gi|00000000|ref|AE016958.1|  Mycobacterium avium subsp. paratuberculosis str. k10, complete 4829781, gc%: 69.30%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
3789622..3794262                   PHAGE_Acidia_6_NC_010152: putative helicase; MAP_3415; phage(gi162329366)            4.02e-05            MycobacteriumaviumsubspparatuberculosisK10MSTPAEPRPSRPSDPLGRFSAITREWFTSTFAAPTTAQAQAWSAIADGHNTLVIAPTGSGKTLAAFLWALDSLAGQSERAPGTRVLYVSPLKALAVDVERNLRTPLAGLTRIAERAGLPAPDISVGVRSGDTPPAVRRQLINRPPDVLITTPESLFLMLTSAARETLAGVQTVIVDEIHAIAGGKRGAHLALSLERLDALREGRPAQRIGLSATVRPPEELARFLSGTAPGARTTVVAPPSAKTVELSVQVPVPDMANLANNTIWPDVENRLVDLIEAHGSTIVFANSRRLAERLTARLNEIHAERSGVELSATANPKVAGGAPAHIMASGQTYGVEPILARAHHGSVSKEQRALVEEDLKRGLLKAVVATSSLELGIDMGAVDLVIQVEAPPSVASGLQRIGRAGHQVGEVSRGVLFPKHRTDLIGCAVTAQRMLAGQIETMRVPANPLDILAQQTVAAAALEPLDADRWFETVRRAAPFATLPRSIYEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFTVYLASEAEKPSRVGELEEEMVYESRPGDVISLAATSWRITEITHDRVLVIPAPGQPARLPFWRGDGVGRPAELGAALGAFTGELAGLSREEFDSRCAALGFDAYAVDNLYGLFDEQRTAAGVVPTDTTLLVERFRDELGDWRVILHSPYGLGVNGPLALAVGRRLRERYGIDEKPTASDDGVVVRLPDTVSDFASDGGDTPPGAELFVFDADEIDPIVTAEVGGSALFASRFRECAARALLLPRRHPGRRSPLWQQRQRAAQLLEVARKYPDFPVVLETVRECLQDVYDVPALVALMAGIAQRRVRVLEVETQRPSPFAASLLFGYVGAFMYEGDSPLAERRAAALSLDSTLLAELLGRVELRELLDPEVVAATARALQHLAPERAARDAEAVADLLRLLGPLTEDEVVARAGGADAVEVRGWLEGLRAARRAVPVSFAGRSWWVAIEDIGRLRDGLGIAVPLGVPAAFTEEVADPLGELLGRYARTHTPFSTAEAAARFGLGLRVTADVLGRLADPSTSQGRLVRGDFVAARPSEPGGVLGAEQWCDADVLRILRRRSLAALRAQVEPVSTAAYGRFLPAWHRVGAAESSRAPGHSGLDGLMSVIEQLAGVRLPASALEPLVLAPRVRDYSPALLDELLATGEVTWSGAGSISGSDGWIALHPSESAPLTLQGPADIELGEAHRAILDVLAGGGGYFFRQLATDGVSDAELKAAVWELVWAGWITGDTFAPVRALLGGGGTRRRSAPAHRAQRPPRLSRYSVAHPQARPADPTVAGRWSLLPPPEPDSTVRAHFQAELLLGRHGVLTRGAVAAEGVAGGFATLYKVLSTFEDAGRCQRGYFIESLGGAQFAVASTVDRLRGFADGVDPQRPEYRAIVLAAADPANPYGAALPWPASSADGARPGRKAGALVVLVDGELAWFLERGGRSLLTFTDDPAAQHAAAAALAGLVSARRVAAILVERIDGVPALAPRGDGAAGNDALTALADAGFARTPRGMRLR
3794265..3795017                   PHAGE_Bacill_SP_10_NC_019487: formamidopyrimidine-DNA glycosylase; MAP_3416; phage(gi418489574)     1.26e-09            MycobacteriumaviumsubspparatuberculosisK10MPEGDTVWHTAAVLREHLLGETLTRCDIRVPRFATVDLTGQVVDEILSRGKHLFIRVGAASIHSHLKMEGSWRVGPRVRVDHRARIVLETGAATAVGVDLGVLQILDRDRDGEAVAHLGPDLLGEDWDPARAAANLAARPQRPIAEALLDQRVLAGIGNVYCNELCFVSGHLPTTPVSAVADPRRLVSRARDMLWLNRFRWNRCTTGDTRNGRQLWVYGRAGQPCRRCGTPIEFDDSGDRVTYWCPSCQR
complement(3795014..3795931)       PHAGE_Synech_S_ShM2_NC_015281: baseplate wedge initiator; MAP_3417c; phage(gi326782360)     6.52e-05            MycobacteriumaviumsubspparatuberculosisK10MAYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLSLHGGGGTGIAQRGLTGFDAVADAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVGLVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFAAVAPVAGTLGVGVACNPSRPVSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARDGTVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFLAHARD
3796027..3796476                   PHAGE_Mycoba_Babsiella_NC_023697: gp40; MAP_3418; phage(gi593775192)                 3.94e-20            MycobacteriumaviumsubspparatuberculosisK10MIRQPVPPRHASIRPSPASSKQRHFCSTGVSQMTSTQIRKRARPRSLVVAGLLPLAGLLGVITTPAHATSADDAFLAALKAKGINYESPDAAVNSGHTVCHELDMGQTPEQVANNVLSSSTLDSYHAGYFVGVSIKAYCPKYAAAAAGS
complement(3796850..3797986)       PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; MAP_3419c; phage(gi589892220)     3.44e-07            MycobacteriumaviumsubspparatuberculosisK10MDFGILPPEVTSALIHAGPGAWSWIEAAGVWQQLSMELEQSASSYTAELAALSTTWQGPSALAMTRALEPYVDWLRITAQQCQEIATSVQTATAAFELTHWTVVHPSLVAANRARLAMLLATNFFGINYPAIAETEAEYHAMWVNNSAAMYRYAATSATAVRLPRFTEPPQVANPSGVSTQAAMVPATNAADSGTQTGVAGTLQAASTAFFDPNTGWFKYWSTWGNQFLAASGFPINLIGVLAQLQTASGFQSLGADVAGGLAEGTAALSAAEVRLVSAVGAAGSSLAPRAALGVGISLGNLTMPPATVGMLGSQAPVQLASAASPLATGAGQPPMLPMTPMRPGGNGTRRRNGRDYDDIEYGAELPGTVMQRPPSAG
complement(3798096..3799235)       PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; MAP_3420c; phage(gi589892220)     1.68e-09            MycobacteriumaviumsubspparatuberculosisK10MMDLFAPPEVTSTLIHTGPGAGSLIEAAAAWQRVAVELENSVSSYASTLSSLIESWDGPSAMAMLQSVQPYLLWLRETAQQSAQLANSAEAAATAFGTVRSTVVHPSVVSANRTRLAQLLATNRFGTNTAAIAETENEYQTMWANNSAALSRYQAASSQATSPLTQFNSPLAVTDPGGTANQQAAVMKASVDSSGSSVGSVLNDLNMPGGFDPNAGWFNYFSTWGNQFISSGFPINLLGVWAQLATAQGVASVGGDIGSGLSEGLGATTASLANAIKGIGAGAVAPSGAMGVGVSLGKLTAPPAVVGLLPGTQTGVQLASAASPLPAAESGFPLMPMMVPPPTTSAGTGWRKRKQQKYEDVAYGREVKGKVMPRNPSAG

#### region 2 ####
4729153..4730157                   PHAGE_Mycoba_HINdeR_NC_021308: esterase/lipase; MAP_4259; phage(gi508179963)         7.14e-05            MycobacteriumaviumsubspparatuberculosisK10MTQRATIEDPYADEDFNTFDGDRALVVTTPDGVPLAVREAGPPDAPLTMVFVHGFCLQMGAFHFQRTRLPEQLGPDVRMVFYDQRGHGRSGEAAPESYTLTQLGRDLQTVLQVVAPRGLVVLVGHSMGGMTVLSHARQFPEQYGRRIVGAALISSAAEGVSRSPLGEILKNPALEAVRVAARSAPKLMHRGRNVSRSLIGPVLRAASFSDLQVSRSLDAFSQRMMNSTPIPTMVGFLDALEHHDETAGLWTLLRVPTLIACGDHDLLTSDEYSRKMAASLPQSELVIVAGASHLALLDKPEAINGGLVRLVRRATPSRAALALRRIGERLWRRG
