gi|00000000|ref|AP017374.1|  Helicobacter cinaedi DNA, complete genome, strain: MRY08-1234. 2199263, gc%: 38.23%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1195995..1196336)       PHAGE_Lactob_LBR48_NC_027990: putative DNA methylase; HC081234_12450; phage(gi937456738)     2.09e-13            HelicobactercinaediMRDVWSFPAIASWEKTFGKHPTQKPLALLVRLLLMASNEDSIICDPFSGSSTTGIAANLLGRQFVGIEKESSFINLSIKCKSELDSKFKDIESKINDLRQIASFENLNKCRLI
complement(1196409..1196858)       PHAGE_Entero_phi92_NC_023693: Phi92_gp155; HC081234_12460; phage(gi726647089)        2.54e-07            HelicobactercinaediMTAKFHTLTPTFTSLDSTFSLYQGDCNALLPQMKESFDVIFADPPYFLSNDGLSIQSGKIVSVNKGEWDRGENIDKIDRFNMEWISNAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSCRYLTHSTEQII
complement(1196848..1197279)       type II restriction enzyme MjaIII; HC081234_12470                                    N/A                 HelicobactercinaediMGLDSNARKNRGGAFMESYLRDLFAKANLHFKKEVNIAEFSDLQRNFGDDKKRFDFVIFGKNISYFIECNFYTSGGSKLNETARAYQELAPKFDGFADKNFIWITDGQGWHSSKNKLQEAYKSVEMYNLNNVKDFIKKAQNDR
complement(1197363..1197545)       type II restriction enzyme MjaIII; HC081234_12480                                    N/A                 HelicobactercinaediMLGVPKDSLQDKITLLFNEYAKAFDVLPLILAIRNEKELVLDSNGNETPINAYLQSPKGI
complement(1197583..1197684)       hypothetical protein; HC081234_12490                                                 N/A                 HelicobactercinaediMKNTLAFEIFLSTLRVTNRDLGFFCRLAEVSSK
1197968..1198891                   PHAGE_Lactoc_P087_NC_012663: putative cysteine synthase; HC081234_12500; phage(gi229605000)     7.51e-58            HelicobactercinaediMHFHSSLELIGNTPLVELSRIAIPNNNRIFAKLESYNPAGGVKDRVALHILQKAQKEGKLHKDSVVIEATAGNTGLGIAFVCLHFNIKAILVVPDKFSTEKQILMRALGAEVINTPKELGIQGAIDKAKELLDSTPHSFSLHQFENPLNPQAHYETSGKEIYVQMQGVRDLAPVLDYFVCGAGSGGSFSGVAKYLKEQDSRIQAVLCDPIGSVIGGGQEGCANIEGIGNNFIPKTMDTSLIDRVEKISDEEAYQGLKILAREEGILAGISSGACLQACLKLAQEVENKLIVTLFADDLSRYLSKNLV
1198939..1199058                   DNA-cytosine methyltransferase; HC081234_12510                                       N/A                 HelicobactercinaediMQVSFIDLFAGVGGFHLALSQANNGGGGKILQNVYLQVR
1199286..1199843                   PHAGE_Oenoco_phiS11_NC_023571: DNA-cytosine methyltransferase; HC081234_12520; phage(gi589286656)     6.83e-55            HelicobactercinaediMLFLENVKNLKNHNNGKTFQVIKYTLESLNYIVYDSILNTATHANIPQNRERIFIIAFHKDKVKNHADFSFPSPIKLTKAIHNCIDSNKQDDSFYYTPKSKYYAWLEKEVIKQDSIYQLRRIYIRENKSKLCPTLTANMGTGGHNVPIIKDNYGIRKLTPRECFNFQGYPKSFKLPNLANSRLYM
1199911..1201041                   PHAGE_Oenoco_phiS11_NC_023571: putative type II restriction endonuclease; HC081234_12530; phage(gi589286655)     8.68e-43            HelicobactercinaediMGSLDFYAIDKEQNKNYAKSLSIIATLSRLFSDNTTPYLHYRIMENLFCDCFGFENLSRSDTAYDARLNHLGVGLKTFICNSNASIEKVAEFNKDSAFLKHITDKRDLAEKLAHLRNERIESANKIYDIKDSIYHIIARQDKKLLFFETDYKKININNIQKIKNNDKSLSFYDGSNEYIFNHSKSVLQRKFYIPKNPHILEIEIVKNPFELLLSLQDLQIKQHKEKIAGLDYVILPLYSMKGGVKNVPEKSGLNQWNAGGRTRKYGEVYIPVPREIHKKYPNFFPPRDEIFTLTTPNKEQLQAKLCQDNAKALMSNPNTDLAKWLLQTALHYKEGELVTYERMLELGFDSVIITKHSQSRFSIDIMPLDSYEKFIS
