gi|00000000|ref|AP012492.1|  Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 DNA, complete 2240130, gc%: 38.34%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1562513..1563073)       PHAGE_Roseob_2_NC_041958: hypothetical protein; HCBAA847_1641; phage(gi100020)       1.02e-12            HelicobactercinaediCCUG18818ATCCBAA847MKVMNASGRLIDPFDLQTEDFDPKVIAQTLSRVCRFWGQTKRFYSVAQHCLVMVRIFEGNKELQKWALIHEVFEGLTGMDVPTPIKKSTQMALYREAEEKCLLQAAEIFGLTPPMPEEIKIADKRLMVSEALVLMNSENYDWAQLAEPYGEEVVSWISEESMLQDMQYVEHRFLKEFERLFGNKMQ
complement(1563168..1563488)       PHAGE_Bacill_Mgbh1_NC_041879: hypothetical protein; HCBAA847_1642; phage(gi100010)     2.05e-15            HelicobactercinaediCCUG18818ATCCBAA847MKLINLTLHNLTIHNGEGESTTIAPSGIVARVAAEKENTGCIDGIPVFKTSFGEIQDLPEAQEGVIYVASLLVVQAAKRADVFSPGELLRDEAGQPVGCLGLASHC
complement(1563591..1563932)       hypothetical protein; HCBAA847_1643                                                  N/A                 HelicobactercinaediCCUG18818ATCCBAA847MEDYKYFCPECDEDFYSFEAVEAPLKKPRKIIATMGSLNFVEQSIWVQTPEELKKLLWENIESSKMDLDDSYEFANEAEVSVFVDECGDIERYLPLYSSRDGKEEFGVTIKYL
complement(1564056..1564226)       hypothetical protein; HCBAA847_1644                                                  N/A                 HelicobactercinaediCCUG18818ATCCBAA847MKIFKVTKTEYTNQEGYFPPDTKVFASQSEAEAYFKLQIENNLNAWILLGASIEEI
complement(1564331..1564696)       PHAGE_Lactob_Lj771_NC_010179: MazF-like protein; HCBAA847_1645; phage(gi163932202)     5.58e-05            HelicobactercinaediCCUG18818ATCCBAA847MMGLNKSIILQGEIWKCNFDPQVGSEIAKSRPAIVISSDKFASFSTKIVVPLTTWRDKFEGAPFMVRIEPNLENGLSNPSAANCLQVKSFDRLRFVRKLGTIDRETHLTISLILFSSIKPF
complement(1564680..1565009)       hypothetical protein; HCBAA847_1646                                                  N/A                 HelicobactercinaediCCUG18818ATCCBAA847MMMVHYHQNMVELTAEILKGVSMKMPLVVNSHNAKEESLQENYDSCKNELRQIMISKRGEKGEQDFNALMKRIENKEAWNEAYKILAQDEEWKKEEKWLGNVAVNDGIE
complement(1565158..1566117)       PHAGE_Salisa_1_NC_017983: hypothetical protein; HCBAA847_1647; phage(gi388570747)     6.07e-07            HelicobactercinaediCCUG18818ATCCBAA847MESTRENTASALMSLGYKISRSWHFAIRDERTPSAFINQNGHIHDFGSDWHGDFPSFLKEFRGFHNIGDAIREAQRLLQMEIPFDFADFDKSEQKKKEGFIDGKWLGQYRSNRKTHFEAYSKLLRALLPSVKSGERRREIALRYDIGYQSAGNFKGKPFPERLIMPIRDEAGRIVTLWKYNPTLAKHERLRYTRGRRRSAFNLSDLLKYREAPQEPIFIVEGEKDVLNAVAHGIRAITPGSATSLFNESQLSMLKDLRLMVVGDYDEAGKNFNAAIKKQLKAHAKVVSVLDWEKFLKSKGRANLLKKGFDLSDWLEKRN