4730150..4730629                   hypothetical protein; MAP_4260                                                       N/A                 MycobacteriumaviumsubspparatuberculosisK10MAESGTATLPTAQDTAALGARLAEQLRAGDVVVLSGPLGAGKTVLAKGIAAAMDVDGPVTSPSYVLARVHPPRRPGAPTMIHVDLYRLLDHTGNQGADLLGELDSLDLDSDLDDAVVVAEWGEGLVERLAPRHLDIRLERVSGSDVRIATWRWAGGEPS
4730626..4731252                   PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; MAP_4261; phage(gi16129761)     2.26e-12            MycobacteriumaviumsubspparatuberculosisK10MSPLVLALDTSTPAVTAGIVRRDDLSVLAQRITVDARAHAERLTPNVLAALHDSGLNMTDLVAVVVGCGPGPFTGLRAGMATAAAYGHALGIPVHGVCSLDAIGGQTTGDTLVVTDARRREVYWARYRDGVRTDGPAVAAPADVDPGGAEAVAGSPEHARLFGLPVTGPAHPTPAGLVAAVGDWSVRPQPLVPLYLRRPDATPRAARP
4731249..4731719                   RimI; MAP_4262                                                                       N/A                 MycobacteriumaviumsubspparatuberculosisK10MTAGGEPVTVGALTRADARRCAELEAQLFDGDDPWPAAAFHRELASAHNHYVGARVGDTLVGYAGISRLGRVPPYEYEIHTIGVDPAYQGRGIGRLMLDRLLEFADGGVVYLEVRTDNEPAIGLYRSVGFEQIGLRRRYYRISGADAYTMRRKARQ
4731716..4732741                   PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; MAP_4263; phage(gi16130960)     1.20e-73            MycobacteriumaviumsubspparatuberculosisK10MTTILAIETSCDETGVGIARLDADGAVTLLADEVASSVDEHVRFGGVVPEIASRAHLEALGPTMRRALSAAGVTKPDVVAATIGPGLAGALLVGVAAAKAYSAAWGVPFYAVNHLGGHLAADVYQHGPLPECVALLVSGGHTHLLQVRSLGDPIVELGSTVDDAAGEAYDKVARLLGLGYPGGRVLDELARTGDREAIVFPRGMTGPRDAPYAFSFSGLKTAVARYLESHPDAVNADVAAGFQEAVADVLTRKAVRAATDLGVTTLLIAGGVAANSRLRELAEQRCAAAGLTLRIPRPGLCTDNGAMIASFAAHLVAAGAPPSPLDVPTDPGLPVVKAQVS
4732947..4733249                   PHAGE_Serrat_BF_NC_041917: L-shaped tail fiber protein; MAP_4264; phage(gi100266)     2.13e-06            MycobacteriumaviumsubspparatuberculosisK10MAKVNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK
4733338..4734954                   PHAGE_Cellul_phi14:2_NC_021806: chaperonin GroEL; MAP_4265; phage(gi526178751)       7.42e-96            MycobacteriumaviumsubspparatuberculosisK10MSKIIEYDETARRAIEAGVNTLADAVRVTLGPRGRHVVLAKAFGGPAVTNDGVTVAREIDLEDPFENLGAQLVKSVATKTNDVAGDGTTTATVLAQALVKGGLRLVAAGANPIELGAGISKAADAVSEALLASATPVSGKDAIAQVATVSSRDQVLGELVGEAMTKVGVDGVVSVEESSTLNTELEFTEGVGFDKGFLSAYFVTDFDAQQAVLDDPVILLHQEKISSLPDLLPMLEKVAESGKPLLIIAEDIEGEALATLVVNSIRKTLKAVAVKAPFFGDRRKAFLEDLAIVTGGQVINPDTGLLLREVGTEVLGSARRVVVSKDDTIIVDGGGAKDAVANRIKQLRAEIEKTDSDWDREKLQERLAKLAGGVAVIKVGAATETALKERKESVEDAVAAAKAAVEEGIVAGGGSALLQARKALDELRGSLSGDQALGVDVFAEALGAPLYWIASNAGLDGAVAVHKVAELPAGHGLNAEKLSYGDLIADGVIDPVKVTRSAVLNSASVARMVLTTETAVVDKPAEEADDHGHGHHHH
4735049..4736575                   PHAGE_Pelagi_HTVC008M_NC_020484: adenylate/guanylyl cyclase; MAP_4266; phage(gi460042455)     5.76e-23            MycobacteriumaviumsubspparatuberculosisK10MDRIWQWVWDRHGAKYPWVIWAFGFTSMFVTYALWSLVITCYERSSHYLEAVVVTGVGVVLQSLVVLPVRRRFRLMRPVSASDQVDRFQALNETYVWSRTARIRQLWFVPIWAATFFAIVSVLAGAHGMRVVEYVIVGGAMGIVTTLISLHTFMEGSLRPVRAALAGDSGIGDALPRSRPTFAWWLEVSMLSALCNFTTAGMMVGALLGRVSDSPLLPLLIACVATAALAAPVTVGAIVSPALHPIRDLAEGTERVAAGDYTRRVPVVQDDDLGALTASFNRMQAGLTERQRLQAAFGTYVDPALAARLLEQGDDVFTGERREVTVMFVDVRDFTPFAEANSAEDTVARLNALFEIVVPAVVDGGGHVNKFLGDGALAVFGAPNDLADHADAAVSAALLIHRLVAKRFGGVLRIGIGINTGVVIAGTIGGGGKLEFTLIGDAVNVAARVEQLTKTTGDAILVTQQTVDALVSRPPGLSDRGTHALKGKSAPTAVFGLDPAVTPSHRLG

#### region 3 ####
4818485..4819072                   PHAGE_Sinorh_phiM9_NC_028676: DNA-directed RNA polymerase specialized sigma subunit; MAP_4337; phage(gi966199376)     4.29e-10            MycobacteriumaviumsubspparatuberculosisK10MGFGRNGNGDRSDAELLAAHVAGDRYAFGELFVRHQRHLHRLARLTTRSPEDAEDALQDAMLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRLRRTKAHPTVPLEDIYPVADRTAQVETTLAVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLGYLDAGAHAAAEGAAGQA
4819133..4819831                   hypothetical protein; MAP_4338                                                       N/A                 MycobacteriumaviumsubspparatuberculosisK10MATAGNDAADHRNAESDPPLTAELLADLQAGVLDALNRVRREVAALGADPASPPDPPPQVTARVAAALRSAEPVGATPRAAHSARPPLRTARAIAAVAGLGAALAAIGVGTVALLRTPAPAPSTPTDIEHITVSTPPMQIPLSRAEILGLLDRSPDFGPLSDPARRASCLTGLGYPASTPVLGARPVAINARPGVVLVIPGDSPHVLTVYAVSANCSAADTGLLANTEVPRP
4819935..4820945                   PHAGE_Bacill_G_NC_023719: gp344; MAP_4339; phage(gi593777800)                        4.54e-84            MycobacteriumaviumsubspparatuberculosisK10MTADTVHDVIIIGSGPAGYTAALYTARAQLAPVVFEGTSFGGALMTTTEVENYPGFRDGITGPELMDQMREQALRFGADLRMEDVESVSLAGPVKSVTTAEGETVRARAVILAMGAAARYLGVPGEQDLLGRGVSSCATCDGFFFKDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRREEFRASRIMLERARANDKITIVTNKAVEAVEGSETVTGLRLRDTVTGETSTLAVTGVFVAIGHDPRSELVRDVLDTDPDGYVLVQGRTTATSIPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEHAESSAAAQGDATEFPGSTDTLIGAPQ
4820942..4821295                   PHAGE_Dinoro_DFL12phi1_NC_024367: putative host-like protein; MAP_4340; phage(gi658311036)     1.08e-13            MycobacteriumaviumsubspparatuberculosisK10MTDAEKASATIEVSDASFSTDVLASNKPVLVDFWATWCGPCKMVAPVLEEIASERGDHLTVAKLDVDANPETAQNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDAVPNLG
4821429..4822649                   PHAGE_Bacill_PBS1_NC_043027: hypothetical protein; MAP_4341; phage(gi100165)         6.41e-13            MycobacteriumaviumsubspparatuberculosisK10MSSPRREYGDALRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFYTGLVDGYFGLQTHNALMSYQREYGLSADGICGPETLRSLYFLSSRVTGGSPHALREEELVRRSGPKLSGKRIIIDPGRGGADHGMIMQGPSGPISEADVLWDLASRLEGRMTAIGMETFLSRPVNRSPLDAERAATANNVGADLMISLRCEAQKSPAANGVASFHFGNSHGSVSTIGRNLADFIQREVVARTGLRDCRTHGRTWDLLRLTRMPTVQVDVGYVTNPHDRAMLVSTQTRDAIAEGILAAVKRLYLLGKNDRPTGTFTFAELLAHELSVERTSQMGGS
complement(4822663..4823415)       hypothetical protein; MAP_4342c                                                      N/A                 MycobacteriumaviumsubspparatuberculosisK10MSARITPLRLEAFEQLPKHARRCVFWEVDPAVLGNHDHLADAEFEKEAWLSMVMLEWGCCGQVATAIPDERSQAEPPCLGYVFYAPPRAVPRAQRFPTGPVSADAVLLTSMGIEPGPAADDLPHALLARVIDELVRRGVRALEAFGRTPAASELQDPRLVGPDLRPVLEAVGDCSVDHCVMDAEFLKDAGFVVVAPHTYFPRLRLELDKGLGWKAEVEAALERLLESARLEQPVGAASTPANALKTAPPD
complement(4823681..4824667)       PHAGE_Agroba_7_7_1_NC_019519: hypothetical protein; MAP_4343c; phage(gi435844368)     1.65e-08            MycobacteriumaviumsubspparatuberculosisK10MTQPLRKKGGLGRGLASLIPTGPAEGDAGPATLGPRMGDAAADVLIGGPAPQEASPVGAVYREISPADIERNPRQPRQVFDEEALAELVHSIREFGLLQPIVVRAIKESASGARYQIVMGERRWRAAQEAGLATIPAIVRETGDDNLLRDALLENIHRVQLNPLEEAAAYQQLLDEFGVTHDELAARIGRSRPLITNMIRLLKLPIAVQRRVAAGVLSAGHARALLSLEAGPEAQEELATRIVAEGLSVRATEEAVTLANRAGTTTPTPPRRKPIQMPGLQDVADRLSTAFDTRVTVSLGKRKGKIVVEFGSVDDLQRIIDVMAPPKP
complement(4824703..4825806)       PHAGE_Clostr_phiCD146_NC_028958: putative para; MAP_4344c; phage(gi971820185)        1.57e-12            MycobacteriumaviumsubspparatuberculosisK10MTSSGDWPVASSEAREGAATPAPDAPSATHTPAAPIGPGAPSGTRGASAVGSPAPPPTAATAPPSSAAASTSPPANVSRETADEFDTPIGAAAERAMRILHTTYPPLRRPKHRRVFTVANQKGGVGKTTTAVNLAAALALQGLKTLVIDLDPQGNASTALGITDRQSGTPSSYEVLLGEVSVHDALRQSPHNERLFCIPATIDLAGAEIELVSMVARENRLRTALADLDNLDFDCVFIDCPPSLGLLTINALVAAPEVMIPIQCEYYALEGVSQLMRNIEMVKAHLNPQLEVSTVVLTMYDGRTKLADQVAEEVRRYFGSKVLRTVIPRSVKVSEAPGYSMTIIDYDPGSRGAMSYLDASRELAERD
