gi|00000000|ref|AP018377.1|  Neisseria gonorrhoeae FC428 DNA, complete genome. 2218551, gc%: 52.39%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
442280..442291                     attL                                                                                 N/A                 TGCCGTCTGAAA
444790..444801                     attL                                                                                 N/A                 AAAAATGCCGTC
451751..452203                     PHAGE_Erwini_vB_EamP_S6_NC_019514: deoxyuridine 5'-triphosphate nucleotidohydrolase; NgFC428_00460; phage(gi422935886)     1.54e-63            NeisseriagonorrhoeaeMNIEVEMKVLDERMADFIPAYATEGSAGLDLRACLNEEVVLQPGGTLLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNRSSEPFTVKPFERIAQMVVVPVVQARFKRVEEFVGSSRGEGGFGSTGSH
452281..453468                     succinyldiaminopimelate transaminase; NgFC428_00461                                  N/A                 NeisseriagonorrhoeaeMNTLLKQLKPYPFARLREAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLRELEKYPLTAGLPELRQACANWLKRRYDGLTVNPDNEILPVLGSREALFSFVQTVLNPVSDGLKPVIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWERTKLVFVCSPNNPSGSVPDLDGWREVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQSGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQHASIAAWNDEQHVIDNRRMYQEKFERVIPILQQVFDVKLPDASFYIWLKVPNGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAETIVSLYR
453779..454558                     Protein of uncharacterised function DUF328; NgFC428_00462                            N/A                 NeisseriagonorrhoeaeMFFVLSPAKNLNEKDPCPVSEFTQPDLLAESEILMRQLRELAPQQIAELMHVSDKIALLNAERNAAWHTPFTPENAKQAVFMFNGDVYEGMDANTLNTNQIQYLQGHVRLLSGLYGLLRPLDLIQPYRLEMGTSFANLRGKNLYEFWGGIITNLLNDTLAQAGSNTLVNLASQEYFKSVNTKKLRARLITPIFKDEKNGKYKIISFYAKRARGLMVRYAAEHNITDPEMLKNFNYEGYAFNDAASNESEWVFMRSEQIK
454641..454731                     tRNA                                                                                 N/A                 GGAAGCGTGGCAGAGCGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTTGATAGCCCTCCGTGAGTTCGAATCTCACCGCTTCCGCCA
454809..454897                     tRNA                                                                                 N/A                 GGAAACGTGGCAGAGAGGCTGAATGCAGCGGACTCGAAATCCGCTGAGGGTGCAAATCCTCCGTGGGTTCGAATCCCGCCGTTTCCGCC
455089..456282                     PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; NgFC428_00465; phage(gi16130540)     1.50e-58            NeisseriagonorrhoeaeMAKIITPLSANQVKNAKPRDKLYKLSDGGLALWVYPTGGRSWKLSFVQDGRQQTISLGRYPDFSLTDAREWREEVRRKRAHGENVVNKKVRADFAFEKVARDWFVRWSKGRSEKYAGQVMRNFERWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKMVFAFAVGSGMMEINPVAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRVHIHPVTRFCIYWLLLTMTRIREAALMEWSELDGEVWRIPAERKKERRGHDVPLSRAMRWVLDQARGLNVNGRFVFESVNFQGHINKESPRVAMRRSGLDTTAHGLRSLARTYLREVLKVYNDVAEKLLAHSLGTRTQTAYNRSELWEERKDAPERWGNDVLRLADNGK
complement(456638..456907)         phage associated protein; NgFC428_00466                                              N/A                 NeisseriagonorrhoeaeMESSDVQGRMETLAFATAPKKGGIRKSGFGRVILIKSGHIVIHNADGDSFATGYGVIAADIVSPDLKTDFDIFFPPESLLRYKKIGKKK
complement(456965..457105)         hypothetical protein; NgFC428_00467                                                  N/A                 NeisseriagonorrhoeaeMNRDGSGCGNFGGLGKGYAEYERRNCRMPSRKKAETRTNQNQRKED
complement(457102..457785)         PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NgFC428_00468; phage(gi100005)     1.38e-24            NeisseriagonorrhoeaeMDKEKVLDKIKKCLALGRSANEHEAAQALRQAQALMEKYKVNAEDIALSKVSEQKADRKMAFKLAGWQWGVANMIADIFGCKSYQRGKTMMFYGIGNRAETSAYAFDVVYRQISADRRKFLKTCRAGKPSHRTYLADRFCGGWIASAWETVKKFEMSDEEKAIMDGYKKKEYPDMAEARTRDAKSSILQGSKMEYEALTRGMESGKQVKLHYAVNGTGFVKQIGGQT
complement(457796..458332)         PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; NgFC428_00469; phage(gi970580043)     3.63e-13            NeisseriagonorrhoeaeMQTVATKPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLVAAKVRRYCGEHPGVFDGAAGSRQLERYIKPSEFHAVEIQPEACKALLQNYPAAAGNLGRRKQKKPRVRKRISPSRMARPNRKQSERRMGKGAKLKYRTN
complement(458443..458658)         phage associated protein; NgFC428_00470                                              N/A                 NeisseriagonorrhoeaeMSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
complement(458710..459201)         PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NgFC428_00471; phage(gi374531698)     2.27e-19            NeisseriagonorrhoeaeMTALTLYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEEHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGRQVAGAKIEGRKNLQIR
complement(459198..459380)         putative phage associated protein; NgFC428_00472                                     N/A                 NeisseriagonorrhoeaeMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
complement(459520..460206)         PHAGE_Pseudo_RIO_1_NC_021300: putative ssDNA binding protein; NgFC428_00473; phage(gi508178031)     1.89e-10            NeisseriagonorrhoeaeMSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKHPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGQTEYPQGNAAPAEDIEDDIPFN
complement(460275..460436)         phage associated protein; NgFC428_00474                                              N/A                 NeisseriagonorrhoeaeMSFHPETAYNGGGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
complement(460433..460711)         phage associated protein; NgFC428_00475                                              N/A                 NeisseriagonorrhoeaeMKTRNIAFKFAVLAAVLAAGYAFGFAKGGGSRTAKGKPAGIAAMRMALAQKQAEVAELSAEIWLEERHLNADEEEAGCRRVHGDAEVPGGKE
complement(460864..461196)         phage associated protein; NgFC428_00476                                              N/A                 NeisseriagonorrhoeaeMKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESGLIEIAKKSAREFVRDADGEPYAQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
complement(461337..461624)         hypothetical protein; NgFC428_00477                                                  N/A                 NeisseriagonorrhoeaeMSYLDQPLKHGYGNGNGSGNGDGYGNGYGKGYGSGYGNGKGDGSGSGYGNGKGDGNGSGNGDGDGNGNGSGNGSGNGDGDGNGNGSGNGSGYGNG
complement(461621..462097)         PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; NgFC428_00478; phage(gi197085698)     1.05e-32            NeisseriagonorrhoeaeMEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
complement(462130..462330)         hypothetical protein; NgFC428_00479                                                  N/A                 NeisseriagonorrhoeaeMNELISRINRFGTRAKDGQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
complement(462528..462941)         hypothetical protein; NgFC428_00480                                                  N/A                 NeisseriagonorrhoeaeMIHLNVHYCDEIIRHAENDKYSLIGIFPDICHIPTPQAILGRLCLSVSFSAEGMDIQTMKTGQIFLEIVRNDDVISALEIPSYDGSDTEENVSFMLHQTISGLPVSDNDRIYVRMTTHNHILSESRPLSFSWLPYHS
complement(462938..463438)         PHAGE_Clostr_PhiS63_NC_017978: gp25; NgFC428_00481; phage(gi388570654)               3.37e-06            NeisseriagonorrhoeaeMKNCTPTNGTWFKMGATLTVAVAACTVSTPTSAIPVTHIKCLRINGQIKCVKPISPNTTPAAEHIEHVRKNPRRKAAMDRAAARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYMEQA
complement(463416..463853)         hypothetical protein; NgFC428_00482                                                  N/A                 NeisseriagonorrhoeaeMELTVHFNAEQDLDRLFEKDEEAVGYLENVIAMIQADSAIFDGLYKNRYFREYGEPIGPIDLEVKPILSLWGKDIKVLRVRFDSEEAAGYRIIYAPCHEKQPNGTYIRRIDILAVVNKKTDEFDYQAEHPITKRIIKDYEELYSN
complement(463966..464628)         PHAGE_Salmon_ST160_NC_014900: C2; NgFC428_00483; phage(gi318065925)                  8.51e-22            NeisseriagonorrhoeaeMFSGEQLGQAISEAIKRKNVSQKEVADHFGVKQPSVSGWIKNGRIDKKHLDKLIDYFSDVVTPSHFGIETFRVLKSNEQSSIRFPRLNAEATCGAGTINDHYIEVVDYVTVAAAWAREKLGGNLNKIQVITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLKAKRLQSTVGGGLMIISDNSSYRTETVRGEDLNAVRIIGRIRGAWRLSQF
464757..464987                     PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; NgFC428_00484; phage(gi100049)     3.86e-10            NeisseriagonorrhoeaeMSIQKAVDYFGNESRLARAIGVKQPTVWAWNKKGTPPPIIRCVQIEKLTGGAVNRKDLRPDDWHLIWPELAGDQPK
465067..465222                     phage associated protein; NgFC428_00485                                              N/A                 NeisseriagonorrhoeaeMKKQDRNRLSKKDRRLIKKAMLKAAAKGCDEVYKIAPGLKDGFELLGKQPD
complement(465199..465387)         phage associated protein; NgFC428_00486                                              N/A                 NeisseriagonorrhoeaeMPSDLSFILAKELIRSGSIRLSGSTAKGQAGELAVFIRTLHQKPEESEPNTDDEYLIGLLSK
465560..465787                     PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; NgFC428_00487; phage(gi970580066)     7.65e-05            NeisseriagonorrhoeaeMNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTQLAARITDLEGRGFVFAKPKYKVGNCKNPVAHYSIAKSGIEP
465784..465921                     Uncharacterised protein; NgFC428_00488                                               N/A                 NeisseriagonorrhoeaeMSREQRIRGARLPVSAYMQAEGAGKAREALDGRVEKVKGVDDEAV
465905..466969                     PHAGE_Haemop_Aaphi23_NC_004827: putative DNA replication protein O; NgFC428_00489; phage(gi31544014)     1.74e-37            NeisseriagonorrhoeaeMMKPSESLRAAGRPIAYYPKLAKPLGGVNAAILFGHFFYWNDKTQYESGIYRTAEEIEIETGLSVQEQRTARAKLRERGVLIETEKRIEHRIYYKLNLDAFDDLMLQHSGGGESTAPKCNINSPELQNQHSGGGESTAPKCNINSPELQNQHSGSEESTAVIRTEDLTEDLAVYTPLPPNAGNGKGGLNADAFVSADAETCGRETGEPTSPKAESDSNGNGGLSGKPKNANVPRRRKTHGVPLQEIADLYNEVLGGRLPSVQVLNDTRKRAIANRWCEMLGTAAPNGKVRFGDKETGLAWFAGFFRKVAMNPFWMGENQTGFAVGFDWIFKAGNFVKILEWHPPKTNQAARGRA
466966..468327                     PHAGE_Marino_P12026_NC_018269: replicative DNA helicase; NgFC428_00490; phage(gi399528354)     1.49e-70            NeisseriagonorrhoeaeMNRIEETEAVQSLASVGAEQNILGGILIEPTAIARCAILTPEKFYQAQHRIIFRALLDMAAANEPIDIITLNDKLEARGEAENAGGLAYLIDLNQNTPSAKNISRYVGIVNDRFVERGLLKASAAIEKIAVSKDGGTVAEKLSKAADELAAAGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGMTGGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNIPMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGLDLLVVDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIRGSGAIEQDANIIIMPHRESYYDGNENPSIAELIIAKNRDGETGTVVCGWKGQFMKFEEEPDLAWQAPKHDEYDPYSV
468344..468574                     putative phage associated protein; NgFC428_00491                                     N/A                 NeisseriagonorrhoeaeMRETCFYCNHADFKTNTGTPVRGFAKCAKARNAEEKATYYPRTNPCAAGAFQTASGAAVAKRTAVLGEYPPAMRRI
468666..469160                     PHAGE_Mycoba_Gengar_NC_031035: hypothetical protein; NgFC428_00492; phage(gi100045)     2.41e-08            NeisseriagonorrhoeaeMTVRNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRADAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAGGGI
469337..469486                     phage associated protein; NgFC428_00493                                              N/A                 NeisseriagonorrhoeaeMDTLLSIITALSFAGAATLAVWLLVEAADAVLRRKRDGKGEDDFDGFGY
469515..469796                     putative phage associated protein; NgFC428_00494                                     N/A                 NeisseriagonorrhoeaeMAEEMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
469787..470167                     PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NgFC428_00495; phage(gi148609431)     5.01e-08            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYKETVRRIAQGAGAMPSEGFVAVRLRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVAGGGLAVEVGELDEK
470434..470841                     phage associated protein; NgFC428_00496                                              N/A                 NeisseriagonorrhoeaeMNQQEFEFMNDLARAFERRYRDTRSLNRCLSIEGRYMGEEACPHKPEIGLRYGEDAMFLTLQAWAKVDAPQQEAVRISFGIGAKSQAAYEERLQAEIRRRGEQLLHLQTDLGLAAWYRAIRQAAGDDFDLLFEKV
470932..472092                     Uncharacterized conserved protein; NgFC428_00497                                     N/A                 NeisseriagonorrhoeaeMNAAAVSAVFKERIASHAEHVKKVAHICTTEETTKQALILPLLDILGFSAFDPNKVRAEYQADFPGAKSGERVDYALFCNGAPVMFIEAKSYTENLSNHCPQLSRYFNATPEIAICAITNGREWRFFTDLSNKNIMDSEPFLTVDVTMLNENDMAQLYQFRHDKFQPDALRSLAEESIYLTAFTESITESLKEVDLDFVRYVAGRANIQRQFTQRYLESIRHIVKQAVQNTVSSMVVSGLSAPKVQEEAAPVEKEQEDPTAPIIDPENNKIVTTYSERRLFDLVKSILPDDASIEAKDTESYFGVLVDGKSNRWILRYFDNKQRPSVIFPIELEESDISNIERCGLEVSGNQVIIDTPENLLRVVWLVIDSYRFCCDDENFKRKPK
472373..473242                     PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NgFC428_00498; phage(gi31544021)     7.36e-58            NeisseriagonorrhoeaeMNVIQSFNFNTTSPVRAFEKDGLTWFVAADVCKALEIQNPTQALEKLDDDERSMFNIGRSEIHGGGGNVNIINESGLYILILRSRKAMEQGSTAWKFRKWVTSEVLPTIRKTGGYQVGQKTTADDRTGLRRAVAALVGRKGIDYSSAYSMVHQRFNVESVEDIPAGKLPEAVAYVHALTLHTGLTGEVLDREPLPAPQPALPISGNALYDLAVAVSYGARAIQMGRDVSLPLKQLGCRQAVTMWTVWAETRSRLKAAANALEALSAHADAEHAEKIRPILPEIRNLSAV
473535..473984                     PHAGE_Entero_Sf101_NC_027398: terminase small subunit; NgFC428_00499; phage(gi849122263)     2.18e-31            NeisseriagonorrhoeaeMSGTKRKLGRPTDYTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYARAREKQADYFAEEIIEIADSAQAESAAVSKAKLQIDARKWAASKIAPKKYGDKTELDVKSGDGSMRAAVRLDAEEYRKIAEDVLRRV
474046..475467                     PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NgFC428_00500; phage(gi423262000)     0.0                 NeisseriagonorrhoeaeMALGQFDDVETSVIRSLSSASLYMFTRRMFYQRRGYVWQRANHHAPICNALERVFNGETKRLIINIPPRYSKTEIAVVNFIAWAMGRVPDCEFIHASYSAALAVNNSVQIRNLVQHEEYRAIFPDLALAGESGHHWKTTAGGVMYATGAGGTITGFGAGRHREGFGGCIIIDDPHKADEARSEVRRQNVIDWFQNTVESRKNSPDTPIILIMQRLHEKDLAGWLLDGGNGEEWEHLCLPAIQEDGTALWPEKHDIETLRRMEQAAPYVFAGQYLQKPAPPDGGTFKPDNLQFVKALPAGNIRWVRAWDLASTANGGDYTAGGRLGVTEDGRYIIANVVRGRYGADERDRILRNTAQKDGVKTKISIPQDPGQAGKSQTLYLTRQLAGFSVSAGPESGDKVTRAGPFAAQVNIGNVMVLDDGTWDTDALIAEMRMFPNGRHDDQIDCLGRAFGELLDTRTGMIDFLRSQVEAVK
475464..477611                     PHAGE_Bacill_Riggi_NC_022765: minor head protein; NgFC428_00501; phage(gi568190979)     3.41e-11            NeisseriagonorrhoeaeMSKKTPLSQGFIARVAAGVRYAFTGNADGWFDAGEPPAPAAQQAEGRRFDYEPFYNVGHSKPREREAVGFAQLRALADNYDVLRLVIEARKDQMECLKWTIQKRDVESTEDDESQRKDRKVDEAVAFFRSPDKEHTWADWLRILLEDLFVIDAPCIYPRKTLGGGLYALEVMDGATIKRVLDNTGRMPLPPDTAYQQILHGMAAVDYTADELIYRSRNNRSYKVYGYSPVEQIIMTVNIALKRQVHALEYYTAGSVPDALVGVPETWSADDIRRFQEYWDLLLSGETAQRRKMRFVPGELSRNFRETKQPPLKDVYDEWLARVVCFAFSVEPTPFVAQVNRSVAETSREQSLSDGMGSLKNWVKALIDDVLARYMDMAAYEFVWKGEESLNPKEQAEIYAIYKNAGILTADEIRAELGKEPLPGQGQPEPDKQDGRKPEEPPNQGAEKLGKSESPMSEDESAALIEAYLLTRIDGLAEQIAALIEGAAVDWQAGDLAAELSRAAGVVANGLDFGDWSGLSDVVEPIIRRVAEDGAVAALLRVMPEPAAGMVTNIRSRAVKWAHERAAEMVGMKRAGGGLVRNPAAEWQITEGTREMIRAQVAEAMRNGDSVQELAGRLKESHAFGNARARTIARTETAMADGMGNLIGWEGTGLVAGKQWITAKDDKVSDVCNANGGMGVIGLHEPFSHGALTIPGHPNCRCAVVPVLAGDMPES
477679..478836                     PHAGE_Strept_Jay2Jay_NC_029098: capsid maturation protease; NgFC428_00502; phage(gi985760259)     7.30e-08            NeisseriagonorrhoeaeMTKLYAQIAKTEAQDDGTVKVWGYASSEAVDSDGEVVAAEAMKAAIPDYMKFGAVREMHGSNAAGTAIEINVEDDGRTFFGAHIVDPVAVTKVKTGVYKGFSIGGRVTARDDLNKSQITGLKLTEISLVDRPANPDAVFTCFKADKPKDEAGAADKDGKPSDKPTEEEDENPKDGDKGPKTEDKGDKDAGKKDEAGKSASVNLSESEIAALKAVLAKADKPKGGTAAKSMYQVKSPADVLMSLKWLVEDASYDNIDEAVTAQIKESAAGLAESLKALAASEADKPADGLAAKAGKSGDLAKAESADELAKAQDALKKSNDALAKAQAEIESLKKQAVPPKGSTKAISKAEDNGEDPLKGFQPIVKNDGTLDDVATLIKAKQTGRL
478877..480376                     PHAGE_Thermo_THSA_485A_NC_018264: hypothetical protein; NgFC428_00503; phage(gi397912636)     2.98e-32            NeisseriagonorrhoeaeMNVNQLTQETIELMKSAQAGGGPPDKGFTQPAGFTAGLQTYDLSAPSQKLYPVLTPLRNRIPRVGGGRTIGSNWKAVTNINVGNQRAGIGEGRRGGVINHETVERNAQFRAIGLENQVTFEADYAARGFEDVKALAVAQTLQATMVAEEMILLGGNTSLKAGVTPTPTAVVSADAAGKISVSTLSVICVALGLQAYWDVAGANNGATGQSPNIKTAQVPAKITRRNADGTTDTFGGGSARKSAAASVSGIEAGKKVTAVIPAVRGAVAYAWYWGAAGSEKLGAVTTAAKVEISADAEGTQTAASLPSEDNSTSILEFDGLLTQIALPDSGAFWSDNKGGGLTSDNAGGVYEFEEAFAHFFTRYRLSPDTVYVNARDLAALTKLIIGNSGAPLIKLNVDVNNTANIRAGVVVGSYMNKITGDDLNIVVHPNLPAGTYLFYSSRLPAYVQGVGNLLQVRTRQEYYQIEWPLRTRMYEYGVYADEVLQGMFMPAFGMITNVG
480428..480739                     putative phage associated protein; NgFC428_00504                                     N/A                 NeisseriagonorrhoeaeMTVKLKAPEGFTDVSFGSQSYAADENGIVEVPSEAAEFLYQFGFGNVASEPAEGPEKAKRGRKPKTGQPAGQSEPAEAAEPAEAEAAEPAEAEAEPAEAEKAE
480742..481272                     PHAGE_Strept_phiSASD1_NC_014229: gp29; NgFC428_00505; phage(gi298103494)             5.78e-07            NeisseriagonorrhoeaeMAAPVSLEEFKQRIGVEHDRRDDFFLSVIDGVSAAAEAYIGRSLLAADYVGRYDGNGKDRIVLDNYPVLSVSSVKINGADAGGWEFDNWLLMRPEGFARGLKNVEVSYRAGYERMPADIREAVMIIAVQRVNEIEGKGVRSKTLAGETVAFSTFGNSGGMPPSAFAILNEYKRKGV
481272..481754                     PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; NgFC428_00506; phage(gi481019160)     3.58e-07            NeisseriagonorrhoeaeMLKMEFIGGGILAAVFKAYAADVQDAVVKSVGRSALRLQSEVVLNRLSGRVLRVRTGNLRRSVHQRVNVSGNVVSGEVDTNVRYGIAHEYGFAGSVNVKASLRQVRQAFGKPLKPPRYVRVRAHTRDVKLPERSFLRSALRDLTPKFADDLQKSIGKVLK
481751..482179                     phage associated protein; NgFC428_00507                                              N/A                 NeisseriagonorrhoeaeMNREAVYSALWAKLDALDGFVTKSRKLVHWNDVKRYDQPALFMAQGDMQALTLTGRETKWILRADVYLYVQTAGQPPAPVMNPLIDAVCNAVNAVHPVTGKTDLTADGADIEYCRVEGTVETDEGTLGEQAVCIIPIVICAA
482205..482978                     phage associated protein; NgFC428_00508                                              N/A                 NeisseriagonorrhoeaeMQLTFGSGEVFAQMITDAYGNRVQNATPVRIMGLQEMSVDLSAELKEFYGQNRYPLAVAQGKVKVSGKMKGALINGLTLNTLFFGTEYATGTMKALWAETTGKVLDGDNYSYLQAAAPGGGKFAEDAGVMGQDGTAYIKVASSPKQGQYTVSDAGVYAFNSSDKGKTVYPSFTYTQTMPPAKKIELTNMATGNTPTFKMRYLTQFKGKKALLELESVTSGKLGLFSTKNDDFSVPEIDFTASTDEAGFKIGTLWIQE
483039..483368                     phage associated protein; NgFC428_00509                                              N/A                 NeisseriagonorrhoeaeMTVRIKGVTVELNGADYVIPPIALGALEQLQERIGSFDGNAADAGQISTVIDCAHAALKRNYPDLTREEAADLIDIGNMNEVFAAVMDVSGLKRREQEAAQAGEARAAD
483380..483646                     phage associated protein; NgFC428_00510                                              N/A                 NeisseriagonorrhoeaeMIAHVCASTGWTWDYVADNLDLPRIKHLNEYWREHPPVHILAASYMGVKPSSGSVQSEADEAEAVGMLGGGELSEDEFDALLKAKGII
483646..484245                     PHAGE_Caulob_rogue_NC_019408: hypothetical protein; NgFC428_00511; phage(gi414088956)     6.40e-05            NeisseriagonorrhoeaeMGNAVFPEFPGLKWGRKKTAVWSTGTQKSASGREFRTAYYTYPQWRFSLSFEVLRTKASVNELEKLAGFFNARKGSFESFLYEDPADNAVTDQPVGNTVQGVARYQLVRSMGGFIEPVSAVKERPAVKVGGTALAYGRDYTVTDKGVLVFNTPQPPGRPITWTGGFYFRVRFTSDTVDFENVLGSLWAAKKIEFTSVKL
