gi|342243454|ref|AFGH00000000| Campylobacter fetus subsp. venerealis NCTC 10354 CFV354_1, whole [asmbl_id: NC_000000].1858789, gc%: 33.23%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
526642..526655                     attL                                                                                 N/A                 ATTTTATATGCTTC
complement(526706..527680)         PHAGE_Rhodov_RS1: integrase; PP_00582; phage(gi472342882)                            2e-07               MYDWLRRYENGGIKALVDTRGGNKPLSVELLGYKEKIDELIMASGGKITAYNVYNRFHHTCVQMGLLTHD
complement(527673..528410)         hypothetical; PP_00583                                                               N/A                 LQSNIAKDSFTKRESGINDENNITNEQNGANSDRGLDEYSEYRRDKQDNQITNIAKCDKTGNQTQEKSMD
complement(528789..528950)         hypothetical; PP_00584                                                               N/A                 MKKPTIAKLVKSKTKYDLKGYCEMRGLSHLSLYKGYVAKKARKVLERDGIKVA
529196..529348                     hypothetical; PP_00585                                                               N/A                 MDFDILAQNIRFLLKKHKWSEDELVKRSGVGKSTIQLYKSKKVKTQLLIN
529414..529977                     PHAGE_Salmon_ST64B: regulatory protein; PP_00586; phage(gi23505482)                  2e-10               MSISQKENISQNVHKFPKMSISKSNLSSNEPLNTPNLKKSQNEIHINIKEDTVYVPFFKDGAVSAGFGTE
complement(529985..530110)         hypothetical; PP_00587                                                               N/A                 LILAIFESIFSKIELANLTLHFFTFSFHKLYKLLKNRLKAH
530362..531525                     PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; PP_00588; phage(gi414087138)     6e-09               LGVGNDTVDINETSAVDALKTVNLSGLTNYATSTTKLKAAASDTLTFNGGSGDDSVEVSGTAIASLKVIG
531753..532733                     surface array protein [Campylobacter fetus subsp. fetus 82-40] gi|118475657|ref|YP_891682.1|;  PP_00589     2e-149              MKYKLFIFASLFILFFTFTNYVIVYLYIFDLRSNGVFSFKNFLLETTTNYNRIIIDSGSNSVHAIDSTMF
complement(532767..532892)         hypothetical; PP_00590                                                               N/A                 LILKSVLQVPNTLERSTFTLSAAISPAFTEVLASPAFRVHR
complement(532969..533610)         PHAGE_Strept_PH15: putative transcriptional repressor; PP_00591; phage(gi190151419)     1e-07               MDMIDITERLKDILATDGKSVKDVDVANALGINPNAYAQMKFRNSVPYEQIIYFLAKRKISINLFFFGQE
533762..534226                     hypothetical protein HMPREF0868_1224 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289449702|ref|YP_003475501.1|;  PP_00592     1e-11               MIVTVNKYGDSIYKSISEYKDFDFKANTCVAVIKIEKVNPNKRGSITTIEERIIKLSQRALKWELSRCED
534204..534611                     PHAGE_Lactob_Lj965: hypothetical protein Ljo_0305; PP_00593; phage(gi41179237)       1e-22               MIGRGMSKIILSIRPEYTKRILDGDKKYEYRRVLAKKDVKTILIYCTHPLMKVVGEVEVEGVISTSPCDM
complement(534649..535461)         PHAGE_Clostr_phiSM101: putative modification methylase dpniia; PP_00594; phage(gi110804053)     2e-45               MQRTTLKAPLSSYAELRPRTTRLRAPFGWVGGKALLAKEIIPLMPEHSRYVEVFGGALSVFYQKEPSKIE
complement(535555..536109)         PHAGE_Pseudo_AF: putative endolysin; PP_00595; phage(gi431810312)                    4e-07               MANFKKSMGVLMRLEFGSSSDVLHKNKTEQGLTFMGIYQGAHPSWSGWNIVKNVLSANIDIKNASEVLYA
complement(536130..536441)         hypothetical; PP_00596                                                               N/A                 LNWLEKMMDSAGVYKYVIFIGLIGGILGMVQKEELKKCKSSLKCKIFGLLFGCFSAMFAGYIGFEVAYFF
complement(536457..536585)         hypothetical; PP_00597                                                               N/A                 MVKLKKYHIIVKLPLFIRLMLKKGIVRFGVFLLPYFAYLAGI
complement(536551..536823)         hypothetical; PP_00598                                                               N/A                 MAVLNNGLQTMELGATAWRIIINDNFTKLYTKNEIDTKLSGGNTEISAKKLKVANVELSGGLQASGELGQ
