gi|00000000|ref|AP018132.1|  Bifidobacterium bifidum DNA, complete genome, strain: TMC 3115. 2178894, gc%: 62.79%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
265023..267527                     PHAGE_Bacill_0305phi8_36_NC_009760: PcrA helicase; BBTM_00352; phage(gi156564011)     6.86e-14            BifidobacteriumbifidumMADIRTMNKPVVALGSDLMRSLLELPKKAQKHATTFLTKFQANPRSSGINLERIANAADEKLYSARIDQRYRAIIAFQKSSNVYVLLYVGDHDDAYKWAETKRISVNPNTRAIQLYDMAPQEEIDAAIRDDLQNEVGWGSVAANVPQPDSAVPESVSPPMEDHDGTNHGTASASATSAVASKTPQQAPQQASESHTGPLPDTYRALTDNDMRRFGVPDMYVPVMCTRKTWEAFERWGSKLPKDAFAYLTFVAEGLPKSEVFSLLDETEGQTSDRLGLEQQIPASSIDSGEETDPGDFRAALSSYASQQSFVVVQGEADLKRILDAPLEQWRVFLHPSQRLYVEHDYHGPFRLLGGAGTGKTVVAMHRAKRLAARLLRNGSRQKVLFTTYSRNLATDIASNLKLICTADEFNAIDVVNLDKLVKDLLTSHGYSGEIWYDGSFDHGNDLDDAWRKAIASIGVNDPKLTVSFFKSELSQVIVPQQVRNAADYMRVLRKGRGTRLNRAQKLAVWQVVETYRRIMQTNNAYDVDTAMQNAVSLLTQGDAPRKYAHVVVDEGQDFSTPAYRVIRALVDEGDNDIFIVGDAQQRIYGHTAVLSKCGIRIQGRARKLRINYRTTEQIRSAADSIFRSSGADVADSVFAAVRGIGDASPATTFDDLDGEESPTGDSRSLMNGPVPETRRFASQSDEMDAVREWIYGLCGTAEDAASDESDGGRVDSRNVCVVARSRYCIDQWREALNNGLPYGVYQLGRDAENRQRQGIRVATMHRVKGLEFDYVVVVDVNDGVCPPKPVLQSAGADSASLNEIYREERSLIYVAMTRAKKGVLLTGVSAQVG
267541..269058                     PHAGE_Entero_HK630_NC_019723: Ea59 protein; BBTM_00353; phage(gi428782813)           2.42e-48            BifidobacteriumbifidumMASNVSMFYTKKELALKESAERKKGKRVFYLESDGWNDYGYETLFELYWTDEDNKFHEIGPVKIAHKSEKITRDLLENSFSRLEENFCSLGIDDKYYININKNKLHDVLISLNDLILSKKIDYVSSSGFYQVSLMRKYESDKEGAEKYISTVRDIVDKGLAEVGLFHLEYVFNSEAENREENEYLIRKIVFEADSKVFPPENIHVLIGENGVGKTTFLKGIAEKYSGINEDVNHIIYISTNRLDADVNQAGSMDIFSSDALKKLLVDISRSNRLSEKLMNSLRRIAQNVKFYGLDFISKIDFYLEENNSNEFRKWIADESNVDQCSAGQKEVLFVFAFMIYKFNTSRSLLIIDEPENYLHAPLLSAYINEIRSFLSNERTGAMAIFATHSPVVLREIPRKCVYVLRSRDGLRYVSHPNIETFGENLGVLLNEVFGVNADKSGYFSFLKDTVKKIPKEKVEKKYNKPFSKESLSSYCMDEFGEKLGMEARALLPYIVGEAWPKGQQ
complement(269270..269689)         PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; BBTM_00354; phage(gi985761242)     6.99e-08            BifidobacteriumbifidumMLSKTPPTHREWASAALKAIFAMESRESALAKAEQVATEMESRRLKAAANCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERLNREIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRYLDMSRLGDNLVEAN
complement(269749..270933)         PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; BBTM_00356; phage(gi985761243)     5.12e-36            BifidobacteriumbifidumMPENIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEIANAAKYERTGERKAYRAGHYGRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEEALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVYGEIEAWRTRPLEDEYPYVFMDGVWHKRSWGGHVENVSVLVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKGVRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVLSKTPPTHREWASAALKAIFAMESRESALAKAEQVATEMESRRLKAAANCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERLNREIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRYLDMSRLGDNLVEAN
complement(271013..271828)         PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; BBTM_00357; phage(gi985761243)     1.05e-37            BifidobacteriumbifidumMPENIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEIANAAKYERTGERKAYRAGHYDRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEEALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVYGEIEAWRTRPLEDEYPYVFMDGVWHKRSWGGHVENVSVLVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKGVRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVDNARFFAHFRIPGLT
272465..273649                     PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; BBTM_00359; phage(gi985761243)     1.76e-36            BifidobacteriumbifidumMPENIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEIANAAKYERTGERKAYRAGHYDRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEEALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVYGEIEAWRTRPLEDEYPYVFMDGVWHKRSWGGHVENVSVLVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKGVRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVLSKTPPTHREWASAALKAIFAMESRESALAKAEQVATEMESRRLKAAANCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERLNREIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRYLDMSRLGDNLVEAN

#### region 2 ####
1079022..1079810                   PROPHAGE_Escher_MG1655: IS30 transposase; BBTM_01453; phage(gi16132105)              6.32e-07            BifidobacteriumbifidumMTGSHRNEDRGGERRWTFNGVEYPTRKLMCAARREEYVRLLDEKGMNFTQAAHAVGVSKRTGKVWRNGRTRATGRNERASMDWYRSTMDKPKRIHARYLNQEERILIADRLRPGDSIRAIARLPGRDPGAVSREVERNRNPGIGDCGPCRAQQKAADRLKRPRPRKAAEGTPLWVEILAGLRRHWSPEQIANRPRWRTGRSPATGRATSSPAPATKARSARSSSARPGSRSCSTCPMGTTPNTSSGPSSTKWPRCPNSCAIR
1079774..1080088                   PHAGE_Staphy_phiPV83_NC_002486: transposase; BBTM_01455; phage(gi9635740)            9.62e-20            BifidobacteriumbifidumMASLPELLRNSLTWDQGAELALHKRITTAPDMQVYFCDPHSPWRRGSNENTNGLPRRYFPKGTDLSVHPEDYLDAVAEELNDRPRKTLGYMKPSEKIIELLDAA
complement(1080309..1081190)       aldo/keto reductase; BBTM_01456                                                      N/A                 BifidobacteriumbifidumMTIKEMHMVLHRNLGPFGTTAIGLGEMPLTIENNLGHDKGIETIHAALDAGCRHLDTAWAYYCSGGEEQTGEKLIREAMASWNGPKDEVTIATKVGHFRNFTDGRPTWDVDGRPENLIKRGKESALALGVDTIDLLYFHRPDPKVPYNESVEAIKQLVDEGVAQEAGISNASIEQIDIARGILGDKLIAVQNQYSPIYLDTADTLEYTAKVGLNFVCWSPLGGFRKPKDETKFDPFREIAAARGVSYQQVVLAWELAKGDHVFVIPGAHRPETILDSLHAGDLELTPDELVRL
1081621..1081878                   PHAGE_Gordon_Gsput1_NC_030932: hypothetical protein; BBTM_01457; phage(gi100055)     1.68e-17            BifidobacteriumbifidumMTVTVFTKPYCPQCDATKRQLTKQGVIFETVNLEQNPETLAQLQQAGFQQAPVVITPDASWTGYRPDLIRELAKKLAKKTAPVAA
1081875..1082447                   PHAGE_Staphy_SPbeta_like_NC_029119: putative NrdI-like protein; BBTM_01458; phage(gi985761171)     3.56e-16            BifidobacteriumbifidumMNGRAPATPGTPQPHQRSTPIDLTAAHAIPAADSTTPSTPEQPAGNTVEHIGAVVYFSSASENTARFIESCQLSGIGIAVYRIPLKPGSAPLNVREPYVLMVPTYGGGDAKKAVPPQVKRFLNNPANRAWIRGVVASGNTNFGTAYCAAGDIIAAKCRVPFLYRFELMGTREDTRKVRDGLVRFFRDHRG
1082498..1084693                   PHAGE_Lactoc_phiL47_NC_023574: ribonucleotide-diphosphate reductase subunit alpha; BBTM_01459; phage(gi589890883)     0.0                 BifidobacteriumbifidumMTDFTDTELPLDNTTDTTVEQYDPAHDYHALNAMLNLYDADGRIQFGKDKAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDGFYAHAESSGFEFGTFLGAFKFYTSYALKTFDGKLYLEDFPQRCAAVALELAAGSEQRAVEYLDEMLSGAFQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSPYDAERVYGKPFADISITEHYDEMVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPIAGRITMSNLCSEILQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMDAGLAGTVETAIRALTSVSEHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAYRASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAIPTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRVYYPAAYMTNENLEYYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIRIRQQALEGTEVQGCVSCTL
1084979..1085971                   PHAGE_Mycoba_PegLeg_NC_021299: NrdG; BBTM_01461; phage(gi508177953)                  0.0                 BifidobacteriumbifidumMAPISVPRKPLKLIDRVSAINWNRLEDEKDLEVWDRLTGNFWLPEKVPVSNDIPSWQKMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDTAFDWSERNEFLQKKAEIVLDYYEGDSPLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYERVGLTDDVEKFLRYNGNKALMNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETDDEDWDF

#### region 3 ####
1337428..1337443                   attL                                                                                 N/A                 TGCCCACGCCGCGCGG
complement(1347407..1348609)       PHAGE_Bacill_G_NC_023719: gp245; BBTM_01780; phage(gi593777701)                      9.96e-11            BifidobacteriumbifidumMQQTSDIALKVTNVSKSFKLPTEKSSSLKNSLFNLIRGVHGYTIQEVLKDISFEVHKGDFFGIVGQNGSGKSTLLKIISQIYTPNTGSVQVEGKLVPFIELGVGFNPELTGRENVYLNGAMLGFSKDEIDAMYDDIVDFAELGDFMEQKLKNYSSGMQVRLAFSVAIKSQGDILVLDEVLAVGDEAFQKKCQDFFFDAKREKKTIILVTHSMNDVRKYCNKAMLIENGHITKFGKPDEVANAYSNIFLRRQQAEVAAENNEKKLSTSAACELKDIKVVVSDEERQLLDINEDFVVEATLECKRDLKGGVFAINLIDQEGRVSVAASTRSCKGEGIFAKGTHRIRFNIGNTLPYGSFHINIAVAEGYDLVLRQENVYNFGIKKDKEYNQVLMHPHIDVSVL
complement(1348621..1348770)       hypothetical protein; BBTM_01782                                                     N/A                 BifidobacteriumbifidumMLIAPENQTVWQSFSTSLVGLIPVALSVVIFIGGLVFFESRSKLFAELV
complement(1349476..1350369)       PHAGE_Escher_phAPEC8_NC_020079: putative glucose-1-phosphate thymidylyltransferase; BBTM_01783; phage(gi448260372)     5.85e-123           BifidobacteriumbifidumMKGIILAGGSGTRLYPLTTVTSKQLLPVYDKPMIYYPLSVLMMAGIRDILIISTPHDLPNFERLLGDGSQYGVSFSYKVQPSPDGLAQAFLLGEEFIDGEPCALVLGDNIFYGNGLGRTLRKAAAAEHGATVFGYYVDDPERYGVVEFDENKKAISIVEKPEHPASNYAVTGLYFYDERVVEFAKRIKPSARGELEITDLNRMYLEDGSLNVQTLGRGYAWLDTGTMDSLFEAGEFVRTVQRAQGLPIAVAEEIAFENGWIDREQLMKAAEKYGKSPYGKHLKDVADNKIIVKSKHD
complement(1350487..1350600)       hypothetical protein; BBTM_01784                                                     N/A                 BifidobacteriumbifidumMRKNSDVVLLGGVLLLTRKRINRSLESLNRNESGFAQ
1350705..1351532                   PHAGE_Paenib_Vegas_NC_028767: transposase; BBTM_01785; phage(gi971741608)            1.52e-43            BifidobacteriumbifidumMPENIIQIDQHMLETRLDRLVTQKVTEILNAMLDAEADEIAGASRYERSGGWKAYRADHYERRITAKAGTLELKVPKLKGALFESAVVERYRRRGESVEEALIDMYLAGVSTRQVDDISQLLWGERMPSQTLSDKLKRVYADIDSWRTRPLEREYPYVFMDGVWHRRSWGGSVENVSVLVAVGVDSEGHREVIGVAEGMKEDSASWEQFVRGMIERGLRGVRLVVGDRCAGLVSTVRSMLPRAGYQRCMGWCRFVGLLYPCFLIMPRVRARGAGP
complement(1351495..1352088)       PROPHAGE_Escher_MG1655: IS150 transposase B; BBTM_01786; phage(gi16131429)           8.22e-38            BifidobacteriumbifidumMVPLFKSAKRYSSYKGELTRAPENLVNRDFHADRPNMLRVTDLTEFSIPAGKAYLSPLIDCYDGLPVAWTIGTSPNAELADGMLSDACSTLGEGDRPVIHSDRGCHYRWPEWIRICEEHKLTRSMSAKGCSPDNAAAEGFFGRLKQEFFHKRSFAGVSMDEFIGMLDDYMVWYRDKRIKTEFGMSIMGRRRELGLVA
complement(1352132..1353034)       transposase; BBTM_01787                                                              N/A                 BifidobacteriumbifidumMWYRERLEEERAGVPSRRGERQRRYSEEQKCAAVDHYLECGRRLSRTMRMLGYPESKELLMAWIDELAPGRRRLRHGPVPEELKRKAVVAVASGRLKSHEAAAELGVQAAVVREWKRQMLAGSKETHVARERRERPGDGGGARPVVPDAPAVAAGSRDAAGLADALASMEKRLARMQARLDELDADVERQRREKRELDVEIAIRRGALELLGKEPGADPENLTNREKTILVKQISEAQSVSVKSLLPVVGLAHSTYHYRLNAMRRPDRDAWLLPLVEGRSRTARSATATSACTWNCRAWG
complement(1353210..1353350)       hypothetical protein; BBTM_01788                                                     N/A                 BifidobacteriumbifidumMGRGFEAGRPDRLHVAGIACVRMANGRFGCTAPGRRRARPRVYVIK
complement(1353729..1354049)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; BBTM_01790; phage(gi157166066)     6.65e-08            BifidobacteriumbifidumMAKGAGCTPEFRAKAVGLLTESRGSCSSETRAVDQVAGDPGVAPETLRRWSDKTGAAVAAETRQSAGDAMAELRGSRAEAARLGRVNGILTAASAFFAARLGPARR
1354109..1354375                   PHAGE_Paenib_Tripp_NC_028930: transposase; BBTM_01791; phage(gi971756981)            3.15e-06            BifidobacteriumbifidumMAAPGAFMGARPPMDRAHEGDPTRPPAESFGLTPGVPPRRNRTAPWDCDREAHKGRNMVERVFNRMKHHRKAATRQTGPTRPSSPTSG
complement(1354581..1356029)       PHAGE_Escher_phAPEC8_NC_020079: putative dTDP-4-dehydrorhamnose reductase; BBTM_01792; phage(gi448260370)     3.67e-26            BifidobacteriumbifidumMDFEKELKVERTNIPGLIVFDLPVHGDNRGWFKENWQRAKMTALGLPDFGPVQNNISFNAKKGVTRGIHAEPWDKYISIATGAVFGAWVDLRPGESFGQVYTTRLDPSKAIYVPRGVGNSFQALEDGTAYTYLVNAHWSLEQKKTYTFVNLADPELDIQWPIPLEESERSEADLHHPMLRDARPMAPRRTMVTGCNGQLGHAIRDYVEEHGLEGFEFNDIDTFDFSDPAQYDRFDWSLYGTIINAGAYTAVDRAETPEGRPVAWKANAQGPALLARVAHEHNITLVHVSSDYVFDGTAEEHDEEEAFAPLGVYGQTKAAGDIAVANAPRHYILRSSWVIGEGRNFVKTMMALSDRVADARDGLDEVTVVDDQYGRLTFTRDMAEAIFHLLDSGAPFGTYDLTGSGAVRSWADIARKVFDQANGNGDRVRPISTAEYFANAKAPVSPRPTHSALSLAKIENAGYHAPDWEETLKTYVAKELGK
1355675..1355690                   attR                                                                                 N/A                 TGCCCACGCCGCGCGG
1356215..1357399                   PHAGE_Paenib_Vegas_NC_028767: transposase; BBTM_01795; phage(gi971741608)            8.11e-66            BifidobacteriumbifidumMPENIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEIANAAKYERTGERKAYRAGHYGRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEEALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVYGEIEAWRTRPLEDEYPYVFMDGVWHKRSWGGHVENVSVLVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKGVRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVLSKTPPTHREWASAALKAIFAMESRESALAKAEQVATEMESRRLKAAANCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERLNREIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRYLDMSRLGDNLVEAN
