gi|00000000|ref|AP012203.1|  Porphyromonas gingivalis TDC60 DNA, complete genome. 2339898, gc%: 48.34%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2027218..2027232                   attL                                                                                 N/A                 ATTTTGTAACAATCT
complement(2028511..2029809)       PHAGE_Cellul_phi46:3_NC_021792: site specific recombinase, tyrosine; PGTDC60_1948; phage(gi526177232)     1.59e-21            PorphyromonasgingivalisTDC60MNIKRNIIFALESRKKDGVPIVENVPIRMRVNFASQRIEFTTGYRIDVAKWDGDKQRVKNGCTNKLKQSASEINAALLGYYTELQEIFKRFEVAEIMPSPAEVKEAFNNRHGQNEKMELSNSDISNEPSNFYEAFDDFVRVCGRQNDWTHSTFEKFAAVKNHLKNFRSELSFDFFDEEGLTEYVQYLREVREMRNSTIGKQLSFLKWFLRWSFKQGMHSNNAYDTFKPKLKDTQKKIIFLTWEELNRLREFKIPPTKQALERVRDVFLFQCFTGLRYSDVFNLRRSDIKGDHIEVTTVKTSDSLIIELNDHSKAILEKYKDVEFENDKALPVITNQKMNDYLKELAELAEINEPVRQTYYKGNERIDEVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL
2030290..2031582                   PHAGE_Flavob_23T_NC_041859: protector from prophage-induced early lysis; PGTDC60_1949; phage(gi100001)     1.08e-12            PorphyromonasgingivalisTDC60MKSQFRSVFYLRSNYINKEGKTPVLIRIYLNKERLSLGSTGLAVNPIQWDSEKEKVKGHSVEALEVNRKIEEIRADILTIYKRLDVTVEDLTLERIKSEYFGTSDTLTSVMELFEKHNSDVRVQVGITKTVATLQKYENCKRRFEQFLKSKYRRTDLKFSELTPLIIHNFELFLLTVAKCRPNTSTKILKFLKTITLYGQKHGFLAHDPFANKRFYLENTDRGFLTDEEIKNLIHKEMASPRLDLVRDIFLFSCFTGLAYIDVANLTEDNIVELDGRKWIMTKRQKTNIATNILLLEIPGMILEKYRPVRKERKLLPVISNQKMNGYLKEIADLCGIKKHLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHSALEGYCESIARQKAGQSPYESQTLNPKAL
2031579..2032034                   conserved hypothetical protein; PGTDC60_1950                                         N/A                 PorphyromonasgingivalisTDC60MKQNNPKELSYFRLKLESYMRDHHPERLGETEFITARADMALTAYCDAVAQGFTHPEAESMASEVLYQGLHFSKYDTLVSVLENEFDKEQPAPLPQRLAPILLSNKAVQATFAKFGLTDEFALDKQYDRLYTELTGTMVLLIESNGLPIVK
complement(2032027..2032254)       hypothetical protein; PGTDC60_1951                                                   N/A                 PorphyromonasgingivalisTDC60MVGRKIRPHEDLIFVGMIVSKHREKALRWRFFALSAGLDLAGSKGNRHTFARPITASGTLREPYLQRNGLISFAI
2032472..2032714                   hypothetical protein; PGTDC60_1952                                                   N/A                 PorphyromonasgingivalisTDC60MSNSRTFESYLLPFSLIWNEPTPHLITAISPFFRPCNPLVFPLFSSLFLASPRSFFRCFRGLIFAHDRRGNGMYLNLFAE
2032745..2033014                   excisionase family DNA binding protein; PGTDC60_1953                                 N/A                 PorphyromonasgingivalisTDC60MKLIIIDRKAWEHLRSSFADFIHRTEQLIGNPPEAEQWMDNEAVCRRLGISKRTLQTYRDTGKIPFSMIGHKCYYRENDITEILNAKNE
2033035..2033340                   excisionase family DNA binding protein; PGTDC60_1954                                 N/A                 PorphyromonasgingivalisTDC60MTENEIMTQQDPQMQMFAQLMEGILKKLERYCASSRPMLGGEVYLTGEEVCKQLRLSTRTLQDYRDNGTIAYCKIGDKILYKQSDIQAMLERHYYPIPKKP
2033337..2033813                   hypothetical protein; PGTDC60_1955                                                   N/A                 PorphyromonasgingivalisTDC60MTNIDEKRSLRLKQALRDMGNYGVKLRKPEESPFYDQPVDYEAEKKRFEPVQVEEQEDMESNEEFAPTERAASAEEPPQRVGKIKDRKRLAEFQRKYLQPLRVSHRKAVYVSEETQSRLNYVVRKIGEQGASISGYVEQVLREHLDHYKEDVETWRKL
2033798..2033998                   hypothetical protein; PGTDC60_1956                                                   N/A                 PorphyromonasgingivalisTDC60MAETLNYCVHRTQASVELPHSMNAVTRQGLSISFLIQQGVSLYHKLPFVRQRPLPQMGIKSLRSRD
2034005..2034430                   conserved hypothetical protein; PGTDC60_1957                                         N/A                 PorphyromonasgingivalisTDC60MRKKKQNKSDGRSSICPQWDRWNIRIPNPEDQQKLIELYRKSGAKTKSDYLRGRLLNEPFKVIIEDTTAQPYLRELDNIVTLTRKIGVLYNEIVKTLSSYHTVATAQRMIRKLEVYSEALLKLQIQAIQLTMVFETKEATK
complement(2034420..2035223)       PHAGE_Erysip_SE_1_NC_029078: integrase; PGTDC60_1958; phage(gi985758872)             2.25e-21            PorphyromonasgingivalisTDC60MVESFKTALREGNMAENTISAYIYAVNDYFSKHKTLNKRNLLLYKANIIEQFKPKTVNLRIQALNKFLEHVGKPKLRLKSVKVQQRSYLENVISQADYIFFKKKLKQEENLMWYFVVRFLTATGARVSELIQIKVEHVRIGYFDIYSKGGKVRRLFIPRRLRDEAEKWFEATQQTTGYIFRNRFGERITTRGIAQQLKNYAERYGLNTNVVYPHSFRHRYAKNFLEVFNDIALLADLMGHESIETTRIYLRRTASEQQAIVDKVITW
2035156..2036586                   type I restriction-modification system; PGTDC60_1959                                 N/A                 PorphyromonasgingivalisTDC60MYAEMVFSAMLPSLRAVLNDSTIIVNFKFREYPLIYYGRIAFPNSYYEKFADGKVVCIDDEIPFEIPNGWEWCRMGAIGDWGAGATPAKGNPNYYGGNILWLRTGELNNDVVYDTGIKVTNKALKECSLRLNKIGDVMIAMYGATIGKVAIAGTKMTTNQACCACTPIGIFNWYLFYFLMGSQIDFVKKGEGGAQPNISREKLIAHIMPVPPLTEQHKIVGKIKETLPLVEKYTHSQTQQDKLNDSIKTLLRKSILQEAIQGHLVPQDADDELASVLLQRIKEEKQRLIKEGKLKKKDAIDSVIFKGDDNTYYEQKDGTAIQIESDYDFPNTWEVVRLSHICRLINGEKKEGQYVCLDARYLRGKSNGDHLNSGKFVNKGDNIILVDGDNSGEVFAVPHDGYMGSTFKQLWVSEAMHLPYVLYFIQFYKDLLRNSKKGVAIPHLNKEVFYSLLIGIPPYQEQIRIANAMGELYARL