complement(1566217..1566753)       hypothetical protein; HCBAA847_1648                                                  N/A                 HelicobactercinaediCCUG18818ATCCBAA847MTVIRIVEEKRKKISFGKVAFPPYQKKRACKVEIELGLRTMSDGTTRFSICGSIWNHKRTDIYSGGQNDETIKSLIKEGELSASPLLLEILELWDKYHLNYLRPGTPEQEEAVQQGFETGTIKRFQKESFYDQAVAYLKSVGLYEVQYNGKPYRYGSGWIHSSIPPKDLKRIKEIMEG
1567771..1568298                   PHAGE_Burkho_phiE202_NC_009234: gp9, Cpp15; HCBAA847_1649; phage(gi134288743)        1.03e-11            HelicobactercinaediCCUG18818ATCCBAA847MQENEKLYRTFFYSAEPLSLNDLLKNSSKNSHIYNAITKFRDENLQEYEKMEKLRGQILKLLHDISVSPYIALRLGELKMQGFTDRGKPNIVQKQVDMLMGLDISHVSYKRLVDKIIVFCKDTDIVPALKCARTNGIEVIVVDIAEGYKIGNKILKHSDCVREISLLEKFSDQGI
complement(1568398..1568964)       hypothetical protein; HCBAA847_1650                                                  N/A                 HelicobactercinaediCCUG18818ATCCBAA847MAQGFRLAFPTEFGSMPYIQEEYDPEMDQPQPQADPKSLAELKSALEPLGVKLEMKGGSTAKASGAVFNNSTALKSLGFVFDKAQGAWLHNNVSDDIVEAVVEESTRNNFDTFDKLEGYINTCGFKISEVKESANGIYFAKLEVVPEMQADAGKLPEGAIQKGDFHVLNVDTLYRAHIGNSQAAESLF
complement(1568930..1569400)       PHAGE_Strept_phiARI0004_NC_031920: DNA polymerase; HCBAA847_1651; phage(gi100036)     2.00e-10            HelicobactercinaediCCUG18818ATCCBAA847MSNQIQIAQNQGQVIASNEAAKAKAIEYLSSMGLNLPQGQKEQFLELCQLLNLNPFLREIYAVGYKDKFNIIIGYNAYLKRAEMTGLLGYWNHWTEGTGENMKAVIEIHRKDFTGPFRHEVYLAEYKQDTQIWRSKPITMIKKSGCGTRLSPCVPN

#### region 2 ####
1835668..1837464                   PHAGE_Entero_JenK1_NC_029021: glutamine amidotransferases class-II (GATase) / queuosine biosynthesis QueC ATPase; HCBAA847_1949; phage(gi971766407)     4.44e-09            HelicobactercinaediCCUG18818ATCCBAA847MCGIVGYIGRDEKKQILLNGLKELEYRGYDSAGIAVLSLDELQTFKTVGKLENLESKCRDFSFQGFGVSIGHTRWATHGKPTEANAHPHIADFSNVVHNGIIENYQELKTMLESKGHSFISQTDTEVIVHLFEEKLKNTQDCYTAFTSTIAELKGAFAILLITKLAPDSIFYAKNGSPLIIGKSASQEDEIYFASSDAPLIGFVDSVVYLNDGDMGVMKLGSFSQLKNPKKLDSSKGYAQKEGFRYFMEKEIYEQHKVLLETMMGRVSEGDITLSEIESGFFDDIQSISICACGTSYHAGLSAKYLFERLAKIKTNVLIASEFRYAKPVMDKNELFIVISQSGETADTLEALKLAKKNGLKSLAICNVDNSSIVRESSVSLLTRAGIEKGVASTKAFATQMMLLWILSVYVGKLRGHIKQDELKTHIAQMVESAKATKVDSAMHEHIKRLSKRYLHGHGFFFIGRDIFYPLALEGALKLKEISYLHAEGYPSGEMKHGPIALADAELFTLALMPKHLLFDKIKSNVEELSARDATICAVSTEQIQGVDDMLLVQPCQSYMEEFFSMMVVLQIFALEVAIRLGNDVDMPRNLAKSVTVE
