gi|00000000|ref|AJTM00000000.1|  Bifidobacterium longum subsp. longum 44B, whole genome shotgun 2559217, gc%: 59.71%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(870807..871862)         PHAGE_Lactob_Lv_1_NC_011801: integrase; HMPREF1312_2321; phage(gi219563220)          8.12e-08            [Bifidobacteriumlongumsubsp.longum44B]
complement(871859..872824)         PHAGE_Gordon_GMA5_NC_030907: hypothetical protein; HMPREF1312_2322; phage(gi100017)     1.79e-05            [Bifidobacteriumlongumsubsp.longum44B]
complement(872821..874023)         PHAGE_Thermu_P7426_NC_009804: phage XerD-like integrase; HMPREF1312_2323; phage(gi157265417)     4.03e-09            [Bifidobacteriumlongumsubsp.longum44B]
874159..875340                     PHAGE_Entero_If1_NC_001954: hypothetical protein; HMPREF1312_2345; phage(gi9630756)     9.66e-26            [Bifidobacteriumlongumsubsp.longum44B]
complement(875341..875557)         hypothetical protein; HMPREF1312_2006                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(875633..876895)         PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; HMPREF1312_2007; phage(gi371496158)     1.92e-12            [Bifidobacteriumlongumsubsp.longum44B]
complement(876899..877735)         ABC-2 type transporter; HMPREF1312_2008                                              N/A                 [Bifidobacteriumlongumsubsp.longum44B]
877946..878968                     PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; HMPREF1312_2009; phage(gi100279)     2.29e-39            [Bifidobacteriumlongumsubsp.longum44B]
879021..880451                     PHAGE_Escher_phAPEC8_NC_020079: putative dTDP-4-dehydrorhamnose reductase; HMPREF1312_2010; phage(gi448260370)     4.44e-27            [Bifidobacteriumlongumsubsp.longum44B]
880448..881353                     PHAGE_Escher_phAPEC8_NC_020079: putative glucose-1-phosphate thymidylyltransferase; HMPREF1312_2011; phage(gi448260372)     1.04e-122           [Bifidobacteriumlongumsubsp.longum44B]
complement(881443..882252)         PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; HMPREF1312_2012; phage(gi145708108)     8.87e-10            [Bifidobacteriumlongumsubsp.longum44B]
complement(882521..884425)         PHAGE_Bacill_AR9_NC_031039: prohead core protein; HMPREF1312_2013; phage(gi100194)     2.49e-08            [Bifidobacteriumlongumsubsp.longum44B]
complement(884644..886362)         PHAGE_Gordon_Nymphadora_NC_031061: hypothetical protein; HMPREF1312_2014; phage(gi100038)     4.62e-16            [Bifidobacteriumlongumsubsp.longum44B]
complement(886503..886652)         hypothetical protein; HMPREF1312_2015                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
886736..887764                     PHAGE_Entero_SfV_NC_003444: bactoprenol glucosyltransferase; HMPREF1312_2016; phage(gi19549012)     1.17e-56            [Bifidobacteriumlongumsubsp.longum44B]

#### region 2 ####
1488807..1488829                   attL                                                                                 N/A                 GTAGCGGGGCATGGATTTGAACC
1488940..1489770                   PHAGE_Mycoba_Halo_NC_008202: integrase; HMPREF1312_1367; phage(gi109392319)          5.69e-62            [Bifidobacteriumlongumsubsp.longum44B]
complement(1489759..1490520)       PHAGE_Arthro_BarretLemon_NC_031252: hypothetical protein; HMPREF1312_1368; phage(gi100021)     2.65e-11            [Bifidobacteriumlongumsubsp.longum44B]
complement(1490622..1490978)       holin family protein; HMPREF1312_1369                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(1490995..1491651)       hypothetical protein; HMPREF1312_1370                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(1491648..1493195)       hypothetical protein; HMPREF1312_1371                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(1493201..1495276)       PHAGE_Leucon_Ln_8_NC_027377: tail tape measure protein; HMPREF1312_1373; phage(gi849254654)     4.78e-87            [Bifidobacteriumlongumsubsp.longum44B]
