gi|00000000|ref|AM889137.1|  Neisseria meningitidis alpha153, *** SEQUENCING IN PROGRESS ***, 2108055, gc%: 51.40%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
63620..63699                       attL                                                                                 N/A                 TGTTTTTCAGTTTAAGCCATGAATGTGATTAGGCTCCTTATGCAGATGGCGTTACCAATAACGGCTGCTGTACGGATTGT
76606..77061                       PHAGE_Paenib_Tripp_NC_028930: transposase; NME_0090; phage(gi971756982)              1.18e-13            Neisseriameningitidisalpha153MARTAITDNIWEQLQTTMKAHGCHQWKNDRTVMEAILWKLRTGAPWRDIPIELGSWKTAYNRFNRWSKKGLWQNFFLIYEKKLTKNGYSSTEVMYGVINMQVELGVVSIEQLDKAVAETRQKYTYVWTRMEIRSILKSLGVTCTTVKLQTT
complement(77777..78835)           hypothetical protein predicted by Glimmer/Critica; NME_0091                          N/A                 Neisseriameningitidisalpha153MKNKLTLRYFKITRCGYWSGSSKEPNHYEDLLKTLTHLETYVKGKTIEETGISRDDKEPSTFLLDICKKNGLWLLAFWNPAAESSSDEIVSLNMKSKLGQVDSSPVTAGNGKTFGFVSYFLIWPEHNFYSTILSPNATLAGRTEFEEYMLNFLWIDPNFIEKTTYEETSTDGIIHTMERTNFKLPLKINGTPVPRFAGKLAKSPSEKEYVISNYDQVTQVHNQCTVKVTSGQSSSGILKKMLPSFFGSTELFAPLKTIRVNHSVSAAFENKSNLKDWIEDWEKNSFDLDKDDCGFKLKNDDKIYWIRGNVIKCELDVNLHKENGIYPAAKILDIIDQRKDYVLNEFKLSDDS
complement(78976..79536)           hypothetical protein; NME_0092                                                       N/A                 Neisseriameningitidisalpha153MKILALLIAATCALSACGGQAEEQPASAQPQEQAQSELKTMPVSYTDYQSVANKGLADQKTGLTLPEHVVPADNAEGKNLLHDFSDGLTLTVDTDKADKITAVRVVWNTDAVPQKAEKLSKAAAALIAATAPGDRTLLRDTGDQIKMAIDSHNAQKEPTREWARGGIAYKVTVTNLPSVVLTAKAE
complement(79560..79715)           PHAGE_Pseudo_MP42_NC_018274: c repressor; NME_0093; phage(gi399528580)               4.60e-07            Neisseriameningitidisalpha153MLWVKRIQRQIDGSLLLISDNSTYPPMPLALAEHPDIQIIGQVVQVSKDLN
80075..80335                       PHAGE_Burkho_phiE255_NC_009237: gp41; NME_0094; phage(gi134288829)                   1.00e-06            Neisseriameningitidisalpha153MMQLTSLEVGIRSQVSRLKDLFDQLNAHSEAHEISHQAKMVGTLNQIILDCEQLRESYALPTEAPTDNVPEWLGGETGEGDESGND
complement(80357..80668)           hypothetical protein predicted by Glimmer/Critica; NME_0095                          N/A                 Neisseriameningitidisalpha153MTSPVSPSIRAASIFPLARSISTACRTDINRLPLRLIASTKTAEINLASSGLSSVLPASLRRLRVGLMLTASSLRYSVARLMPNSCACCLRYAERAPRPIASA
80647..81219                       PROPHAGE_Escher_CFT073: putative prophage integrase; NME_0096; phage(gi26250313)     1.95e-17            Neisseriameningitidisalpha153MGKPGKSSRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVPLSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTPGKSKHTMHGFRHLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYRLQERRELAEWYSRRHRQAYEAAAQNTCNKT
81299..81502                       conserved hypothetical protein; NME_0097                                             N/A                 Neisseriameningitidisalpha153MNIIEQEMKHSSLRKVDVEIAKIIADAHKINAESVKIAQESRWYPMMAATGLVTAIAAVLALIFKFA
81575..82036                       PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; NME_0098; phage(gi971741518)     2.12e-08            Neisseriameningitidisalpha153MDYRARRRKPFHYPLPLSPPDCQNPQADRRRMPGRALPPFRKRHHPLRFYFFRRKTGRRSPICRRPYRNLPPGSQKNMRNKINRNDMELGYTPYNLRNRCKLIQAELAQIVGVKHYIQVGRWEAEPDTETRRADMPLEKWRQFLDWTEKTNAV
complement(82446..83330)           PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; NME_0099; phage(gi16129935)     6.12e-22            Neisseriameningitidisalpha153MSTFFQQTAQAMIAKHIDRFPLLKLDRVIDWQPIEQYLNRQKTRYLRDHRGRPAYPLLSMFKAVLLGQWHSLSDPELEHSLITRIDFNLFCRFDELSIPDYSTLCRYRNWLAQDDTLSELLELINRQLTEKGLKIEKASAAAVDATIIQTAGSKQRQAIEVDEEGQVSGQTTLSKDKNARWTKKNSLYKLGYKQHTRTDAEGYIEKLYITPTNAHECTHLSPLLEGLPEGTTVYADKGYDGAENRQHLEEHQLLDGIMRKACRNRPLSETQTKTQPVFVEDPLCGRTKLRYAAP
95557..95636                       attR                                                                                 N/A                 TGTTTTTCAGTTTAAGCCATGAATGTGATTAGGCTCCTTATGCAGATGGCGTTACCAATAACGGCTGCTGTACGGATTGT

#### region 2 ####
complement(112261..112716)         PHAGE_Paenib_Tripp_NC_028930: transposase; NME_0130; phage(gi971756982)              1.18e-13            Neisseriameningitidisalpha153MARTAITDNIWEQLQTTMKAHGCHQWKNDRTVMEAILWKLRTGAPWRDIPIELGSWKTAYNRFNRWSKKGLWQNFFLIYEKKLTKNGYSSTEVMYGVINMQVELGVVSIEQLDKAVAETRQKYTYVWTRMEIRSILKSLGVTCTTVKLQTT
complement(112970..113027)         hypothetical protein predicted by Glimmer/Critica; NME_0131                          N/A                 Neisseriameningitidisalpha153MKGIILAGGSGTRLYPSRA
complement(113090..114250)         PHAGE_Entero_phi92_NC_023693: Phi92_gp067; NME_0132; phage(gi726647000)              5.91e-123           Neisseriameningitidisalpha153MKLSGRLKFQTAFCLRFIVKFTLSFWRLIFIMKKILVTGGAGFIGSAVVRHIINDTQDAVVNVDKLTYAGNLESLESVANHPRYAFEQVDICDRAALDRVFAEHQPDAVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWHDMPPEKKAAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICTLLEELVPEKPAGVARYEDLITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDNKTWWQNVLNGSYRLERLGTGK
complement(114254..115270)         PHAGE_Stenot_vB_SmaS_DLP_5_NC_042082: hypothetical protein; NME_0133; phage(gi100085)     5.06e-40            Neisseriameningitidisalpha153MKVLVTGGTGFIGSHTAISLIKAGYDVVILDNLCNSSINILPRLKEITGKDITFYQGDIRDRALLQKIFAEHKIETVMHFAGLKAVGESNVLPMKYYDYNVSGSLILAEEMAKAGVFSIVFSSSATVYGDPARTPITEDMPVGGTTNPYGTSKYMVERILSDIQKSDSRWSVILLRYFNPVGAHESGLIGEYPNGIPNNLLPYICQVASGKLPYLSVFGDDYPTPDGTGVRDYIHVVDLADGHLKAMQAKAKESGVHIYNLGTGNGYSVLDMVKAFEAASGLDIPYQIKPRRDGDIAVCFADPAFTESQIGWKAQFGLSQMMEDSWRWVSNNPNGYDD