484242..485096                     PHAGE_Caulob_magneto_NC_019407: putative tail protein; NgFC428_00512; phage(gi414088603)     5.84e-20            NeisseriagonorrhoeaeMKAATKELIDLLHGGDEFQMADLYTITLSGGRVLRHTGADMPVVWDGQAYGAHELVIKRGATRTAVGLEVDSNTLQISAAPDYRLEGLQWAEAALGGVLDGARVRIDRVFFDAGLRPVGAVNIFSGRVSDVSGGRSSVKVDVKSDIELLNVSSPRNIYQAGCMRTLYDDGCKVNREKFTVNGRVTENSRTGTVLKHNLTQPDGWFSQGVIKFAGGRNAGLSRTVKAHGGNTFELALRLPYPPQAGDAFKVYPGCDKRRDTCKDKFDNIVHFRGFPFIPSADTVV
485098..485529                     PHAGE_Roseob_1_NC_015466: phage cell wall peptidase; NgFC428_00513; phage(gi331028137)     1.85e-13            NeisseriagonorrhoeaeMPSETDLRARIVEEARSWLGTPYHHHAMVKGAGVDCAMLLVAVYGAVGLLPEGFDPRPYPQDWHLHRDCERYLGFVTQFCRETESPQAGDIAVWRFGRSFSHGGILAGGGKVIHSYIGRGVVSDDIGQAELIGRGVRFFTFSF
complement(485557..486003)         PHAGE_Pseudo_phiKZ_NC_004629: ORF114; NgFC428_00514; phage(gi29135050)               4.55e-17            NeisseriagonorrhoeaeMKPLNFSGGSLDCLRQFPENAKQAAGYQLQEKPENRGRRFGIGGKTLQQIDSGKEIMESQTFASVFDALCDTPAEAANMRLRAGLMMHIADTVRENGWTQKQAAEHCGLTRPRINDLLNGKIDKFSLDALVNINAGLGQCISLSFAPA
486075..490220                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: central tail hub; NgFC428_00515; phage(gi658311483)     4.29e-11            NeisseriagonorrhoeaeMGGKSSTVTSAEERILSLQVQRSSQGLTLPVIYGRTRVAGNLIWYGDFVTIEHKTTTRRGGKGGGGVKQVGISYTYEAAVMLALCEGEIQGVGRVWRDKEKFDSPAQLRLTLMRGGDEQPLWTHLQQAKHQGQALNYSGTAYLCSPNYELTKSAQIYQHNFEVIGKSGYSGNIPDANPREIVLDLLTNQRYGCGFPSQNIGDTDRYSNYCRAVGIFLSPAYTEQGEAQRNISELLEQTNSAAVFSQGRLKIIPYGDGSHSGNGAVYVADNKAAYDLTDDDFIVSGAQDPVKAGRKTNADAFNQIQVEYLDRDNDYNVAIAEAKDQANIEQYGLRPKDAVRMHGICDAKVAQKVAQQLLQRALYVRNEYEFKLGWKYCLLEPMDIVTLTDAGLGLNKTPVRITEIEEDGEGVLSVKAEDCPAGVYTVSEYPTQPSSGYSADYNVSPGNAHVPVIFEAPLQLTGGEPQIWLATAGGGMWGGAEVWVSADGDSYTRVGAVNRKARFGALTADLPDGAVFDRTNTLGVEISAGQLTGGTEQDSRDLLTLCYVDGEFLAYADAELKGVGRYTLGNLTRGAYGSAVNAHAAGSRFARIDEALFKYAVPRNWIGRTVWVKLVSYNVFGGGIQDLAEVPAYSYTIEGAPLGQIQNLRLTSSWAYGKEAVIAWDKLDGADTYDVEIYAGGSRRRLRAVDGIVDNSYTYTQADMKADGGQVRGIVFKVRGRAVTGKTGNWAQIAAQNPQLQALQGISIDSGLRQAFFTCQKPDEEDFAGIIVWVCENAACPAADANKAYDGAETFITIAKCGGKPLEKGKTYYLRAAGYDSFGKDNLKISGSISFTVYDVSATDLSESSLNKALRDKINLIDGNGAGSVNERVEAVRSTADGNAAAVQTHARSINGLEAQYTVKVDANGKVAGFGLATTPKNGTPESKFIVNADRFGIGAAGKADVFPFVVDTQKNRVGINGELVVNGKAVVDKLNAGDIHGGKIAADTLDANRLKAGSVTAREIGAAAVTADKIGANAVTADKIQVADLSAVSSNLGSITGGSLNIGGGNFTVSSDGILTADNAVIRGRIEADSGYFNGTVRASSVEGDVLRAHRLRWTEGNVWVLDLDKDPLPRVLIPNFYVVSETFGNNRVQAKLLLNGGVLAPREVRETENYTNYIWRGRTFGRYEDLPPRARGVGDYTEQSGSRYRTRLEYQIQVIPAGKPVSLKLSLASHESVFSPFVSVSYLAQSDYEYKQLLGRMVWRTFAESFRYDSKKQVYLGGDRRVHDYQNQMYKHWNAYGGLLQLPDDIYGISFEYRPFTNADWSTMLAFDRSDKFVVVKKYRGHAPQQYSLFQEEFNTAVPKSNLLFFVEHWWQYIELRNIRVLIPESRENEVWQVG
490332..490637                     phage associated protein; NgFC428_00516                                              N/A                 NeisseriagonorrhoeaeMIEDKKIVALNFAVEDGMTGASAAYHVVEHIGADYRNGYVTATLNGYVSENAFKSGKRYLLARTLDFQETDITAPDPGWVYRKALEGAAGIPKDAQPVYAE
490708..491178                     putative phage associated protein; NgFC428_00517                                     N/A                 NeisseriagonorrhoeaeMLRVLLNRRFLPAGFQAWLFGTATRVLEAVSGLGLSGYAAVFALAPDEIYAWRIYYKFQDIPEAWTVGVLAAAGLLQTALLFARGVRACVASAYLLLFSGFVWFLVSVAFWGAYPPLNTGMVVPPLLAFFCALAGNNALRFLFSAQKSRGLADEGS
491179..491511                     phage associated protein; NgFC428_00518                                              N/A                 NeisseriagonorrhoeaeMGFLQFGLLFAAAGGVLGAVWASLQERGRPVQAVLEAFISAIAAAAAAERFVPLDQAWTCAAAGVFAGMMTGHALDTVRALAPKVLRGYLGGLAEKLTGVKDGGSSDGKD
491706..491825                     Uncharacterised protein; NgFC428_00519                                               N/A                 NeisseriagonorrhoeaeMLLLLEKYRSVRLFLRAVLCAAPLTALIWKPADILNALK
complement(491880..492227)         PHAGE_Strept_EJ_1_NC_005294: transcriptional regulator; NgFC428_00520; phage(gi39653708)     1.81e-11            NeisseriagonorrhoeaeMYIPERGDIFHLAFDPAAGTEMKGGHYAIALSPRAYNRATGLVYACPISQGRAAAARSGGMISTLLGAGTATQGNVHCHRMKALDWKIRRAAFRETVPDYVIEDVLARIGAVLFD
complement(492227..492463)         pemI-like protein; NgFC428_00521                                                     N/A                 NeisseriagonorrhoeaeMLRLQKWGNSAAVRLPARLLTALNAKIGDALETEIRNGELLIRPVKRYRLSDLLAETEAAPPRAEGWEEMPDVGQEGV
492670..493209                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: endolysin; NgFC428_00522; phage(gi658311460)     1.58e-63            NeisseriagonorrhoeaeMKELKWIEEARKYLGAHEKVNGKSNPVLLAMLQEMGNFNQEQKAWWKETDTPWCGLFVGHCLGKAGRAVIRDWYRAKAWSMSGLTKLEAPAYGCIAVKPRRGGGHVFFVVGKDAEGRILGLGGNQGNMVSIIPFDPADIDGYFWPSKLIGGKAVPSSPAEGRYRLTAAAATGAQGAGEA
493209..493367                     putative phage associated protein; NgFC428_00523                                     N/A                 NeisseriagonorrhoeaeMMNPTEFLKARIAEWEAKSKEAGGNADFKAFEFAESEIKNYKAMLKTYERPD
493351..493692                     PHAGE_Entero_vB_KleM_RaK2_NC_019526: hypothetical protein; NgFC428_00524; phage(gi422936900)     2.82e-06            NeisseriagonorrhoeaeMNGLIKNPKLIAVSVCAVFVAGAWQYDRAAQYRRGYGAAMLEVSERLKAAAVEHAEHARKSSAAYQAQKAAREEKERVRYVQTLKIIEKPVYRNACFDADGVRELNAAVDDGG
493631..493849                     PHAGE_Nitrin_1M3_16_NC_024217: hypothetical protein; NgFC428_00525; phage(gi643655216)     2.81e-06            NeisseriagonorrhoeaeMPVLMLTACANSTPPLTTAVKPPADLVRPCPKLPHLEGNTGADVLPWALKAAGMYNDCRARHGALVRALGAD
494190..494339                     phage associated protein; NgFC428_00526                                              N/A                 NeisseriagonorrhoeaeMNAEGFCEKQTACRPDGRRNAGDRADLKAFEFAGRELANYREMLKRYAV
494369..497413                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: tape measure protein; NgFC428_00527; phage(gi658311478)     2.93e-49            NeisseriagonorrhoeaeMSDLEAKVRITVENHTKQGFDSAAADADKAAEKMRSSGDNAAKGFKAAIDSMHETMRNLHADVKAGFEAAGNQAQQASEKVRAEVGKIGSGLSGLTKLLAGLATADFAKSVLDTADAMQSINSQVRQVTSSETEYLAVQQQLLDTANRTCASLESTANLYVSTSRALKDYGYTQQEILKFTEATNNAMTIGGVGARQQAAALFQLSQALGSGVLQGDEFKSISESAPILLDTIAEYMGKSRAEIKKLGSEGKLTADVIFKAISGASEKFGEQAAKMPVTMGQALTVFSNNWQSMVSKLLNDSGTMSGIAAVIKLIADNLNLVVPIVAGFAVAVAAAVAPTLALNLALLANPFGIIAVAIGTVVGLIAKFGDEIDVFGGGWSNLSDVIRAVWQIITETVGEAVGTVKSWFDGLTGRLNEGAGGWPSLFGRVMSVISSAIGAYVNVYINIFATGWMLIKEAANDMPQFFANLGKAIGNVFISAIERMINKAVGMINSMIDFANKAASMAGISGIGKLNKVRMGRMDDGGLGERIHDSLTKDRAGAMANAVRERAADIHEADALKGRGGGGHAKTARKKPGANQGGGKGGKSRSGGPGAAKDPMQAWEGEIKARKLAHREMQRETLAHQEWDLAREAEYWRAKLATVDANGKTGVKIREKILTLEDQLSKQSTEAKMNQAAEWEKLDKHKLEMEKDAADQALADGRISQLERLDLEIEFENRRYQIAYDALQERIALAEQDPAYSQAAIGKLKAQMGELGRGHERTQAKNEGKRENQRRKDAPNVMEMLQDGGRNVWQEAQQQMGQAFTAMLARAQNFRQAMNGFFKSMGQTFIQEMVTKPLTGLMRRMVEESAIYKMIFGTKETLETAAAAKTAATKATETTAVVSSNAVQAASGAAASQAHIPYVGPILAVAAMAAMMSAVMGLMGGGGSQTTTTTTRIPSAAGGWDIPAGINPLTQLHENEMVLPAEHAQTIREMADQQGGGSTVIINSTGGDFIHKNDLAKLLKQMKRDFKFV
complement(497473..497952)         phage associated protein; NgFC428_00528                                              N/A                 NeisseriagonorrhoeaeMTDNLIQIATPILTVIGVFVAAYGIMRNTENAKKRATIDMIMAERNNAALQEAITIVNGLAKTDGCILATYTSDTPDKKKDREAILTVLNQREFVCAGVLGGALHEKMYKDFEYSMLLRDWDNLSSFIFEIRRIRSAPTAFQEFEAVARKWKKKPLKTK
498158..498169                     attR                                                                                 N/A                 AAAAATGCCGTC
complement(498294..499283)         PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; NgFC428_00529; phage(gi109289985)        2.46e-101           NeisseriagonorrhoeaeMATITQRNGKWRVQIRMKGVSRSATFERASDAKAWAARIESQIMDGIQGNAPRNTIFADLIRRYLSEVTPSKRGAREESYRIGRALKTPLAKVRLADLRPQDFADWRDQRLQEVSPTSVGRELTTLSAVCEHAMKEWGLLRENPVRKISKPKKSRARTRRPTEQEIADICAALLYRPNEKPKMAVQRVAVAVLFAIETAMRAGEICGLKWADVNMRRRIAHLPITKNGDSRDVPLSLRAAELIEQLRGIDDTWVFSLDAKSLDVLFRRARDNCGIQGLHFHDTRREALTRLSKKVPVEVLAKISGHRDLRILLNVYYRPDMADIAKMLD
499972..501006                     PHAGE_Prochl_P_SSM2_NC_006883: phosphoribosylaminoimidazole synthetase; NgFC428_00530; phage(gi61806048)     5.65e-82            NeisseriagonorrhoeaeMSTSLSYRDAGVGIDAGDQLVEKIKPFAKRTMRPEVLGDLGGFGALVEIGKKYQNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDILVQGAEPLFFLDYFACGKLDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVGVVEKENVITGRGIGAGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLREAVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPKNTVAQIDAESWELPKLFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVRSFLSGQGETVYRLGCIRERQGNEHQTQVA
506512..506523                     attR                                                                                 N/A                 TGCCGTCTGAAA

#### region 2 ####
722125..722136                     attL                                                                                 N/A                 TCAGACGGCATT
722305..723318                     putative phage associated protein; NgFC428_00728                                     N/A                 NeisseriagonorrhoeaeMKKNLPALALASMLILSGCDRLGIGNPFSGKEISCGSEETKEILVKLVRDNVEGETVKTFDDDAFKDQAFADIGISHIRRMVERLGITVDEVRTTEKTDTSSKLKCEAALKLDVPDDVVDYAVAANQSIGNSYKKTPDFFEPYYRKEGAYYVKTISYSVQPTDDKSKIFAELSQAHDIIHPLSELVSMALIKEPLDKAKQRNEKLEAAEATAQEAREAEEAAAQEALGREQEAARVSEWEERYKLSRSEFEQFWKGLPQTVQNKLQASQKTWKSGMDKICANNAKAEGETPNGIKVSELACKTAETEARLEELHNRKKALIDEMVREEDKKELPKRL
723363..723503                     phage associated protein; NgFC428_00729                                              N/A                 NeisseriagonorrhoeaeMPQYRNWQNGLGAKCADGDEYGVAQSDCRTREINAKTKEIQGYLID
723608..723802                     putative phage associated protein; NgFC428_00730                                     N/A                 NeisseriagonorrhoeaeMIYYPAVLFQNPDQSNWGVIIPDLPGCILSAIRLPTRLPMPKPPQCSISKGFCRKTCRFPRRKA
723742..723990                     PHAGE_Haemop_HP2_NC_003315: hypothetical protein; NgFC428_00731; phage(gi17981828)     6.09e-07            NeisseriagonorrhoeaeMFHLEGLLQENLPIPEAQSIEVNRDNPDYADAVLWTMVEADDAALTGQVRFNVSWPQHILNRVDACTAARHETRAVFWRKPP
complement(724450..725700)         PHAGE_Haemop_HP2_NC_003315: tail fibers; NgFC428_00732; phage(gi17981847)            5.83e-68            NeisseriagonorrhoeaeMEKTQFGRHPRRRDRVLSQSRPKPRRLSQSRRHDLCTKHLLDLYRALGNTNKLPDLTRTDIGITAWFPSDQIQTGWLAFDDIRERVTESAYPELYRLLTEKYGRIQNVPQAEDRFIRNAGNGLAVGTKQEDEIKRHVHKVFSHWANHPDAAAVGYEDRNERQRSALVSTWTDGDLNDNGFLTPRLDSKMATGGAENRPKALVLKLCIKAADTLGEAVFRIKSHGETANAGALDASRLAQGLQEKADRDHTHTTAQIQGLDEKISAAVAAQFTRQTIGGVDIVRFPDGTMIQTGSYRFARGGSPIGNEVVFPIAFADGNVKCFVSERHSGRVNGERQHNWLFIRAKNHAAAIITNWYESSCDWMAIGKSASGNAASPTPIVPEIPEIDEEPQRESGRSSTGLRNPRRHRGLDFPVGS
complement(726132..726701)         PHAGE_Haemop_HP2_NC_003315: tail fibers; NgFC428_00733; phage(gi17981847)            9.67e-18            NeisseriagonorrhoeaeMANATEQNQFDQAVRLIEPGDSVVVGPGAPVNQPLQALANRTLLLKNQTEALQTASDTKAAASTAVNAGDGLTGGGSLAQSRTIALGAPGQITATSQNTVPKNGHTHAIDTARTDRAGIVRLDNAISEAEDTAATPKAVKTALDQARAAAATADLKVSLSDNQTVTGQKTFTAETQFQSGIRLSANPTH
complement(727120..728175)         PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; NgFC428_00734; phage(gi937533298)     2.33e-48            NeisseriagonorrhoeaeMGNSRLSQLPAPAAIEETDFEGIFARKKAALTALCPESIRETVAQTLELESEPLTIDLQQQAYQELLVRNRINEAVKANLLAYAQGSDLDHIAAQYGLSRKTIRAADPDANPPVAAEYETDDAFRARVQAHPEKYAAGPRTAYEAHAIDAHPQITHARAVRRAIGTVEVYIKTQSGTPDETILTAAREYLPAETRRPLCDNVQVTAAQPKDAAVEYSAEYHPAANIQAERQTACEALDNLWRQNAHIGASVALSKIIGALDTPGVKKNHTAQPRRRHRMRQRRIHPNHVHARARINEQHRPREQQPPATRTGKADRTRNCRRLPPTRPRIFTLSRLRKKHRHGRGLGLCRN
complement(728196..728522)         PHAGE_Pseudo_phiCTX_NC_003278: baseplate wedge subunit; NgFC428_00735; phage(gi17313236)     2.18e-21            NeisseriagonorrhoeaeMTDAENGRGQDTLAHIAQSIRNILFTRIGTRLMREEYGSFIPDLIDMPAGHAAIALIHQAAVTALARWKPRITVRRIQADTADLAAGKIKLTLDVTLADGGERTYRIK
complement(728519..728713)         PHAGE_Escher_pro483_NC_028943: baseplate assembly protein V; NgFC428_00736; phage(gi971758527)     3.92e-05            NeisseriagonorrhoeaeMELKAVTSLTIDTPQTTITGHLTVNQTTTAQGLLTYQNGMNGQGGSLSEHTHPDDSGGTTEKPQ
complement(728813..729019)         Uncharacterised protein; NgFC428_00737                                               N/A                 NeisseriagonorrhoeaeMTDRQIDNLIKPATIADTDPASAHNTAALPPTGCPISSPLQAACQYGASQVSAKPAPSYPLPANPRTA
complement(729204..729443)         PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; NgFC428_00738; phage(gi971741518)     6.44e-13            NeisseriagonorrhoeaeMRNKINRNDMELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPDTETRRADMPLEKWRQFLDWIEKTNAV
complement(729548..730123)         PROPHAGE_Neisse_MC58: IS1016C2 transposase; NgFC428_00739; phage(gi15677271)         2.97e-31            NeisseriagonorrhoeaeMKITHCKLKKEVQKEPLRSFVPEVTARSAADILGIHPDSAALFYRKIRTVANHRLALAADEVFGAPPGRAEAVSAYGVKADAVAARQEKRLSSAFRNATGGPIPLPRTMPSLKRCPLPSKRKSCRTVLFMPIARAAAASRTRAVLSVAASTVPRNLQTVGTTLTALGTFGIRQNAPCGNTTESTANLSRRS
complement(730145..730429)         phage associated protein; NgFC428_00740                                              N/A                 NeisseriagonorrhoeaeMNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDGECPGGHYRHSENGITLYDFIFFGGKPADEARFAAVLTETCRRAVKKIGSVPD
complement(730466..730729)         phage associated protein; NgFC428_00741                                              N/A                 NeisseriagonorrhoeaeMADILPSDKRRQPPKTKGNPINIIEQETKRTELRKIDAEIAKIIADAHKINAESVKIAQESRWYPMMAATGLVTAIAAVLALIFKFA
complement(730749..730997)         phage integrase; NgFC428_00742                                                       N/A                 NeisseriagonorrhoeaeMHGFRDLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYRLQERRELAEWYGRRHRQAYEAAAQNTCNKT
complement(730958..732028)         PROPHAGE_Escher_CFT073: prophage P4 integrase; NgFC428_00743; phage(gi26249391)      1.22e-48            NeisseriagonorrhoeaeMAAHNKLTQKQIEAAKADGKQSKLADGGGLYLLLHPNGSKYWRMRYRHGGCEKTLALGVYPAVSLKQARELARAARAQTAAGIDPVAEHHRTRPGSGRSLPEIARAWYGSRQGQRADNTLEGDRRSLAYLTDYYKDNTDINDITTAGVSKFIEHLNRINIPACARRTVQILAQIWDYAVQRGIITDERRNPATTARPLLNTSKPKPQPHIRPDELPDFYRALQTAHDLHPYARPLLLLAALTVPRPSALLSARWQDIDLTTRLWHIPAADMKTKHPFTVPLSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTPANPNTPCTDSATSSPTSA
complement(732237..733016)         putative ferredoxin--NADP reductase; NgFC428_00744                                   N/A                 NeisseriagonorrhoeaeMAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSRLGFYEGKGFIWRAYSVVSAEYADTLEYFAVLIQDGPMSALFAKMQQGDTILLDKNATGFLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDRLAALSEHPLVGEYGHSFRFVPVTTRAANPSGLSGKRIPELLKNNSIEQALHTKLTPESTRFMICGNPEMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF
complement(733308..733604)         Uncharacterised protein; NgFC428_00745                                               N/A                 NeisseriagonorrhoeaeMNKNIIYIFSLLITIVIFFIFEKNVISKISFDYNKKEFLISDITNFNWDHVKLYIINSDFQKIVFYDKGKIVFEELIELDRKGKVLPQYLFDSYLKNV
733916..734974                     PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; NgFC428_00746; phage(gi399528790)     8.93e-20            NeisseriagonorrhoeaeMSLRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATVKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGAGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVPPQTEDAFRLIGIGVGRLVPKNQQQDLWA
737906..737917                     attR                                                                                 N/A                 TCAGACGGCATT

#### region 3 ####
1027678..1029450                   PHAGE_Helico_phiHP33_NC_016568: DNA primase; NgFC428_01046; phage(gi371671350)       1.18e-50            NeisseriagonorrhoeaeMIPSDFIDELLAKTDIVGIIDEQVPLKKGGANYMACCPFHKEKTPSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQTLEETTAAAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPNTALVDTGMVIDNEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAETIKNHPSVPATAQVLEHMRGSPYEETIDRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQKSLQSGLNESEKKLLLSLLTAKQN
1029637..1031565                   PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NgFC428_01047; phage(gi331028036)     7.91e-37            NeisseriagonorrhoeaeMSKNQNHEEYQDDARPLTIEEQRARLRQLIIMGKERGYITYSEINDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAALSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILELIEKICKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENEDDEESEEDADEVSAANLAELKQKVIGHFAQIEKDYKKMIGCLEKHHSRHKDYLAYRDAIANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEITNLQWIEEEIAKGRVWSNALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLAELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHEVTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLDSEDSKL
complement(1031605..1031832)       putative phage associated protein; NgFC428_01048                                     N/A                 NeisseriagonorrhoeaeMRQISLTDYFCKGLGLRAQTLATIAAVRELLNSGQTPPPDYGKRCKACSLVEVCQPELLEKRDGSVGYVEALFIV
complement(1031956..1032303)       phage associated protein; NgFC428_01049                                              N/A                 NeisseriagonorrhoeaeMTAQGKALHERVDSGEPETHKGVRFERTVHVSAEKPGISGILDLVEADTKTGRLKPVEYKRGKPKPDPGDEIQLCAQGLCLEEMTGQTVSEGALWYMQTRHRVPVVFSDGLRPLQ
complement(1032275..1032439)       CRISPR-associated protein Cas4; NgFC428_01050                                        N/A                 NeisseriagonorrhoeaeMTALLTETQRENQDTRLIPLSALQHYAFCPRQCFDSQRAGVGGELFDRAGQGTA
complement(1032446..1032814)       phage associated protein; NgFC428_01051                                              N/A                 NeisseriagonorrhoeaeMKYWLVGASWGGQGHQDQFFVENGYWVLEWESSQQPDQFAKGEKIQVGDRIAIKRMKGQGSSEIKILHIGIVKGVISETNKIICVVDWIVKNLDRNVESRGCFKSIHDPYDKDEWIEKIFCL
complement(1032841..1033383)       phage associated protein; NgFC428_01052                                              N/A                 NeisseriagonorrhoeaeMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIVPPEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISANLAAKTGFSDDDLAKLWQALTLMFEHDRSAARGEMAARKLVVFKHDSALGSQPAHKLFDTVKVERVNGESGTPASGFGDYKISVVSDGLNGVSVEEYL
complement(1033549..1033908)       phage associated protein; NgFC428_01053                                              N/A                 NeisseriagonorrhoeaeMFTPSDDEQESAKIFNVLEQIGKGRPLQEIAPELSPNTRFYILGLAPNAARISVRFWLDTTFGQLAENLAHHWQDLALEPCAWKTPPSIWRLLLQTAVLGKSENIQRLGNRCLPETQNP
complement(1034041..1034907)       phage associated protein; NgFC428_01054                                              N/A                 NeisseriagonorrhoeaeMILASLVRYYRRLATETDETGNPKVPSYGFSEEKIGWILVLDKEGRLKTVVPNLTADKKPQPKLMSVPRPEKRTSGIKPNFLWDKTAYALGVEANKNKAEAKEKPFTPSEKTFEAFKQYHLDLLQNSEDEGLQALCRFLQNWQPAHFAAENLPAEMLDSNTAFSLEKPTALIHKREAAQTLWAGCLKSDEALESLCLISGDTAPIARLHPAIKGVFGGQSSGGSIISFNKEAFSSFGKEQGANAPVSEQSAFAYTTALNYLLRRENNHCLTIGDASTVFWAEADDIVD