complement(536833..539055)         PHAGE_Pseudo_YuA: structural phage protein; PP_00599; phage(gi162135158)             1e-28               MWFAAFLVVAFAAAFFLMPTAKMQDAKAAGFDDFTYPTNSNSRLIPEIFGTVECHGNIIYAGQLSSYAIE
complement(539057..539761)         PHAGE_Pseudo_YuA: structural phage protein; PP_00600; phage(gi162135155)             5e-17               MSEVYTFSLGAKEIIYDSDTSPITRDEINKEFDNEEANISMPLDLFPATEFRVFNPATTVWCKIVKNGVM
complement(539754..540296)         hypothetical; PP_00601                                                               N/A                 MEIFSFIPLRDIGVSINNSYSLIGKEYRNVSKYAPSDTRLSFSLSFSFDKAKLRAFESFFISKQARVGSF
complement(540296..541783)         PHAGE_Pseudo_YuA: structural phage protein; PP_00602; phage(gi162135154)             7e-06               MIFADDRSIITSFSFLGYSIVIGGVLSYMIRLNHNFTSGALLWAVRRTNDVFRPDPIQKYSYAPVGDFYN
553656..553669                     attR                                                                                 N/A                 ATTTTATATGCTTC

#### region 2 ####
1469887..1469899                   attL                                                                                 N/A                 CTCTTTAGCGTTT
1470190..1472778                   PHAGE_Rhodov_RS1: integrase; PP_01644; phage(gi472342882)                            1e-11               MWVDSKTAADVFGVKYDALVKSVKRAEKQGKKFCTINGKILPFKRINGSRGGSSGKILQIWLDEQSENKL
1473059..1474012                   PHAGE_Rhodov_RS1: transposase; PP_01645; phage(gi472342883)                          5e-06               MSKFEDIRSELSLYLTDEEVSASALARSIGVSPGAISQFKKGEYKGDNEGLAKKIKAYLNSQNAKKNAPV
1474061..1474324                   hypothetical protein CJE0266 [Campylobacter jejuni RM1221] gi|57237276|ref|YP_178289.1|;  PP_01646     5e-07               MKRTMRLVYVASPYASISVAKDENQRRQYAKKIAIRECQKVIGAGYEPISPVLAFCDVFDESDRERVMNA
1474275..1474400                   hypothetical; PP_01647                                                               N/A                 LNYYQAAHIYYAKSVYSKDSAGMNAEKRYARELGITELEFE
1474393..1474509                   hypothetical; PP_01648                                                               N/A                 LNKKEKIWQVSIKSWLISLKKINKREERIKNASKNRKK
1474484..1474897                   hypothetical protein DvMF_0717 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218885821|ref|YP_002435142.1|;  PP_01649     2e-07               MLVKIGKNETKIHDKSLENAVDEFAYLKRKIDSLNDELKAYKDVIANKANELLGDSDALSIGFESISGNR
1474953..1475111                   hypothetical; PP_01650                                                               N/A                 MKYYKICKKCKCVEPATYSRCPACGYRLSILEIQSKDVTKDNKNKKELKCVI
1475101..1475304                   hypothetical; PP_01651                                                               N/A                 VLYDGKRDRKRKKSKRLSDLAEILSDLDEMIDELCEAIEVEDEEEIYKSAKELVEYYIKTKKKLNLD
1475343..1475813                   hypothetical; PP_01652                                                               N/A                 MSFWSIKMDYELGNIRPKLDRHKLGLGLVKTGLKESLHKFIKNVICEDEKLTIVFSHNMAKFEFEQSKEQ
1475815..1476252                   hypothetical protein CJS3_0697 [Campylobacter jejuni subsp. jejuni S3] gi|384443022|ref|YP_005659274.1|;  PP_01653     6e-12               MTEKQAILRKQLLSKIHTTKRYKELKENDAWEMFLDCHFRCSTSAELSIKELYACLDLLHGKLIAIEEID
1476249..1476434                   hypothetical protein CJS3_0698 [Campylobacter jejuni subsp. jejuni S3] gi|384443023|ref|YP_005659275.1|;  PP_01654     2e-06               MICPFCANDKTRVVATIKGLENRRFRYCFKCKKTFETNETVLIKERDWQELKEYKEEIKDV
1476427..1476834                   hypothetical; PP_01655                                                               N/A                 MYDKDLLTRLLKSKIAKTKSKDEIIDELLMGLSKQNAKSLKAALDELFLMIYDNYDNANLKILVENKINA
1476837..1477190                   hypothetical protein CFF8240_0671 [Campylobacter fetus subsp. fetus 82-40] gi|118474781|ref|YP_891846.1|;  PP_01656     6e-44               MKNTSPLSKDEVVKHIDKTGVERVWKKSNDHIAKKHKETTSANVVKALNSINTTAKNKDNRYINAFSDNG
1477166..1477465                   hypothetical protein CFF8240_0672 [Campylobacter fetus subsp. fetus 82-40] gi|118475125|ref|YP_891847.1|;  PP_01657     2e-32               MENRKFVIEFYGIEWFIDLPSHIDDGDSGLKIIQPITRIRDKRIVRIFDIFTPSKENIDEAKEYKEFYEI
1477506..1477712                   hypothetical protein CFF8240_0673 [Campylobacter fetus subsp. fetus 82-40] gi|118474672|ref|YP_891848.1|;  PP_01658     2e-30               MTIIEAFSKTKTLQNQNRNAVVKIVKKNYSGYDVQIEPVELTVIKNSLEMISQNANSFMANVNAKYGK
complement(1478040..1478510)       PHAGE_Tsukam_TPA2: tail component; PP_01659; phage(gi326425049)                      1e-11               MNKIFKNFMFRVGAEVVNESKAIAPFKTGNLKKDIQVFKADQTSVTIGNSKLAPYAKFVHFGTKPHMIKV
complement(1478507..1478743)       PHAGE_Pseudo_B3: large terminase subunit; PP_01660; phage(gi56692599)                2e-06               LKTLNLKKAFEDKLIKIPNDPLLIADIHAIKRTIGAKSFKYDAKRNEYGHADRFWALALALSHIGVVRAK
complement(1478724..1478999)       PHAGE_Aeromo_phiO18P: putative portal protein; PP_01661; phage(gi148727149)          1e-05               MRLKKDRRLFQKVNEKIVELEGYHFFYYSPNSRYYGEPDYLAALQQILINQKADLYNDKFFDNGARPDLA
complement(1479082..1479342)       phage portal protein [Campylobacter fetus subsp. fetus 82-40] gi|118474711|ref|YP_891825.1|;  PP_01662     7e-37               MNRFFIEKDAKQSLQIGEETTSTSGIIEPFFSFNQLLEAYYANVYHRRAIKIKAGLLSQIETEESDLEKF
1479474..1480211                   PHAGE_Vibrio_SIO_2: hypothetical protein; PP_01663; phage(gi371496432)               9e-10               MAKRLKDIAITHISLVKEGANGKSVIYKSKDALEDYFRSVKIAKNDTEKGIVYGIVYSPDEIDTQGDAAS
1480211..1481146                   PHAGE_Natria_PhiCh1: capsid protein gpE; PP_01664; phage(gi22091115)                 7e-08               MAKHLRELLKATGTINAVDMYSTSTLRPEVSNKIIKTIIDKSDFLSKVTLDKTKKLSKSFDTWNLASGIL
1481136..1481435                   hypothetical protein CFF8240_0653 [Campylobacter fetus subsp. fetus 82-40] gi|118474093|ref|YP_891828.1|;  PP_01665     1e-48               MEFEKLKESLEARAKASLLNPNEITAEALEFSTNETLEFCKGKEVQSWAVMDFAMTRLKIYLKIELSEAD
1481653..1481784                   hypothetical protein CFF8240_0654 [Campylobacter fetus subsp. fetus 82-40] gi|118474842|ref|YP_891829.1|;  PP_01666     6e-17               VFKLGANLGENLFKNCELIANKDSSLYTYAINFTINLNGEKNE
1481777..1482475                   hypothetical protein CFF8240_0655 [Campylobacter fetus subsp. fetus 82-40] gi|118475661|ref|YP_891830.1|;  PP_01667     9e-125              MSKTTRLAAGEIRFAPYLNDGTLGEEIVLGYNQRATLSRTAETKELLSNDESLGQSVAELETKVTYEFST
1482465..1482929                   hypothetical protein CFF8240_0656 [Campylobacter fetus subsp. fetus 82-40] gi|118474679|ref|YP_891831.1|;  PP_01668     8e-78               MKTRYPFELKIDDKTYALEFVEINKSSAKELAKEIKKFSDEIEKIEIIRDEIEHTKATIEINKELANSLI
1482959..1483174                   hypothetical protein CFF8240_0658 [Campylobacter fetus subsp. fetus 82-40] gi|118474178|ref|YP_891832.1|;  PP_01669     6e-35               MSPAEFGLSEYESMLLGGLNLSAGFEVGFGASYCKCDSLVLKEYCKNCGIDFLWAYSVFKRYANVLNRVE
complement(1483171..1483344)       hypothetical protein CFF8240_0657 [Campylobacter fetus subsp. fetus 82-40] gi|118474401|ref|YP_891833.1|;  PP_01670     5e-26               MEDIKKFLWIIFVIILAVGIIANIEEMYVQLISFIVLFPFYIWLDYKLNPHKYKKDS
1483389..1485029                   PHAGE_Cronob_ENT39118: phage tail tape measure protein; PP_01671; phage(gi431811045)     2e-37               MANDDLKIKITIDTDTKQVIVARNEVNKLGSSLLGTDTAANGLKNSLRSAVYSAAGLIGVSIGIKELASS
1486225..1486237                   attR                                                                                 N/A                 CTCTTTAGCGTTT