complement(2036581..2038143)       type I restriction-modification system, subunit S; PGTDC60_1960                      N/A                 PorphyromonasgingivalisTDC60MTGKQLKNSILQWAIQGKLVPQDPNDEPASVLLEKIRAEKARLTKEGKIKKDKKESIIYRGEDNSYYEKFADGKVVCIDDEIPFEIPNGWEWCRICHLFLHASGKQQSSGNKGNGTPQRFITTSNLYWGRFVLDNVKVMNFTDEEIITCSATKGDLLVCEGGAGYGRSAIWDKDYDICLQNHVHRLRPYIDGICEYIYYFIYLLKESNQLTSVGTAMPGLSANRLKGLLLPLPPHKEQKCIIDKLTRAIPFIERYDDKEKTLSLLNVDLPIRLMKSILQEAIQGRLVLQDSNDEPASILLQHIKEEKQRLVKEGKLKKKDVIDSTIFRGDDNTYYEQIGSEIMDVSNEIPFDLPCSWQWVRFGQIVRMSIGKTPVRGDVRYWSNATKPWVSISDMVDYGHINNTKEKISNAAASLMGSISPVGSLLMSFKLTVGRTSILNIDAYHNEAIITIYPFIDDEFALRDYLFYTLPILSNMGDFKDAIKGKTLNSKSLNSLLIPLPPLKEQRRIINRLEELYAYL
complement(2038140..2038619)       PHAGE_Clostr_phiCD211_NC_029048: Death-on-curing family protein; PGTDC60_1961; phage(gi981220993)     1.06e-06            PorphyromonasgingivalisTDC60MNKEIHYISYGEALEVYRKMIDASDGGFAGVRDEGGILATLDFVQNDMYYPTFTEKLAYLVFKFCSGHYFNDGNKRIALTLGAYFLHKNDYPWEACTFMRQFEAIVYHIAASHIDQDLLLRITNAFMDRKDYSESLKIDIANAMSKGQLGVTEEKDQEQ
complement(2038612..2039628)       PHAGE_Clostr_c_st_NC_007581: hypothetical protein; PGTDC60_1962; phage(gi80159838)     1.17e-15            PorphyromonasgingivalisTDC60MKDLTVSNIERQNVLNNRFAINKIQEQLDITGMLFEGEYWLTKKMVAEFYGVDVSTIDRYLASNGDELKHNGYVLCKGKLLKEFKLQFAHLINEVSKTTQLGLFNFRAFLNMGMLLTESERAKTLRSMILDLVIATIHEKTGGGTKFINRRDINYIPAAITEENYRKNLTSVISQYVQGHQTYKYAQVTDLIYKAVFKENAKEYREILRLDNKDNVRHTLYAEVLLVISSFENGVGSAIQEQCKQNGKVKLSIEEVERIVGELAEHPMQKPYLNDARTKMASRDFSFRDAYHGNIAEYLKAVTPEEFERFIGDQSVDFDHILESNKDVLKRLKQAEDE
complement(2039640..2041148)       PHAGE_Acinet_Bphi_B1251_NC_019541: putative restriction-modification protein; PGTDC60_1963; phage(gi423261981)     6.00e-23            PorphyromonasgingivalisTDC60MALNNFVKSIRNIMRNDAGINGDAQRIEQIAWMLFLKIYDEKENDWEFNEDKYQSFIPEPCRWRSWAKDQGDGNALTADALLEFVNNTLFPTLKALEVTPDTPIRSTIVRTTFEGANQYMKDGVLLRQVINVIDALDLGDYNESHAFGEIYETILKEMQSAGSAGEFYTPRALTDFMAETIDPQIGEKMADFACGTGGFIASWLKALDKKVQTAQDKEAYAKSIYGIEKKQFPYMLCVTNMLLHDIEAPRILHDNSLSKDVLNYTDEDKFNVILMNPPYGGNEKNDIKQHFPSDLSSSETADLFMVLIMYRLAEDGRAAVILPDGFLFGTDNAKLAIKERLLREFNLHTIIRLPGSIFSPYTSIATNILFFNNEKAEGSEEGFCTKETWFYRLDMPEEYKHFSKTKPMRSEHCLPIIDWWKNRQEIVDAGNNDEKSRCFTAKQLLDTDCNLDQCKFPKEEEEILPPAELLADYYKKRAALDHEIDKTLSEIQKILGIEIKSL
complement(2041152..2043539)       PHAGE_Bacill_BCJA1c_NC_006557: DEAD box family helicase; PGTDC60_1964; phage(gi56694884)     7.92e-23            PorphyromonasgingivalisTDC60MDNMHKMSEEDIKLKFITPQILSKGWSFDDISMEKKVKLTDGKINLQGNFVVRSKAKFADYMLYYNKATPIAIVEAKDAKHTISHGLQQAKEYAKMMDIPFAYSSNGQGFQEYDFLTGKELSLTMEEFPTKEELYSRFIRDSHSGEGLSDDELKVIKQPFCIGQDIFPPRYYQRNAVNQTVRAVAQGKKRMLLVMATGTGKTYTAFQIVYRLLKAGLVKKVLYLADRNVLIDQSIEQDFKPLAKTIHKVNFQQDLNSGITAYEVYFALYQQLIGQGGRKQYEELFKSEFFDLVIVDECHRGSAKDDSNWREILDYFSSSIQLGMTATPKETSYQSSISYFGEPLYTYSLKEGIEDGFLAPFKVVNITTNIGDEWRPTKGQTDVYGNEIEDRIYNNTDYDYNIVIEDRIREVAQQITTYLKHTDRMSKTIVFCADEEHAERMRTALSNANADMCKKNPDYVVRITGSDAYGQSKLDYFISVSSKYPVIATTSKLLSTGVDCKMVKLIVLDQRINSMTEFKQIVGRGTRIREKEGKTHFSLMDFRNITRLFADPDWDGPVEVDLNYPPQPIPVPPPQPCLICGKTPCECPCPICGKNPCVCINPPKPPKPVIDKDGCEVRVLQQVVSIYDTKGKLLRTESITDYTKKNINETYSDLEDFILHWNKAEKKARITDLLRDRGINLEALKQEQGLGDVDDFDFICHIAFGKKPLTRKERAEQVKKRDVFNKYGEEARKVLEALLDKYAVDGISQLENPMVLKLDPFRQMGAPAHIAKLFGGREKYYSAVRELENFIYSIA
complement(2043609..2043812)       PHAGE_Riemer_RAP44_NC_019490: lambda repressor-like DNA-binding domain protein; PGTDC60_1965; phage(gi418489929)     6.18e-06            PorphyromonasgingivalisTDC60MKAINRIKAVLAEKQVSGKWLANEIGRTENTVSRWCSNKVQPSLENLLEIAEVLKVDIRELLRSTQE
complement(2044072..2047485)       PHAGE_Vibrio_VvAW1_NC_020488: DNA methylase; PGTDC60_1966; phage(gi460042889)        5.34e-95            PorphyromonasgingivalisTDC60MPKSLAGQLPKLYATEKSLVGDKIACARYFHPMSAYTAYLLEYDPKERVGFGLVTMGYGWELGYMSLDEMKEVKVMGLGIERDLHFTPKALHLVEELKEYIGERYTHTEEQVIVHRTDKAEAKALSGTYPAEEETDISPEDIRITKHRLTFDRDGIHAQTLDPVSGEAIGDRQPILPAPASEPAEKTSEAVEEQAPDGVPVMTLFRQYDTPNRPVRREIRTDVESPREMNGRAVYFDEEHHPVESVDLDVPSLFPTGAIETWNREVERFNEVERKPTSVKPRTQRPSSRKQQPTSGQPDLFSGLWDTPALTEQFRQPPAPPSFDTSPRPYLSVIGEHLRDGSIVRQGKQIGYLSQVSEGNPLFHPVDLPSAQIGRLALYIDLRDTYHRLYDYETTREIEDKETRSRLNTLYDRFVGAYGHLNARKNAELLRMDTGSSDIFFLERSRDGQYIKADIFDHPTAFSQTALRTAETPLEALSASLNKYGEVRLAYMASLLPEQEEDEIVAALEGRIYYHPIERGYQIADRFISGNVIEKAEEIEQWVLQHGENEAVKKSLSALKAAIPTPIPFADLDFNFGERWIPAGIYARFASELFETEVHIGYSAPADEYTVKAPTKNPKISHTYAVKGEFKTYDGINLMKHALHNTIPDISKSKTVLDKETGKEKQIKVRDGDAIQQTNTKIEEMREQFSAWLVRQPDTFKEKLADRYNRLFNCFVRPQYDGSHQTFPGLDVKALGFEDLYKSQKDAVWMLKINGGGICDHEVGAGKTMIMCTAAYEMKRLGLANKPMIIGLKANVYDIAATFSKAYPNARILYPGKNDFTVRNRARIFSDIRNNDWDCIILTHEQFGAIPQSLEIQEGIFQKELDSVEENLEVLRQQGREISGRMLKGLEIRKKNLEAKLTRIADDIAERKDDTIDFKRMGIDHLFVDESHKFKNLTFTTRHDRIAGLGNSEGSQRALNLLFAIRTIQERTGKDLGATFLSGTTISNSLTELYLLFKYLRPQALEKQGIGTFDAWAAVFARKSTDYEFSVTNEIIQKERFRTFIKVPELGAFYAEICDFRTAKDIGIDRPEKHEILHHIPPTPEQEAFIQKLMEFARTGNAELLGREKLSEREEKAKMLIATDYARKRFKISASFR
2053700..2053714                   attR                                                                                 N/A                 ATTTTGTAACAATCT
