHFDMDFLYLTDTKNTLIDERHLLKQGGNHHE
complement(58592..60220)           PHAGE_Entero_EFC_1_NC_025453: site-specific integrase; SE_0056; phage(gi725950572)     1.83e-61            StaphylococcusepidermidisATCC12228MKQLKKKRIGLYARVSTEMQTDGYSIQGQLNQLTEYCQFQGYEVVNEYTDRGISGKTMQRPELQRMLKDANEGKLDCIMVYKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFAEFERNTIVENVYNGQRQRAIEGYYQGNLPLGYDKVPDSKKELMINQHEANIVKYIFDSYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAKYRHWSDKRRKGLNEEPIIADGKHAPIIDRNLWDKVQFKRQESRKKPQVHGKGTNLLTGIVKCPKCGAAMEASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNEKSQIDVSSLNHDIAYKQSQCEEIKAKMHTLTKTIEDSPDLDSVLKPTILSYQDELNQINNQIYQLEQDKQAEAPHYDADMIANVLQAIFKDIDKLEKSQLKSLYLTIIDRIDIRKDEHHKKQFYVTLKLNNDIIKQLFNNHPLDEVLPSTSSLFLPQTLYITIE
complement(60217..61578)           PHAGE_Anoxyb_A403_NC_048701: tail length tape-measure protein; SE_0057; phage(gi100057)     2.66e-29            StaphylococcusepidermidisATCC12228MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEIITSGKCKVLCCYRLNRLHRNLKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNILMSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYRKGCFVVQEEEAYTVKSVYRWYLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDTFEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAYRTCPFKSINAPELESEVLDTCKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLIEKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKYVIKNKITLQDIAPFIDCIKITQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI
complement(61765..62346)           conserved hypothetical protein; SE_0058                                              N/A                 StaphylococcusepidermidisATCC12228MFKRYAAITTSAKILSHVLSTDIDIAKIRDYFIDYHAHTVSERSLADKAIEVITQFVAQNRGKFSDDTALKNMIENYGLIALKDDYIEVKIIASVFKNMLIEHHFQDVNNVVNALRDKGFIESDRDRITTKRAVKDDYGKKQSLVFYHLKLDSKYASIFGLTKDAEPIKAEINLDNKKILESWKKQNDDLIDF
62622..62741                       cassette chromosome recombinase A; SE_0059                                           N/A                 StaphylococcusepidermidisATCC12228MLYRYIDEIHISKNKSLVGIYFKNEPLNIVNQATQSSIA
complement(62853..63212)           hypothetical protein; SE_0060                                                        N/A                 StaphylococcusepidermidisATCC12228MDDRALASALGIGVGGGLAWIMEGFQSGHGFIYSLCAGLIIGLLFFEMIPESIELGGWVILLGGIAIGLVLFQSIHLLMDKITIITNSHQKDIFVRSGVLLIISIAIHNFPVGNIPLFV
63795..63807                       attL                                                                                 N/A                 TTGTTATATGATC
63848..63946                       hypothetical protein; SE_0061                                                        N/A                 StaphylococcusepidermidisATCC12228MDMENKKTEWKALYDISKESEMGVAERVSEYG
64066..66000                       copper-transporting ATPase copA; SE_0062                                             N/A                 StaphylococcusepidermidisATCC12228MIEMKNIQEQQAHESHSHDHSHDHDHGKMPIISYFIGLVLAIIGLFLSDANLLIQNILFSIATITAGYHVIILEGIGETVENTKLKGKFTPNSHILMGLAAIGASLIGSFWEGTLLILIFSGAHFLEDYAEGKSKREITKLLEMNPTTAKLILPDGNTKIVDVSELKVGDQLQVLNGDQVPIDGIILSGTTSIDESSINGESIPKEKSKGDEVFGSTINGTGTFTMEVTKENKDTVFSKILQLVSQNQDNQTKAASIIQKFEPKYVNIVLIAIPLVMLLAPFLFDWTWSQSVYRGLVLLVAASPCALAAATVSVTLSTTSNLAKKGVLSKGSTYLSQLADIDAIAFDKTGTLTNGEPKVTNYYFTHSVNEENIIDIIVALEKESNHPLANAILEKFEVKNKIDIEVTNQIGKGLTGDYNGKNYRIGKPTSFESASEEYTQFNHDWASEGKTVVYVAENEEVIGIIALMDIPNEHAKETINYFKKLGIHTTLITGDSEMTGKAVGEQLGIDEVIANVMPEDKSRIIEEQKEKFGVTAMVGDGVNDAPALVNADVGIAMGGGTDVAVEVSDLVLMQNNLSKLVQSHKISSNMGRVIRQNIIFSMAVVAFLVVVSLLGLTDITISVIVHEGSTLVVILNGLRLLRSK
66149..66160                       attL                                                                                 N/A                 AATAAGCAATTA
complement(67123..67245)           truncated transposase; SE_0063                                                       N/A                 StaphylococcusepidermidisATCC12228MLMALNIRNVTAQRSENNQKNYKKDNFYITSIEIVFFHLS
complement(67312..67488)           PHAGE_Staphy_phiPV83_NC_002486: transposase; SE_0064; phage(gi9635722)               2.56e-08            StaphylococcusepidermidisATCC12228MPIVMINIVFKRDFKLYECDDCSECPLKHQCIKYKLQIKNKNHLQSKKVDVEPVFWIY
complement(67457..67579)           PHAGE_Staphy_Pvl108_NC_008689: putative transposase; SE_0065; phage(gi119443708)     5.23e-13            StaphylococcusepidermidisATCC12228MTFLNTQNGDYDEINDEFTCPNNKRLGFKRYAYSHDKYSF
complement(67566..67673)           PHAGE_Staphy_phiPV83_NC_002486: transposase; SE_0066; phage(gi9635722)               1.30e-05            StaphylococcusepidermidisATCC12228MNKDSKAFYHFNRMPLITYEMFIKDKTKKYKSDIS
complement(67822..67992)           PHAGE_Staphy_Pvl108_NC_008689: putative transposase; SE_0067; phage(gi119443708)     3.32e-21            StaphylococcusepidermidisATCC12228MMLKVVLYTYTQSVFSGRKIEKLLNDRIRMVWLSQNLKHSYKTINRFRVNPKVMLY
68194..68763                       hypothetical protein; SE_0068                                                        N/A                 StaphylococcusepidermidisATCC12228MVNDDFTNELYQLIVPMDDKIKENIDEVLSFYNINFKKYLFSISSLVTFEKCNKLRGRIAKYPIFTILYEKVEYDEKGIKIIINSKILNDIQTHVSHIPNTTEIYLVNFNNLNISEKTKKELVKELNKMFNDQKKRKLAHQVVNIIEIIKLDSHGKSLIDIGYFYLGAKNSALKFQKIHIQEKMDYRGK
68808..69965                       hypothetical protein; SE_0069                                                        N/A                 StaphylococcusepidermidisATCC12228MNQFQPYFDKKDSKTKRSNYEFDMEQFESISTLVDLLENYPLPKSENNIKHLESIKKNIFSDNADEYEKYFNEGIDKLKEGAFELQKQLYNQYPFQLLMRFQYELTELIKHISMYFKQVNQSNIYEATTLYEKLNNFILRSLLENNSEKVNFKNFLNGVKFEESTINADEEIIVKKYNDFVDNIEFNKDDFDKLYDQYEVFNSITKLVTLNEDEIKWDHIFVYKYKLKTPFIDKIIIDNLKNIKSQYIDSKTMLEREYNKNGNFIFDFLNLAKCKDENELDEEIDELLFNLDNIGNRLLKKVVLGHSKNIKYSNALLKEIRRMIKVLNLYSSQKNQSNMVVTYHQLQKSDNEFDNRINLLTKELVYLRVKKELFNNSKYTHNDDR
