gi|00000000|ref|AP003367.1|  Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp DNA, 25107, gc%: 28.93%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
8748..8763                         attL                                                                                 N/A                 GGTTCTGTTGCAAAGT
8748..8763                         attL                                                                                 N/A                 GGTTCTGTTGCAAAGT
8748..8763                         attL                                                                                 N/A                 GGTTCTGTTGCAAAGT
complement(8808..9482)             PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; -; phage(gi985761246)     4.21e-162           StaphylococcusaureussubspaureusMu50MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAIAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEIRDMLAS
complement(9520..10194)            hypothetical protein; -                                                              N/A                 StaphylococcusaureussubspaureusMu50MRFTPRGILNNTDYELNSEFYYVPASDKQMNDQRDMTNKSIVGNLVYRNNFYNEVYTQPVYDLDDSNEKYQTPHIISIDDSEFDYNLTNLDDYFTKDTANKGYEKLVNAIKSEEITYFDSDINEVDDFTQQDEYSNDWYTNTFVDLVLSMKGYSYHVEPNRESVIEDSHIITENDITYNVSYNPEKHHLYINDFPAIPIEENDNIRLLNDNLTQDMEKTVLLQS
complement(10328..11107)           hypothetical protein; -                                                              N/A                 StaphylococcusaureussubspaureusMu50MEVVRLNQNLFNKLRGNEISSNKNGSRPYYYSFKRNNNRVCIPFRTNAQKVPNKYKINLGGEQPDKPNSAIDLTKSIVISNDEYLNNRSKAKIPQNVNNFLKQQAPAIEQKYDTMSNDYIKAKASLSKIPLVKYSTMQYFHKELNIQDSIDNQQTKNAINELISNGKSNKYNKLQSSLPNEKLNLLDDYETLYEFKSLTDYPAKINSNDIDNPFLEVEKNNKHFTLSALTIKNEPEKHVKDFLNYDIENEKNKDIDLDL
complement(11389..11946)           PHAGE_Entero_P1_NC_005856: Cin; -; phage(gi46401653)                                 9.96e-41            StaphylococcusaureussubspaureusMu50MANIGYARVSTRDQSLDLQIDALSNFGCEKIFSEKVSGRKVNRTELDKCLDYLREGDTLVIYKLDRLGRTTKQLIDLAQWLENNNIELQIIDMNINTKDPMGKMFFTMMSAFAELEANLLSERTKKGLESARARGNMGGRKAMPQEKKEYIKHLYDTKEYTGQEIAKKTNVSRDTVYRILREFKK
12241..12657                       PHAGE_Staphy_SPbeta_like_NC_029119: YolD-like protein; -; phage(gi985761198)         1.64e-27            StaphylococcusaureussubspaureusMu50MKIINPNMPEPYKYETDYRNIPREYLNPHIPKGRGIVKWNAFKTIPQQYEILEQHIEDQNKINMPLLSDDQLQEINEKVSSKISKNILTDLDYWKDGYIYSIQCYINKIDEFNGFMIITNSNSNNKLKIPLSSIVSVQ
complement(12699..13535)           truncated hypothetical protein; -                                                    N/A                 StaphylococcusaureussubspaureusMu50MKEFNNTGIYKYQQENAKKVIAESNQTTELGKFFIGKYSIKTDKTIEDSIHNGTLTGKIDIDLSNRGNNNKIYADEDFNQSWFKVKLNNDSLLEKNSYKLLIDDKDVDYNSKKTYGKYYNPTELSVYAIGKLEGKEFKTNRINIRRNYDNKPQNLKLSFKESQIRDYESKSKKVKEKAKSYIKEYTKELNKAYKKKDYKYISDYVKNNSQLEKQLKKQVKSKSKVKFKDVKINNVKRDKNKIYIELSKTNNGNVFQTKYTLDYDNVSNEFLVEDSHDN
complement(13522..13824)           truncated hypothetical protein; -                                                    N/A                 StaphylococcusaureussubspaureusMu50MMTTIVLLKSYLIKKKLYLKMMLKTLCYLLKVKKIKNNTMSKYKKLKVILNKNKDNNTVYGSITDQYGNNLITIKKNGKTFFFIDKLEFKPTYQRLCERI
complement(13670..13987)           truncated hypothetical protein; -                                                    N/A                 StaphylococcusaureussubspaureusMu50MNRGLIYGLHKSKKKIHNIWYVLAITLLIVGIAYYLISLNNAKGQVKEFEKLVQHNDYNSIAKKLSNKEETLSENDAKNFVLFVKSKENQEQYNEQIQKIKSNIE
complement(14037..14651)           hypothetical protein; -                                                              N/A                 StaphylococcusaureussubspaureusMu50MGNLDFDHEGYRKLLPLKDFKHFIKHSDSKTRNHFIGMAFNNKTDVFSRNFSNKMINIFPKNEFYIHIQQFPENDSPSYMVYNTDITAFIQFRLVGRSENKYLENIIRDYGVLIEVEALHSFKKGMGAMLVSQLEKLSDKLFIPIYLYDTNLKDELYYQDLGFFDTTKKGNHGEPLLVYKPKNLETNKKEKPIKSLFKKVFNIN
14723..14738                       attR                                                                                 N/A                 GGTTCTGTTGCAAAGT
complement(14781..15455)           PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; -; phage(gi985761246)     1.12e-162           StaphylococcusaureussubspaureusMu50MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPVLYQIWKKKHKKAYYKWRVDETYIKIKGQWCYLYRAIDADGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
15930..15945                       attR                                                                                 N/A                 GGTTCTGTTGCAAAGT
15986..16651                       PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; -; phage(gi985761246)     6.02e-129           StaphylococcusaureussubspaureusMu50MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPVLYQIWKKKHKKAYYKWRVDETYIKIKGQWCYLYRAIDADGHTLDIWLRKKRDHQSAYAFIKRLIKQFGKPQMIITDQAPSTKVAMAKIIKVFKLKPNCHCTSKYLNNFIEQDHRHIKVRKTRYQSVNTAKNTLKGIECIYGLYKKTVGLFRSTDFHHATKLVIC
16762..17094                       PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; -; phage(gi985761242)     5.32e-77            StaphylococcusaureussubspaureusMu50MFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
complement(17224..18663)           PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; -; phage(gi985761240)      0.0                 StaphylococcusaureussubspaureusMu50MNIVENEICIRTLIDDDFPLMLKWLTDERVLEFYGGRDKKYTLESLKKHYTEPWEDEVFRVIIEYNNVPIGYGQIYKMYDELYTDYHYPKTDEIVYGMDQFIGEPNYWSKGIGTRYIKLIFEFLKKERNANAVILDPHKNNPRAIRAYQKSGFRIIEDLPEHELHEGKKEDCYLMEYRYDDNATNVKAMKYLIEHYFDNFKVDSIEIIGSGYDSVAYLVNNEYIFKTKFSTNKKKGYAKEKAIYNFLNTNLETNVKIPNIEYSYISDELSILGYKEIKGTFLTPEIYSTMSEEEQNLLKRDIASFLRQMHGLDYTDISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTVFEGKKCLCHNDFSCNHLLLDGNNRLTGIIDFGDSGIIDEYCDFIYLLEDSEEEIGTNFGEDILRMYGNIDIEKAKEYQDIVEEYYPIETIVYGIKNIKQEFIENGRKEIYKRTYKD
complement(18664..19068)           PHAGE_Staphy_SPbeta_like_NC_029119: ribosomal-protein-alanine N-acetyltransferase; -; phage(gi985761241)     5.82e-94            StaphylococcusaureussubspaureusMu50MTEFMEEVLIDDNMVFDIDNLKGFLNDTSSFGFIAKENNKIIGFAYCYTLLRPDGKTMFYLHSIGMLPNYQDKGYGSKLLSFIKEYSKEIGCSEMFLITDKGNPRACHVYEKLGGKNDYKDEIVYVYDYEKGDK
complement(19113..19397)           PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; -; phage(gi985761242)     3.41e-65            StaphylococcusaureussubspaureusMu50MIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
19488..19503                       attR                                                                                 N/A                 GGTTCTGTTGCAAAGT
complement(19548..20222)           PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; -; phage(gi985761246)     4.21e-162           StaphylococcusaureussubspaureusMu50MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAIAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEIRDMLAS
complement(20260..20598)           PHAGE_Entero_P88_NC_026014: DNA invertase; -; phage(gi744692743)                     1.29e-24            StaphylococcusaureussubspaureusMu50MAKIGYARVSTQDQSLDGQIDTLEEYGCERIFSEKASGRKTKRTELDKCLDYLREGDILVVYKLDRLGRTTKQLIELSQWLDENSIDLHIIDMNVSTKDAMGKMFFTVLLQS
complement(20849..21415)           transcriptional regulator; -                                                         N/A                 StaphylococcusaureussubspaureusMu50MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKCKTNREKFYLYNELSLTTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWCINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIFLNGLSK
21593..23137                       PHAGE_Mycoba_Enkosi_NC_028936: transporter-like protein; -; phage(gi971757643)       2.54e-25            StaphylococcusaureussubspaureusMu50MISFFTKTTDMMTSKKRWTALVVLAVSLFVVTMDMTILIMALPELVRELEPSGTQQLWIVDIYSLVLAGFIIPLSAFADKWGRKKALLTGFALFGLVSLAIFFAESAEFVIAIRFLLGIAGALIMPTTLSMIRVIFENPKERATALAVWSIASSIGAVFGPIIGGALLEQFSWHSAFLINVPFAIIAVVAGLFLLPESKLSKEKSHSWDIPSTILSIAGMIGLVWSIKEFSKEGLADIIPWVVIVLAITMIVIFVKRNLSSSDPMLDVRLFKKRSFSAGTIAAFMTMFAMASVLLLASQWLQVVEELSPFKAGLYLLPMAIGDMVFAPIAPGLAARFGPKIVLPSGIGIAAIGMFIMYFFGHPLSYSTMALALILVGAGMASLAVASALIMLETPTSKAGNAAAVEESMYDLGNVFGVAVLGSLSSMLYRVFLDISSFSSKGIVGDLAHVAEESVVGAVEVAKATGIKQLANEAVTSFNDAFVATALVGGIIMIIISIVVYLLIPKSLDITKQK
