gi|00000000|ref|AF410775.1|  Staphylococcus aureus pathogenicity island 3, complete sequence. 15953, gc%: 31.41%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1..17                              attL                                                                                 N/A                 TTATTTAGCAGGAATAA
1371..1928                         PHAGE_Staphy_71_NC_007059: ORF024; -; phage(gi66396064)                              6.83e-85            StaphylococcusaureussubspaureusCOLMNKKLLTRTLIASALVLTTVGSGFHSSSNYNGINNVAKASEITDGDLWKNVRDALKEANIIDKTANETVGVTYNLNNGGESSITGTADLDELSNFNNKPINTDSVKRIDLSRINPNGNRFDANDAWKKLTDKLKEKQIVKNGDTVTIHSKDKNDPPISAKVGENYNGNKGLMLNQRDITKITITK
complement(2006..2806)             PHAGE_Strept_315.2_NC_004585: streptococcal superantigen SSA; -; phage(gi28876204)     1.12e-95            StaphylococcusaureussubspaureusCOLMYKRLFISHVILIFALILVISTPNVLAESQPDPKPDELHKSSKFTGLMENMKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSITVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFNNSPYETGYIKFIENENSFWYDMMPAPGDKFDQSKYLMMYNDNKMVDSKDVKIEVYLTTKKK
complement(3133..3684)             PHAGE_Staphy_PT1028_NC_007045: ORF009; -; phage(gi66395173)                          2.36e-129           StaphylococcusaureussubspaureusCOLMSELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKIIDENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPKSGKVQLVYNEHVELIEVPIKPSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGDDEELDKAVKDVSNANPNHTVIVE
complement(3681..4022)             PHAGE_Staphy_PT1028_NC_007045: ORF014; -; phage(gi66395178)                          4.78e-72            StaphylococcusaureussubspaureusCOLMDKKQIKDFVCDYHKRTRSDVLIDDEINTDEFFSIGDENSNEWMADDNIDDHIVKNHLEIIVDRVANDKEFYIFDSLIQGRSFKDISNVLECSEQSVRLWYETLLDKIVEVIE
complement(4025..4552)             PHAGE_Staphy_PT1028_NC_007045: ORF010; -; phage(gi66395174)                          7.30e-120           StaphylococcusaureussubspaureusCOLMKLLKTKNCLYYRNGDNKLSEYQLLTQFNPAFINKKIKMCEFQIESMYHMSASTTTCDEIMGVVSVSYPIEKLVIKIIETKAGLQNYKNRSINNMALLKKVLNHYTEKEQKQVVKYMRSNGRYKPYNVIERLQVDLYQASIKQRSERQKQRNTAIENSKIARVNAYHQSSYVKVV
complement(4603..4821)             unknown; -                                                                           N/A                 StaphylococcusaureussubspaureusCOLMETKCELNNTKKVANAFGLNEEDTNLLINAVDLDIKNNMQEISSELQQSEQSKQKQLGTTLQNLAKQNRIIK
complement(4839..5417)             unknown; -                                                                           N/A                 StaphylococcusaureussubspaureusCOLMKTESYFKEYNQFVIDQQKAIQELKQERNALESKIKIDKSTYKQLIMDGQDDKADNLYQATDADEKKLKALNKRLETKKSVSKEVKYQKTIELLKHQSELSSLYESEKQSALGKLKKVVDAYNEIIDEIEDINDRYEDEHQQYASIYSQEQLYDDKEAREALNGYFRENIFTSYINGNDLPYEHNNKLFLKR
complement(5429..5770)             PHAGE_Staphy_PT1028_NC_007045: ORF015; -; phage(gi66395179)                          2.97e-78            StaphylococcusaureussubspaureusCOLMQSIAEKETYHLPTEHLQVFNVIKNTSNKYITKTKILNQLGYEYNSSNERWLRRVINSLVYDYGYPIGCSYKPSERGYYIITTEQEKQQAMRSIKKLADGSMKRYEALKRIKV
complement(6287..6928)             PHAGE_Staphy_PT1028_NC_007045: ORF008; -; phage(gi66395172)                          1.31e-143           StaphylococcusaureussubspaureusCOLMNIETIVNEFETRAGTLLRYYTGLLERSKVQPCCFKLYNDPFDMVYVMMNSKLFSHVYIKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDMMASQLFEDEYFMYGLQTYAESNNSDVFKCLENGFDTDTLEGIQSSNTDVIANIEMLYQLATGINEPVPELVEGLKLVTEFVQDENATQEDYKALERKLNDLKASYYSLSK
complement(6925..7209)             PHAGE_Staphy_StB27_NC_019914: hypothetical protein; -; phage(gi431809698)            1.94e-11            StaphylococcusaureussubspaureusCOLMNDKEKIYNQLHHDAPIQIMPAPENLFVEYIEDGEVWYSPVVCIALSKAHNINFYDSDDVGCIDKAATCSIKKFNPETGEFEQFSKMAQKEITQ
complement(7211..7573)             PHAGE_Staphy_PT1028_NC_007045: ORF013; -; phage(gi66395177)                          1.14e-13            StaphylococcusaureussubspaureusCOLMNKNQLKSEILEYIKAHAGTSFVEIERVFEENNFDYKGDGAYTSGQHPNVVFWIGWNQEAFDVIAELKKDRRIEMDICEPIVYMVDGKGLDLPIVRSKNIKTDHWLPVTFTISKKETECV
complement(7874..9298)             PHAGE_Staphy_vB_SpsS_QT1_NC_048192: minor tail protein; -; phage(gi100055)           2.35e-89            StaphylococcusaureussubspaureusCOLMIDSRTGVLNANDWKSQLRRSATTQALKKTTTNAEIILCNDESLKGLVQYDAFEKVTKLKRLPYWRSKGDTNYYWADIDTTHVISHIDKLYNVQFSRDLIDTVIEKEAYQNRFHPIKSMIESKSWDGIKRIETLFIDYLGAEDNHYNREVTKKWMMGAVARIYQPGIKYDSMIILYGGQGVGKSTAVSKLGGHWYNQSIKTFKGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQCVFVGTTNNYEFLKDQTGNRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAKVYFDEDPTDKALLLDKEASEMALKVQEAHSEKDALVGEIEEFLERPIPSDYWYRTLEEKRVSAHDVIDQDYIKLYGDGKLIELPNTKPGAYVWRDKVCSMEIWKVMMKRDDQPQQHHLRKIDKALRNTNYCDTVKKQTRYGEGIGKQYGFSVDLASYYKNLKV
complement(9348..10217)            PHAGE_Staphy_PT1028_NC_007045: ORF003; -; phage(gi66395167)                          5.71e-172           StaphylococcusaureussubspaureusCOLMNEIKLKYDTQVSVVHYESLDSRSFKSFSMPKWSKLVNKLSVPIEANYKYARGVAVYGDIKDNTNDHGEIIKKHRNDKNVIYRNVIVLDYDEINDVKQLHDAISSVLSSVAWYWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMDVDMLEQWSKEYKQSNGSPNIKGYTRRDSAYWRDIAFGVSEGERNSTLASITGYLLRRYVDPNLVYGLVSAWASVCKPPINQSEVNNTFKSILKKDSKNS
complement(10281..10601)           PHAGE_Staphy_PT1028_NC_007045: ORF016; -; phage(gi66395180)                          2.76e-28            StaphylococcusaureussubspaureusCOLMNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLHVYLKEFSELIQKFHEIEKASSENFDEESDDAKNSIKVAE
complement(10604..10813)           PHAGE_Staphy_PT1028_NC_007045: ORF021; -; phage(gi66395185)                          6.99e-40            StaphylococcusaureussubspaureusCOLMNNEQKEVIEHLVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
complement(10806..10973)           unknown; -                                                                           N/A                 StaphylococcusaureussubspaureusCOLMDVGGKAMKMYLAYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE
complement(10964..11236)           PHAGE_Staphy_PT1028_NC_007045: ORF019; -; phage(gi66395183)                          2.40e-55            StaphylococcusaureussubspaureusCOLMSRTKLHDVPAKENTITEPKQVVVNPLFAKPNALASIFGISYSSVNRILKEWEKDSKGVDDLYYSLSSTMIVISIPRFEEYMKARHKKWM
complement(11229..11429)           PHAGE_Lactob_A2_NC_004112: Cro protein; -; phage(gi22296546)                         6.69e-23            StaphylococcusaureussubspaureusCOLMAHKMGWKTRTPYAKRENGIVDIGANEFIKMAKILGYETNNLDIFFTNNVPRKERKNILKGGELNV
11685..12017                       PHAGE_Lactoc_98201_NC_031064: hypothetical protein; -; phage(gi100004)               4.43e-28            StaphylococcusaureussubspaureusCOLMRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTREFPLNRAEDFAKVLGIKTEYLLGFAEREESTKQDTIAAHLDGDFTEEELIEIRKYAELVRKAHRNQ
12029..12487                       PHAGE_Staphy_55_NC_007060: ORF028; -; phage(gi66396141)                              2.10e-83            StaphylococcusaureussubspaureusCOLMYLYEKMVIENKEIPIDDGKSLGNFEGLYDNGVILINKNLSERRKAEVLYEELAHHKLTYGNILDQSKFNNRKFENYARRHGFISAVPLREIVEAYNYGVRNLYELSEYLQLSEEYILEAIEQYKKIYGIGTHYGEYSITFEPLRVFKYKEI
12504..12935                       PHAGE_Staphy_37_NC_007055: ORF039; -; phage(gi66395766)                              1.12e-47            StaphylococcusaureussubspaureusCOLMRKLLGLALASTLILGACGSNDGDKKEESKSYTTNDIVKGFKDNKLNVINEKEMTREDFGLAPMKTDEAKMFVVQDDKNARVMKFKNSDDLKQTKKYYDELGKESAAFYSHTHSKGKFLIQMNGDIDDATFNKYKNSMDKTLK
13005..13733                       PHAGE_Staphy_P1105_NC_048636: hypothetical protein; -; phage(gi100021)               3.83e-33            StaphylococcusaureussubspaureusCOLMNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYDDNKTIDTENFHLDVEISYEKTE
13757..14485                       PHAGE_Staphy_SA1014ruMSSAST7_NC_048710: hypothetical protein; -; phage(gi100059)     1.11e-28            StaphylococcusaureussubspaureusCOLMKKLISILLINIIILGVSNSASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
14574..15794                       PHAGE_Staphy_PT1028_NC_007045: ORF002; -; phage(gi66395166)                          2.56e-127           StaphylococcusaureussubspaureusCOLMWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
15937..15953                       attR                                                                                 N/A                 TTATTTAGCAGGAATAA