70136..70372                       hypothetical protein; SE_0070                                                        N/A                 StaphylococcusepidermidisATCC12228MSLKMESKVVVKVEHDNDKLRVELNVSKRDDFNYQMHFAISERAYALLTVMIGRALMLPRGTVFSCYERFCCKVEFIV
70397..71071                       PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; SE_0071; phage(gi985761246)     5.71e-163           StaphylococcusepidermidisATCC12228MNYFRYKQFNKDVITVAVGYYLRYALSYHDISEILRERGVNVHHSTVYRWVQEYAPILYRIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
complement(71099..71476)           lipoprotein signal peptidase; SE_0072                                                N/A                 StaphylococcusepidermidisATCC12228MEIGQTIPLWEGVFHITSLRNKGAAFGILQGQRWFFIIVTLIVVLGIIYYLQTEGRNNRRISFALSLLLGGALGNFFDRLIRGEVIDSLDFRLIDYPIFNLADVFIVSGVALMILEVLLQSKKYS
71924..72112                       cadmium efflux system accesory protein; SE_0073                                      N/A                 StaphylococcusepidermidisATCC12228MCVCDVATIIGSTNATASHHLRMLRNMGFAEYHKKGKIVFYRLVSNHVHHLMQEALQLKEKK
72366..73133                       putative divalent heavy-metal cations transporter; SE_0074                           N/A                 StaphylococcusepidermidisATCC12228MFSWTVVSLVLLTSIANLVGGFIVVRKEWSPKALTYLMAFSAGFLLSIGILDLMPEGLENSPENGIYILIGFLVLFSFQRILTTHFHFGYETHEDKLSKKTGGLGAFIGMTIHSFFDGVSIVAGFEVSSELGFLVFVAVLLHKIPDGLTISSIVLVVFNDRKKAFIASAVLALATIFGGALVWLLSDTEFAAEVLGDSFARIALSFSAGVFLYVAATDLLPVVNQSENRKTGLYVLLGVAVFYIASWIIGVVGLE
73390..75798                       cadmium resistance protein B; SE_0075                                                N/A                 StaphylococcusepidermidisATCC12228MSEATKPLEEKYVYRVDGFSCANCAGKFERNVKKIPGVEDAKVNFGASKISVYGEATVEELEKAGAFENLKVAPEKPRRQAPQEVKKDKNIYRVEGFSCANCAGKFERNVKKIPGVEDAKVNFGASKISVYGEATIEELEKAGAFENLKVASEKPVRQATQEINQEKEDEKEEKVPFYKKHSTLLYSTLLIVFGYLSVFVNGDENIVTTLLFVASMLIGGLSLFKVGFQNLLRFEFDMKTLMTVAVIGGAIIGEWAEVSVVVILFAISEALERFSMDKARQSIRSLMDIAPKEALVRRKGQEMMVHVDDIAVGDIMIVKPGQKIAMDGMVVSGYSAVNQAAITGESVPVEKAVDDEVFAGTLNEEGLLEVEITKLVEDTTISKIIHLVEEAQGERAPSQAFVEKFAKYYTPIIMIIAALVAVVPPLFFGASWETWVYQGLAVLVVGCPCALVISTPISIVSAIGNAAKKGVLIKGGVYLEEMGALKAIAFDKTGTLTKGVPVVTDFNVLNKQVDENEMLSIITALEYRSQHPLASAIMKRAEEANISYSDVVIDDFSSITGKGIKGTVDGTTYYIGSPKLFKELSNSSFDKNLEKKVATLQNQGKTAMVVGTDKEILAIIAVADEVRESSKEVIQKLHQLGIKNTIMLTGDNKGTANAIGSHVGVKEVQAELMPQDKLDYIKQLKSEYNNVAMIGDGVNDAPALAASTVGIAMGGAGTDTALETADVALMGDDLRKLPFTVKLSRKALNIIKANITFAIAIKFIALLLVIPGWLTLWIAILSDMGATLLVALNSLRLMRVKD
