gi|00000000|ref|AP009048.1|  Escherichia coli str. K-12 substr. W3110 DNA, complete genome. 4646332, gc%: 50.80%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
563978..564024                     attL                                                                                 N/A                 CTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATT
complement(564038..565201)         PHAGE_Shigel_Stx_NC_029120: integrase; -; phage(gi985761248)                         0.0                 EscherichiacolistrK12substrW3110MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKKA
complement(565321..565584)         PHAGE_Entero_YYZ_2008_NC_011356: putative exonuclease; -; phage(gi209427739)         1.38e-57            EscherichiacolistrK12substrW3110MKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVIERNEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
565674..565910                     PHAGE_Entero_SfI_NC_027339: replication protein P; -; phage(gi849250272)             1.22e-48            EscherichiacolistrK12substrW3110LVTNLYQNMRANALADAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV
566056..566364                     PROPHAGE_Escher_MG1655: IS3 transposase A; -; phage(gi226524700)                     6.08e-65            EscherichiacolistrK12substrW3110MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK
566361..567227                     PROPHAGE_Escher_MG1655: IS3 transposase B; -; phage(gi16128284)                      0.0                 EscherichiacolistrK12substrW3110MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA
567285..567470                     PHAGE_Entero_lambda_NC_001416: ren exclusion protein; -; phage(gi9626297)            8.13e-28            EscherichiacolistrK12substrW3110MARAGILVVDGKVWRTVYYRFATREEWEGKVSTNLIFKECRQSAAMKRVLRVYKRTSMGTQ
567538..567870                     PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; -; phage(gi311992758)     4.38e-10            EscherichiacolistrK12substrW3110MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRSTPH
568125..569651                     PHAGE_Burkho_Bcep176_NC_007497: gp53; -; phage(gi77864678)                           7.01e-37            EscherichiacolistrK12substrW3110MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEIYF
570116..570667                     predicted kinase inhibitor; -                                                        N/A                 EscherichiacolistrK12substrW3110MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
570677..571474                     predicted DNA-binding transcriptional regulator; -                                   N/A                 EscherichiacolistrK12substrW3110MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE
571689..572144                     PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; -; phage(gi401817579)          2.41e-79            EscherichiacolistrK12substrW3110MNLSQDGIKLHRGNFTAIGRQIQPYLEEGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKTFATPAWVKDALKHTYLGYETKDLVDVVTGDITTIQSLRHTSDLDTGEMYVFLCKVEAWAMNIGCHLTIPQSCEFQLLRDKQEA
572144..572314                     PHAGE_Escher_HK639_NC_016158: NinE; -; phage(gi356870663)                            4.54e-20            EscherichiacolistrK12substrW3110MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRSHG
572307..572597                     PHAGE_Entero_mEp237_NC_019704: hypothetical protein; -; phage(gi435439317)           2.06e-61            EscherichiacolistrK12substrW3110MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
572594..572956                     PHAGE_Salmon_118970_sal4_NC_030919: membrane-associated initiation of head vertex; -; phage(gi100034)     5.08e-38            EscherichiacolistrK12substrW3110MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE
572953..573093                     PHAGE_Entero_mEp237_NC_019704: hypothetical protein; -; phage(gi435439319)           2.69e-14            EscherichiacolistrK12substrW3110MMFEFNMAELLRHRWGRLRLYRFPGSVLTDYRILKNYAKTLTGAGV
573179..573562                     PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; -; phage(gi985761278)         3.75e-71            EscherichiacolistrK12substrW3110MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKAEGIIEGMLMALDIRLEMDIVVNNSN
complement(573960..574976)         PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; -; phage(gi971482498)     0.0                 EscherichiacolistrK12substrW3110MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH
complement(574981..576108)         -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110MNIYRAVTSFFNNSSKKGLTMKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYARLGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAFAGLKFGDYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTQRATGVATYRNNDFFGLVDGLNFAAQYQGKNDRSDFDNYTEGNGDGFGFSATYEYEGFGIGATYAKSDRTDTQVNAGKVLPEVFASGKNAEVWAAGLKYDANNIYLATTYSETQNMTVFADHFVANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKDLGVWGDQDLVKYVDVGATYYFNKNMSTFVDYKINLLDKNDFTKEGANKSLI
576621..576836                     PHAGE_Entero_VT2phi_272_NC_028656: holin; -; phage(gi966197762)                      5.28e-37            EscherichiacolistrK12substrW3110MKSMDKLTTGVAYGTSAGSAGYWFLQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKIKEDKRKAARGE
576836..577333                     PHAGE_Entero_SfI_NC_027339: lysozyme; -; phage(gi849250312)                          1.10e-117           EscherichiacolistrK12substrW3110MPPSLRKAVAAAIGGGAIAIASVLITGPSGNDGLEGVSYIPYKDIVGVWTVCHGHTGKDIMLGKTYTKAECKALLNKDLATVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ
577330..577791                     PHAGE_Entero_lambda_NC_001416: cell lysis protein; -; phage(gi9626310)               5.49e-105           EscherichiacolistrK12substrW3110MSRVTAIISALIICIIVSLSWAVNHYRDNAIAYKVQRDKNARELKLANAAITDMQMRQRDVAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR
577550..577732                     PHAGE_Entero_lambda_NC_001416: Rz1 protein; -; phage(gi160338810)                    1.47e-33            EscherichiacolistrK12substrW3110MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG
complement(577823..578116)         PHAGE_Escher_PA28_NC_041935: endonuclease II; -; phage(gi100065)                     6.91e-64            EscherichiacolistrK12substrW3110MKKMLLATALALLITGCAQQTFTVQNKQTAVAPKETITHHFFVSGIGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSK
complement(578407..578817)         PHAGE_Entero_lambda_NC_001416: putative envelope protein; -; phage(gi19263396)       9.72e-96            EscherichiacolistrK12substrW3110MAQVAIFKEIFDQVRKDLNCELFYSELKRHNVSHYIYYLATDNIHIVLENDNTVLIKGLKKVVNVKFSRNTHLIETSYDRLKSREITFQQYRENLAKAGVFRWITNIHEHKRYYYTFDNSLLFTESIQNTTQIFPR
579103..579309                     PHAGE_Entero_lambda_NC_001416: hypothetical protein; -; phage(gi19263397)            6.10e-43            EscherichiacolistrK12substrW3110MNKEQSADDPSVDLIRVKNMLNSTISMSYPDVVIACIEHKVSLEAFRAIEAALVKHDNNMKDYSLVVD
580057..580602                     PHAGE_Entero_lambda_NC_001416: DNA packaging protein; -; phage(gi9626244)            4.64e-128           EscherichiacolistrK12substrW3110MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWYAERDAEIENEKLRREVEELLQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELIPGLLSEYIEQSG
580757..581320                     PHAGE_Entero_lambda_NC_001416: Putative fiber assembly protein; -; phage(gi9626269)     1.73e-93            EscherichiacolistrK12substrW3110MNAMGSDYIREVNVVKSARVGYSKMLLGVYAYFIEHKQRNTLIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDAEAEKLFRIREAEETKNSLMQVASEHIAPLQDAVDLEIATEEETSLLEAWKKYRVLLNRVDTSTAPDIEWPTNPVRE
complement(581375..581959)         predicted SAM-dependent methyltransferase; -                                         N/A                 EscherichiacolistrK12substrW3110MGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMSYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
582098..582283                     PHAGE_Entero_lambda_NC_001416: Putative fiber assembly protein; -; phage(gi9626269)     8.15e-07            EscherichiacolistrK12substrW3110MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLEA
585280..585326                     attR                                                                                 N/A                 CTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATT

#### region 2 ####
1200217..1200230                   attL                                                                                 N/A                 ATTCATCTTATTTT
complement(1201256..1202383)       PHAGE_Entero_HK022_NC_002166: integrase; -; phage(gi9634144)                         7.90e-69            EscherichiacolistrK12substrW3110MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL
complement(1202364..1202609)       predicted excisionase; -                                                             N/A                 EscherichiacolistrK12substrW3110MLQMLTLEEWAAEKYRSNPPSVSTLRRYAKQNLFCPPAMKQGRLWRVREDAELVGELVTPVIKKNDSLLLQRILSNGSQTA
complement(1202646..1202957)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; -; phage(gi526244669)             6.44e-06            EscherichiacolistrK12substrW3110MVNAAQRTRVKVEADNRPSVDTHPPGVQPSPGTGGTRHHNFMLCVVLAVPVFSLVLSGTALFTKQRRVSPDDGLITRPILIAVATGALLCFVEKLTDRAGSIC
1203074..1203415                   hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MNQFYVHVRLFEDTAEQTKKFEELMLNFLYQKTVKESDDSCCRLIPEGYILKSTMNCQQILDQTFSIANSAGVDANIFVCKFEQSACLLPSASLVGNDFVHYDLTPKPIKLDS
complement(1203353..1203661)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; -; phage(gi401817573)          9.10e-15            EscherichiacolistrK12substrW3110MNEQNLKHVIALLLEDAKRLQQIEPNAGTEARILLAKQALKTCGAQAPGRTEFMNFMANTLTPLPCNGEKVSRVYHDTMVKALRIELDGLRRKIVMNEIVTN
complement(1203836..1204510)       PHAGE_Shigel_SfIV_NC_022749: repressor / cI; -; phage(gi557307563)                   2.29e-168           EscherichiacolistrK12substrW3110MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
1204601..1204801                   PHAGE_Shigel_SfIV_NC_022749: Cro; -; phage(gi557307564)                              3.92e-41            EscherichiacolistrK12substrW3110MKAYWDSLTKEQQGELAGKVGSTPGYLRLVFNGYKKASFVLAKKLEQYTSGAITKSDLRPDIYPKD
1204833..1205402                   PHAGE_Shigel_SfIV_NC_022749: DNA binding transcriptional regulator; -; phage(gi557307565)     5.15e-126           EscherichiacolistrK12substrW3110MRLIVGKHHWKIEKQPEWYVKAVRKTIAALPSGYAEAADWLDVTENALFNRLRADGDQIFPLGWAMVLQRAGGTHFIADAVAQSANGVFVSLPDVEDVDNADINQRLLEVIEQIGSYSKQIRSAIEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCISESNDARECAAPGVVASIASGCGETNA
1205399..1205737                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307566)             6.42e-77            EscherichiacolistrK12substrW3110MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
1205747..1207114                   PHAGE_Shigel_SfIV_NC_022749: large terminase subunit; -; phage(gi557307528)          0.0                 EscherichiacolistrK12substrW3110MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWASARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPVKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIESYGIRSL
1207126..1207308                   PHAGE_Shigel_SfII_NC_021857: putative integral membrane protein; -; phage(gi526244693)     1.59e-34            EscherichiacolistrK12substrW3110MIMLILAPLVGVLGALLLAYGAWLIYPPAGFVVAGALCLFWSWLVARYLDRTQSSVGGGK
1207308..1207781                   PHAGE_Shigel_SfIV_NC_022749: portal protein; -; phage(gi557307529)                   1.24e-94            EscherichiacolistrK12substrW3110MFFSGLFQRKSDAPVTTPAELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSLKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKAFGEVAELLPVDPGCVVYALGRCQRWPEGDRRECYSAR
1207837..1208499                   PHAGE_Shigel_SfIV_NC_022749: baseplate protein; -; phage(gi557307544)                3.25e-154           EscherichiacolistrK12substrW3110MPIACSSAGAVGNADDGTALILVTPVNGLPSSGVADTLTGGFDTEELETWRARVIERYYWTPQGGADGDYVVWAKEVPGITRAWTYRHLMGTGTVGVMIASSDLINPIPEESTETAARQHIGPLAPVAGSDLYVFRPVAHTVDFHIRVTPDTPEIRAAITAELRSFLLRDGYPQGELKVSRISEAISGANGEYSHQLLAPVDNISIAKNELAVLGTISWT
1208490..1209074                   PHAGE_Shigel_SfIV_NC_022749: tail protein; -; phage(gi557307545)                     2.34e-138           EscherichiacolistrK12substrW3110MDVTNDDYIRLLSALLPPGPVWSASDPAIAGAAPSLTRVHQRADALMRELDPRTTTELINRWERLCGLPDECIPAGTQTLRQRQQRLDAKVNLAGGINEDFYLAQLAALGRPDATITRYDKSTFTCSSACTDAVNAPEWRYYWQVNMPATTNSTWMTCGDPCDSALRIWGDTVVECVLNKLCPSHTYVIFKYPE
1209078..1209707                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307546)             1.10e-61            EscherichiacolistrK12substrW3110MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKSDGTVQTALENLGLGEGAKLNAATATLGRTGFIAIPVMIGGIEQSVIIQWGWNAAKASASGGDGNTVVFPVAFNNACVAVVANYDNVSAPINAVATGGYTTTSFLLRCAAQTGSYYYNWIAIGY
1209709..1210122                   PHAGE_Shigel_SfIV_NC_022749: tail fiber assembly protein; -; phage(gi557307547)      1.07e-12            EscherichiacolistrK12substrW3110MKIYCCLNTVGFFMDGCGVIPPDSKEITAEHWQSLLKSQAEGGVIDFSVFPPSIKEVIRTHDDEVADANFQKQMLISDATDFINSRQWQGKAALGRLKEDELKQYNLWLDYLEALELVDTSSAPDIEWPTPPAVQAR
complement(1210094..1210696)       PHAGE_Shigel_SfIV_NC_022749: tail fiber assembly protein; -; phage(gi557307548)      7.44e-112           EscherichiacolistrK12substrW3110MHKAILNSDLIATKAGDVTVYNYDGETREYISTSNEYLAVGVGIPACSCLDAPGTHKAGYAICRSADFNSWEYVPDHRGETVYSTKTGESKEIKAPGDYPENTTTIAPLSPYDKWDGEKWVTDTEAQHSAAVDAAEAQRQSLIDAAMASISLIQLKLQAGRKLTQAETTRLNAVLDYIDAVTATDTSTAPDVIWPELPEA
complement(1210696..1211232)       PHAGE_Escher_pro483_NC_028943: tail fiber protein; -; phage(gi971758534)             1.37e-63            EscherichiacolistrK12substrW3110MPFACYFFIFINVGLGEGSALPVGVPVPWPSATPPTGWLKCNGAAFSAEEYPELAKAYPTNKLPDLRGEFIRGWDDGRGIDTGRSILSIQGYATEDHAHGLPSRSTIVTDATINFYFDEIWVNSGTDIIKRGNTNDAGLPAPDYGTFKTYKQSVDGLGAAASETRPRNIAFNYIVRAA
1211262..1211816                   PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; -; phage(gi169936026)                  1.14e-116           EscherichiacolistrK12substrW3110MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLETARAQGRIGGRRPKLTPEQWAQAGRLIAAGTPRQKVAIIYDVGVSTLYKRFPAGDK
1211923..1212756                   PHAGE_Mycoba_Lamina13_NC_024143: HNH endonuclease; -; phage(gi640884809)             1.73e-05            EscherichiacolistrK12substrW3110MHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIALDYIIERLVDSGVSQVVVYLASSSVRKHMHSLDERKIHPGEYFTLIGNSPRDIRLKMCGYQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRGELSELSQPTDDESLLNMRVSKLIKKTLSQPEGSRKPVEVERLQKVYVRDPMVKAWILQQSKGICENCGKNAPFYLNDGNPYLEVHHVIPLSSGGADTTDNCVALCPNCHRELHYSKNAKELIEMLYVNINRLQK
1213002..1213154                   -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110MGWTEAADLIVKGMEGAINAKTVTYDFERLMEGAKLLKCSEFGEAIIENM
complement(1213257..1213580)       PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; -; phage(gi209447168)             1.36e-50            EscherichiacolistrK12substrW3110MKWIVIDTVIQPTCGISFSAIWGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNSCIIKICPYGLK
complement(1214280..1214684)       PHAGE_Entero_lambda_NC_001416: putative envelope protein; -; phage(gi19263396)       2.17e-34            EscherichiacolistrK12substrW3110MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALLHICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNTLLYIEDVENNKPLI
1218248..1218261                   attR                                                                                 N/A                 ATTCATCTTATTTT

#### region 3 ####
1413683..1413694                   attL                                                                                 N/A                 AAATGGGGCAAA
complement(1413714..1414949)       PROPHAGE_Escher_Sakai: putative integrase; -; phage(gi15832267)                      4.93e-113           EscherichiacolistrK12substrW3110MSKLPTGVEIRGRYIRIWFMFRGKRCRETLKGWEITNSNIKKAGNLRALIVHEINSGEFEYLRRFPQSSTGAKMVTTRVIKTFGELCDIWTKIKETELTTNTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLHGETLYLDNPRSNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS
complement(1414951..1415166)       PHAGE_Escher_phi191_NC_028660: hypothetical protein; -; phage(gi966198069)           5.82e-05            EscherichiacolistrK12substrW3110MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYNYPKINQFIKDS
complement(1415245..1415454)       hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MYKITATIEKEGGTPTNWTRYSKSKLTKSECEKMLSGKKEAGVSREQKVKLINFNCEKLQSSRIALYSN
complement(1415447..1415641)       restriction alleviation protein; -                                                   N/A                 EscherichiacolistrK12substrW3110MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNGGVHV
complement(1415698..1416507)       PHAGE_Salmon_epsilon15_NC_004775: RecT; -; phage(gi30387413)                         6.80e-107           EscherichiacolistrK12substrW3110MTKQPPIAKADLQKTQGNRAPAAVKNSDVISFINQPSMKEQLAAALPRHMTAERMIRIATTEIRKVPALGNCDTMSFVSAIVQCSQLGLEPGSALGHAYLLPFGNKNEKSGKKNVQLIIGYRGMIDLARRSGQIASLSARVVREGDEFSFEFGLDEKLIHRPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIELVRSLSKAGNNGPWVTHWEEMAKKTAIRRLFKYLPVSIEIQRAVSMDEKEPLTIDPADSSVLTGEYSVIDNSEE
                                   PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; -; phage(gi985761253)         1.44e-171           
complement(1419202..1419477)       hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MITNYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLDEGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
complement(1419552..1419722)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; -; phage(gi169257260)           9.86e-07            EscherichiacolistrK12substrW3110MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL
complement(1419722..1419943)       PHAGE_Shigel_Stx_NC_029120: Kil protein; -; phage(gi985761255)                       1.02e-43            EscherichiacolistrK12substrW3110MIAHHFGTDEIPRQCVTPGDYVLHEGRTYIASANNIKKRKLYIRNLTTKTFITDRMIKVFLGRDGLPVKAESW
1420385..1420873                   PHAGE_Entero_lambda_NC_001416: Superinfection exclusion protein B; -; phage(gi19263394)     2.21e-08            EscherichiacolistrK12substrW3110MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSFVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKKLERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR
complement(1420870..1421025)       PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; -; phage(gi472340166)          7.28e-13            EscherichiacolistrK12substrW3110MQKIDLGNNESLVCGVFPNQDGTFTAMTYTKSKTFKTETGARRWLEKHTVS
complement(1421036..1421170)       hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM
complement(1421479..1421955)       predicted DNA-binding transcriptional regulator; -                                   N/A                 EscherichiacolistrK12substrW3110MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWRFFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPDWVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT
1422079..1422375                   PHAGE_Aggreg_S1249_NC_013597: RNA polymerase sigma factor; -; phage(gi100049)        7.67e-19            EscherichiacolistrK12substrW3110MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT
1422398..1422820                   PHAGE_Entero_mEp237_NC_019704: CII protein; -; phage(gi435439306)                    7.32e-10            EscherichiacolistrK12substrW3110MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVIVH
1422833..1423690                   PHAGE_Salmon_SPN3UB_NC_019545: PrpO; -; phage(gi423262427)                           7.49e-25            EscherichiacolistrK12substrW3110MLFVLILSHRAASYGAIMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWADVEPSLQEFFCDNGEEWVHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVEVVFEHDVNTKATNKDTDKDLKTDPPLNPPRGNRGVKKFDPLDITLPNWISVSLWREWVEFRQALRKPIRTEQGANGAIRELEKFRQQGFSPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG
1423697..1424443                   PHAGE_Shigel_Stx_NC_029120: DNA replication protein; -; phage(gi985761263)           1.50e-147           EscherichiacolistrK12substrW3110MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK
1424466..1425026                   PHAGE_Shigel_Stx_NC_029120: hypothetical protein; -; phage(gi985761264)              7.57e-44            EscherichiacolistrK12substrW3110METVFDALKAMGKATSIELAARLDISREEVLNELWELKKAGFVDKSAYTWRVADNNVQQEQPAQAELPEEITTATVAKISECDLTATIEQRGPQTADELATLFGTTSRKVASTLAMAISKGRLIRVNQGGKFRYCIPGDNLPAEPKAASVSPLWLSASSSACHGVLIITVITPSPTKNSATKMPEN
1425059..1425358                   PHAGE_Entero_lambda_NC_001416: cell lysis protein; -; phage(gi9626310)               2.56e-60            EscherichiacolistrK12substrW3110MRQRDVAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSVREATTASGVDNAASPRLADTAERDYFTLRERLVMMQAQLEGAQQYITEQCLK
1425114..1425299                   PHAGE_Entero_lambda_NC_001416: Rz1 protein; -; phage(gi160338810)                    1.89e-31            EscherichiacolistrK12substrW3110MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSGNDW
1425496..1426953                   potassium transporter subunit; -                                                     N/A                 EscherichiacolistrK12substrW3110MNTSHVRVVTHMCGFLVWLYSLSMLPPMVVALFYKEKSLFVFFITFVIFFCIGGGAWYTTKKSGIQLRTRDGFIIIVMFWILFSVISAFPLWIDSELNLTFIDALFEGVSGITTTGATVIDDVSSLPRAYLYYRSQLNFIGGLGVIVLAVAVLPLLGIGGAKLYQSEMPGPFKDDKLTPRLADTSRTLWITYSLLGIACIVCYRLAGMPLFDAICHGISTVSLGGFSTHSESIGYFNNYLVELVAGSFSLLSAFNFTLWYIVISRKTIKPLIRDIELRFFLLIALGVIIVTSFQVWHIGMYDLHGSFIHSFFLASSMLTDNGLATQDYASWPTHTIVFLLLSSFFGGCIGSTCGGIKSLRFLILFKQSKHEINQLSHPRALLSVNVGGKIVTDRVMRSVWSFFFLYTLFTVFFILVLNGMGYDFLTSFATVAACINNMGLGFGATASSFGVLNDIAKCLMCIAMILGRLEIYPVIILFSGFFWRS
1427091..1427354                   PHAGE_Vibrio_X29_NC_024369: DNA modification methylase; -; phage(gi658311236)        1.70e-26            EscherichiacolistrK12substrW3110MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
1427335..1427694                   PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; -; phage(gi658307708)          6.33e-07            EscherichiacolistrK12substrW3110MSRSSDNDQYRSRNALIRRHIEKMDASLHVGTKEFDISKVSEVDSVDDLLIDNAARYLLKDWKGVGELVNGVEVALEYTAERGIALLKQNPELYWQILAEAASIAQGKEQQKQDTIKKP
1428168..1429196                   PHAGE_Escher_HK639_NC_016158: tail length tape measure protein; -; phage(gi356870615)     4.88e-25            EscherichiacolistrK12substrW3110MAEQTSRLAIIIDSTGAKNNADNLTSSLVKMTQAGETAANSAGKVTKATEDEKNALAKLKAAIDPVGAAIDTVGRRYSELKKFFDKGLIDKEEYEFLVRKLNETTEELSGVAQAQREAEKAGKLAAAQQEAQAQAFQRMLDKIDPLAAALRNLEQQHDELNAAFASGKINGSQFENYSRKIQETRRELTGEAQAEREAAKAHDEQVVALQRLIAQLDPVGTAFNRLVEQQKQLNEAKAKGMLSPEMYEELSGKLRAMRSELEVTQSQLSKTGMSAKQTAFAMRMLPAQMTDIVVGLSTGQSPFMVLMQQGGHSAMQETRIASLPVTAIPAGMKIPCVTAGSA
1429172..1430698                   PHAGE_Entero_BP_4795_NC_004813: outer membrane protein Lom precursor; -; phage(gi157166058)     2.39e-34            EscherichiacolistrK12substrW3110VRNRWFSVMVGPSVRVNEWFSAYAMAGMAYSRVSTFSGDYLRVTDNKGRCEAGHFFPSLADNFADLGRFFSRKHIESAYLGYFFHHFWRYFRFLLRSLPLTYHLVHPKQVGQGEHRQLVIVFQQPLVSGFHEAELPLDDAKRVLHPGTDAGFHVFDVDGRFVLARILLQGFYLAGTLGDQPVHIHLGQLLALWRSLVAGIGDKLLLSMKQITQLIEVMLVGRGGDQAVGQATLGIDTNVGLHAKVPLIAFLGLMHLRIALLLFVLGRAGCLNDGGIHQSALGHHDACFGQPAIDGLEQLTGQLMLLEQVAEIHDGGAIRQGAIQGSGKQAHGGDFVQGIFHGTVAQVVPMLHAVNTQHGLQRIGPSAIARLGIKRLDDSGHILPWQNLLHAGEENLFSGLTALSAEFTIGEGELMAHDVPLGCAPDEYDDLISGTCSHLPKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKF
1429172..1429327                   PHAGE_Entero_BP_4795_NC_004813: outer membrane protein Lom precursor; -; phage(gi157166058)     7.37e-27            EscherichiacolistrK12substrW3110VRNRWFSVMVGPSVRVNEWFSAYAMAGMAYSRVSTFSGDYLRVTDNKGRCE
complement(1429460..1430440)       PHAGE_Bacill_BMBtpLA_NC_028748: IS5 transposase and trans-activator; -; phage(gi971482498)     0.0                 EscherichiacolistrK12substrW3110MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVKTLKQNPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ
1430528..1430698                   PHAGE_Entero_BP_4795_NC_004813: outer membrane protein Lom precursor; -; phage(gi157166058)     1.45e-32            EscherichiacolistrK12substrW3110VLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKF
1430763..1434125                   PHAGE_Entero_lambda_NC_001416: Tail fiber; -; phage(gi9626268)                       4.78e-102           EscherichiacolistrK12substrW3110MAVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPDEAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYEDSQPGTLNDFLGAMTEDDARPEALRRFELMVEEVARNASAVAQNTAAAKKSASDASTSAREAATHAADAADSARAASTSAGQAASSAQSASSSAGTASTKATEASKSAAAAESSKSAAATSAGAAKTSETNASASLQSAATSASTATTKASEAATSARDAAASKEAAKSSETNASSSASSAASSATAAGNSAKAAKTSETNARSSETAAGQSASAAAGSKTAAASSASAASTSAGQASASATAAGKSAESAASSASTATTKAGEATEQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASSASASKDEATRQASAAKSSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAKRAEDIASAVALEDASTTKKGIVQLSSATNSTSETLAATPKAVKSAYDNAEKRLQKDQNGADIPDKGCFLNNINAVSKTDFADKRGMRYVRVNAPAGATSGKYYPVVVMRSAGSVSELASRVIITTATRTAGDPMNNCEFNGFVMPGGWTDRGRYAYGMFWQYQNNERAIHSIMMSNKGDDLRSVFYVDGAAFPVFAFIEDGLSISAPGADLVVNDTTYKFGATNPATECIAADVILDFKSGRGFYESHSLIVNDNLSCKKLFATDEIVARGGNQIRMIGGEYGALWRNDGAKTYLLLTNQGDVYGGWNTLRPFAIDNATGELVIGTKLSASLNGNALTATKLQTPRRVSGVEFDGSKDITLTAAHVAAFARRATDTYADADGGVPWNAESGAYNVTRSGDSYILVNFYTGVGSCRTLQMKAHYRNGGLFYRSSRDGYGFEEDWAEVYTSKNLPPESYPVGAPIPWPSDTVPSGYALMQGQAFDKSAYPKLAAAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTKTTSSFDYGTKSTNNTGAHTHSVSGSTNSAGAHTHSLANVNTASANSGAGSASTRLSVVHNQNYATSSAGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHGHTITVNAAGNAENTVKNIAFNYIVRLA
1434125..1434700                   PHAGE_Entero_lambda_NC_001416: Putative fiber assembly protein; -; phage(gi9626269)     4.86e-131           EscherichiacolistrK12substrW3110MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGNALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEEISLLEAWKKYRVLLNRVDTSTAQDIEWPALP
complement(1434798..1435388)       PHAGE_Entero_Mu_NC_000929: Gin; -; phage(gi9633542)                                  3.18e-29            EscherichiacolistrK12substrW3110MSRIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSERPGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGGIDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQVVFERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI
complement(1435705..1435971)       PHAGE_Salmon_118970_sal3_NC_031940: base plate hub; -; phage(gi100103)               2.06e-05            EscherichiacolistrK12substrW3110MKINNILRNIFMKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKTSWLDNKELLQTAISVLKDNQNLNGKM
1436526..1436537                   attR                                                                                 N/A                 AAATGGGGCAAA

#### region 4 ####
1621271..1621282                   attL                                                                                 N/A                 AAAAAAGAGGTA
1629231..1629977                   PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; -; phage(gi971760361)          8.52e-10            EscherichiacolistrK12substrW3110MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ
1630066..1630752                   predicted DNA-binding transcriptional regulator; -                                   N/A                 EscherichiacolistrK12substrW3110MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSDWFSEE
1630929..1631132                   PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; -; phage(gi410491512)     4.86e-18            EscherichiacolistrK12substrW3110MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLDLIRLGMN
complement(1631167..1632627)       predicted mannonate dehydrogenase; -                                                 N/A                 EscherichiacolistrK12substrW3110MGNNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTARVTETYLSLLAHGAKATVAKYSVK
complement(1632716..1633999)       PHAGE_Burkho_phi1026b_NC_005284: gp59; -; phage(gi38707949)                          7.81e-28            EscherichiacolistrK12substrW3110MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
1634753..1635019                   PHAGE_Salmon_118970_sal3_NC_031940: base plate hub; -; phage(gi100103)               1.35e-05            EscherichiacolistrK12substrW3110MKINNILRNIFMKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYIEGNIKKKSWLDNKELLQTAISVLKDNQNLNGKM
1635336..1635926                   PHAGE_Entero_Mu_NC_000929: Gin; -; phage(gi9633542)                                  2.32e-29            EscherichiacolistrK12substrW3110MSQIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSERPGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGGIDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQAVFERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI
complement(1636024..1636599)       PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; -; phage(gi16129505)     6.90e-139           EscherichiacolistrK12substrW3110MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTDIAPPDIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEEISLLEAWKKYRVLLNRVDTSTAQDIEWPALP
complement(1636599..1637561)       PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; -; phage(gi16129506)     0.0                 EscherichiacolistrK12substrW3110MNITALTDNTQGAAGLELYEVYNNGYPTAYGNIIHLKGMTAVGEGELLIGWSGTSGAHAPAFIRSRRDTTDANWSPWAQLYTSAHPPAEFYPVGAPIPWPSDTVPSGYALMQGQTFDKSAYPKLAVAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTETTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSGAFGGTNTSIFPNGYTAISNLSAGIMSTTSGSGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHGHTITVNAAGNAENTVKNIAFNYIVRLA
complement(1637512..1638081)       PHAGE_Entero_DE3_NC_042057: RecA-like recombination protein; -; phage(gi100035)      8.15e-125           EscherichiacolistrK12substrW3110MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIRWYAERDAEIENEKLRREVEELRQASETDLQPGTIEYERHRLTRAQADAQELKNARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMNKAAALDELIPGLLSEYNRADRQYAGGSRS
1638470..1638703                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; -; phage(gi157166037)          6.55e-27            EscherichiacolistrK12substrW3110MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKGSGNFSAWVIEACRRRLCSEKRVSSEANKEKSDITELLRKQVRPD
1638761..1639171                   PHAGE_Entero_lambda_NC_001416: putative envelope protein; -; phage(gi19263396)       1.04e-75            EscherichiacolistrK12substrW3110MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFRWVTNIHEQKRYYYTFDNSLLFTESIQKTTQILPR
complement(1639323..1639496)       hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MNIENLKTKAEADISEYITKKIIELKKKTGKEVTSIQFTAREKMTGLESYDVKINLI
complement(1639668..1639823)       hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MREYPNGEKTHLTVMAAGFPSLTGDHKVIYVAADRHVTSEEILEAAIRLLS
complement(1640169..1640381)       PHAGE_Lactoc_bIL312_NC_002671: Csp; -; phage(gi13095918)                             8.40e-20            EscherichiacolistrK12substrW3110MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPAAVHVVAL
complement(1640744..1641241)       PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; -; phage(gi16765210)          1.80e-62            EscherichiacolistrK12substrW3110MNQIFMVIFLVLSGFIVGNVWSDRGWQKKWAERDAAALSQEVNAQFAARIIEQGRTIARDEAVKDAQQKSAEISARAAYLSDSVNQLRAEAKKYAIRLDAAKHTADLAAAVRGKTTKTAEGMLTNMLGDIAAEAQLYAEIADERYIAGVTCQQIYESLRDKKHQM
complement(1641238..1641771)       PHAGE_Entero_mEp460_NC_019716: endolysin; -; phage(gi428782372)                      1.35e-121           EscherichiacolistrK12substrW3110MNTKIRYGLSAAVLALIGAGASAPQILDQFLDEKEGNHTMAYRDGSGIWTICRGATVVDGKTVFPNMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQVIRRDQESALTCWGIEQ
complement(1641768..1642079)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; -; phage(gi428782371)           5.21e-40            EscherichiacolistrK12substrW3110MTQDYELVVKGVRNFENKVTVTVALQDKERFDGEIFDLDVAMDRVEGAALEFYEAAARRSVRQVFLEVAEKLSEKVESYLQHQYSFKIENPANKHERPHHKYL
complement(1642084..1642299)       PHAGE_Entero_mEp460_NC_019716: porin; -; phage(gi428782370)                          1.63e-42            EscherichiacolistrK12substrW3110MKSMDKLTTGVAYGTSAGNAGFWALQLLDKVTPSQWAAIGVLGSLVFGLLTYLTNLYFKIKEDRRKAARGE
complement(1643053..1643268)       PHAGE_Lactoc_bIL312_NC_002671: Csp; -; phage(gi13095918)                             4.11e-20            EscherichiacolistrK12substrW3110MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKGPAAANVIITD
1643569..1643781                   cold shock protein; -                                                                N/A                 EscherichiacolistrK12substrW3110MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEEITTGLRVEFCRINGLRGPSAANVYLS
complement(1644203..1644955)       PHAGE_Entero_mEp460_NC_019716: late gene regulator; -; phage(gi428782366)            3.20e-177           EscherichiacolistrK12substrW3110MNLEALPKYYSPKSPKLSDDAPATGTGCLTITDVMAAQGMVQSKAPLGLALFLAKVGVQDPQFAIEGLLNYAMALDNPTLNKLSEEIRLQIIPYLVSFAFADYSRSAASKARCEHCSGTGFYNVLREVVKHYRRGESVIKEEWVKELCQHCHGKGEASTACRGCKGKGIVLDEKRTRFHGVPVYKICGRCNGNRFSRLPTTLARRHVQKLVPDLTDYQWYKGYADVIGKLVTKCWQEEAYAEAQLRKVTR
complement(1644969..1646018)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; -; phage(gi428782365)           1.31e-140           EscherichiacolistrK12substrW3110MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVLA
complement(1646365..1646616)       hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MMNIEELRKIFCEDGLYAVCVENGNLVSHYRIMCLRKNGAALINFVDARVTDGFILREGEFVTSLQALKEIGIKAGFSAFSGE
complement(1646833..1646988)       PHAGE_Entero_933W_NC_000924: host killer protein; -; phage(gi9632541)                1.17e-25            EscherichiacolistrK12substrW3110MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
1654566..1654577                   attR                                                                                 N/A                 AAAAAAGAGGTA

#### region 5 ####
complement(2169439..2169657)       PHAGE_Entero_fiAA91_ss_NC_022750: activator of late transcription; -; phage(gi557307609)     8.77e-49            EscherichiacolistrK12substrW3110MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYESVQRYIVKPGEVHVVRPHPLPSGQQIMWM
complement(2169739..2169957)       PHAGE_Entero_fiAA91_ss_NC_022750: putative phage control protein D; -; phage(gi557307608)     2.89e-40            EscherichiacolistrK12substrW3110ARVAEFSISLATGRADIYTETPVKVSGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEVRLSDVGYETEDNE
complement(2170126..2170443)       hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFKCGE
2170849..2171748                   conserved hypothetical protein; -                                                    N/A                 EscherichiacolistrK12substrW3110MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFNLDGEPLSGQNFHIEILPAALRCRLPPDCPLLR
complement(2171830..2173870)       -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110MTMNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLEQKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMTDPTHVIWTQAARFLFSNCSGLRPPHQLCRRHRLSHSILNTVARIISRLIKCSPWIHSTFSEKKLSTQALSQQPFALILPRRLCRFSCASAEQYWPPRSVTITFRGLLRRHSAICRASQASCAVMRGDIDQPITARDHRSMTTARYSQPSSVRKYVMSPAHFWFGPLAKSCSNRFSDTGRPCARLTGLNFREAFALSPRRRLAATVFTLKGPARSSSVRRGAPRCFDRVKAARTTLSQCWRNCRVLILVRRHHVYQPLRATRSTRHIALMLNSACFSIKTYFISGASRSMSRPFGGPALHPVLPAGVDVQSRTSPVHVQKTSADFAVYCASCRVVIHTGVHGLRQHRCVQQASGLHCEIQANAVYGVFYWLILFLSCESPLTESLLTPRVHYCWVRSDRYSRQRKYDNAYRRRINDRQKYHGDYQQSPGSVCPFRKRHYSGRLWWHGPPNALDAWFHCRAFITGYCRFNVCRCWYCGWYYDLRLFYRCDGHSRSDCRSRFIEIPSRFSGTTNRKNHYYYRCCVRGGTGIAEDAGKINYGVG
complement(2171830..2172276)       PHAGE_Escher_RCS47_NC_042128: DNA helicase; -; phage(gi100021)                       5.92e-08            EscherichiacolistrK12substrW3110MLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMHGSIAERSLQDINADLMFVGADGIDAVNGITTFNEGYSISGAMVTAANKVIAVLDSSKFNRRGFNQVLPIEKIDIIITDDAVSEVDKLALQKTRVKLITV
2172364..2172672                   PROPHAGE_Escher_MG1655: IS3 transposase A; -; phage(gi226524700)                     6.08e-65            EscherichiacolistrK12substrW3110MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK
2172669..2173535                   PROPHAGE_Escher_MG1655: IS3 transposase B; -; phage(gi16128284)                      0.0                 EscherichiacolistrK12substrW3110MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA
complement(2173532..2173870)       -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110MTMNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLEQKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMTDPTHVIWTQA
complement(2173970..2175010)       PHAGE_Prochl_P_TIM68_NC_028955: putative zinc-containing alcohol dehydrogenase superfamily protein; -; phage(gi971760362)     1.37e-12            EscherichiacolistrK12substrW3110MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP

#### region 6 ####
2470747..2471679                   PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; -; phage(gi966197797)       0.0                 EscherichiacolistrK12substrW3110MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKAEARQKAERAENIKKNYKNPA
2471755..2471829                   tRNA                                                                                 N/A                 GTCCTCTTAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAATTGCAGGTTCGATTCCTGCAGGGGACACCA
2471800..2471815                   attL                                                                                 N/A                 TTGCAGGTTCGATTCC
2471991..2473148                   PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; -; phage(gi16130281)     0.0                 EscherichiacolistrK12substrW3110MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE
2473301..2473663                   PHAGE_Shigel_SfIV_NC_022749: putative flippase; -; phage(gi557307553)                8.47e-74            EscherichiacolistrK12substrW3110MLKLFAKYTSIGVLNTLIHWVVFGVCIYVAHTNQALANFAGFVVAVSFSFFANAKFTFKASTTTMRYMLYVGFMGTLSATVGWAADRCALPPMITLVTFSAISLVCGFVYSKFIVFRDAK
2473660..2474580                   PHAGE_Shigel_SfIV_NC_022749: bactoprenol glucosyltransferase; -; phage(gi557307552)     0.0                 EscherichiacolistrK12substrW3110MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK
2474577..2475908                   PHAGE_Shigel_SfIV_NC_022749: serotype specific glucosyltransferase; -; phage(gi557307551)     2.45e-92            EscherichiacolistrK12substrW3110MNKAIKVSLYISFVLIICALSKNIMMLNTSDFGRAIKPLIEDIPAFTYDLPLLYKLKGHIDSIDSYEYISSYSYILYTYVLFISIFTEYLDARVLSLFLKVIYIYSLYAIFTSYIKTERYVTLFTFFILAFLMCSSSTLSMFASFYQEQIVIIFLPFLVYSLTCKNNKSMLLLFFSLLIISTAKNQFILTPLIVYSYYIFFDRHKLIIKSVICVVCLLASIFAISYSKGVVELNKYHATYFGSYLYMKNNGYKMPSYVDDKCVGLDAWGNKFDISFGATPTEVGTECFESHKDETFSNALFLLVSKPSTIFKLPFDDGVMSQYKENYFHVYKKLHVIYGESNILTTITNIKDNIFKNIRFISLLLFFIASIFIRNNKIKASLFVVSLFGISQFYVSFFGEGYRDLSKHLFGMYFSFDLCLYITVVFLIYKIIQRNQDNSDVKH
2476249..2476551                   PHAGE_Shigel_SfIV_NC_022749: tail fiber assembly protein; -; phage(gi557307548)      9.61e-57            EscherichiacolistrK12substrW3110MRPATIAPLTPYDKWDGEKWVTDTEAQHSVAVDAAEAQRQSLIDTAMASISLIQLKLQAGRKLMQAETSRLNTVLDYIDAVTATDTSTAPDVIWPELPEE
complement(2476523..2476963)       PHAGE_Shigel_SfIV_NC_022749: tail fiber assembly protein; -; phage(gi557307547)      9.55e-20            EscherichiacolistrK12substrW3110MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
complement(2476990..2477508)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307546)             1.54e-42            EscherichiacolistrK12substrW3110MLQEELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKLDGTVQKALENLGLGEAAKRNVGTGANQIPDMGSFMLSASVPGYQKLPSGLIIQWGPIDVPLTSQDTVTYFPIAFPNRCLRVFATQDYTPGSANVGYIACAGYNQDPVKFISRAGVPGIGASFFALGC
complement(2477558..2477833)       PHAGE_Entero_SfV_NC_003444: DNA adenine methylase; -; phage(gi19549028)              3.82e-61            EscherichiacolistrK12substrW3110MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYPW
complement(2477833..2478327)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307568)             1.88e-111           EscherichiacolistrK12substrW3110MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
complement(2478324..2478692)       PHAGE_Shigel_SfIV_NC_022749: replication protein; -; phage(gi557307567)              1.14e-87            EscherichiacolistrK12substrW3110MTCAQWLWKKIIALYEQAAECDGEVVRPKEPNWTAWANEIRLMCVQDGRTHKQICEMYSRVSRDPFWCRNVLSPSKLREKWDELSLRLSPSVSTYTEKREDPYFKASYDNVDYSQIPAGFRG
2478966..2479412                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307560)             3.55e-84            EscherichiacolistrK12substrW3110MRKCRCLKLRNVKLINIRRIAVMMRSSKMASERSTDVQAFIGELDGGVFETKIGAVLSEVASGVMNTKTKGKVSLNLEIEPFDENRLKIKHKLSYVRPTNRGKISEEDTTETPMYVNRGGRLTILQEDQGQLLTLAGEPDGKLRAAGH
2479478..2480302                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307559)             0.0                 EscherichiacolistrK12substrW3110MSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHDLEKFNLNRFRFRGALSTASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEPGHADNTATLKLKKTAPFSALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDAIQATKAAAAIRKITIEANQTADFEDNDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKERPFKLRLSIITGDRPVLVLRIIQLEAVQEDMANEFRDLLVEKFKDSKVETFIGTFTA
2480430..2480966                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307558)             4.07e-129           EscherichiacolistrK12substrW3110MSFIKTFSGKHFYYDKINKDDIVINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIREKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHAYGMFMERFNDLSELRKCA
2480957..2481319                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307557)             3.75e-82            EscherichiacolistrK12substrW3110MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLVRKFDALEAKCAALENKIIPVSAELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA
2481319..2481624                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; -; phage(gi557307556)             3.98e-67            EscherichiacolistrK12substrW3110MTTFTNKELIKEIKERISSLEVRDDIERRAYEIALVSLEVEPDEREAYELFMEKRFGDLVDRRRAKNGDNEYMAWDMTLGWIIWQQRAGIHFSTMSQQEVK
2481540..2481680                   PHAGE_Shigel_SfIV_NC_022749: excisionase; -; phage(gi557307555)                      2.24e-25            EscherichiacolistrK12substrW3110MGYDSRLDHLAATSWYPFFNNVTTRGEIIEPYSLTLDEACQFLKIS
2481721..2481736                   attR                                                                                 N/A                 TTGCAGGTTCGATTCC
2481756..2481956                   PHAGE_Entero_HK633_NC_019719: hypothetical protein; -; phage(gi428782548)            5.50e-44            EscherichiacolistrK12substrW3110MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRANG
complement(2482140..2483075)       PHAGE_Burkho_phi1026b_NC_005284: gp58; -; phage(gi38707948)                          4.74e-16            EscherichiacolistrK12substrW3110MEPLREIRNRLLNGWQLSKMHTFEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQLFVRSHRKVELTHEGKRVYWALKSSLDTLNQEILDIKNQELSGTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTVLTGNDNVNLQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSPEYAQRHALTNTVINLCHCTLLHDRQAWSNDSGTDEWHSWAQHYAVNLPTSSGIGFDRSDLAVIAAMNHIGVAMGRKRLVQKRLASGELVAPFGDMTVKCHQHYYITTLPGRQWPKIEAFIIWLREQVKTTS

#### region 7 ####
complement(3918366..3919217)       PROPHAGE_Escher_MG1655: IS150 transposase B; -; phage(gi16131429)                    0.0                 EscherichiacolistrK12substrW3110MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV
complement(3919214..3919735)       PROPHAGE_Escher_MG1655: IS150 transposase A; -; phage(gi16131428)                    2.32e-124           EscherichiacolistrK12substrW3110MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMYLKKLKALAHPTKK
3919815..3919967                   PHAGE_Escher_P13374_NC_018846: prophage host toxic membrane protein; -; phage(gi410491667)     1.57e-05            EscherichiacolistrK12substrW3110MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQESYELAAFLACKLKE
complement(3920154..3920366)       PHAGE_Lactoc_bIL312_NC_002671: Csp; -; phage(gi13095918)                             3.01e-24            EscherichiacolistrK12substrW3110MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL
complement(3920647..3920937)       PHAGE_Burkho_BcepC6B_NC_005887: putative prophage repressor protein; -; phage(gi48697234)     9.74e-06            EscherichiacolistrK12substrW3110MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKGTGLKIDDFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME
3921371..3922081                   conserved hypothetical protein; -                                                    N/A                 EscherichiacolistrK12substrW3110MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
complement(3922131..3923105)       2-keto-D-gluconate reductase; -                                                      N/A                 EscherichiacolistrK12substrW3110MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFAEAEGLLGSNENVNAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD
complement(3923209..3923868)       PHAGE_Bacill_G_NC_023719: gp249; -; phage(gi593777705)                               1.87e-09            EscherichiacolistrK12substrW3110MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL

#### region 8 ####
4495873..4495886                   attL                                                                                 N/A                 ATATTTTATTCTTT
4501430..4502620                   PROPHAGE_Shigel_301: putative P4-type integrase; -; phage(gi24114228)                0.0                 EscherichiacolistrK12substrW3110MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ
4502907..4503317                   PROPHAGE_Escher_CFT073: transposase insC; -; phage(gi26249447)                       1.16e-68            EscherichiacolistrK12substrW3110MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
4503275..4504180                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; -; phage(gi16132094)                   0.0                 EscherichiacolistrK12substrW3110MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
4504279..4504614                   hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MIRKNKWLRFQTVCRYIPLSLKNHNRLVIFVCQRIEWRYIFSTNTGHPLKNTCEMTGTDFSTDGLMRRYVTGGNNQWHTVASLHMTIMMNRIGTVADRQPKARKVKHGEMT
complement(4504357..4505471)       -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110VNRPVFPVYHFLVSAAILVFVVIFWRTHHRDHRNWLALRLFVLCSVNRWPLRMVKGTVVGTTDTLREMQRYEQLSSTGLTTGKSSREHRYMIRLLLSLVRVCAGIICQCMTIPYQPHRGIRHPVYLLTIIPRQPPVQCLPAGHFMTMSRTLIPATMWWRWQQKQDTAHGGYPIKENWGSMTHASLLLLLMRSMPLSSRKAASLPVKQMTNCCYRKQNVRWRIHPLRRFSCTWVLIQIRVTALTPSRIITWSSIPEKLPVTSPASVNWITFLASLMVSFAGTHVISPCFTFLALGCRSATVPILFIIMVMCREATVCHLLPPVTRLISPSVEKSVPVISQVFFSGPVFVLKIYRHSIRQTKITAA
complement(4504357..4504599)       -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110MLYFSGLGLSVSDSANPVHHYGHVQGGYSVPLIITASDITSHQPVSRKISARHFAGIFQWMTGICTENIPPFNPLTDEDN
complement(4504723..4505169)       -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110VRRDYMSVYDYPVPTTPWLNTAPGLFIDDYTSTASSTVSSLSRTLIYDYEQNPDSGNNVVALAAKAGYSTWWISNQGKLGEHDTRISVIASDAEHATFLKKGSFASRKTDDKLLLQETERALADTSSPKIIFLHMMGSHPNPCDSLNS
complement(4505112..4505471)       -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110VNRPVFPVYHFLVSAAILVFVVIFWRTHHRDHRNWLALRLFVLCSVNRWPLRMVKGTVVGTTDTLREMQRYEQLSSTGLTTGKSSREHRYMIRLLLSLVRVCAGIICQCMTIPYQPHRG
4505940..4506269                   hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MLPPGPLLVLPVGARVSRGGLSPTERSCISRHTQQYLRACYPSGRYGTKGLVVRWFTGGREPRGTDNEPSGNRSLEPHAWLTDVLTRLPEWPEERLAELLPLEGFTFFG
complement(4506783..4508111)       PROPHAGE_Escher_MG1655: IS4 transposase; -; phage(gi16132099)                        0.0                 EscherichiacolistrK12substrW3110MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMGDLYSHRWEIELGYREIKQTMQRSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA
4508738..4509955                   PHAGE_Burkho_phi1026b_NC_005284: gp59; -; phage(gi38707949)                          9.04e-06            EscherichiacolistrK12substrW3110MATAWYKQVNPPQRKALFSAWLGYVFDGFDFMMIFYILHIIKADLGITDIQATLIGTVAFIARPIGGGFFGAMADKYGRKPMMMWAIFIYSVGTGLSGIATNLYMLAVCRFIVGLGMSGEYACASTYAVESWPKNLQSKASAFLVSGFSVGNIIAAQIIPQFAEVYGWRNSFFIGLLPVLLVLWIRKSAPESQEWIEDKYKDKSTFLSVFRKPHLSISMIVFLVCFCLFGANWPINGLLPSYLADNGVNTVVISTLMTIAGLGTLTGTIFFGFVGDKIGVKKAFVVGLITSFIFLCPLFFISVKNSSLIGLCLFGLMFTNLGIAGLVPKFIYDYFPTKLRGLGTGLIYNLGATGGMAAPVLATYISGYYGLGVSLFIVTVAFSALLILLVGFDIPGKIYKLSVAK
4509967..4511085                   predicted oxidoreductase; -                                                          N/A                 EscherichiacolistrK12substrW3110MINYGVVGVGYFGAELARFMNMHDNAKITCVYDPENGENIARELQCINMSSLDALVSSKLVDCVIVATPNYLHKEPVIKAAKNKKHVFCEKPIALSYEDCVDMVKACKEAGVTFMAGHIMNFFNGVQYARKLIKEGVIGEILSCHTKRNGWENKQERLSWKKMKEQSGGHLYHHIHELDCVQHLLGEIPETVTMIGGNLAHSGPGFGNEDDMLFMTLEFPSGKLATLEWGSAFNWPEHYVIINGTKGSIKIDMQETAGSLRIGGQTKHFLVHETQEEDDDRRKGNMTSEMDGAIAYGHPGKKTPLWLASLIRKETLFLHNILCGAKPEEDYIDLLNGEAAMSAIATADAATLSRSQDRKVKISEIIKHTSVM
complement(4511306..4511536)       -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110VNCETKQRTQFECIYFSQYWAKGDFIAKRAPIGQWEPYSEESLLGIIVTSVCRIKVAMLKPEPPRDPHIPLMGDFN
4511541..4511789                   -; -                                                                                 N/A                 EscherichiacolistrK12substrW3110LLADELTIGPIRAVPMDITPKYVGIASGLMNAGSAVADIISPIAFGIIIDKTGNWSLPFYGSVALLVIGIFLTFFMRPDKSL
4511877..4512143                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; -; phage(gi24373865)                 8.42e-09            EscherichiacolistrK12substrW3110MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRKLRKKLQRIEMENEILKRLL
complement(4512146..4513297)       PROPHAGE_Escher_MG1655: IS30 transposase; -; phage(gi16132105)                       0.0                 EscherichiacolistrK12substrW3110MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDTGGIKPHERKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRGRRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQKTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIHERSRNIDNRRSLGHWEGDLVSGTKNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKSLTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQHELDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD
complement(4513254..4513622)       PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; -; phage(gi557307550)                      4.24e-07            EscherichiacolistrK12substrW3110MSRKTQRYSKKFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATVDSIGQRNSYVKTWGCGGFLNETNIYSRGKSLCF
4513638..4514234                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; -; phage(gi41057343)          1.58e-110           EscherichiacolistrK12substrW3110MPFYFRKECPLNSGYLRKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPVGVMFQAIKAVIIRAGSSGSYCGDTGSGRV
4514231..4514473                   PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; -; phage(gi557307549)                      6.90e-11            EscherichiacolistrK12substrW3110MSRRGNCWDNSPMERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNAEASFS
4514400..4514813                   hypothetical protein; -                                                              N/A                 EscherichiacolistrK12substrW3110MVGYHQTNQKTDTGKTLTRRPVLVDHNRLPEGSRGRLAVAVAGDHPAAVQVTMTLVNDTGFDPVFSGSIAESWRQQPCTPSYCCDWEAATMLRAFPLAKKGEGRARLPSLYASFGKLGETPTHEDIIDNNRSINWPV
complement(4515370..4516137)       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; -; phage(gi371496158)                4.40e-17            EscherichiacolistrK12substrW3110MTLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRNPWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVVLLDEPTTYLDINHQVDLMRLMGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMAQGTPEEVMTPGLLRTVFSVEAEIHPEPVSGRPMCLMR
4525099..4525112                   attR                                                                                 N/A                 ATATTTTATTCTTT