1495265..1495402                   hypothetical protein; HMPREF1312_1372                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(1495439..1495720)       hypothetical protein; HMPREF1312_1374                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(1495724..1496110)       PHAGE_Arthro_Decurro_NC_028692: hypothetical protein; HMPREF1312_1375; phage(gi966201226)     2.87e-24            [Bifidobacteriumlongumsubsp.longum44B]
complement(1496107..1496529)       PHAGE_Rhodoc_RRH1_NC_016651: putative tail protein; HMPREF1312_1376; phage(gi372449810)     7.13e-14            [Bifidobacteriumlongumsubsp.longum44B]
complement(1496541..1496921)       hypothetical protein; HMPREF1312_1377                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(1496918..1497250)       hypothetical protein; HMPREF1312_1378                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(1497253..1498860)       PHAGE_Pseudo_Pq0_NC_029100: gene transfer agent prohead protease; HMPREF1312_1379; phage(gi985760538)     4.74e-12            [Bifidobacteriumlongumsubsp.longum44B]
complement(1498857..1500092)       PHAGE_Strept_TG1_NC_018853: putative portal protein; HMPREF1312_1380; phage(gi410491911)     1.09e-32            [Bifidobacteriumlongumsubsp.longum44B]
complement(1500092..1501531)       PHAGE_Rhodoc_RRH1_NC_016651: terminase large subunit; HMPREF1312_1381; phage(gi372449802)     4.79e-42            [Bifidobacteriumlongumsubsp.longum44B]
complement(1501521..1501832)       hypothetical protein; HMPREF1312_1382                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(1502001..1502720)       PHAGE_Rhodoc_RRH1_NC_016651: HNH endonuclease; HMPREF1312_1383; phage(gi372449820)     1.08e-05            [Bifidobacteriumlongumsubsp.longum44B]
1506524..1506546                   attR                                                                                 N/A                 GTAGCGGGGCATGGATTTGAACC

#### region 3 ####
1991728..1992081                   PHAGE_Arthro_vB_ArS_ArV2_NC_022972: HNH endonuclease; HMPREF1312_1267; phage(gi563398111)     9.09e-26            [Bifidobacteriumlongumsubsp.longum44B]
1992216..1992656                   PHAGE_Mycoba_OkiRoe_NC_024366: terminase small subunit; HMPREF1312_1268; phage(gi658310899)     3.68e-07            [Bifidobacteriumlongumsubsp.longum44B]
1992625..1994088                   PHAGE_Arthro_vB_ArS_ArV2_NC_022972: terminase; HMPREF1312_1269; phage(gi563398113)     4.83e-126           [Bifidobacteriumlongumsubsp.longum44B]
1994085..1995587                   PHAGE_Arthro_vB_ArS_ArV2_NC_022972: portal protein; HMPREF1312_1270; phage(gi563398114)     5.19e-58            [Bifidobacteriumlongumsubsp.longum44B]
1995625..1996797                   PHAGE_Mycoba_Phantastic_NC_024148: capsid maturation protease; HMPREF1312_1271; phage(gi640885278)     5.73e-11            [Bifidobacteriumlongumsubsp.longum44B]
1997050..1997559                   PHAGE_Mycoba_DS6A_NC_023744: gp10; HMPREF1312_1272; phage(gi609252397)               2.62e-06            [Bifidobacteriumlongumsubsp.longum44B]
1997594..1998490                   PHAGE_Mycoba_Halo_NC_008202: capsid protein; HMPREF1312_1273; phage(gi109392294)     1.93e-51            [Bifidobacteriumlongumsubsp.longum44B]
1998490..1998813                   hypothetical protein; HMPREF1312_1274                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
1998872..1999291                   PHAGE_Gordon_GMA4_NC_030939: hypothetical protein; HMPREF1312_1275; phage(gi100009)     2.80e-09            [Bifidobacteriumlongumsubsp.longum44B]
1999278..1999598                   hypothetical protein; HMPREF1312_1276                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
1999602..1999847                   hypothetical protein; HMPREF1312_1277                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
1999889..2000248                   hypothetical protein; HMPREF1312_1278                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2000270..2001130                   PHAGE_Entero_phi80_NC_021190: major tail protein; HMPREF1312_1279; phage(gi824479592)     6.76e-08            [Bifidobacteriumlongumsubsp.longum44B]
2001226..2001615                   hypothetical protein; HMPREF1312_1280                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2001837..2001992                   hypothetical protein; HMPREF1312_1281                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2002038..2004761                   PHAGE_Propio_PHL060L00_NC_022338: putative tape measure protein; HMPREF1312_1282; phage(gi543171461)     1.13e-60            [Bifidobacteriumlongumsubsp.longum44B]

#### region 4 ####
2007468..2007482                   attL                                                                                 N/A                 GGCGACGTGACCCGC
complement(2011126..2011989)       PHAGE_Clostr_phiCD211_NC_029048: Phage integrase family prophage LambdaCh01; HMPREF1312_1292; phage(gi981220898)     6.54e-29            [Bifidobacteriumlongumsubsp.longum44B]
2012071..2012427                   PHAGE_Mycoba_Larenn_NC_028877: minor tail protein; HMPREF1312_1293; phage(gi971751434)     5.58e-05            [Bifidobacteriumlongumsubsp.longum44B]
2012440..2012826                   PHAGE_Geobac_E3_NC_029073: holin-like protein; HMPREF1312_1294; phage(gi985758388)     4.65e-10            [Bifidobacteriumlongumsubsp.longum44B]
2012833..2013546                   PHAGE_Paenib_HB10c2_NC_028758: N-acetylmuramoyl-L-alanine amidase CwlA precursor; HMPREF1312_1295; phage(gi971740669)     1.57e-11            [Bifidobacteriumlongumsubsp.longum44B]
2013913..2014428                   PHAGE_Brevib_Sundance_NC_028749: putative transcriptional regulator; HMPREF1312_1296; phage(gi971482705)     1.16e-06            [Bifidobacteriumlongumsubsp.longum44B]
2014540..2014773                   PF11248 family protein; HMPREF1312_1297                                              N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2015011..2016267                   PHAGE_Mycoba_Mindy_NC_029093: RecA; HMPREF1312_1298; phage(gi985759878)              1.16e-152           [Bifidobacteriumlongumsubsp.longum44B]
2019251..2019265                   attR                                                                                 N/A                 GGCGACGTGACCCGC

#### region 5 ####
2216153..2216164                   attL                                                                                 N/A                 GGGAGTCGTGGG
complement(2225096..2225600)       PROPHAGE_Escher_CFT073: transposase insI; HMPREF1312_2351; phage(gi26250328)         6.06e-56            [Bifidobacteriumlongumsubsp.longum44B]
2225601..2225718                   hypothetical protein; HMPREF1312_0497                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2225705..2226097                   hypothetical protein; HMPREF1312_0498                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2226094..2226492                   hypothetical protein; HMPREF1312_0499                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2226479..2227486                   PHAGE_Gordon_GMA4_NC_030939: hypothetical protein; HMPREF1312_0500; phage(gi100040)     7.61e-25            [Bifidobacteriumlongumsubsp.longum44B]
2227503..2228411                   PHAGE_Mycoba_Enkosi_NC_028936: hypothetical protein; HMPREF1312_0501; phage(gi971757661)     2.24e-17            [Bifidobacteriumlongumsubsp.longum44B]
2228680..2230971                   PHAGE_Rhodoc_REQ1_NC_016655: primase/polymerase; HMPREF1312_0502; phage(gi372450093)     6.95e-36            [Bifidobacteriumlongumsubsp.longum44B]
2231178..2231549                   hypothetical protein; HMPREF1312_0503                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2231546..2231770                   hypothetical protein; HMPREF1312_0504                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2231774..2231968                   hypothetical protein; HMPREF1312_0505                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2231949..2232191                   hypothetical protein; HMPREF1312_0506                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2232318..2232329                   attR                                                                                 N/A                 GGGAGTCGTGGG
2232341..2232697                   hypothetical protein; HMPREF1312_0507                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2232746..2233498                   hypothetical protein; HMPREF1312_0508                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(2233554..2233757)       PHAGE_Mycoba_KayaCho_NC_022061: hypothetical protein; HMPREF1312_0509; phage(gi530546079)     6.94e-16            [Bifidobacteriumlongumsubsp.longum44B]
complement(2233747..2233917)       hypothetical protein; HMPREF1312_0510                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2234896..2235396                   PHAGE_Strept_phiSASD1_NC_014229: gp21; HMPREF1312_0511; phage(gi298103486)           4.10e-07            [Bifidobacteriumlongumsubsp.longum44B]
2235409..2237028                   PHAGE_Strept_phiSASD1_NC_014229: gp22; HMPREF1312_0512; phage(gi298103487)           5.13e-170           [Bifidobacteriumlongumsubsp.longum44B]
2237039..2238496                   PHAGE_Mycoba_AnnaL29_NC_022087: portal protein; HMPREF1312_0513; phage(gi530787074)     1.67e-80            [Bifidobacteriumlongumsubsp.longum44B]
2238534..2239397                   PHAGE_Strept_phiSASD1_NC_014229: gp24; HMPREF1312_0514; phage(gi298103489)           5.26e-12            [Bifidobacteriumlongumsubsp.longum44B]
2239485..2240057                   PHAGE_Gordon_Emalyn_NC_031234: hypothetical protein; HMPREF1312_0515; phage(gi100006)     1.26e-11            [Bifidobacteriumlongumsubsp.longum44B]
2240085..2241062                   PHAGE_Rhodoc_REQ3_NC_016654: major capsid protein; HMPREF1312_0516; phage(gi372450010)     8.01e-141           [Bifidobacteriumlongumsubsp.longum44B]
2241065..2241277                   PHAGE_Rhodoc_REQ3_NC_016654: hypothetical protein; HMPREF1312_0517; phage(gi372450011)     6.14e-06            [Bifidobacteriumlongumsubsp.longum44B]
2241274..2241495                   head fiber domain protein; HMPREF1312_0518                                           N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2241500..2241922                   PHAGE_Mycoba_Violet_NC_023695: gp16; HMPREF1312_0519; phage(gi593774837)             4.43e-15            [Bifidobacteriumlongumsubsp.longum44B]
2241933..2242355                   hypothetical protein; HMPREF1312_0520                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2242352..2242729                   hypothetical protein; HMPREF1312_0521                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2242729..2243145                   hypothetical protein; HMPREF1312_0522                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2243169..2243687                   hypothetical protein; HMPREF1312_0523                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2243791..2244300                   hypothetical protein; HMPREF1312_0524                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2244411..2244623                   hypothetical protein; HMPREF1312_0525                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2244639..2248010                   PHAGE_Staphy_StB20_NC_019915: tail tape measure protein; HMPREF1312_0526; phage(gi431809778)     4.95e-53            [Bifidobacteriumlongumsubsp.longum44B]
2247997..2248851                   hypothetical protein; HMPREF1312_0527                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2248818..2250374                   hypothetical protein; HMPREF1312_0528                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2250374..2250625                   hypothetical protein; HMPREF1312_0529                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
2250622..2251404                   hypothetical protein; HMPREF1312_0530                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(2251401..2251652)       hypothetical protein; HMPREF1312_0531                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(2251761..2252009)       hypothetical protein; HMPREF1312_0532                                                N/A                 [Bifidobacteriumlongumsubsp.longum44B]
complement(2252325..2253128)       PHAGE_Clostr_phiCD211_NC_029048: Phage integrase family prophage LambdaCh01; HMPREF1312_0533; phage(gi981220898)     1.04e-18            [Bifidobacteriumlongumsubsp.longum44B]