complement(75779..77440)           PHAGE_Staphy_Pvl108_NC_008689: putative transposase; SE_0076; phage(gi119443708)     0.0                 StaphylococcusepidermidisATCC12228MYKDYNMTQLTLPMETSVLIPTNDISRHVNDIVETIPETEFDEFRHHRGATSYHPKMMLKVVLYAYTQSVFSGRKIEKLLNDSIRMMWLSQNQKPSYKTINRFRVNPKVDALLESLFIQFHSQCLKQNLIDDQAIFIDGTKVEANANRYTFVWKKSIQNHESRMNENSKALYHELVINKIIPEIKKDHDNDLTKEEIDLIGSHLDKEIEDLNQHIDNEKCTKIRKQIRLKRTKIKKYKKQINDYSQRKHKYEVQKSILKDRNSYSKTDHMKNGQLKPGYNLQIATNSQFVLFYDVYQNPTDTRTMIPFLNTIQETYGHLPEYIVADAGYGSEANYMAIIDNFNRTPLITYGMFIKDKTKKYKSDIFNTQNWDYDEINDEFICPNNKRLGFKRYAYRHDKYGFKRDFKLYECDDCSECPLKQQCMNFNSKTNKKIMKNYNWEYFKAQINKKLSEPKTKTIYSQRKIDVEPVFGFMKAILGFTRMSVRGIDKAKRELGFVLMALNIRKVTAQRAENNQKNNKKDNFYIISIEIVFFYLSWDFMSHTLFTLNLSLA
77768..79282                       dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3; SE_0077       N/A                 StaphylococcusepidermidisATCC12228MKIRKRLDTYYTTIFLSTNSNYSYLSKEESRMTGEVKKYVDLLVIGAGSGGYVAAIRAAQLGKKVVLVDKAELGGVCLNRGCIPSKALISASERVKHIKHANTMGLKVSGEVQVDMPEVVKWKDGIVNKLTDGIRTLLKGNGVEVISGEAYLTEAHIAKIKIEDEEQIFSYKDLILAIGSLPVELKSMPFDQKRIISSTEALQLQEVPNHLVVVGGGYIGLELGTAYAKFGAKVTILEGSDTILSGTDPILTKTVKRHLKEIGITVITDALVQGGENTGDEVNVHVQVDGKEEIIQCDYCLVSIGRKPNTGKIGLENIGVVLDDQGFIKINNKCQTNIEHVYAIGDCAGGDLLAHKASYEAKIAAEVISGQNSVIDFQAMPFVIFSDPEVAYTGLTEKEAKEKGYETVSSRFPFQANARALSVSDADGFVQVVAEKNTKRVLGVQMVGPEVSSLIAEAVFAIEAGANAEDLSLTIHAHPTLPEPLMEAAEGVMGHATHMLNKKQ
79510..80172                       cadmium resistance transporter, putative; SE_0078                                    N/A                 StaphylococcusepidermidisATCC12228MNLILTILSALGSFIVTNVDDIFVLMLLFSQARSQAKTGNSGIVSMESKGNRIYPRDIVIGQYLGFALLVLISLLATFGVTLIPDQWVGLLGLIPIYLGVKLFIKGEDEDEGNILSNLNKFNKFYLSVAFITFANGGDNIGIYVPFFSTLNNNQLIITVVTFFIMVAVWCLIGYRLARFRYVSETLEKYGRWIIPIVFIGLGIYIMVENETFRAILSLVN
80314..80325                       attR                                                                                 N/A                 AATAAGCAATTA
complement(80680..81354)           PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; SE_0079; phage(gi985761246)     7.30e-164           StaphylococcusepidermidisATCC12228MNYFRYKQFNKDVITVAVGYYLRYALSYHDISEILRERGVNVHHSTVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
81622..82983                       regulatory protein; SE_0080                                                          N/A                 StaphylococcusepidermidisATCC12228MRRIMMTKKYDLIVIGTGSAGSITAAKCNKAGWNVAMVDDRPFGGTCALRGCDPKKVLHGAAELIDWNKRMVKNGVPSEVSINWKDLMNFKRTFTDDVPEKKEEALNKQGIDTYHGNASFVSEDKLEVNKEVLEGSHFLIASGAKPTPLPIKGEEHLTYSDEFLELDELPQRIVFVGGGYISFEFAHIAARAGSEVHIIHRGQRPLENFDIDLVDILLEKSKEIGIQVHLQHSVESIEKEQGKFHVYARKKEDITRFEADIVIHGAGRVPALDMNLEKGNIERKKHGVHVNEYLQSVSNPNVYAAGDAAATDGLPLTPVASADSHVVASNLLKGNSKKIEYPVIPSAVFTVPKMASVGMSEEEAKNSGRNIKVKQKNISDWFTYKRTNEDFAAFKVLIDEDSDQVVGAHLISNEADELINHFATAIRFGISTKELKQMIFAYPTAASDIAHML
