gi|00000000|ref|AP014525.1|  Vibrio cholerae MS6 DNA, complete genome, chromosome 2. 1093973, gc%: 46.82%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
731370..731382                     attL                                                                                 N/A                 GCAGTTCAAGGTG
745728..747107                     PROPHAGE_Xantho_306: integrase; MS6_A0834; phage(gi21242250)                         5.93e-06            VibriocholeraeMS6MTHQENLSNPQEVNKKVTKRSHYDSLSLSVFSSNPINPDCRNGINPHIRDTQKIYFTTLKKHNTFYLRVSQRAKQAQRAKQAHREHLKNESVTVSLRTESRREAKMRSDYLKDRLLEQAGSFIDFNHMRETLKEIAKAELLRRPKVDWFYRGNIIVAQEALQEAQTVEQVRFIQSYSDIMKKGLQSDTEGLLSIIDSVDSEQSKHSEPQDHKEHKEHKESLTIDELIDNYIADKISSGEWMESTKEKKGAKLQHLKTIFEACSLKDKPIDKLTRNDLLEVRTALINRGLKTLTVNGYMQDIRAIFNNAEALGLIGKSPAVKLNIKDRDIKEPKALTESEVIALIDYFKHGYFTEARRSKKTLEGMKYLKWVPQIAAVTGARLNEILQLRKGDIRQSANGLCWYIDINDRGDNVVKNKSSNRIVPLVDGAYGFDLELFLSEIVNTCNEDSDNIFRLVVVN
complement(747100..747972)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; MS6_A0835; phage(gi41057343)     2.73e-145           VibriocholeraeMS6MIIKKLKQSHSVKILCEVFNVHRSSYHYWLKRPALINAETIKLRSLISEAHAASNGSAGARTIADIVTNQGVKLSRYRATKLMRTLGLVSCQEPKHRYRKASQEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLSPDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCWDNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESERLYWENSKTVANFS
complement(747969..748277)         PROPHAGE_Xantho_33913: ISxac3 transposase; MS6_A0836; phage(gi21231087)              3.41e-08            VibriocholeraeMS6MTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAAQAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKATALLMSDSLNNS
748390..748872                     PHAGE_Shewan_1/40_NC_025470: Rha-like protein; MS6_A0837; phage(gi722121079)         9.51e-05            VibriocholeraeMS6MNKKEIQAYQSAFEKFNPFYGVDFPITSVKLCELINKMRNDHNEKVVELRHDHLMNKIREFSEQVNAPNFRVVESSYKDTKGEDRKCYLLGKTECRAIAATESKSVCYMIMVYLDQLEQIFEKAKEAKATEFDRKLSKQGVTWREACRTVGIEHPDLALK
748873..749166                     hypothetical protein; MS6_A0838                                                      N/A                 VibriocholeraeMS6MIKRGFFKRDFDGGLVVKPSLLADKSFKKADNLGINKEGFRVLTNGFKKLQEAAERIKWQCLQFSDRPKLQAMYKAKLEEHMKNQPKVYDEQGFEVE
749489..750337                     PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; MS6_A0839; phage(gi209901327)     2.40e-21            VibriocholeraeMS6MKYSLIKLSAMNSYSDCQQAIEDIEADPENYTTETRAAARIGGHCELLKGAKEKIKALEKKADSFIPSDDSEEVNTVSETSQRTYGYGRVSTDEQTTSQQLTAIREAGHKVSDNRFIVDEGVSGGVCAMERPAFRNLVENKLEKGDTLVIAKLDRLGRDNIDVQQVVQMLTDKGIKLFILDLPVADLSSPEGKLMLQMFATFAEFEKNRISERIRDKLKQLKQEGKALGRPTKNVYDDVQELKAQGISQRTIADKLNVSLSTVRRNWVDTKRSLEVVTESGQ
750575..750796                     transcription initiation factorTFIIIB, Brf1 subunit/transcription initiation factor TFIIB; MS6_A0840     N/A                 VibriocholeraeMS6MNNRLVEETIAEETIDCCPLCQHDEFFISADKEKFYCAKCGFHTNTLTSIQPMLAAKANLTHRFVHTGIKTRQ
complement(750992..751672)         putative phosphatase YieH; MS6_A0841                                                 N/A                 VibriocholeraeMS6MTESRVKCVIFDCEGTLVDSERLCCEALVQVFGELGVALSYQQVAEHFSGGKIADILHAACQLAKITADIDLLEQRYRSIVAATFRRKLSPMGGARALLNYLKRNQIEFCVASNAPREKIAMTLTLAGLEHYFEGRIFSAFDANSWKPEPDLIRYCAMNMGFTLDECIYVDDTPKGVEAGLNAEVLTFQLSPLNPQHRSHSQQVIVLSNLLQLAEYLSGSVMRQSA
complement(751811..752317)         hypothetical protein; MS6_A0842                                                      N/A                 VibriocholeraeMS6MIYSPSPVVAAKNQWLSSQVDVEFPTAQSLEGRDIYHALSRHTEVSLFQPQACDAPLLQEIYLVDFHRLTVWFALLQATRSSTQHEQERLVEFFTQIIYSPPCQLFLGFHLGEPVAAGMVTEHEHMVLLSDLVVKPNPLFDTREAFAQALYAKWQAITASDATPYIEL
752639..753121                     PHAGE_Aeromo_phiAS5_NC_014636: hypothetical protein; MS6_A0843; phage(gi310722759)     7.00e-09            VibriocholeraeMS6MLNSIRTALLLSFAFVLSGCDRSEVGDVSLGMFTLKDIKINNLTDPVVTGVTCHVASIEADLSLADPSDSSISCRQTGEITPEMIAQIDKSSSGEVVFQKSKSIFFKSMKIRRIFDAKNQTLMYLSYSTKETSGSFKHSLSTVPLWGTQAYNAFPETQNK
762986..762998                     attR                                                                                 N/A                 GCAGTTCAAGGTG

#### region 2 ####
912950..914071                     PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; MS6_A0983; phage(gi371496158)        8.89e-33            VibriocholeraeMS6MASVTLKNVCKAYGDVLISKNVDLEIQEGEFVVFVGPSGCGKSTLLRCIAGLEDITSGDLYIGEQRMNDVEPSKRGVGMVFQSYALYPHLNLYDNMSFGLKLSKANKSEIKKRVDHAAEILQLSHLLDRQPKALSGGQRQRVAIGRTLVSQPNVFLLDEPLSNLDAALRVQMRSEITKLQRKLGCTMIYVTHDQVEAMTMADKIVVLDAGFVSQVGKPLELYHYPQNRFVAGFIGSPKMNFMSVFIEGVEKDRVQVQLSNGTTFWIPVDGTTVTRGERMSLGIRPEHLVEAEHGDAKIEGKVMIVEKLGNETQVYMNLKGSDSDVIYRQPDTLDVETGDTLTIGIPAHRCHLFHSDGRACRRLHQEKGVDLPA
914293..914814                     PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; MS6_A0984; phage(gi9630137)     2.45e-11            VibriocholeraeMS6MNSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVEDAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLNRSE
914861..915064                     Rho-specific inhibitor of transcription termination; MS6_A0985                       N/A                 VibriocholeraeMS6MFHLPVKLTMKSGEVYYGVAADTQRNSQKQECIALRGEEETWLLETDQLSSMEALSEQPHFSVIHFK
complement(915202..915810)         PHAGE_Cyanop_P_TIM40_NC_028663: hypothetical protein; MS6_A0986; phage(gi966198291)     1.39e-05            VibriocholeraeMS6MALDGLMDAIADRGWYVWDDFLNPQEVQALRECIPERWKRAKIGRNEEIQRAADIRSDKIQWLDLSMGQPVQDYLERMEQIRCEVNRHFFLGLFEYEAHFAKYEAGDFYLKHLDSFRGNENRKLTTVFYLNENWTPADGGELKIYDLQDNWIETLAPVAGRLVVFLSERFPHEVLEAHADRVSIAGWFRTNGVSGNKLDIAN
916026..916346                     PHAGE_Rhodov_RS1_NC_020866: hypothetical protein; MS6_A0987; phage(gi472342875)      5.11e-19            VibriocholeraeMS6MIVTTTPNIEGKRIVRYCGVIAGEAILGANIFKDLFAGIRDIVGGRSGTYERELEKARAIALEELQQHAAALGANAVIGIDLDYETFGKANGMLMVSVSGTAVVVE
complement(916520..917194)         PHAGE_Altero_vB_AmaP_AD45_P1_NC_021532: hypothetical protein; MS6_A0988; phage(gi514051613)     5.00e-06            VibriocholeraeMS6MKDENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWAKNNIGIEEVNS
complement(917771..918049)         peptidyl-prolyl cis-trans isomerase PpiC; MS6_A0989                                  N/A                 VibriocholeraeMS6MARTAAALHILVKHKEQADDILAQLKKGAKFHVLAKKYSTCPSGKKGGDLGEFRQGQMVPAFDKACFQGEVLTPQLVKTKFGWHVVKVLYRT
918224..919144                     chemotaxis protein CheV; MS6_A0990                                                   N/A                 VibriocholeraeMS6MAKVVSKANQSQGMLMFTLSAQQQLFAIGTLKVREIVTYQPMTQIPYSHHHVIGTVTIRNLTVPVIDMAAAIGFRPIQPSEYQKCYLIVTDCLRTVVAFMVRTIEKIIECDWRQIESSPETAGHDVFVTGITRFQDKIVQLLDVELLLSKIYPQYESTKVPMLTDIERERLKPLNILLVDDSSIARKQLSDALDSINIPYHICKNGSEALDLMRDMARDHRAIDILVSDIEMPGLDGYELAFEMQNDPQLNHAYCILHTSLSSEICVDRAHQVGAHEALEKFNATELVEAMLRGAKKLQTQRLQKS
complement(919220..919747)         transcriptional regulator, MarR family; MS6_A0991                                    N/A                 VibriocholeraeMS6MDSVQKSVMEWANELPELNTLPMSVLHRLQRLARRIELKMEAFYQQAGLTAGEFEVLMTLRGVGHPYCLNPSDLQVRLLLSSGAMTNRLTRLERKGLVERNLSRYDRRNVEVALTEAGRQRIELWLPEYCDLQSSLLAKFSEVEQEALSTQLQEWLSHHEQLWCIPDLLNSDRQR
919919..920935                     PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; MS6_A0992; phage(gi100150)       2.17e-18            VibriocholeraeMS6MTTEDFKKSTANLKKVVPLMMKHHVAATPVNYALWYTYVDQAIPQLNAEMDSVLKNFGLCPPASGEHLYQQYIATKAETNINQLRANVEVLLGEISSSMSDTLSDTSSFANVIDKSFKDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQKDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVMPL
