gi|183225820|ref|AP008937.1|  Lactobacillus fermentum IFO 3956 DNA, complete genome. 2098685, gc%: 51.47%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
539326..539340                     attL                                                                                 N/A                 ATTACTTGTTGTAGA
complement(539413..540534)         PHAGE_Lactob_Sha1_NC_019489: phage integrase; LAF_0460; phage(gi418489824)           1.25e-99            LactobacillusfermentumIFO3956MAQIIKKGPSYMVRVTWRDEDGKQHKKSKSGFKTKAAARKAGAEMESSKYHGVLSTADPIFTDYYQNWYETYKHHQSSRATQDFYRYCINVVNDYFGRRKISTIDRATYQRFLNDFGKSHSKNTASKMNAYVRVAVKNAVLDNVIPADFTEGTTIVWDKTRTRQVEYLNMEEINRLVALVKESLSPGFPVRYMILTAVYTGMRLSEIAALTWDDLDLPFKTIEISKSWDFKGRTFKDTKTKSSRRIIRVNQELLDCLVELKANGHDLVFARKDGSVCGSSSANRTLRLFLDKLNLDKPGFHFHSLRHSHVAYLLANGVPLYAISKRLGHSNMTTTANRYAYLIDEFKARSDDQIERALVSLGVPDGVPTSSFL
542998..543198                     PHAGE_Lactob_phiPYB5_NC_027982: hypothetical protein; LAF_0461; phage(gi937456193)     2.75e-29            LactobacillusfermentumIFO3956MNTDYYANGFKHAEDLLVKALADLDSIIRNEPETRGALRAEVRAILEQLDVAKDLIKQEAQERLGD
543201..543686                     PHAGE_Lactob_LfeSau_NC_029068: hypothetical protein; LAF_0462; phage(gi985757759)     4.77e-36            LactobacillusfermentumIFO3956MAGKLYELSDKYKELSEREDLDPEVLHDTLDAINDAIEDKADNIAAWIDDLTSAAKRKKAKAKEWNDSAKADLNKADSLKKYLIQELTYAGKKKMETDRFLLSTRNNAPSTVIDDETLIPDTFKNTKVTESVDKTAIKEAIKLGEDVPGAHLQASKSITIK
543711..544391                     PHAGE_Strept_Alq132_NC_013598: nucleoside triphosphate binding motifs protein; LAF_0463; phage(gi273809760)     9.53e-92            LactobacillusfermentumIFO3956MIIRSAKNTSRTANWRICIYGNPGVGKTTTVKYLTGKTLVLALDNSDKVLAGKDIDIADFNRTKPDEEITDFIVDMPNLSKQYDNIVIDNISSFERDWFIERGRATKSGINNELQDYSAWTNYFARVISAIYQYPVNILVTAWEKQVPITTANGQTFNQFAPNIRDNVRDMFMGLTDIVGRVVIKPEDGSRGVIMEGNDGVFAKNRLDSRKGCKVEDLFNFADSNV
544384..545730                     PHAGE_Lactob_A2_NC_004112: putative helicase; LAF_0464; phage(gi22296555)            0.0                 LactobacillusfermentumIFO3956MFKLFGYQQELVDKARQSLAKGNHSVLLVSPAGSGKSVIIAEITRLAIEKGGHVMFMVHRKELVDQIIDTFLKDDIDLSHTTVMTVGKIKRRLGKLPTPTLIITDETHHSLAKTYQDIYNWYDNVPRLGFSATPWRLSGKGLKNVYDDMVEGPSVQWLIDNSYLADYTMYGYKSGDDSQLKKSSTGDYTGRSMDDYAKTIIRGDVIKTWREKANERKTIVYCHAVWFSKQVAQVFNNAGIKAAHVDSKTPSGERSKIMVDFKAGKIMVLCNCDLISEGFNVPDCSCVVLLRPTESLVLYIQQSMRPMRFVPGKHAVIIDQVGNFKKFGTPDTPRTWTLEDRKKKKGNGGGQLGPPVRTCEKCFAVIPAQSRSCPICGAEIEVTKTELDIDRDANLDDVTQFKPFSANYVVTKRPSDLKTRQDLEEYAKAKGYKPGWIYYQLKKRGLAH
545750..546310                     PHAGE_Lactob_A2_NC_004112: putative single stranded binding protein; LAF_0465; phage(gi22296556)     1.97e-58            LactobacillusfermentumIFO3956MLFQTNYKDLQDHSYGPLPEGDYEFIIKSVAENATKSGAESIQFNLVVRNDLDQAMPETNGKYHNRQLWVDEWKRRATNQYEVNNLMYFMQAAGISEGTPINTMEDFFDIMTGKPVRIHITVEDNTYNGKTTQVNRPAPWDWQQTKFPQVNHQWKTNKPVTGAQMPTNGQTFTMPQQPAGNEKLPF
546376..548685                     PHAGE_Lactob_CL2_NC_028835: DNA primase; LAF_0466; phage(gi971748054)                0.0                 LactobacillusfermentumIFO3956MYESLPSELKKLSQWGCYHRIWKEERGKYTKIPVNPWTGGPGKSNDSSTWADFDTAMRALDQYPDADGLAFYFANGYVGLDIDHIAEDLERVQCGDTDPDNLVTKAHELTHGSYMEVSMSGEGIHCIFKGKIPGDRRRKGNYEMYQSGRFFALTGNTLNATPEIKSLDDTAMRRLYDHYLHSDKVAEFPKKQPAITENTLSIDEIINRAERSTNGARFRAFMKGGWEPFYPSQSEADMAFANDLAFWCGRDFKAMDSIFRQSSLYRKKYDEKHGKTTYGIALLNKAINETSNVFHPHQPLNVNYDMSFLNKDRDKPKTPRTWDDMGNALRFIDMYGDNFKYSYIDKMWYLYNGSYWQIDQSGMVEKCADSVIKNMDNEKLNIWPGMDESDATEKWVKFKAKCRSNRSKKSMLDEVKHHVPVLHSEFDNDLMLLNTESGYVDLNSGLLKEHDRDKMFSHQTAAEYTDTIDAPEWDKFLHQIFNNDEEVIHYIQKAVGYSATGSIKEQVMLLLYGNGRNGKSVFINTIADILGSYAETMNVESIMVKHSSGVNSDIARLEGARLVISSEANEGSRLDEGLVKQMTGGDKMVARHLYASEFEFTPQFKLWMATNHKPIIRGTDDGIWRRIMLIPFLVQIPKDKVDKELKYKLQREASGILNWIVQGAMMWQAEGLEPPEIIKKASDEYRQEMDAIEFFISEKCERGDGYMAPAGELYDVYKRWSDESGEHQFNKQKFGSEMKAKFNYKHTKHGRYYEGLKIITDSRINFLKG
548986..549330                     PHAGE_Lactob_LfeSau_NC_029068: DNA nuclease; LAF_0467; phage(gi985757765)            7.92e-54            LactobacillusfermentumIFO3956MAQPEHVIQNQIRLALSANQCTVFRINVGKLRLPDGTLFQTGVPRGYSDLSGFRWSDGKAFFIEVKTQTGRPRKDQIQFHHMLTSHGIVHGIARSPEDAIKIVKEGLIGYGFKQ
550838..551746                     hypothetical protein; LAF_0468                                                       N/A                 LactobacillusfermentumIFO3956MSEMTLNYISSYFYLSLVIITGLLYYMGEVKIMERKEKIKSIIEHPEYMMTAERRSLQKRIENKNLDSEEVKSVVTTTAKDKGKSLVSDLLNKKWFDLVCDIADTGDKLKNNLEYAKKVKLLGEYLQKTDNHEKALKSLVDLITDPYGLALYSKIINILSDSPADGDILEILSDYLKNLTQEESLQNVFSRNKTILTLIDKCSPQALILLRMYNKWTEVPSPQTVISNGGHVQGNNTRLVAQTFVEKKVIENVDVDDVQMAIYDLEKNGLAEFISETLNFAPVFAERTTKIGEMVKDAISNN
552537..552998                     PHAGE_Lactob_Sha1_NC_019489: P27 family phage terminase small subunit; LAF_0469; phage(gi418489801)     1.03e-28            LactobacillusfermentumIFO3956MVEKATEDLQPLQMSPPNYMKGTIAGRAWQRITPILRQSTIIKNADRSTVEALCSAIALYRIGFDDVQENGIQTPIYKSVQNNRGEIIDRDFIGFKKNPAVSTMDAAIRQIRSLSSELGLTPTSRASLLSLTTDSDDDDVPSLADVLSGGDGW
552995..554899                     PHAGE_Lactob_Sha1_NC_019489: phage terminase-like protein large subunit; LAF_0470; phage(gi418489802)     1.56e-160           LactobacillusfermentumIFO3956MMRKWDLTKKGQTVEKSYETEKNAGSYNEIFKKYRDPATRYAFAVLEGRQLAGKKIKLDAFRHLQDLRRQTEDPDFNYHYDLEKCRAIINYSKLVPDVNAGKPLPLMVWEQKILCSVIGWRDDNDQLRYMRAIFSVARTNGKTYLATILMSFYFLVESKGQMNHDYLYTAPVTVQSQKGFQYMQSFFTKLSTLPAFKKLFKQQEIVVLHDVIMSRKLHNRLLRMSYKSGQFDSLHCQFAVGDEVGDDHHIGSIIEGNGKITSGQGQEPNHCFLQVSTAYPDSNSQFYKDQQMMEEVMERDYDRSLDDNLCMVWEQDSLDETNQPETWVKSNPILDLNPENHDQLMKSLLSERDNKMANGSLPEFQNKSLNMWLQVKQNTYLDLDDINRAAVDDAPIDIDGRECYVGFDKSNFSDDTSIAFVFPYLDNDKPRYYVKQHSWVPLARAQNNVVLKEKQDGINYRDAEKRGFCDIAKNDYGYIDDGAVYDWLMAYVEAHKLKIKYFCYDKWGLSKMIGWIEQKTDWNTMPVKNVIQNLNEPTVDLRKQFDTGTIRYDHDPIITYSLKNAVLYGNNNGVKIDKEKATTKIDFVDALIDAWYTAMFHFDDISLEKFDAKNPFSGMSNDDINDYFTNDFSF
554914..555096                     hypothetical protein; LAF_0471                                                       N/A                 LactobacillusfermentumIFO3956MIKTIFKLILAVAVVVLWIAALYAFVKFGFAVNVAVGWLTLSVALYMGSRVISALIGGDD
555096..556316                     PHAGE_Lactob_Sha1_NC_019489: phage portal protein; LAF_0472; phage(gi418489804)      4.90e-51            LactobacillusfermentumIFO3956MFNPFKAVIKRSRMLISNGWSPFFSASNGQVVSVGPVNASAALNNSDVFAVVYRISSDVAACQFEAPMVDYMLNHPMGTLINGYNVWQSVVAQMALNGNAYMLIHREGTDGVVTRLEPIPEERVTVTLNDDGSDVFYTVHFDDSNRSGDYQVPSANMLHFRLFVNGQSESQYMGVSPLMSLAKEIDVQDQSNRLALSTLKHALAPTNILSIPQGTLSADAKANIRDEFEKANSGENAGRAIVLDQGLSLSQLTVSPDIAKLLANTNFSQAQIAKAFCVPADYLSGKQDEQSSIEQVRSLYQNSLTLYIRPIEDELTNKLGAPVHLDVSTAVDIDHQQLISNIVSLTNSKNPVLSGDDARQILVDRGVLPKQTYQTATPGNQDLGGDTSANDNGRTNADNGPDDTKQ
556765..558027                     PHAGE_Lactob_Lv_1_NC_011801: protease-scaffold-major head protein; LAF_0473; phage(gi219563201)     3.67e-115           LactobacillusfermentumIFO3956MKGENEVEIDYDKLADAVADKLEQRSAEQADVETTDETDKQDAETTEEPVEEPQEDEEEQSADDSADSDGKPAEKPAEKPAKKVEKPAEKVEKRSEPHAEIVTTENEELKEGTEMRELHGANESTKDQFAHFLKTGEITRDNTAGGIGLSNGQVLIPQDILPAEHEQHQFPRLGNLVRQIAVKHTTGKLPVFQPGSGKLALHTELQSTANSTSPEIKEILWNLKTYTGRYVFTRELMDDSDYNWEAELQSRLVELRDNTEDDLIVTQLTNGITAVKPTNLIDDLKLILDSKLKPYDSNASSIVLSQSAFAQLDQMKDSEGRPLVQPNVTLGTGNAILGKTVTVVDDTLFPSAQQGDVNIVVAPLQKAVIKFKSNEITGQFVDTNDIWYEALGIYMREDVVQANKDVINWVSSTTTSTPGK
558048..558350                     PHAGE_Lactoc_bIL309_NC_002668: Orf44; LAF_0474; phage(gi13095849)                    4.74e-06            LactobacillusfermentumIFO3956MIDTQSMLDELCLDATDETTQLITDLLSQSESIIRDSVDKTKPIASYEQDPIFIRAAKTLCTQLYYDRTLTGGMSIGLQMMISHLKGEVGADGYEPNSTV
558569..559120                     PHAGE_Strept_DT1_NC_002072: putative tail component protein; LAF_0475; phage(gi9632427)     4.73e-41            LactobacillusfermentumIFO3956MPCKSTARCTASWISQCGTTPICHTTWSPSSATERVVKMADIEMSQFLEQWLEDVKSISVDLTPKDQAEITKAGAKVMAERLTDVTNAKHRSHHNDKTYGHAADHISYMAKDVDGETNGLSTVGWDNHYHAMNMMRLNDGYRGHPGDHFVTNLQQDKATSEAVLRAESDKYQELINDKKGDDD
559503..560126                     PHAGE_Lactob_Sha1_NC_019489: major tail protein; LAF_0476; phage(gi418489811)        3.13e-14            LactobacillusfermentumIFO3956MLLHGIKDAWVFLKSADGKSLLVKTDGLSDNGLLELGHDVLGVASAEIKGLDGSKLEKISGNNTPQYSYADPLNPTVALTINSLKMMTYAKLVGLEKQGTGWQMADTKPVGGCVVKAPHMTDDGFTYFCFPSGNFLGGDKKLDSDSDSKKTPVTDTLNFAAIDDPNINDVYRIYDTGDPDWKDEDTMFKEILPDYNKTATAATGSQA
560193..560522                     PHAGE_Lactob_phiAT3_NC_005893: putative tail component; LAF_0477; phage(gi48697270)     1.10e-10            LactobacillusfermentumIFO3956MKLYIKLFNRRFDVSTSNGNVRRVYEMQLRIAKVQAEKDILKRAESELELIQELPKFLGTMLKLNKQQLKQLDNMDFEATQDAVGYICQRILGRTDDQIADEEKEDPKK
560727..564926                     PHAGE_Lactob_Sha1_NC_019489: minor tail protein; LAF_0478; phage(gi418489814)        7.52e-113           LactobacillusfermentumIFO3956MAKISNVMATKVALDLVDASKSVRNLTTEVNASTKAWQAQEASLRSAGDYAGATKARLDGLGSAIDAQKEKISALQEKQESMNNISQETAEEFLRLKERIEQLKAEQASLDDVTGRNKDKYESLGTEISRLEDQQNKLNTGTVKQAETYLRYGAQVDQAKAKLASMEAQQQRAEQQLELQNSGVLKLNASMRAQSALFMAHTERLQAEGRQYQAMGAQVDGLENKINQLRDIQQREMQMLESTRQRMGESSEEYLKQATRVEELGTQIAQTRSKINELNEAMKVTPHTWLDGMSARLDSLQGKADRVSHSFGSMFLANTAANLFSGALATIQAHFTELIARGQEYDVTQQKMVATWDTLTGSANKAQDMVNTVNNLSVKTGQAVDTVDELEQGFYHLHSSKSQADGLTRSMLNMADAVGLNSQQINDVSQDMVHAMATGKVTQGELNQIGAYFPMIDEALAKHYNTSVAGMRQIASAGKLDADTFQQVFEQLGNGKYKEAADNMMGTFFGMERTIKARMPALVGDIEQPFMQMSNPLLESVSKWVSDKRTDALFTQFGRHLMQAFNQITTAFGGKKINVSDALTGGMEAATRAVDRFANVVSSHHTQIKEFFDSFKTGSAASLKIFANVMLDLSKVMLPVLDELAKYPKTTAAVITSLLLASKAVKGLSVAVKGLQIMRTVGSTIGSFATKIKNIPSRKITRIQVDGAKSTRDLEAYSRRLDRIPNSKTTKAIVNTASAETSLTRLGTKATVAGKVGSSGLSLIGRGAKIASAGLDLIGGPAGAIMLVVQGLTILYQHNKKFRTFVNGLASSAMSAMGKMGKAFESGAKSAISWTSNMWDRVKKSYQQGQAQTQQQTLQHARQQQKAWNDIRSNVTNTAQDMMHKAGNAFSNGYNDVINNTSNWRNNASNLWHDASNKILNTAGNLRSNSTNILSNMHDKLSGIQDTGLGHMLGGWKDHFGKVINTIESNGSPLHNAFRDILNGLLSPFTNLINGIIKGINWVLDKVGGDSHKLGTFSIGKLANGTSGGGLLHDQVALLNDGSGPNYQEMVHFPSGETVMLPPERNLMMYLPAQTEVLDGERSAKLAPMMDINHYANGAVGDFFSGLWDKGKDVLDFAEDILKKPIDFMESVFNRFTSGKLDNGGFFSAQLHTSLPVFFAKSMANWVKKQFQEMANPAGSGVDRWRPYVVRALDMLHLSSSLVDKVLRQIQTESRGNPHAKQPGADPDGDGSGPALGLMQTKRKTFDAYKIPGHGDLWNGFDDLLAGLNYARHRYGDSLSALGQGHGYANGGVATQPSIFGEAGAEMAIPLNSMKSSRAWELMRQVVAYYGGNNASQTTTIDTRNMSRQIQELIEVGKAVLAVNGEQVRAIKGINGYDKARVYHQQRTDMDLANFQSFV
564989..565828                     PHAGE_Lister_vB_LmoS_188_NC_028871: holin-like putative tail component protein; LAF_0479; phage(gi971750814)     1.15e-24            LactobacillusfermentumIFO3956MQRPTMWIKLPGQAEINCESITKGLRFLQDDSDPGVTNSYLTDAGLDGSILSYQSIAKNTINANFWLHFGDWYDFKMKKHSIAKFFAQKGLMRIRTDAEPAIVKYVYAGSYSIKPVQDYSHEALFTVAFDNPTGIKYSLGWSDDEMTYGNGLWQVGMNLPNGKHLDYEYIGQRSFKIYNASDITVDPIQRHPMQIIVKNTTGQVEISNQTTGTSIAYRGHLTASDELTWDGVNCYLNGELANNDTDYTYLTLAPGYNDIHVSSTSDADIRFHFKFLYLD
565835..566875                     hypothetical protein; LAF_0480                                                       N/A                 LactobacillusfermentumIFO3956MTVTPLDAINQHRYTYFGFKDVSTADHPYQYLPALCYSDNLTNWNVVQYYPELGNCGAQSVAKIGSWYYVIATGYLMRTKNFVDFDKLDNPLDKQSEFKHVWAPEIFADINGNYHVAYCANKDDSEVTGFDLYVADMTADGQLSKLQQKITFYDGQLGNVRQIDPSIVLYKGIYYLATSGDYLYSATNYLGPYQRVKVNFTPTPQFYGDQWCGNDGWTEAPELVKDGNFLRLFSDMPAKHGYVYRSANLSDLGTWSARSQTVCVDFDMRHGCFMVNPNVEPALYKAEISYDNKFDPAMTIKALHNDQVVPLTCYERTGFQYQYANNQTNQIRSSSTLTMTARQAGR
566872..568434                     PHAGE_Lactob_LF1_NC_019486: phage-associated protein/endopeptidase; LAF_0481; phage(gi418489399)     3.15e-31            LactobacillusfermentumIFO3956MIQVESIITFNDDWFVVKNIQPTIQGSDIVQVTAIQYVNSQIATIHQYNTQQGTLTMRPDDILKYWLNDSTVNPNNKFTYNVVGSFESHRVENLGNGSGKDMLSKITELWPSAVIYPQKNQINVVSADAFTKPTQKRIDYIRDTSEIQMTQDSTNIVNMVRCIGATKQSDTSTAATDSGGVQLTESEATQTTGVDRTAEFQADAKKYLGVPYKWGGHDKSNPYAGMDCSGFVSQVYYDFGVNVPPQTAQMEPYFYQVSDPKCGDVGFYGPHGSTHHICLMLDANTMIYEPEPGEVCKIAPVSSYPPDWYARNNNIQAKINQQKTTTVDNANITFTDNYQSGTYNSEEQYYFEPFMVIDNDSINAWGPYPATSDLQDDRFTDADAMRTYAKTQLSPDPTISIVVTLNSNAKPIAGEQVRLNIQPRHYSTNVTVVGWTWYPFDPTQGTQITYDNLPATILNNRAAMRTLADVEKMARTALANIPQVFYSSEDPTAKHNVKNGAIWVKPINQETGGDAKHADG
575894..575908                     attR                                                                                 N/A                 ATTACTTGTTGTAGA