1201151..1202224                   PHAGE_Lactoc_jm2_NC_021860: putative HNH endonuclease; HC081234_12540; phage(gi526244810)     1.29e-09            HelicobactercinaediMDMIDTFTQVKECVYKGRTYSVRDNGAVFRHAKDKICKNDNYWSFGTLNHKNGYLHLGSARVHRIVALAFLGEPPTQEHIVDHIDTNRQNNRPENLRYLTRLENALLNPLTRQKIIYHCGSIEAFLKNPKILREKVVANESQNFQWMRQVSVEEAQNCLKNLEYLFLQRKSNKKELSYQNNSLGEWIYKPLYFTDTQPSESIQDDFYDTQAISPANAKQRDWRTPSEFPLCPNTNEPNPLETYAKNMQQGKVFASNQYGTSVIMEYALLQGNMPQDRQNIKDSHIQDSKVNENALLVLCKFEPPNAKAYSLAKVTYENDCFIHTALGTYFDENGGRKYFTLAQGLEWKGGEVFDDYC

#### region 2 ####
1744819..1744832                   attL                                                                                 N/A                 ATAAAGATTCTAAA
complement(1748947..1749387)       PHAGE_Lactoc_TP901_1_NC_002747: REP; HC081234_18620; phage(gi13786544)               1.17e-05            HelicobactercinaediMIQKNQQLNNFTILSSDILHDKSLSMGARMFYALAQSFSDDWNINIKHFAKLLNVSEASVRKFRNELVNASLLAYSQVRDEKGKLTQESVYTFNTLEVVDFQYVSEKVERLDLVEQEATNTENVESYPFKHLSAYGYSSDLSNIII
complement(1749409..1749531)       hypothetical protein; HC081234_18630                                                 N/A                 HelicobactercinaediMRNALSLRCFLGSLRFRARSYLSGSAEARNANLQKLNLKK
complement(1749648..1749923)       PHAGE_Helico_phiHP33_NC_016568: DNA repair protein; HC081234_18640; phage(gi371671349)     2.30e-18            HelicobactercinaediMFLIDSQMRLVSPNGRNIEEEESLKFSTLARLCHSLGILVFLIVQTSKGDRDNPMGSKKGGHESSITIRIEHDKPKNESVREFSEDSRIVI
complement(1749926..1750066)       hypothetical protein; HC081234_18650                                                 N/A                 HelicobactercinaediMAKTNKVCFFSFEFPIYSKEKISSSLMMAMRFIKWLKISKRFTSKV
complement(1750098..1750478)       PHAGE_Helico_phiHP33_NC_016568: DNA repair protein; HC081234_18660; phage(gi371671349)     1.61e-05            HelicobactercinaediMSKNAFVGKLSKKEQEQDYFLDILSHIPNANVVRLTQSFYESFLKQKEAGLKLLEASENNALLDMNALIPNVNFCSHKNMQEWQDYYDTLPKMPKYKTGINFLDSVFDGGDRICPACFNQWRPRNR
complement(1750482..1750628)       PHAGE_Helico_KHP30_NC_019928: putative DNA helicase, putative DNA repair protein; HC081234_18670; phage(gi431810548)     3.68e-05            HelicobactercinaediMIELEKEIMASFLAYPQQIDEFLAQIPKEYFTQKGQRTLEILIELLES
complement(1750631..1750783)       hypothetical protein; HC081234_18680                                                 N/A                 HelicobactercinaediMSFWYVCKECGYINEVDCIEINIQIKLNSQKAVSCICSECDNRQDIIIEV
complement(1750780..1750926)       PHAGE_Helico_phiHP33_NC_016568: integrase/recombinase; HC081234_18690; phage(gi371671343)     1.90e-06            HelicobactercinaediMWVSSMLGHKSLQTTFQHYVKYIPQNKKRASFLDNFTLKTHSTQKDSL
complement(1750937..1751098)       hypothetical protein; HC081234_18700                                                 N/A                 HelicobactercinaediMEVKHTNLYKRNGIIYIDATLTEIGRVRFSTKLKDTKENMAKTLLSAKDLVSK