complement(1837468..1837941)       conserved hypothetical protein; HCBAA847_1950                                        N/A                 HelicobactercinaediCCUG18818ATCCBAA847MSALMLLGLGLGCIVAEIFFGSFFLLFIGLGLCITAGIEAFVGFGNIIGGSVESVYAWQAVSICAFAFLTLILLRKPIKSWFKGSKVYEDSLQNGGGVGEIQQGMVYFKGTLWAYEKALTLDSNGLESGTLESNTPLKEGDRVQVLEIRDNKAIIKA
complement(1838046..1838948)       PHAGE_Escher_BF23_NC_042564: hypothetical protein; HCBAA847_1951; phage(gi100059)     2.93e-05            HelicobactercinaediCCUG18818ATCCBAA847MLIFTGVVLVLCVAVLAFGIKIISQTDIAIVERLGRFHRVLDGGFHFIIPIIDRLSAVVSAREQMIDIGRQQVITKDNVNINIDGIVFLKVFDAKSAVYSVNDYKQAIANLATTTLRGEIGRINLDDSLSSRDRLNAALQVALGDAANNWGVKIMRVEISEISVPKDIENAMNLQMKAEREKRAIELKAQAEKEALIRNAEALKQEKVLQAEAIERMADAKKYEQIALAQGQSDAMELIANQMSKNAQAAEFLLTKERIVAFTELSKNPSKDKVIIPYETSEFIGGLSVIGEFLGKGKKA
complement(1839152..1840393)       conserved hypothetical protein; HCBAA847_1952                                        N/A                 HelicobactercinaediCCUG18818ATCCBAA847MDKVLQEILQIDSSRECIKFLVKRVQSDNYRGLQISQHNRYTQKEILVILQEIYELCGDTLLQIRTSDLSKRPYNIEGEEKYAELTTKISSKLGRCTQDSLRKNIFVDLHRMGLIDRFNAKKKQLNPFDNGTKKYIALTDFGIEFLQSTDIFTHNLLFTRALENLMQGFGEEILHIILELKSNSLTLYEVLFFVTFLYQKLDSKTYNRSDIISLIRDYRTLSKFQKQALLEKVKDYCEPKNFSGDKTQKRDFHNFLNETQQILSLLTQMAYFEYNKNDSKLYIRTGTYGIYEDNTKLKRSIKEKDLYFEKHNITKEKGFELHHIVPLCLAASRAEFQIIDKWENMVYIDAFSHAKITQNNNANMRLSFENNNANFSDFNDCVVHCENNINIKYDTEKQELMLDYNKRILDSKV
complement(1840393..1841157)       PHAGE_Pseudo_H105/1_NC_015293: adenine-specific DNA methyltransferase; HCBAA847_1953; phage(gi327198531)     2.93e-22            HelicobactercinaediCCUG18818ATCCBAA847MLNKIYIQDCFSFLESLADSSIDLAIIDPPYNLKIASWDSFKSEKEFLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEKAVFQNFITWYKKDGLSYTKKRFVNNQESILFYTMDSKSYCFNPESIRVPYESTSRIEHAKKNGILKNGKRWYPNENGKLCPDVWEIASQRHKQKVNGKTQKLHHPTIKPKEMIERMIKASSKKGDLVLDLFSGSGMTSLVARDLERNFIGCEASIEYVDSSLNIKEC
complement(1841147..1841779)       PHAGE_Sulfol_YNP1_NC_029027: putative type II restriction modification system, methylation subunit; HCBAA847_1954; phage(gi971767019)     4.21e-22            HelicobactercinaediCCUG18818ATCCBAA847MLKPNGKLCINVPLMPIFKRDLNTHYNRHIFDLQSDIQHSILESTPLFLLDLYIWNRTNTTKKLMFGSYPYPRTFYAQNTSEFITIYVKDGKPQNTPQELKEQSKLSQKEWVQFTKQIWDIPIPNKADSAFGKHAAIMPEIIPYRLIKLYSFIGDIVLDPFAGSGTTLKVAKELGRNFIGYEIYPHYKSVIEEKLGESGLFAMQGQGNAQ
complement(1841845..1842006)       PHAGE_Sulfol_STSV1_NC_006268: Cytosine methylase, similar to N4-cytosine methylase; HCBAA847_1955; phage(gi51980192)     3.87e-05            HelicobactercinaediCCUG18818ATCCBAA847MNKIFYKSSQNMCEVSECSVDLIITSPPYFNIKDYSKDGYQNVKHSAVAGGGI
complement(1842177..1843904)       hypothetical protein; HCBAA847_1956                                                  N/A                 HelicobactercinaediCCUG18818ATCCBAA847MEIRVYAECLEQGLDFKEYLHNINSSFNIKNIYPTKARGNITTKDSILQKITKLKDFDVIITIVSHNQETPILLVEYSTAVPTDDHKMQRSDVYFYSSLFKIPVLKISPHSKGLSNNHGGGDKITLIREQNLTLKINALVYFIEWESENDLLLTNPKRNSCIRYNTKIENILKNILSKHLNSTALNFYDELLSENMQYFDEKHLAELKASFSNSTRFQKENEKLIVKINRFGHAMDPDRGILFFVNALFEGENIITKIIIKRERQSGKESYDSLFDGLSTPIQDKLQKLIKQDFNADIALEVFKTATNINVLCKKKNSNHFEIEDNDLKDFLENYNSITYKSIFINSSCLRLCDTYSNIICELSWNANVAKEYLLSLKGGINNATTLYPLTMQNAKEDIITFASVVLLQKIGAKTLSVSYPGAQGDKAILIGNGRQTKRIYVDIIAHKDSKKCFVLLQENKEKKNDLRQDEKKLLDIKDNHFDSLQELFHKIHTSYIEKDSLYLGLGSKFKLDSISPFFSVDYIFAFEIYSCDKYTNILWNVAIINLDLIHLFKPLLNAENKLQGMISLDLIYKA
complement(1843907..1844986)       PHAGE_Sulfol_STSV2_NC_020077: putative cytosine methylase; HCBAA847_1957; phage(gi448260206)     2.84e-09            HelicobactercinaediCCUG18818ATCCBAA847MCKYDINLLRKLDRIHPYPAKFIIDIALHYISNYSKQGDIVLDPFCGSGTTLLASRILKRNAIGFDINYIAYILSQSKILYLNVNDLKYLKEFQPDSSYIANILHNYDNISHWFERQSIESLSSIKEQINNFVENNHSYKIFLYMVFSSIINIASNQDSDTRYAAIKKPHINKSFIFDKFNEKLHQSIALYENLNLNDNHCAMFLHNSKTLTKKFNSEVSLILTSPPYPNTYDYYLYHKHRMLWLDFNVKFSMDNEIGSRREYSSLKLPKEKFNKDLFEIFFECNKILKRHGFVVIIMGDGKIAGKIYHAKDELVSLCEVFQWKLIKHSYSELDKTSRSFSSAFRTKNKKEHILIFQKA
complement(1844986..1845825)       PHAGE_Vibrio_SHOU24_NC_023569: modification methylase BamHII; HCBAA847_1958; phage(gi589890580)     2.84e-17            HelicobactercinaediCCUG18818ATCCBAA847MDKKSKDAFNGLSTQEWAKNSRSVWNDLSSPRSKNALKHGATFPQKLSDRVISLYSTKGDIVLDPFLGTGTSARSALSLERDFIGFELNMEFYEVALTSLRQDSSLFDKNKYNIKQGDCLELVEELENNSLQLTITSPPYADLIHKVVDDRTKRHKKSAFVIDNNATTKIYSRDTRDFGNMDFDSYMNAVLQFMQKLYTKTKSNGYNVWVVKDYRDTRNKIPYVDLHSNIANAGVKAGFKYHDLIIWDQNERRRLVLLGYPSVFYVNQNHSFIVVLRKP