complement(1035416..1035712)       transposase; NgFC428_01055                                                           N/A                 NeisseriagonorrhoeaeMAYSADLRNKALNHSGLTKIRTRRRTAGSTNGTEPIRPALHHLREPFPLGRGGATPYRFLLIRYITDNAKTPAKPQQRLTCQETRFTCGFALKNKQAA
complement(1035741..1035950)       PHAGE_Mannhe_phiMHaA1_NC_008201: DksA-like zinc finger domain containing protein; NgFC428_01056; phage(gi109289947)     2.53e-10            NeisseriagonorrhoeaeMTDFADRASEREAEFLVEALAKHQPPSENTAGFSHCEDCGDPIPEAKRKAVRGCTRCVVCHEYSQLKTK
complement(1035943..1036233)       phage associated protein; NgFC428_01057                                              N/A                 NeisseriagonorrhoeaeMKRQTKTATVLTALARTACTSTTVPSDTPIKTVAVAEIPPVPSGLLVEYERPERPAGGSPEQLLNHAVRYGGYYRKLEIQIEGWQNWHTKGRLKHD
complement(1036238..1036525)       phage associated protein; NgFC428_01058                                              N/A                 NeisseriagonorrhoeaeMIEFVRAKKRLLWAFVLLLAWACGYRYAADKAEAEQTALIAAYRHSSMVAAEQYALQLKKAQDERQRWYDFSQKQSTDLAAALSELDKTRNTLQE
complement(1036645..1037283)       phage associated protein; NgFC428_01059                                              N/A                 NeisseriagonorrhoeaeMTIQSKHYEIRPKQAFITPENVSIPADLCCEVQVRSLLQHAYAELVHDNIYKPDGNVPKQAEREVAKSMALMETTDDLFSRTLAILKEANQPQEELLPQLSQLYQKEIGLVPEVDKKTNMIFLETFQSSISQSSILSDIRSLLNEKKYIAKRIKENAEEMYFFSQPAALLVYWLIEKVGADEVWKKWPLPAYNKNLKFICTDLDKQPSHELF
complement(1037280..1037654)       phage associated protein; NgFC428_01060                                              N/A                 NeisseriagonorrhoeaeMSDIDDFKSYLESHQAAFSAWGRFVAEEIQNQLSNVISPVPVANFLKIEAKPGVKEISSALAKIGRKNYTSPQTQMTDLVGVRFVALLAEHIQIVCEIIESSSQWNAKVSKDFADEIQQNPKAI
complement(1037651..1038691)       putative phage associated protein; NgFC428_01061                                     N/A                 NeisseriagonorrhoeaeMKKIITHRIYPKNENRERVEPKISTHLIDLPITARRTLETRLTKALGNKSHGIEMSVVNTAENSFFQIAAAIQLKEEAEFIEDSAQFAHMLTDAQLNTNAPGGILLVLKGRVGDTGKPFLCVIKAEPQDGFRTKEEDDFITIEFLEELLLTDSARLFKIGFLVAETVRPLEQIQSGNYRAFLYDHLMTQTETRPAASYFYQVFLGMSIAASSRKLTQDFFEWTRNFIDNSDLSDDAKLDAHEALRVTLKSAEATISVNNFAQNHLPQEKRTTYTEFMVEKDFPQNAVSKDIEYIKTRLRKRRSYGFSNGVVILTPPEHTQDYMEIAPTEDGEYTVVLIKGQLQQQK
complement(1038925..1039305)       PHAGE_Pseudo_B3_NC_006548: transcriptional regulator; NgFC428_01062; phage(gi56692586)     5.10e-12            NeisseriagonorrhoeaeMEKTSLFGKRLKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSKIGIDIDYVMHGRRGETAAMPSESLSAEEKELLALFRQLGSGSRKELADYAAFKLVVEKKAQTALGKVSNG
1039396..1039575                   Uncharacterised protein; NgFC428_01063                                               N/A                 NeisseriagonorrhoeaeMNTLKAHARQLMMDHIHPATGKSLFILKQAKTLLLHNRPDVYRAKRPKTKHIIPHERHK
1039514..1039807                   PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NgFC428_01064; phage(gi56692585)     6.26e-05            NeisseriagonorrhoeaeMFIVQRGLKLNTLYHTKGINNIEKPLNFKPIPYPQTRGSTAVWFKRNGVCKTHRAKHFNLERTAVEHPLRGKLKGNFGKSHEAAVKFGLKEDADGDE
1039794..1040078                   PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NgFC428_01065; phage(gi56692582)     3.13e-14            NeisseriagonorrhoeaeMATSKKAQRLLRVFLAMDAHPVIGISNKELSDGLGLTPSQVSRDIDDLVASGLVIKLENGNYAYGIKTLQIAERFRKQQERLNARLQELENRIY
1040115..1040297                   Uncharacterised protein; NgFC428_01066                                               N/A                 NeisseriagonorrhoeaeMATEILGHTVGVTANELAIHSMEVMDKFSGGEAYNETVWIERGRFADAKRWKGCLSRDAR
1040264..1040386                   phage protein; NgFC428_01067                                                         N/A                 NeisseriagonorrhoeaeMEGMFEPGRALIIIKEHTPHGRFAEIAEKELASDGGNPKD
1040386..1040988                   PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NgFC428_01068; phage(gi56692581)     2.05e-25            NeisseriagonorrhoeaeMNATLRFIDPKMKQAQPKLMTLGKSKLLELLVEDDDTLLELAEGGEVNGNTFDDVDRMTIKELRVALRESRETAEAKDKVIADKNKKVDELAEKLSKKQTGVKEPKPADVGIELTMQLGSLEVGIRSQISRLRDMFEQMAAHGEAHGFDHRAKMVGTLNQIILDCEQLRESYALPTEAPADNVPEWLGGETGEGDESGND
1040969..1042747                   PHAGE_Pseudo_B3_NC_006548: putative transposase A subunit; NgFC428_01069; phage(gi56692580)     6.95e-161           NeisseriagonorrhoeaeMNPAMIERLKAVENQAEAMGRGARSAYLKQQAQELGISLATLYRKLEAVSVKPTRKRRSDAGKTELKPEEAKLISAVLAEAMRRNGKRLMPVRQAVEMLRANGKIEAARIDGETGEVIPLSENTITRALREYKLHSDQLLQPDPVSRMKSEHPNHCWQIDPSLCVLYFLPRQGKDTGLRVMKEEEFYKNKPKNVVKIENDRVWRYTGTDHASGTISVRYYFGGETSANLCDFFIYMMQAKKDIGKDPFRTVPRMVMLDPGSANTSAAFKNLCKPLDVHVQINKPGNPRAKGQVEKANDIVETAFESGLRFTEVHDIDQLNALSERWMRYYNGTQKHSRHGMTRYQAWNKIKPEQLILPPPAEYCRELAVSAPKEAKVSADLEIRFGGRVYSVKGIKGILVGKKVLVGKNPWEANGARVATYDAEGNEVWVSVPEVVFDEMGFKADAAVIGAEYKAPADTDAQRHRKELDKLAMGAETLEAAAAKRKGKAVPFGGKIDPYKHQEDTLAASNTLFMPKQGQQMDYNKMEVAEQVLSKVEIAKRLKPRVEADGGDWKQAVSVILKHYPEGVTEGRLEEAFERTRTRCRLKLLKTG
complement(1043058..1043702)       putative DNA polymerase III subunit; NgFC428_01070                                   N/A                 NeisseriagonorrhoeaeMQYGGSPFFFPALGSLHAYKIKAELVGRYHSGCYVSAKNLLKTFTTVRFEKGSDGMLNAKTAALKNGVTDNPPTGLFANKKAARRALSSWAETYGLCPASAGILPDGYAEDEPCPVYVSGRCDKACGRSDEQVLAFAHKLPVLDWGKMHEVEITETDPLTGEKSFCMEWAAHWKWMTGFGISIKIYRMCLRRSLKRTGKILRKSVKSIPVGESW
complement(1043706..1044473)       PHAGE_Clostr_phiCT19406A_NC_030950: hypothetical protein; NgFC428_01071; phage(gi100067)     2.56e-26            NeisseriagonorrhoeaeMIVVSRWPLLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFVAELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRRLYPQFYKHSLDGIIERLGIVVEDRHRAMADVSALRDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLRERLYGLPDGTGVLACFDGGGKVNYIGTFERAYGEVAALLDSGKAPV

#### region 4 ####
1107338..1107640                   putative phage associated membrane protein; NgFC428_01137                            N/A                 NeisseriagonorrhoeaeMKTVPTILTGILLATALPASAHGMHKSKPLAMDELPPICQQYFKRTETCYNKAGNKADFARNNTKFLFQALPAADLGQRKQMCQIAMDSFAEKTRNLNCE
1108599..1108766                   putative phage associated protein; NgFC428_01138                                     N/A                 NeisseriagonorrhoeaeMVNEKLAENRKRYEQKRVIKKVSFNAETEKELLEYAQNLDFSQWVKSIIKEKIKK
1108926..1109771                   PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NgFC428_01139; phage(gi31544021)     2.29e-46            NeisseriagonorrhoeaeMNAVQVLNFQQNSVRTVADNKGELWFLANDVCEILGYTNPRRTVDLHCKSRGVTKRYTPTTSGEQEMTYINEPNLYRLIIKSRKPAAEAFEEWVMETVLPAIRKTGGCQVGPKTTADDRTGLRQAVAALVGRKGIDYSSAYSMIHQRFNVESIEDLPAGKLPEAVAYVHALTLHTGLTGEVLDAPPKAEPKLPIDGNSLADIAAMVYYGTWMIESGKDISAPLKQLGCRQAVTMWTVWHETRPILKRSAAALEVLRGYADKDASDRIAACLEGIYGKATVR
complement(1109808..1109957)       putative phage associated protein; NgFC428_01140                                     N/A                 NeisseriagonorrhoeaeMSAEEFCRKQIAYWLNESRKASDNADLKAFEFAGREPADYREMLKRYAA
complement(1109960..1110544)       PHAGE_Pseudo_F116_NC_006552: hypothetical protein; NgFC428_01141; phage(gi56692957)     1.08e-34            NeisseriagonorrhoeaeMVERCGSRGVPARPAAAFGRCVCNGCGKRAAALCLCGRGFAAGYAYEIDSIRFVSDGKPVCLKLVSPEAADVCAPGWRDGAQTGLPVYAVQGDGKLTLAPAPDRDGRLFAGGYCLPRDMAGDGDEPEINSIHHRNLVYWALAEAFSIPDAETFDPQRSESARRRFELYFGLPADSDLRRITREDAPHLNRHFWI
complement(1110630..1111037)       PHAGE_Pseudo_F116_NC_006552: hypothetical protein; NgFC428_01142; phage(gi56692956)     5.09e-08            NeisseriagonorrhoeaeMDKVFIKYIGGRAVWRDRIYHTGLVFEDGQVREVSAGAAAKLLRHGDVFAAVPGKRVEKADDTEALEKAGASELERETAAFDAVQDVILQINRMGKDELELYAKANYGQGLDKRKSAENLRGDVVRMVRQFGIAQ
complement(1111121..1111594)       PHAGE_Pseudo_F116_NC_006552: virion structural protein; NgFC428_01143; phage(gi56692924)     1.30e-30            NeisseriagonorrhoeaeMAEIYVKNNGGNRFGGVPYGNLAAEHYRIVAKQDGAILGADASEPPKAGDVLALGVLEQGFRLDDAQIIVKTAMSSGITADVGFAYADGADDAKVPQDAAYFASGADFASAGRIRCQSAKLVTLPKQALLTVTLKGAENKKAADIDILIYGEKFGQL
complement(1111633..1112943)       PHAGE_Pseudo_F116_NC_006552: virion structural protein; NgFC428_01144; phage(gi56692923)     8.28e-157           NeisseriagonorrhoeaeMAQKTNTAYGDPQAMMKQAAGLFAMHMQRNSTLNRLAGKMPAGTAGAEATLRKQTTQHMPVVRCQDLTRGMGDEIRFNLVNPVSALPIMGDNTAEGRGVGMSLSEAGLRVNQARFPVDGGGTMTNQRSPADYRALIRPAAQSLMDRYADQTLLVHMAGARGFHDNIEWGVPLAGDPKFNDYAVNPVKAPSKNRHFTASGDAVTGVGDNGGELKIASTDLFTMDTVDSMRTVLDQIPLPPPIVKFEGDKAAGDSPLRVWLLSPAQYNRFAADPKFRQLQASAIARASQANQNPLFLGDAGLWNGFILVKMPRPIRFYAGDEMKYCADKFSEAESGLKIPASFADKFAVDRSVILGGQAVLEAFANTGKHGGMPFFWSEKELDHGNRVETLVGTIRGVAKTRFAVDVGGARRKLPTTVSRLWIRWFLCTAVSADSNAA
complement(1112964..1113524)       PHAGE_Pseudo_F116_NC_006552: hypothetical protein; NgFC428_01145; phage(gi56692955)     1.81e-20            NeisseriagonorrhoeaeMRERIEELEKGAEKPGVETADGSDNSLFGDFSDEDVKKGVEKLIQEKLAGYEADMKRQEAAKAHYREIYTAHPDADSIVESRELEEWLAGQNPLVRKAFNDALKDGTAAEVIGAFDMFKAAKSAAEPEKPAEKPPAGKNTPNTLSDIPAGRDHTASDGPPDYLSGNALAEKLASMTEEQVEKFLNS
complement(1113569..1119673)       PHAGE_Vibrio_12A4_NC_021068: hypothetical protein; NgFC428_01146; phage(gi481019131)     5.71e-88            NeisseriagonorrhoeaeMRQFADRTKQEEAGRFFSGPADGNTPHAEELARGTEKQPDVSGIPSEDGAEFLDTGVMPDGLARQYADMAAKYRAKPSEAVGIDPDDGAVSAAAALAADSGAAVPSAVSDDMEARSVADDAPSGRSADADRGGVPSAYGNVRPGGAPRGAASVAPGGSAAAASGGIARVAPLPAGQYFDGLDTRGRKALAKEAGLDIKGVADFGQIAAPVRRKIEQAYHARIEADYQAASEAKQGYLPPPVRMADAVPVPKKGFSVPADALDKESRRRFDALPEWVRRHAQTVADYTADGIMRREAGMADMRGHYPEGLAESAGAVRAYRAQHPESADVLDRLNRAVYGYRRNNGWSVPLLSREGERLQGVRTALPDDGASEAVVGGGRGLTRALPTEDKGLAQDVRQDVRQGLTQGGRGLTPDAGADANAAALQGLPGSAVASGNAPARRQNLQVRARAEGAAPGLSASENLAGTDGGKRAPVAGKRPDTVLPVLNPQVAESAGRVSPKKRMADAAADFTRRLAADRRRPEKAGVPLGGGEYRFEHTDRRHIDALAGVPGRPGKGGMPEEFADMAGPSNSDGLVSDGRRYLKGREAETLRAGGLSEAVPSEPGRDYRPTQEARAPAKVMARPRDAAADGKPAGRAQPARAKDTPVAGKAAAAKNAATEKPSSDKVRNIEAGKSRFDGGKGKSAAAQGAATEKPSEKTGKAKPETFAKTASDNPEEARRKARVLQGGPVYTVKERQAPQGFKALREHAESIKKRLAESIGGLAERVDVAAVSETAPDKAQMLLSQRVEGWFDGRTGKITLVAENLTPERAVWAAWHELGHRGFAADGFAKYREELERADGNGLIRRIADAVQEGREGTGDAAASVRPAAVEEAVAELYAAQRTGGWAGIENRYGVKVGNGLKRGIAGVLARIGALLRRVLQRLAGKAGGAMSDADVFAMLADLHGNVEGARDAPWGGNHRAVMFARAEDGAAERSKSESLEKLRRAETIRISGREVPEGGNLREYKRNALEYGKSLRGPYVNKDTGREISLGRSGITEILRHDYKDAEHLQSIAAIPQIIENAVYIDTLPNEDLAKNGDIQGYEYYVSGLNVGGADYTVRAAVAVSRNGNRYYDHKLTKIEKGNLLSLLDRVSTTGASESKSPLSGIDDKRLLQILQDKDAGKGGIADFDTEAVRFSRAANIEAAIGRITGKKSDLRNALKDRWDASKGIQLQFLGRRQIEDIYGGVLDGLKEYGRLSELFGADANKAVTEADKVVREWGRLKEEDAKALADLMHDATLAKVDADPLMRKDAQKRLDGIRTALDIADGKIEKAEAAVASAGARIARADAAYNKAQRAADKAAYALEKAQEKHGREILADEADMRLRRLFYADSEAKRALRRAGADVAAESRAKTDAVRMLEQARADVKRLEKDEVGAQKALEGLALLNRRFAGLPDAAQRVYRKARDDYRAHFGQVRDALAERLARAGQDAETVRRLKERFDNELGGVYFPLARFGDYLVVVKDADGNSANVSRAETLSEAEKLRDALKADFGAGFKVSPVMKSRDYIRSRDAVGSGFMRELGEAVGMLDLDPAQRARLNDTLTQLYLNSLPDTSWAKHGIHRKGVPGFSDDARRAYAQNMGSGANYLAKLRYADRMAEQLDVMQDFVDGRKYEEGFDQRQLQRVADEMRKRHEAVMNPNPSKLAQALTGFGFLWMMGMSPASAVVNLSQTAMVAYPVMAAKWGYAGAARELLRASKQIGLRFGEKFNTIEDSLNGDEKAAFRKAADYGVIDLSQAHDLAGVANGDPGLAGSAWQKVMDKAAWLFHHAEKFNRQVTFVAAYRLAKRAGADSEAAFEQAKKATYDGHFDYAAQNRPRFMMGNAAKVVFLFKQYSQNILYALGRNAYLAFKGDKQARKTLAGLLVSHAMASGILGLPFVSTLLAVVSMLGSDDDDPWDAEAALRNMLADTFGDKAGEVLAKGFSRLTPLDVSGRLGLDQLVFPDIQDGLEGKKWAESLVVGSTGAVVGAGIGAADGVRTRSSVPRTANTLSLMKSW
complement(1119705..1120919)       phage associated protein; NgFC428_01147                                              N/A                 NeisseriagonorrhoeaeMSDLVRYDPLEHGRLAGGLKEYRGFTQKDARAAADDTALTRGFKNSMRSARMGWNALTGDKEELGRLKAEDMDYRKIQEGRKSQARRELGEAWEKGGGVGDGLSNVWGELKKDWREKGLDGALEDVGEMGGAVLEQAPNALVPIATTTAGGILGALAGGNAAVGAYAGATLGNTLMEYGGQLDRAAEAAGVDPADKDAVMAFIGRGAPGALKNAAVKGAVVGAADMAAMKLGGSILNMGKKAAGKAALEKMGVAAADKAAVAAAKGTPEFAALAKESAKGGLGGAARHAAAYATESAGEFAGEYLGTGLANGEWDEKGAALEAFSSLGHSAVGFAGTKAYAAVTDPLRPPAGRKAGAQGGIGGNRKAGRPAPEGAQALRAAAQAAADGGTGGCGRRRGTGRRGF
complement(1120916..1122112)       phage associated protein; NgFC428_01148                                              N/A                 NeisseriagonorrhoeaeMGLFEPSAGDFWEMKEKEEKEKARKGAEERERAAAQAHRADAVRRTVANYEAGPARYRNVMDLSRNNIEDGARRLRRAGAFERGADAGLGFSGGDKALSPDARAGADFARRDTRPTDAGGRTPPPLGFDGNVYRGGKPVRDFDAQRPLVSSKPDALSPEERELYKRATTPHAGALNGQLTAAQLNAARGIVAEHNKNAAVRELGRERLAAAAAENAANREAVLQKGRFDAAVKANEGALNREMAQRNADRAFDVQQAELGMKRQGFEMKREADALELEDRKRIADLTRAYGFAKSDGQRGEIARQIDALNGKFERQGEKGFDPNVFKTISYEVADPDTGLTAKREGIVDLRTGKPLDVEFAGEREKRYAQLGFKPNGQKTAGGKIIYENEKGEKRVEQ
complement(1122358..1123182)       PHAGE_Salmon_vB_SemP_Emek_NC_018275: antirepressor; NgFC428_01149; phage(gi399498814)     1.12e-39            NeisseriagonorrhoeaeMNNSVQISNISIHQTEIGLFSLNDLHRASGGEDRHAPRRWLQNIQTNDLIKELEKDGKPSIQSKQRLGTFVCRELVIAYGMWISPKFALQVIQTFLAVSDGIKSAKTTADDRTGLRQAVAALVGRKGIDYSSAYSMIHQRFNVESVEDIPAGKLPEAVAYVHALTLHTGLTGEVLDAPPKAEPKLPIDGNALADIAAMVYYGTRMIESGKDVSAPLKQLGNRQAVTMWTVWHETRPILKRSAAALEVLRGYADKDTSGRIAACLEGIYGKATVR
complement(1123503..1124165)       hypothetical protein; NgFC428_01150                                                  N/A                 NeisseriagonorrhoeaeMLKHIKALRFLRVISFVMSAIFFALSLAAKGGAVTNFFILFFVLLIAGSLMSKAINKLNEKEKEKEKIRLLFAQREKFYRILENPEQGFTPPTALLKSGETCFLIDYVNMGEVVTERVRTYTGTRLKLGSTPVYLGGGKSVANEKQKNVAYGELVLTNFRLIFVGNMRSIDLPLDKINSVECFQSSIRISQSGKNKPIFFNTVFNPQLWKEAILVLSDKK
complement(1124237..1124644)       hypothetical protein; NgFC428_01151                                                  N/A                 NeisseriagonorrhoeaeMNQQEFEFMNDLARAFERRYRDTRSLNRCLSIEGRYMGEEACPHKPEIGLRYGEDAMFLTLQAWAKVDAPQQEAVRISFGIGAKSQAAYEERLQAEIRRRGEGPLHLQTDLGLAAWYRAIRQAAGNDFDLLFEKV
complement(1124911..1125291)       PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NgFC428_01152; phage(gi148609431)     4.82e-08            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYKETVRRIAQGAGAMPSEGFVAVRLRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVTGGGLAVEVGELDEK
complement(1125282..1125563)       putative phage associated protein; NgFC428_01153                                     N/A                 NeisseriagonorrhoeaeMAEEMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
complement(1125592..1125741)       phage associated protein; NgFC428_01154                                              N/A                 NeisseriagonorrhoeaeMDTFLKIIATLSFAGAATLAVWLLVEAADAVLRRKRDGKGEDDFDGFGY
complement(1125763..1126218)       PHAGE_Mycoba_Gengar_NC_031035: hypothetical protein; NgFC428_01155; phage(gi100045)     2.37e-08            NeisseriagonorrhoeaeMTVRNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRADAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEEQRLNNG
complement(1126533..1127315)       PHAGE_Vibrio_X29_NC_024369: IstB-like ATP binding protein; NgFC428_01156; phage(gi658311189)     3.62e-44            NeisseriagonorrhoeaeMALRNASDFLGAYGGGVRVERRQCAEHGGYAAKSVLRGVWTGCPACRKLEAADEMAAYAETLRRGAMRDALEKRIGRSGIAPRFRNCRIENYAVSDSIPGMARAKAAAAEYAANFADVLQTGRSMIFSGRRGTGKNHLACGIAREVIAAGKSALVITVGDMLRTVKDSFGGGGGEAGAVGVFVKPDLLVLDEFGAGSLSETDGRILFSVVNARYERLMPMLVLTNLTAEAFRENTDARIRDRLRDGGGKLIPFDWESYRA
complement(1127330..1128352)       PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; NgFC428_01157; phage(gi100046)     3.57e-15            NeisseriagonorrhoeaeMSARLMGMAFKTGIPRGQRFVLVKLCDCANDEGLCYPSQETLAEDTGFAETAVRQHIKWLKDNNFIKSARRQRGRERKSDIYRINVALLEKCYAEAAKRKAARQAKMWEEPLDYEPSDYEPSDFEPSDYEPSDYEPSDFDAKNHQILSGEPSDFALRTVRFCAKNHQILSGEPSDFDGSLYVEPSVEPSVEPSVEPSGSNARGARAPAGPHPAKPQTAPPETAPAAKAKKTGRHAAELALLAAYGITGQAAADFLQVRKAKRQPLTETAMRLIAADAEKCGMTALQAAEYAIASGWGSFRADWLQNKTFGRSGNRGGPTHNQTAAVPDAGSYGDMPTTDF
complement(1128349..1128576)       hypothetical protein; NgFC428_01158                                                  N/A                 NeisseriagonorrhoeaeMNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTQLAARITDLEGRGFVFAKPRMKAGGRGKPVTHYSIVKNGAEV
complement(1128809..1129069)       hypothetical protein; NgFC428_01159                                                  N/A                 NeisseriagonorrhoeaeMKKQDRNRLSKKDRRLIKKAMLKAAAKGSDEVYKIAPGLKDGFELLGKQLNQIFVIGIWLRFFGFLMKCSDEYRQFSGLSFGRTAL
1129492..1130196                   PHAGE_Shigel_POCJ13_NC_025434: putative transcriptional regulator; NgFC428_01160; phage(gi725949713)     3.24e-38            NeisseriagonorrhoeaeMTNRDLKAIRIDNLKRFFENKKLPVKDKSLLSQLMSGKASFGEKVSRRLEEEYGMGSLYLDSVPSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDYNGYRLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWSVLD
1130356..1130895                   PHAGE_Salmon_vB_SemP_Emek_NC_018275: hypothetical protein; NgFC428_01161; phage(gi399498806)     8.69e-37            NeisseriagonorrhoeaeMLNAYDVADFFLSPFEEEDGEQISNLKLQKLLYYAQGYALAILNRPLFAENIEHWQHGPVVPCIYRTYKKYGGSPLPAAHIEPDKYADEELVVLNRVRKEQGCYTAWALRNKTHQEAPWIQTRQGEVIGIALMGEYFRHALPQTDYNFNLEKLKTAVEDSFVSVPHFNGADDLEKWLEQ
1130896..1131255                   hypothetical protein; NgFC428_01162                                                  N/A                 NeisseriagonorrhoeaeMQVLLGEDFKRALKNYPKEDRRKIAEFIAHVQQNGLSGLPGRNKSSDNVPADDPQWLEKVRFAQRHNLWHYHIGIPKYNGGRYGDLTSAYILHYTLCDGFIKIIGFDRHPPFILPDIPK
complement(1131272..1131490)       hypothetical protein; NgFC428_01163                                                  N/A                 NeisseriagonorrhoeaeMANSNSGHSKKLRAATAAAATKAKLASGEYRQFSVQGRAEDVELILAAVEKAGGSRVQALAKICRRYLEGLS
1131974..1132174                   phage associated protein; NgFC428_01164                                              N/A                 NeisseriagonorrhoeaeMNELISRINRFGTRAKDGQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
1132207..1132683                   PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; NgFC428_01165; phage(gi197085698)     1.05e-32            NeisseriagonorrhoeaeMEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
1132680..1132967                   phage associated protein; NgFC428_01166                                              N/A                 NeisseriagonorrhoeaeMSYLDQPLKHGYGNGNGSGNGDGYGNGYGKGYGSGYGNGKGDGSGSGYGNGKGDGNGSGNGDGDGNGNGSGNGSGNGDGDGNGNGSGNGSGYGNG
1133108..1133440                   phage associated protein; NgFC428_01167                                              N/A                 NeisseriagonorrhoeaeMKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESGLIEIAKKSAREFVRDADGEPYAQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
1133594..1133872                   phage associated protein; NgFC428_01168                                              N/A                 NeisseriagonorrhoeaeMKTRNIAFKFAVLAAVLAAGYAFGFAKGGGSRTAKGKPAGIAAMRMALAQKQAEVAELSAEIWLEERHLNADEEEAGCRRVHGDAEVPGGKE
1133869..1134030                   phage associated protein; NgFC428_01169                                              N/A                 NeisseriagonorrhoeaeMSFHPETAYNGGGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
1134099..1134785                   PHAGE_Pseudo_RIO_1_NC_021300: putative ssDNA binding protein; NgFC428_01170; phage(gi508178031)     1.89e-10            NeisseriagonorrhoeaeMSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKHPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGQTEYPQGNAAPAEDIEDDIPFN
1134925..1135107                   putative phage associated protein; NgFC428_01171                                     N/A                 NeisseriagonorrhoeaeMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
1135104..1135595                   PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NgFC428_01172; phage(gi374531698)     2.27e-19            NeisseriagonorrhoeaeMTALTLYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEEHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGRQVAGAKIEGRKNLQIR
1135647..1135862                   phage associated protein; NgFC428_01173                                              N/A                 NeisseriagonorrhoeaeMSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
1135973..1136956                   putative phage associated protein; NgFC428_01174                                     N/A                 NeisseriagonorrhoeaeMQTVATKPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLSLQDMRYACNQELINFAEHIVKQVQRLGLYCNTDDPANGESVLFACREASQAVAQWTKDFDDLSPNQRQLVLRPLSNLFAAYEEFLKDAPARLIAEVSAYSLAVRVAKKAMAFLELDGGLISAVGKVVNGADSRAEARRLKMPYAEFTGRILHAANLLYDVGIQADKELSAMYGKPLNPVRPRRISDVRRPMMKMLVADKGGALVRAVKDSEDVIRHCDNGAGFSCFNWTEHFKRTANLISLMHREAAA
1136953..1137183                   PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NgFC428_01175; phage(gi971749633)     1.47e-13            NeisseriagonorrhoeaeMRTHIRTCVYHDSGTKGFKHGIRHKRHGCRRGGTSVFQRGEDGKPQRVSRIRKRSATPGQAKERTKTHDVSRTQQP
1137155..1137367                   putative phage associated protein; NgFC428_01176                                     N/A                 NeisseriagonorrhoeaeMTFQGHNNRKKAGGYAEYITGGELRLLQQTACRFKAALETAAWKHYVRAIKESEPVPDAEARRKRKKQAA
1137393..1137587                   phage associated protein; NgFC428_01177                                              N/A                 NeisseriagonorrhoeaeMDSEYLDPQQCADILSVKKRTFLERYAPRPDFPARISVSKKRFWWKKEEVEGWLDRQKEKRPVM
complement(1137643..1137727)       tRNA                                                                                 N/A                 GCGGACGTGGCGAAATTGGTAGACGCACCAGATTTAGGTTCTGGTGCCGAGAGGTGTGAGAGTTCGAGTCTCTCCGTCCGCACCA
1137878..1138552                   Uncharacterised protein; NgFC428_01179                                               N/A                 NeisseriagonorrhoeaeMPAALIKDFLLTQGLKLPLDEVRAAYLTAQTVMDMGMASIDRSVLWCNDEGWKLADYLPCDDVREDALKRLFMALDSVFSRSTGVRSAAVYALMPSENAALRLVCLSQQGEGLENIWEQDGNITDVSLACRSAQSGWMNVASDVRRWLNLGELSGERNHASAAQISIPVCTESGGVLGVVHVEFECAECADTAAQAEWVALALALSEPLKQLLGITAAEGDENV
1138545..1139138                   GTP cyclohydrolase II; NgFC428_01180                                                 N/A                 NeisseriagonorrhoeaeMSELLDHVASCRLPTEWGVFTMHGFEEANGQEHVALTVGNCSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQAEGRGIIVYLRQEGRGIGLINKIRAYHLQEQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENERYLQTKADKLGHLMSE
1139306..1139506                   glycosyl transferase family protein; NgFC428_01181                                   N/A                 NeisseriagonorrhoeaeMIFSIIVPIYNVEKYLRCCVDSVLAENFADYEMILVDDGSPDGCGKICDEYAGKYPHIRVIPCVTP
1139491..1140453                   PROPHAGE_Shewan_MR-1: IS110 family transposase; NgFC428_01182; phage(gi24375433)     5.62e-09            NeisseriagonorrhoeaeMRNAVGLDISKLTFDATAIVGNAEYSAKFDNDSKGLDQFSDRLKSLGCQNLHICMEATGNYYEEVADYFAQYYSVYVVNPLKISKYAESRFKRTKTGKQDAKLIAQYCRSAQESELVKRQKPTDEQYRLLRMTAAYAQIKSECAAMKNRHHAAKDEEATKAYAQIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIPAIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPGFIKRLEEKKKPKKVIIAALMRKLAVIAYHVHKKGGDYDPSRYKSA
complement(1141086..1141445)       phage associated protein; NgFC428_01183                                              N/A                 NeisseriagonorrhoeaeMIHKPRYIKIVDENGDFTRVLRLHKFPDTSKVFYFEPMFWLKDGRLARKDSLFEVDYIYGADGCGFLPSNLTEFRKYCRKKHQKFKDDEVLVNRYAVDFLGAKEPPYDDRHVTSVKYFV
complement(1141566..1142651)       PHAGE_Ralsto_RSS1_NC_008575: hypothetical protein; NgFC428_01184; phage(gi118430720)     4.22e-31            NeisseriagonorrhoeaeMIYLFTGNMGAGKTPRVVSMILNNEDGLFKMELEDGTEADRPLYFCHIDGLDKRKFNARELAEGQIMSAPLRDVIPEGAVLIVGEAHYTYPVRAAGRPVPPYIQELTELRHHGHTVILMTRHPSQLDIFVRNLVSKHVHLERKAIGMKQYYWYKCVTSLDNPAGVSGVEAANWKPPKEAFKYYKSSSRHQKFKKKVPWAVWALIAVVGFVGWKSYGMFQVYSKATDSRIEQEAQKESVVQTMTEQTASSETAPFEHSDNLKPEDFVPTLPEKPESKPIYNTVRQVKTFEQIAGCIDGGKSDCTCYSNQGTPLKEITKIMCKEYVKNGLPFNPYKDERQRTEQAAQSAKADKPQVLVMGGKP
complement(1142661..1142951)       ribonuclease H; NgFC428_01185                                                        N/A                 NeisseriagonorrhoeaeMPLLSGLIPLLGILLKMLIVRIILATGLTFVTYAGYLAALEKFKGYTSNAINSMPSDILNLLLISGFGQGLGCLFGAFSFFIGMHAFKKLTFVFPG
complement(1142952..1144520)       virulence factor protein TspB; NgFC428_01186                                         N/A                 NeisseriagonorrhoeaeMNSFIKSTPIVLILILCSSNSYSEPVRLEKSQIKFQSSNNLKSIGFKLDSSSNSFSKFTEAANFEHIPTGAKARINAKITASVSRAGVLSGVGKLVRQGAKFGTRAVPYVGTALLAHDVYQTFKEDIQARGCRYDPETDKFVKGYEYANCLWYEDERRINKTYGCYGVDSSIMRLMPDRSRFPEVKQLMESQMERIARPFWDKRKEEIPKDTALKWRLFPFSHCEFFWNGGGCFVRNGDNLIHRVYFKLERNPKYKEEMDAKKPEEILSLKVDADPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVAATFGRDAQGNTTADVQVIPRPDLTPASAEAPHAQPLPEVSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQPGTSPDSPAVPDRPNGRHRKERKQGEDGGLSCDYFPEILACQEMGKPSDRMFHDISIPQVTDDKTWSSHNFLPSNGVCPQPKTFHVFGRQYRASYEPLCVFAEKIRFAVLLAFIIMSAFVVFGSLGGE
complement(1144462..1144779)       phage associated protein; NgFC428_01187                                              N/A                 NeisseriagonorrhoeaeMNKPFITQAQLALYKYQPSSEYFGQSMAFIAQKEFEEFVNNVKEYDILESFSYFLNKRVAHNIWKIYFSDESVIFIRKSEENGKTVHEFVYQEYTDSSDFNSMFE
complement(1144907..1145185)       putative phage associated protein; NgFC428_01188                                     N/A                 NeisseriagonorrhoeaeMYCQVGNKCLEKHRAENLYFSLVVPRIKENGQIIRPEYNGSMWKMSDGQPLRLSLAECSPKDNLQSGLETGRIVFGVLASVYFVSLLKKVLK
complement(1145192..1145410)       phage associated protein; NgFC428_01189                                              N/A                 NeisseriagonorrhoeaeMKFINTCRKYGAKLAVVTAAPLALAAQANAALPETAKNALEAAKADGMEAGWIVVGVFAALFVFSIVKRVMK
complement(1145484..1145681)       phage associated protein; NgFC428_01190                                              N/A                 NeisseriagonorrhoeaeMQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEEAVNAGLEEIGNQCEFVVFGFLKD
complement(1145686..1145976)       phage associated protein; NgFC428_01191                                              N/A                 NeisseriagonorrhoeaeMNIQLQGHIVGVKKFNGQIEGKSFDYCRLIVATPLDSSQGNALGSSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQLVKKG
complement(1146021..1147352)       PHAGE_Ralsto_RSS1_NC_008575: hypothetical protein; NgFC428_01192; phage(gi118430713)     2.87e-21            NeisseriagonorrhoeaeMEDKQGMTKEVAGVMTEAPADGRKPTTASNLPPPPYLTGGGTETETAGRVQEVFECYETYITDGKGNLLGVPLRRGVSDSAFIDQITFSIHEDTFFHVYGLSFDLFDDDDFIRAASAKMEEIFGFGIIEKAKHSGGRFYEGCWLMGTENAQYGRVHYGGQRETMLVELTAVGCNAANIGWESRLFDFLTNAIRPKITRVDIAKDFFNGEYSPNQAREDRNKGLFTCHHVKPKGECLGSDWEEEDDETKMTSGKTYGIGSRESSKYVRIYEKGKQLGDKTSTWTRFEIEFKAKDIVIPFEVLQTPGEYFGGAYPICERFTGSANRIEAVKSKIMIDFDTYIERLKKQIGRGINASKAVFPDKSKQELFEVLEPKHDFLPKKLSFENYDCSEAKLTPLHEIPSVLKFDQYGMWMDRYIQRQKTGEEQRYLEKMYDKYANLPISWA
complement(1147491..1147913)       PHAGE_Burkho_KL3_NC_015266: gp46; NgFC428_01193; phage(gi327198091)                  9.07e-40            NeisseriagonorrhoeaeMTDIFTPSKRSFVMSKIHSKETKPEVLVRKFLFSQGFRYRKNDKRYAGKPDIVLPKYKTVVFIHGCFWHGHSCNKGHIPKSNMDFWLEKITKNRERDIKNETELEKIGFKVIVVWECELKNKAICRERLNRLVEEIKDAV
complement(1147919..1148515)       Protein of uncharacterised function; NgFC428_01194                                   N/A                 NeisseriagonorrhoeaeMKGESGVDIENWKNKLPEKEREPVEVILNRLEDSELTNKEQAEVISALHSIIPEYPYYHWRHLHQDLHTACNDFYNEKKDYLSAAIEAVKVFEDKVQKQTGLHSIDGRELIEKAFGSKKSMLLLTNNKTQAEQNLEDGLEQLACGTWTGFRNPVQHELRANLSPSIFNDKDALDLISLVSYLLRKVEQTKKRAKPTSP
complement(1148705..1149562)       HSP90 family protein; NgFC428_01195                                                  N/A                 NeisseriagonorrhoeaeMSEEKLKMSFEPTVIEHLGVKMYSHTVPAIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLRIGRNRREEKQASPCGRIPTGKKGLGKLALFRLGNKIEISTIQGNERVTFTLDYAEIKKSERIYQPEFQKESVKPNTENGTTITLTELTKKQGYPLDNYVGHLSRLFDFPAQDFKIKVSLNGSEPRIIDGNLKYNLVTPQFEWEYQDLATNISSLSSKFEQYEYSGLIQGKFITTEKPLKNNMKGITLFANGRMVNMPEFFTDSESSHF
complement(1149576..1150034)       PHAGE_Halovi_HGTV_1_NC_021328: AdoMet-MTase; NgFC428_01196; phage(gi509140530)       4.63e-11            NeisseriagonorrhoeaeMENGFPKIMAGHQDETDFMHSCAGLSDINLKRLALIPKNGGNRLAFAHIPELQLECFIGKDNSFKDTFGRLWWDKPAPTITTKFFSISNGRFAHPEEDRALSLREGATLQSFPRNYVFKAGSRDKIARLIGNAVPPMYAEKIGRAIVDNIEC

#### region 5 ####
1619261..1620316                   PHAGE_Synech_S_SSM7_NC_015287: transaldolase-like protein; NgFC428_01653; phage(gi326783962)     2.87e-06            NeisseriagonorrhoeaeMTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNLTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIQVVASFFISRVDSALDATLPDRLKGKTAIALAKAAYQDWEQYFTAPEFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAFIDHGTAKATLTESADEARARLAEIAALGIDVETLAARLQEDGLKQFEEAFEKLLAPLV
1620328..1620462                   Uncharacterised protein; NgFC428_01654                                               N/A                 NeisseriagonorrhoeaeMPSERLSDGIALLTGHSAAYQGSALKILMGKKLMHDITRQHKRK