complement(115344..116291)         PHAGE_Pectob_PM2_NC_028940: hypothetical protein; NME_0134; phage(gi971758043)       3.07e-28            Neisseriameningitidisalpha153MKTNFLKLAVETLQLEANAIMEMSKRLDNEFEKAIEIILNTQGRVVVVGMGKSGIIGQKLAATMASTGTSAFFVHPGEAFHGDLGMIKPIDVALLISNSGETEEIIRILPFLKEQGNKIIAMTGNIKSTLAKHAHSLLDISVSREACSNNLAPTSSTTCTLAMGDALAMVLQSEKKFLPEDFARFHPGGSLGRRLLTRVSDVMKTKIPHCLPDASFKEIVYSINRGYMGLTLVMEHDTLHGIITDGDLRRAFDRFDNINQIKAKDIMSLSPKYVSADTRFAEAEAYMHAEKIDSLVVKESNKVIGVLNIYDIDHY
complement(116561..117607)         3-deoxy-manno-octulosonate cytidylyltransferase; NME_0135                            N/A                 Neisseriameningitidisalpha153MNTENLKTVIVVPARYASTRLPGKPLADICGKPMIQHVYERACKVPYIDDVIVAVDDRRVAEVVESFGGKVIMTSTQHDSGTDRLVEVMGKYAADIYINIQGDEPLIRSEDIALLAQGMKDEQISVGTLCHALPASEATNPNTVKVVLSANGNALYFSRSPIPYPRDKEHAYYFKHIGVYAYRKETLAKYSNLKQPDIELSEKLEQLRLLDAGIDIRVFEVPETGPGVDTPECLERVRAIMSGQLPIDKHSVNLADIRLVITDVDGVLTDGGIFYNENGECLKRFHVRDGLGIRLLEESGIKVAVLSGRDSPTLRKRIDDLGISYYQLGIKDKHAACIELMQEANCLK
complement(117607..118449)         2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); NME_0136               N/A                 Neisseriameningitidisalpha153MGLFKLGTRPSNSLPFTLFGGINVLEDLDSTLFACEKYVEVTEKLKIPYVFKASFDKANRSSIHSYRGVGLEEGMNIFSAVKDRFGVPVITDVHEPYQCNAVAEVVDILQLPAFLARQTDLVFAMAQTGRVINIKKPQFLSPEQMKNIVEKFKEAGNDQLILCERGANFGYDNLVVDMLGFGVMKKTCDDLPVIFDVTHALQKRDSGSSASGGRREQVLDLAMAGMATGLAGLFLEAHPNPDKARCDGPSALPLDKLEDFLLRVKAVDETVKSFPKLDIA
118502..118957                     PHAGE_Paenib_Tripp_NC_028930: transposase; NME_0137; phage(gi971756982)              1.18e-13            Neisseriameningitidisalpha153MARTAITDNIWEQLQTTMKAHGCHQWKNDRTVMEAILWKLRTGAPWRDIPIELGSWKTAYNRFNRWSKKGLWQNFFLIYEKKLTKNGYSSTEVMYGVINMQVELGVVSIEQLDKAVAETRQKYTYVWTRMEIRSILKSLGVTCTTVKLQTT
119250..119691                     putative virulence associated protein; NME_0138                                      N/A                 Neisseriameningitidisalpha153MRTRPSILKQKNPDLINKLVEDSVLTPHSNTSQTSLNNIFNKKLHVKIENKSHVAGQVLELTKMTLKDSLWEPRRHSDIHMLETSDNARIRLNTKDEKLTVHKAYQGGADFLFGYNVRESDEPALTLNKTLAENPAWVWNAAGNLKT

#### region 3 ####
complement(214505..215050)         PHAGE_Acinet_Presley_NC_023581: endolysin; NME_0245; phage(gi589891385)              2.34e-50            Neisseriameningitidisalpha153MGKTVTLTAGHSNTDPGAVNGSDREADLAQDMRNIVASILRNNYGLTVKTDGTGKGNMPLREAVKLIRGSDVAIEFHTNAAVSKAATGIEALSTVKNKRWCQVLSKAVAKKTGWKLRGEDGFKPDNAGQHSRLAYAQAGGIVFEPFFISNDTDLALFKTTKWGICRAIADAIAMELGAARV
complement(215358..215786)         PHAGE_Ralsto_RS138_NC_029107: DNA transposition protein; NME_0246; phage(gi985760931)     6.17e-22            Neisseriameningitidisalpha153MGFEKVEHLLPDTVLDIVDVIGLAATEQLVKAIGGARFKFGKGKVDTERLAILVEAIGEVKTHELLQVYGGEELYVPRCGKALIQLRNHRFYQEFVKLRDIDKESGLMAMTKLCPKYGISSRTGYTIINEMSRPAAQQAALF
complement(215767..215970)         PHAGE_Ralsto_RS138_NC_029107: hypothetical protein; NME_0247; phage(gi985760930)     1.67e-13            Neisseriameningitidisalpha153MLDKVEALLTVGGKHWNYAHAMARRMFGKDKVEYLDDTQLHKLVAALQIAENRKTEKAGGDDGVRKS
complement(216014..216202)         PHAGE_Pseudo_FHA0480_NC_041851: hypothetical protein; NME_0248; phage(gi100020)      2.95e-12            Neisseriameningitidisalpha153MRRALIAKIKIAQKELGLDDGTYRAVLERVTGKRSCADMDVSELESVVADMRSHGFKPKGKR
complement(216359..217315)         PROPHAGE_Escher_CFT073: transposase; NME_0249; phage(gi26248352)                     2.25e-05            Neisseriameningitidisalpha153MLIHYIDIAKRNFVIAVSSLSKTKTETNNPKGIAHTIEYLKKHKVALVVTESTGGLEIPAAKAIRRAGIAVIIANPRQTHQFAQSQPLTKTDAKDAKMPAFFAQMTAQKEDSQTMPYQPPTEAEEVLEALVNRRNQPADMRTAEKNRLHQVHETQVGSVKQLIAHFDRLIDELDKQIDNHTHTHFDGKDQVAEQIKGIGSITTATLMAMLPELGRLSHKRIAGLAGIAPHPREGGETKFKSRCFGGRSAVRKALYMATVAATRFEPLIRDFHQRPLSEGKPYKVAVTACMRKLLTISNARMRDYFAENDTAENGIRTA
complement(217480..217635)         hypothetical protein predicted by Glimmer/Critica; NME_0250                          N/A                 Neisseriameningitidisalpha153MESLYHSNKPPGRHPRPPKAHNRCVAQGAAGQPIDTTGQLPDNTTECKAGL
complement(217800..217922)         hypothetical protein predicted by Glimmer/Critica; NME_0251                          N/A                 Neisseriameningitidisalpha153MNKAMPSEGLSDGILRYFVKVGMTVRVFLTGWIFKVLYRV
complement(217928..219508)         PHAGE_Prochl_P_SSM2_NC_006883: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; NME_0252; phage(gi61806062)     6.18e-84            Neisseriameningitidisalpha153MPSIKRALISLSDKTGAVEFAQTLHKLGVEILSTGGTAKLLADAGVPVIEVADYTGFPEMLDGRVKTLHPKIHGGILGRRDLPEHVAKMEEHGIGNIDLVCVNLYPFAATIAKPNCTLEDAIENIDIGGPTMVRSAAKNWKHVAIVTDTADFPAIAAELEANNGALSDKTRFNLSRKAFSHTAQYDGMISNYLTSLSDEVLSGTPEIGEFPSQFNQSWIKVQDMRYGENPHQRAAFYRDIDPAAGSLSAYKQLQGKELSYNNIADADAAWEAVKSFDAPACVIVKHANPCGVAVAADTLTAYKLAYVTDTTSAFGGIIAFNREVDGETVKQITDNQFMEVLMAPKFTAEALEIAAAKKNVRVLEVPLEAGANRFELKRVGGGLLVQTPDIHRLNRADLKVVSKRQPTEQEWNDLMFVWNVAKYVKSNAIVFGKGGQTYGIGAGQMSRVDSTRIAARKAQDAGLDLNGACAASDAFFPFRDGVDVIAEQGIKAIIHPAGSMRDQEVFDAADEHGIAMVVTDVRHFRH

#### region 4 ####
1833763..1834413                   PHAGE_Bacill_G_NC_023719: gp245; NME_2075; phage(gi593777701)                        4.26e-10            Neisseriameningitidisalpha153MISVEHVSKQYQMRGGMRTVLDDINFSLKKGEKVGILGRNGAGKSTLIRLISGVEPPTSGEIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYVKAFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFAAKCKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP
1834477..1836750                   putative transcription accessory protein; NME_2076                                   N/A                 Neisseriameningitidisalpha153MNITQILSQELSATAAQITAAVELLDDGATVPFIARYRKEATGGLDDTQLRRLAERLQYLRELEERKAVVLKSIEEQGKLSDGLRAQIEAADNKTALEDLYLPYKPKRRTKAQIAREHGLQPLADVLLAEQSQDVEAAAQGYLNENVPDAKAALDGARAILMEQFAEDAELIGTLRDKLWNEAEIHAQVVGGKETEGEKFSDYFDHREPIRAMPSHRALAVLRGRNEGVLNIALKYQPDDTPITQQSEYEQIIARRFKVSDGHKWLRDTVRLTWRAKIFLSLELEALNRLKEAADTDAITVFARNLKDLLLAAPAGRLTTLGLDPGYRNGVKCAVVDDTGKLLDTVIVYLHQENNMLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVREMSKMGLHKIVVSEAGASIYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVNQSQLAKSLDAVVEDCVNAVGVDVNTASAPLLARISGLNQTLAQNIVAYRDENGAFDSRKKLLKVPRLGEKTFEQAAGFLRINGGKEPLDASAVHPEAYPVVAKMLAQQGISAAELIGNRERVKQIKASDFTDERFGLPTILDILSELEKPGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPREVVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKHKMPSENRSRERTAGRKPQRNDRAPANSAMADAFAKLKR
1836835..1837611                   PHAGE_Lactoc_lato_NC_004746: putative methylase; NME_2077; phage(gi30089875)         3.31e-24            Neisseriameningitidisalpha153MGFEQAGFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLTEQDLINCLNGQAVDLIIGGPPCQGFSMAGKIGRTFTDDPRNHLFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKILSAADFGVPQIRSRVIFIGRRDKGKISFPEPLQISHQTVGSAIGHFPKLAAGESNPHVANHEAMNHSAQMLEKMAFVKNGGNRNDIPEPLRPKTGDIRKYIRYNSNKTSRLYYRRYAQSFSL
1837589..1837783                   PHAGE_Halovi_HGTV_1_NC_021328: AdoMet-MTase; NME_2078; phage(gi509140530)            6.93e-11            Neisseriameningitidisalpha153MRKVFHYEQNRALTVRELAALQSFPDNFIFCGSKIAQQQQVGNAVPPLLAKAIAESILKMSENE
1837776..1838120                   hypothetical protein; NME_2079                                                       N/A                 Neisseriameningitidisalpha153MNKQYPKINYIGNKEKIASWICDQLPSDVDTVADVFSGGCSFAYEAKKRGYRVITNDILAINYQIALALIENNHETLNDDDGAMIFSGSPHAGFMSQRYAEKFYFHDEYQQLDL
1838178..1838819                   PHAGE_Stenot_vB_SmaS_DLP_5_NC_042082: hypothetical protein; NME_2080; phage(gi100085)     8.56e-17            Neisseriameningitidisalpha153MRRAMIRKMPYTEDMRPGDTANPYGASKAMVERMLTDIQKADPRWSVILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAAGKLPQLAVFGDDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRAFEAASGLTIPFEIKPRRAGDLACSFADPSHTKQQTGWETKRGLQQMMEDSWRWVSRNPNGYGD
1838820..1839902                   PHAGE_Entero_phi92_NC_023693: Phi92_gp067; NME_2081; phage(gi726647000)              2.09e-124           Neisseriameningitidisalpha153MQTANKKTILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICTLLEELVPEKPAGVARYEDLITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDNKTWWQNVLNGSYRLERLGTGK
1839965..1840831                   PHAGE_Entero_phi92_NC_023693: Phi92_gp066; NME_2082; phage(gi726646999)              9.48e-135           Neisseriameningitidisalpha153MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLAGIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGNDNVCLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFDANFRALSVEEKPQQPKSNWAVTGLYFYDNRAVEFAKRLKPSARGELEISDLNQMYLEDGSLSVQILGRGFAWLDTGTHESLHEAASFVQTVQNIQNLHIACLEEIAWRNGWLSDEKLEELARPMAKNQYGQYLLRLLKK
1840870..1841424                   PHAGE_Entero_phi92_NC_023693: Phi92_gp065; NME_2083; phage(gi726646998)              1.05e-63            Neisseriameningitidisalpha153MKDKKMNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTFVQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVFDVAIDMREGSPTFGKWAGATLSAQNQCQLWIPEGFAHGFYVLSDTTELTYKCTDYYKPEAEQVLIWNDPAIGIDWPLQGEPNLSPKDLAGKVLAEAVTF