1751144..1751257                   hypothetical protein; HC081234_18710                                                 N/A                 HelicobactercinaediMIFHCKICFLKKCVRFVNEMDFVIRSSDMKGDFQGVE
complement(1751419..1751925)       PHAGE_Temper_phiNIH1.1_NC_003157: putative methionine sulfoxide reductase; HC081234_18720; phage(gi16271776)     1.04e-46            HelicobactercinaediMAVIYLAGGCFWGMQGYFDRLKGVLDSSVGYANSKIANPSYDLVCSGASGAVETLKLEYDESALSLREIIERFLSIIDPCALNYQGNDRGTQYRNGVYYEDSQSESVIRECLKKWEQGQNRKAVTEILPLANFYEAESYHQKYLEKNPNGYCHIDIESALHSFQGFDK
1761504..1761517                   attR                                                                                 N/A                 ATAAAGATTCTAAA

#### region 3 ####
1817773..1819569                   PHAGE_Entero_JenK1_NC_029021: glutamine amidotransferases class-II (GATase) / queuosine biosynthesis QueC ATPase; HC081234_19370; phage(gi971766407)     3.82e-09            HelicobactercinaediMCGIVGYIGRDEKKQILLNGLKELEYRGYDSAGIAVLSLDELQTFKTVGKLENLESKCRDFSFQGFGVSIGHTRWATHGKPTEANAHPHIADFSNVVHNGIIENYQELKTMLESKGHSFISQTDTEVIVHLFEEKLKNTQDCYTAFTSTIAELKGAFAILLITKLAPDSIFYAKNGSPLIIGKSASQEDEIYFASSDAPLIGFVDSVVYLNDGDMGVMKLGSFSQLKNPKKLDSSKGYAQKEGFRYFMEKEIYEQHKVLLETMMGRVSEGDITLSEIESGFFDDIQSISICACGTSYHAGLSAKYLFERLAKIKTNVLIASEFRYAKPVMDKNELFIVISQSGETADTLEALKLAKKNGLKSLAICNVDNSSIVRESSVSLLTRAGIEKGVASTKAFATQMMLLWILSVYVGKLRGHIKQDELKTHIAQMVESAKATKVDSAMHEHIKRLSKRYLHGHGFFFIGRDIFYPLALEGALKLKEISYLHAEGYPSGEMKHGPIALADAELFTLALMPKHLLFDKIKSNVEELSARDATICAVSTEQIQGVDDMLLVQPCQSYMEEFFSMMVVLQIFALEVAIRLGNDVDMPRNLAKSVTVE
complement(1819573..1820046)       predicted membrane-associated; HC081234_19380                                        N/A                 HelicobactercinaediMSALMLLGLGLGCIVAEIFFGSFFLLFIGLGLCITAGIEAFVGFGNIIGGSVESVYAWQAVSICAFAFLTLILLRKPIKSWFKGLKVYEDSLQNGGGVGEIQQGMVYFKGTLWAYEKALTLDSNGLESGTLESNTPLKEGDRVQVLEIRDNKAIIKA
complement(1820151..1821053)       PROPHAGE_Escher_Sakai: FtsH protease regulator HflC; HC081234_19390; phage(gi15834405)     9.96e-09            HelicobactercinaediMLIFTGVVLVLCVAVLAFGIKIISQTDIAIVERLGRFHRVLDGGFHFIIPIIDRLSAVVSAREQMIDIGRQQVITKDNVNINIDGIVFLKVFDAKSAVYSVNDYKQAIANLATTTLRGEIGRINLDDSLSSRDRLNAALQVALGDAANNWGVKIMRVEISEISVPKDIENAMNLQMKAEREKRAIELKAQAEKEALIRNAEALKQEKVLQAEAIERMADAKKYEQIALAQGQSDAMELIANQMSKNAQAAEFLLTKERIVAFTELSKNPSKDKVIIPYETSEFIGGLSVIGEFLGKGKKA
complement(1821257..1821433)       type IIS restriction enzyme R protein; HC081234_19400                                N/A                 HelicobactercinaediMVYIDAFSHAKITQNNNANFSDFNDCVVHCENNINIKYDTEKQELMLDYNKRILDSKV
complement(1821468..1822460)       type IIS restriction enzyme R protein; HC081234_19410                                N/A                 HelicobactercinaediMDKVLQEILQIDSSRECIKFLVKRVQSDNYRGLQISQHNRYTQKEILVILQEIYELCGDTLLQIRTSDLSKRPYNIEGEEKYAELTTKISSKLGRCTQDSLRKNIFVDLHRMGLIDRFNAKKKQLNPFDNGTKKYIALTDFGIEFLQSTDIFTHNLLFTRALENLMQGFGEEILHIILELESNYLTLYEVLFFVTFLYQKLDSKTYNRSDIISLIRDYRTLSKFQKQALLEKVKDYCEPKNFSGDKTQKRDFHNFLNETQQILSLLTQMAYFEYNKNDSKLYIRTGTYGIYEDNTKLKRSIKEKDLYFEKHNITKEKGTSSYCAFVFGCK
complement(1822460..1822618)       PHAGE_Prochl_P_RSM4_NC_015283: DNA adenine methylase; HC081234_19420; phage(gi326782796)     3.17e-10            HelicobactercinaediMIKASSKKGDLVLDLFSGSGMTSLVARDLERNFIGCEASIEYVDSSLNIKEC
complement(1822768..1823223)       PHAGE_Vibrio_VP58.5_NC_027981: gp53 protein; HC081234_19430; phage(gi937456124)      2.81e-10            HelicobactercinaediMLNKIYIQDCFSFLESLTDSSIDLAIIDPPYNLKIASWDSFKSEKEFLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEKAVFQNFITWYKKDGLSYTKKRFVNNQESILFYTMDSKSYCFNPESIRVPYESTSRIEHAKKMES
complement(1823213..1823653)       PHAGE_Sulfol_YNP1_NC_029027: putative type II restriction modification system, methylation subunit; HC081234_19440; phage(gi971767019)     1.22e-22            HelicobactercinaediMFGSYPYPRNFYAQNTSEFITIYVKDGKPQNTPQELKEQSKLSQKEWVQFTKQIWDIPIPNKADSAFGKHATIMPEAIPYRLIKLYSFIGDIVLDPFAGSGTTLKVAKELGRNFIGYEIYPHYKSVIEEKLGESGLFAMQGQGNAQ
complement(1823681..1823845)       type II DNA modification enzyme (methyltransferase); HC081234_19450                  N/A                 HelicobactercinaediMLKPNGKLCINVPLMPMFKRDLNTHYNRHIFDLQSDIQHSILESTPLFLLDLYI
complement(1823911..1824075)       PHAGE_Sulfol_STSV1_NC_006268: Cytosine methylase, similar to N4-cytosine methylase; HC081234_19460; phage(gi51980192)     3.85e-05            HelicobactercinaediMNKIFYKSSQNMCEVSECSVDLIITSPPYFNIKDYSKDGYQNVKHSAVAGGRGI
complement(1824101..1824238)       type IIS restriction enzyme; HC081234_19470                                          N/A                 HelicobactercinaediMLQFVESFIKALQKECIKSVVLWQEKEREACKNVVKCDYKTNKAK
complement(1824246..1825403)       PHAGE_Salmon_7_11_NC_015938: hypothetical protein; HC081234_19480; phage(gi345461254)     5.00e-05            HelicobactercinaediMRQVNMRHKRSNTDLFFDSFKHLKHNLSNLIGVELPTLCHLGAERYLSLISTNYKSKYPDMRKLGLIDYNKPSDYSFSLSLEAEKIKEAFGNFWGIYAYDENIIKSERKNIDSLPPEDLISPNPHINFYKYKLSILQLILSYYDTADSIRPYLVLLNYMKNYGIRNLNRDLLKNILAHTKEDILLMRYNQNAFVSLDDETKIELNRPISYIYNFLITALVVDYSYNIIVDFNLVDRLNATMNNNVLYYFTQNRSRPAKEQRLFRESVLKAYDYKCAITGKSLLIDDRCLLEAAHIIPYRDGGSFVVNNGIALSYEMHKMFDNGLFSFTYKNDDEIVIITSSSNRITDKQGILADLDNKPIFLPEQLDVRPDPLALQYNKDKFYLT
complement(1825403..1827475)       PHAGE_Synech_S_CAM3_NC_031906: dNMP kinase; HC081234_19490; phage(gi100169)          5.16e-51            HelicobactercinaediMAKKLLNSQCYQLHDFTQQSLQEILNGDSLYILKNHIADNFIDIIITSPPYNVAHKYENYNDDLDFESYLNAMRDIFKECYRVLKDDGRICVNVPFAVKNRDSKEVRFLSVYMTQILNEIGFKEFELITWHKGKDIKHFQGNNTAWGSWKSPSCPSFRPLGEAVLVFYKNERIHKGSSANIDTSSEEFKEWTKNIWYFDENGKQGFENVLCASNNAKKDLHPAPYPEELIERLLKIYSYQNDIVLDPFNGTGTTTYVANQLHRQFIGIELSSKYCKIAIERLQKTTNSQTTPIIKSYPTILTNLVNSDDTRDSLNEVFPYKEAFSPYLIEHLQNRFVCSIASVYDPFCGVGSSFLNTQTQICYGFDTSAFALNVAKVKLEKLDSKHLKKAEKNIRNFMPSNREYPFPQWESFGKYADKKRFNLIMDFIESFKDVDSKIYHFVSFLVLCNLEKMLHFKKDGNGIKYRESKIRDIESYLKALTLRAFELKKEFDRNNSKLIILENRSSINNKPKDKVDCILTSPPYANLFDYFEIYKMELWSSKIVKSYEEWKKLKKTALRNNKNAALKQQDKIENTLLNHTLETLKNKGIESSTLTMLNNYFFDMQKVLKNCFEVLKDNGFCFIVVGNSCYKGVPIQTDEILAQEAQKLGFECKEIIIARKLKTSSQQMKVIDSKAKFYLRESIIVLQKEK