83029..83041                       attR                                                                                 N/A                 TTGTTATATGATC
83283..83690                       conserved hypothetical protein; SE_0081                                              N/A                 StaphylococcusepidermidisATCC12228MEMKISELAKACDVNKETVRYYERKGLIAGPPRNESGYRIYSEETADRVRFIKRMKELDFSLKEIHLLFGVVDQDGERCKDMYAFTVQKTKEIERKVQDLLRIQRLLEELKEKCPDEKAIYTCPIIETLMGGPDK
83707..84060                       conserved hypothetical protein; SE_0082                                              N/A                 StaphylococcusepidermidisATCC12228MKKRISFTAIMTVLLIGLTACGAESDTANESKVQDIQGNPVSLPNEKPTLIYFMATWCPSCIYNEEIFKEIHQLNPNDVQLITVSLDPNTDTKESFAKFKQDYGGDWPHVLKIGVEL
84057..84737                       conserved hypothetical protein; SE_0083                                              N/A                 StaphylococcusepidermidisATCC12228MSFSFLFILTAGMVAAFNPCGIALLPSYISYLIGGETKDHSFRYAIFKGLGLGGAMTTGFLTIFVLAGLLIGGLGSALTGIFPILSLVMGILIALLGLGMLFGKHLPIKIGSFQVKPGKWSIYFYGIAYAVTSLGCTLPAFMLVVSASLNDNSVTAVIIKFIIYSLGMGIVVTAITMVSLISRQLVQKFLHNYMGSIQKIAAVVIFLSGLYMAYYWYFGSGGICTF
84863..85210                       mercuric transport protein; SE_0084                                                  N/A                 StaphylococcusepidermidisATCC12228MVRMMDENRSKGNRWGVWAFFGILLVPLLVPLLCCAGPILLVALGSTGIGALFAGATGNWWLTGIFAALAIVMIALILSKLLKNKYNSPEGNGKTKNKTDCCTPPESVDRKHETR
85268..86911                       dihydrolipoamide dehydrogenase; SE_0085                                              N/A                 StaphylococcusepidermidisATCC12228MTQNSYKIPIQGMTCTGCEEHVTEALEQAGAKDVSADFRRGEAIFELSDDQIEKAKQNISAAGYQPGEEESQPSENSVDFNRDGDYDLLIIGSGGAAFSAAIKANENGAKVAMVERGTVGGTCVNIGCVPSKTMLRAGEINGLAQNNPFTGLQTSTGAADLAQLTEQKDGLVSQMRQEKYIDLIEEYGFDLIRGEASFIDDKTIQVNGQNITSKSFLIATGASPAVPEIPGMNEVDYLTSTSALELKEVPQRLAVIGSGYIAAELGQMFHNLGTEVTLMQRSERLFKTYDPEISEAIDESLTEQGLNLITGVTYQKVEQNGKSTSIYIEVNGQEQVIEADQVLVATGRKPNTETLNLESAGVKTGKKGEVLTNEYLQTSNNRIYAAGDVTLGPQFVYVAAYEGGIVANNALGLAKRKIDLRFVPGVTFTNPSIATVGLTEQQAKEKGYDVKTSVLPLDAVPRALVNHETTGVYKLVVNAQTQKLIGAHIVSENAGDVIYAATLAVQFGLTIEDLTDSFAPYLTMAEGLKLAALTFDKDVSKLSCCAG
86993..87643                       organomercurial lyase; SE_0086                                                       N/A                 StaphylococcusepidermidisATCC12228MKNISEFSAQLNQTFDQGEAVSMEWLFRPLLKMLAEGDPVPVEDIAAETGKPVEEVKQVLQTLPSVELDEQGRVVGYGLTLVPTPHRFEVDGKQLYAWCALDTLMFPALIGRTVHIASPCHGTGKSVRLTVEPDRVVSVEPSTAVVSIVTPDEMASVRSAFCNNVHFFSSPSAAQDWLNQHPESSVLPVEDAFELGRHLGARYEESGPTNGSCCNI
complement(87838..88386)           conserved hypothetical protein; SE_0087                                              N/A                 StaphylococcusepidermidisATCC12228MLLGKCLGGMAMDSHLNHILSYWQGPPLEGAKTIISKYGYPQEATMRRLIWYNSGPWKRTIVYKDPVPHNFPTPHLDFLKQTIDYKVPVHLYDAIAAFDGSVYLDRTTGEASAKCHEEAMNFLSLNLLNDIVTGKRDVQGAKAFYAQTAEQFTKYHITSPYTEGFLFPMQYNTADLGVTYFK
88445..88456                       attR                                                                                 N/A                 TAAATAACGAAT
88583..88798                       hypothetical protein; SE_0088                                                        N/A                 StaphylococcusepidermidisATCC12228MVFMVSCCSIDPYTEFEVIIIGAGVPEVSLAFHLTSYGIRTALADEQNVDNRLKDFLRTFQELIERDSGMP
88823..89104                       hypothetical protein; SE_0089                                                        N/A                 StaphylococcusepidermidisATCC12228MHLILFDGTITLEGEHAVRIDEHKIRGDRMVVPFDTFKQIGKPRNQNDIHFKNDPFQRVTNDLWITNPSLSEVDQEQIWQTGDYFSKHLQNIE
complement(89170..89844)           PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; SE_0090; phage(gi985761246)     7.07e-164           StaphylococcusepidermidisATCC12228MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYRIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
90012..90051                       attR                                                                                 N/A                 TAAATTTTGATATATTTAAAGAAAGATTAAGTTTAGGGTG
90096..90206                       type I restriction enzyme R protein; SE_0091                                         N/A                 StaphylococcusepidermidisATCC12228MLQQLESLGYERVNIHNVEQLHDNFRTIINERHKYK
90561..91256                       hypothetical protein; SE_0092                                                        N/A                 StaphylococcusepidermidisATCC12228MSTIFDTHWPWMGIGIACVLIILLFFTNTLRSDLRVNRWYDPFWLAWFSSTAYFIHNFEEYGIDLFGRHFEFPHLMTQTMHITPEISFFTMINIPLIWIAGPILAMMSKHRPVISLIMTGLMFTNALSHIVPLISSGMYTSGLFTSIVIFIPGSLWIYYIRFIKGNLRWSILIVSLIPPIITQGLLMLSILMYRNDFLNDTTVTVFELLNGCLFIIIAFIMEKSFKRKYKN
complement(91329..91874)           transcriptional regulator tetR-family; SE_0093                                       N/A                 StaphylococcusepidermidisATCC12228MRIIKTKRSIHNALKRLLKEKKFDEISVKDICKEGDLSRGTFYLHYKDKYDLAYKYQIEIMKKVQTIIEKVNTLKMDDFFYKVIQFWNIEAELLMLLISDNGSSEIQSQVKRLIQYNAKRNVLPVIKTNYLTENEQHYLTVFLSNVIFGIIQEWVNNGQKESPEELSRILSKIVPKSLFID
92040..92768                       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; SE_0094; phage(gi371496158)          5.92e-23            StaphylococcusepidermidisATCC12228MSDKILELKNATKYYGDKKVLNDINIELSSGKILGLIGPSGSGKTTTIKCLMGMESLNEGYAKIFDTNMPNRKLLNDIGYMGQSDALYESLSARENLVFFGNLMGLKGKELKQAITDNMKLVNLENELDKTVSNFSGGMKRRLSLAITLLSNPNLIILDEPTVGIDPSLRKEIWKQLRELTNKDKSVIVTTHVMDEAERCDYVGLIVNGKLFTIGTPQELKEKFKVDSIEEVFIKAELEVKS
92765..93859                       conserved hypothetical protein; SE_0095                                              N/A                 StaphylococcusepidermidisATCC12228MRFKAIFVRVTKELLRDKRTLALMLVAPVLVLTLMYFIFDTNNDVNLEVGVDESVPNKIVNALPSDKVKIKEYDSPSSIKKTIVNSDLDAYIEKKGDKLDVTYKNENPSNTGTTKQLLGSAIQKNKLQDMAKVINKIPSNIKQGNSAQGEQITLDNHYLYGNSDSTFFDKMFPILIGFFVFFFVFLISGIALLRERTKGTLERLLATSVKRSEIVFGYLAGYGMFAVLQTLIIVFYAIYLLKIDVAGSIWWVLLINILIALSALAMGIFVSTFANSEFQMVQFIPLVVIPQVFFSGIIPLDNVADWVSSIGYIFPLRYAGDALTNIMIKGEGFNNIWFDLSILLVFIIGFTVLNIIGLKRYRKV
93874..94821                       alginate lyase; SE_0096                                                              N/A                 StaphylococcusepidermidisATCC12228MRKVSYNEHGGPKVLEYSDNNEVPSIESNEILVKVISTSFNPADAMIREGMLKDVLPIAFPFTPNVDVAGKIEKVGPDVKNFNVGDNIIGFLNMHENGAAADYVVTHPENLVLAPSNISIEDSGVIPSVSLTAWQALFDHYHLQSNDRILITGAAGGVGTFAVQLAKDRGAYVIGTASERSYELLQDINIDEIINYKTEEVTKDRTGKLDYILNLAPISSEGLEQLLPLLKKGGTLVSTLNTVTDQALDKYDVNVVRMAVTMNQEELDQIVNKIDNGNIKPIITKRDTLENLQMIHENRNDYNGKVLITVNEKND
94836..95441                       hypothetical protein; SE_0097                                                        N/A                 StaphylococcusepidermidisATCC12228MNWIMKNSLYLVTLLNIFILIYMIIFWDNMSIAQRYIGIFNIGLVIHLWEEGKFPGGFTKMITEKLNFTQSNPNFGSFITVLLVILVSFVPFFLSNISFLVFACITLGYIEAIAHIIAIKMFDKKVPYTPGMISAVFILLPISIITTYHLISTDSMYPMAWAFSIIYLIVCVALAQRIVIQSSGMKYSEFLSNVKQTLLKR
95718..96347                       conserved hypothetical protein; SE_0098                                              N/A                 StaphylococcusepidermidisATCC12228MNLRGHENRLKFLAKYDVTPISHLKLLEGQKKDGEGGILTDSYYCFSYSLKGNSKKVLGTFNCGYHIAEDLLKLSNQDKLPLFNPFKVINEGNQLQGVTNKGNLNINRQRKQYNEVALQLSNAINLIIICYEGNIKEPLSTIKYETDKYYYSEPYDSKIKVVNTIIGNLFDKKLVEKISEINVNQKIRKFDFSLLTNKIKKYKIQNNFE
96362..96604                       hypothetical protein; SE_0099                                                        N/A                 StaphylococcusepidermidisATCC12228MLNIEVSIKDTQDIINYFIECDVNDNYYESEQRSSLGKLALELDKVSNQLNNENIEDMKKIIEKVAEANRVIAKSSLRKN
97062..97193                       PHAGE_Staphy_SPbeta_like_NC_029119: hypothetical protein; SE_0100; phage(gi985761153)     2.72e-21            StaphylococcusepidermidisATCC12228MKRVSYSVETKYKAVEMKAAGFSTKEIMKELNIRNRTQVKTWW
97329..97913                       PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; SE_0101; phage(gi985761151)     2.74e-93            StaphylococcusepidermidisATCC12228MQKHHLNCRVRPKKTTRIGKPYYKTDNLLQRQFKASCPMEVLTTDITYLPFGHSMLYLSSIMDIYNGEIVAYKIDDKQDQSLVNDTLNQIDIPESCILHSDQGSVYTSYAYYQLCEEKGIIRSMSRKGTPADNAPIESFHSSLKSETFYINNELNRSNHIVIDIVEKYIKNYNNNRIQQKLGYLSPVKYRELIA
106432..106445                     attR                                                                                 N/A                 AGTATGCAATATTA
107406..107417                     attR                                                                                 N/A                 TATTTTTGATTA

#### region 2 ####
998407..998419                     attL                                                                                 N/A                 AAATTTTCTTTAG
complement(998429..998674)         PHAGE_Bacill_PfEFR_5_NC_031055: hypothetical protein; SE_0988; phage(gi100031)       7.93e-15            StaphylococcusepidermidisATCC12228MITYFAMNLVSRFPRSTTHNTMMYVTKKLLGKGNELSIHKLKHTHATLLLESNVPMKVIQERLGHKSEAITSDVYSHVTKK
998816..999055                     PHAGE_Staphy_StB27_NC_019914: portal protein; SE_0989; phage(gi431809707)            4.39e-25            StaphylococcusepidermidisATCC12228MKRYKLLLNNINLTGVYSHDYSKIDITFTPNLPKSLLESIEAFNALNGGVSEQTRLKILPIIDNPNEEIKKMEDEQRKT
999120..1000466                    PHAGE_Staphy_StB27_NC_019914: minor head protein; SE_0990; phage(gi431809708)        3.31e-125           StaphylococcusepidermidisATCC12228MPDSLEYWLERAQNVIKVESLADAQAIVEVERIILQMYAEIAKELLAFYAKYATDTGLTIQEVMKKADEFDVYAFRNKAKKYVKRKDFSDEANNALKLYNLSMKVSREKLLKQQLDLIVKDSTLDIQDEIENKLVDAVDREVERQVHILGENVKIDDTEVKAVVNSNFKGVNWSTRLWQDMAVVQKEVERTTSNVLLRGRHPNEYIKDFKKQTNTTTYNTSRLLVTESARVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNSKVFKVKDMIFGVNAPPMHPWCRSTTVPHVGNWRDRFFTERKGKYRVEDKELVKEKLQEKAKKEMLEMIDDGKIKIELNNEKQERHILNTKAYYNKKYNSSILPSYITLDTKEIEKITKKEFINFPVLFDDEGKFRNKQIINYNKIIGKSYVNDEYIETKLGKVHYSKTGFHVVPYIKKE
1000472..1000663                   conserved hypothetical protein; SE_0991                                              N/A                 StaphylococcusepidermidisATCC12228MNLQYYLGKIVKLTLTNNKVLVGKVTGFDDKYDNFDGFNSIEIDTGSILYDITENKIKSIVLN
1000840..1001217                   PHAGE_Staphy_phiNM_NC_008583: hypothetical protein; SE_0992; phage(gi118430766)      1.53e-24            StaphylococcusepidermidisATCC12228MQTKKTNMLKLKLQFFAEEPGDNAQTSEGQEKQDTPEKVYSEEEFNQRLNSELQRRLKQKEDEKAEAVKEAQKLAKMNKDQQLQYENEKLTKQLEEYKVRDAKSQMKAEARLMLNKEGIDVTEEP
1001224..1001412                   PHAGE_Staphy_StB27_NC_019914: scaffold protein; SE_0993; phage(gi431809709)          5.58e-05            StaphylococcusepidermidisATCC12228MLVTSNAEDTKKNVETFSNLLNKIVQSNVERALRQDSPVSTQSNKMTKDEESDYLVSGRKCL
complement(1001663..1002346)       PHAGE_Lactob_Lj965_NC_005355: putative superinfection immunity protein; SE_0994; phage(gi41179219)     4.85e-26            StaphylococcusepidermidisATCC12228MQQERQSWYQKSWFIILTLLFIFPLGLFLMWRYAHWKNWLKLTVSSVYIISLVLTLLFQVSLLNENKTNQIEHASTMKEKSNINNVKTTKNKNMEKSTQTDKQNSVNLKQNTKDQNNNANDEAASPTSEQNAAIAQAKSYANTLPISKKSLYKQLTSEYGEKYPADVAQYAVDHISVDYKMNALRLAKSYVKNINISNQASYDQLVSENGEGFTPEEAQYAINHLDR
1009443..1009455                   attR                                                                                 N/A                 AAATTTTCTTTAG