1620467..1620757                   Uncharacterised protein; NgFC428_01655                                               N/A                 NeisseriagonorrhoeaeMAKALEIISPDEIYSDLIFKDPVPPHTIYTELMKLVGRNAGNERIADRAFDFFSPALMDDSATEEQYNALYDLTLLEEPGMELDKDEITALINSLK
1620774..1621661                   glutamyl-Q tRNA(Asp) synthetase; NgFC428_01656                                       N/A                 NeisseriagonorrhoeaeMYTGRFAPSPTGLLHIGSLLTAVASYADARSNGGKWLVRMEDLDPPREMPGAASHILHTLEAFGFEWDGEVTYQSRRYALYEETLYRLKTAGLVYPCHCNRKDWQAGARRGTDGFVYNGRCRHPGQRPALQGKQPSWRIRVPDRDIGFSDGIVGSYTQNLARDIGDFVLFRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLGVPTPQYAHLPLLTNAQGQKWSKQTLAPALDSNRREQLLRQVFRYLKLPEAPETDRPAELLDWAVAHWDMDKVPKHAITAP
complement(1621731..1622777)       tRNA-dihydrouridine synthase A; NgFC428_01657                                        N/A                 NeisseriagonorrhoeaeMFELKECENLMINKELIEHKGKRRLCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMHDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDNRAPIEYADLVQRLYTYSQVQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLKDNDGGLIFEAWKEVERANTRE
1622635..1622646                   attL                                                                                 N/A                 TTTCGGGTAATC
1622867..1624021                   PHAGE_Burkho_AH2_NC_018283: integrase; NgFC428_01658; phage(gi399529076)             7.99e-56            NeisseriagonorrhoeaeMATITKRRNPSGETVYRVQVRVGKKGYPAFNESRTFSKKALAVEWGKKREAEIEAGPELLFKRGKVKMMTLSEAMRKYLNETLGAGRSKKTGLRFLMEFPIGGIGIDKLKRSDFAEHVMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNMVAKSAIRDRLPTTEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDDWHKNDCTRPVRDLKNPNGSTGNNKEFDILPMALPVIDELPEESVRKRMLANKGIADSLVPCNGKSVSAAWTRACKVLRIKDLRFHDLRHEAATRMAEDGFTIPQMQRVTLHDGWNSLQRYVSVRKRSTRLDFKEAMMQAQSDIKSGK
complement(1624071..1624337)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NgFC428_01659; phage(gi428782341)     6.77e-06            NeisseriagonorrhoeaeMNISKEQGLLIAYGGRPYIPPREVHKDFFAHIGFNAFKASGVRCELPFPIFRLSDSRKSEYFVSVRELAKAIADKEEKAKSEYRKFRS
complement(1624445..1625392)       PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; NgFC428_01660; phage(gi970580043)     2.34e-116           NeisseriagonorrhoeaeMTFQGHNNRKKAGGYAEYITGGSLRRLVAAKVRRYCGEHPGVFDGAAGSGQLEQYIEPSDFRAVEIQAEACKALLQNYPAAKVYNTSLFLYTDGEPQDCTVMNPPFSIKLKDLSEDEKSRIAQEYPWKKSGVADEIFVLKGLENARRFGFFILFPGIAYRKSEQRFREIIGNRLAELNRIQNAFEDTPIEVLLLVIDKDKTDGGCIRELYDCKTDTLLAADTWQIEPDLWQTVQEPAPPKEKEDPVLLEHECRDAAAKRIARELRFSKMVNEIEGWPHAEFDGFCDRLCNLIQAEKYGKKHYFPCSLPLFGGAAG
complement(1625364..1625594)       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NgFC428_01661; phage(gi971749633)     3.59e-13            NeisseriagonorrhoeaeMRTHIRTCVYHDSGTKGFKHGIRHKRHGCRRGGTSVFQRGEDGKPQRVSRIRKRSATPGQARERTKTHDVSRTQQP
complement(1625591..1626574)       putative phage associated protein; NgFC428_01662                                     N/A                 NeisseriagonorrhoeaeMQTVATKPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLSLQDMRYACNQELINFAEHIVKQVQRLGLYCNTDDPANGESVLFACREASQAVAQWTKDFDDLSPNQRQLVLRPLSNLFAAYEEFLKDAPARLIAEVSAYSLAVRVAKKAMAFLELDGGLISAVGKVVNGADSRAEARRLKMPYAEFTGRILHAANLLYDVGIQADKELSAMYGKPLNPVRPRRISDVRRPMMKMLVADKGGALVRAVKDSEDVIRHCDNGAGFSCFNWTEHFKRTANLISLMHREAAA
complement(1626685..1626900)       phage associated protein; NgFC428_01663                                              N/A                 NeisseriagonorrhoeaeMSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
complement(1626952..1627443)       PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NgFC428_01664; phage(gi374531698)     2.27e-19            NeisseriagonorrhoeaeMTALTLYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEEHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGRQVAGAKIEGRKNLQIR
complement(1627440..1627622)       putative phage associated protein; NgFC428_01665                                     N/A                 NeisseriagonorrhoeaeMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
complement(1627762..1628448)       PHAGE_Pseudo_RIO_1_NC_021300: putative ssDNA binding protein; NgFC428_01666; phage(gi508178031)     1.89e-10            NeisseriagonorrhoeaeMSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKHPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGQTEYPQGNAAPAEDIEDDIPFN
complement(1628517..1628678)       phage associated protein; NgFC428_01667                                              N/A                 NeisseriagonorrhoeaeMSFHPETAYNGGGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
complement(1628675..1628953)       phage associated protein; NgFC428_01668                                              N/A                 NeisseriagonorrhoeaeMKTRNIAFKFAVLAAVLAAGYAFGFAKGGGSRTAKGKPAGIAAMRMALAQKQAEVAELSAEIWLEERHLNADEEEAGCRRVHGDAEVPGGKE
complement(1629107..1629439)       phage associated protein; NgFC428_01669                                              N/A                 NeisseriagonorrhoeaeMKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESGLIEIAKKSAREFVRDADGEPYAQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
complement(1629580..1629867)       hypothetical protein; NgFC428_01670                                                  N/A                 NeisseriagonorrhoeaeMSYLDQPLKHGYGNGNGSGNGDGYGNGYGKGYGSGYGNGKGDGSGSGYGNGKGDGNGSGNGDGDGNGNGSGNGSGNGDGDGNGNGSGNGSGYGNG
complement(1629864..1630340)       PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; NgFC428_01671; phage(gi197085698)     1.05e-32            NeisseriagonorrhoeaeMEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
complement(1630373..1630573)       phage associated protein; NgFC428_01672                                              N/A                 NeisseriagonorrhoeaeMNELISRINRFGARAKDGQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
complement(1630895..1631455)       hypothetical protein; NgFC428_01673                                                  N/A                 NeisseriagonorrhoeaeMDIKTEEAYRLSFQHIQSHDVLAACRTVANYELSQPRPRGLFSGISAQEYWESYPCNEDAEILKSILLDSPEILDGISGGDMEMARIMAAFNFIWGLSHFPKWLHRHEFASTPLDDSAVPAMLLFHAQSRQELKEYEEVELSCCPDGCEFCKSEDGKIYKSSDAPVLPHAHCTHEQGCRCCYLPVI
complement(1631455..1632153)       PHAGE_Haemop_Aaphi23_NC_004827: putative CI protein; NgFC428_01674; phage(gi31544010)     6.43e-67            NeisseriagonorrhoeaeMNRVDRIKNLIADRFNGNQAEFSRAINKAPAQINQWLNGYRNIGDGVAAQIEIALGLPRGWVDGNDKPGIPVDSIKSNATVIGSVDAWDSKTPLSDDDCEVPFYKDVCLSAGNGFSDEIEDYNGYKLRFSKSTLRRHGINPDDVVCVSADGDSMEPVFPDGATLGINTADKMIKDGKIYAINHSGLLRTKILQKLPDNQVRIKSYNPEYKDETASLDSLTVIGRVFWWSVLD
1632267..1632497                   PHAGE_Entero_c_1_NC_019706: prophage antirepressor; NgFC428_01675; phage(gi428781783)     5.60e-07            NeisseriagonorrhoeaeMDLRDYCAIRGNQSDLARKTGISPSFIHQIAKGLKPVPIQSAALIEKSTNGRVTRKEMFPDTWHLIWPELADDQPK
1632600..1633499                   PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; NgFC428_01676; phage(gi100046)     6.80e-17            NeisseriagonorrhoeaeMKYIPNSFQIANAVVDDFLCRMSGNAWKCYAVIVRKTTGWQKEIDYISVSQFKNLTGIKTDVTVADALKELVELNLIASVKRHGQVTGYRINMPEPSPENGGTPPPENGGTATPKNWVHPKNGTTPKNWGVLPPENGGTTTPKNWGSTKHTTKPTNTKHSISASAAADAPLSAEPPESGKRAPAAKAKKTGRHETELSLLADYGITGQVAADFLQVRKAKRQPLTETAMRLIAADAEKCGMTALQAAEYAIASGWGSFRADWLQNKTFGRSGNRGGPTHNQTAAVPDAGSYGDMPTTDF
1633514..1634296                   PHAGE_Vibrio_X29_NC_024369: IstB-like ATP binding protein; NgFC428_01677; phage(gi658311189)     3.62e-44            NeisseriagonorrhoeaeMALRNASDFLGAYGGGVRVERRQCAEHGGYAAKSVLRGVWTGCPACRKLEAADEMAAYAETLRRGAMRDALEKRIGRSGIAPRFRNCRIENYAVSDSIPGMARAKAAAAEYAANFADVLQTGRSMIFSGRRGTGKNHLACGIAREVIAAGKSALVITVGDMLRTVKDSFGGGGGEAGAVGVFVKPDLLVLDEFGAGSLSETDGRILFSVVNARYERLMPMLVLTNLTAEAFRENTDARIRDRLRDGGGKLIPFDWESYRA
1634611..1635105                   PHAGE_Mycoba_Gengar_NC_031035: hypothetical protein; NgFC428_01678; phage(gi100045)     2.41e-08            NeisseriagonorrhoeaeMTVRNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRADAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAGGGI
1635282..1635431                   phage associated protein; NgFC428_01679                                              N/A                 NeisseriagonorrhoeaeMDTLLSIITALSFAGAATLAVWLLVEAADAVLRRKRDGKGEDDFDGFGY
1635460..1635741                   putative phage associated protein; NgFC428_01680                                     N/A                 NeisseriagonorrhoeaeMAEEMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
1635732..1636112                   PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NgFC428_01681; phage(gi148609431)     2.31e-08            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGAGAMPSEGAVAVYVRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVAGGGLAVEVGELDEK
complement(1636441..1637403)       PROPHAGE_Shewan_MR-1: IS110 family transposase; NgFC428_01682; phage(gi24375433)     5.98e-09            NeisseriagonorrhoeaeMRNAVGLDISKLTFDASAMVGKTEHSAKFDNDSKGLDQFSDRLKSLGCQNLHICMEATGNYYEEVADYFAQYYSVYVVNPLKISKYAESRFKRTKTGKQDAKLIAQYCRSAQESELVKRQKPTDEQYRLSRMTAAYAQIKSECAAMKNRHHAAKDEEAAKAYAQIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIPAIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPGFIKRLEEKKKPKKVIIAALMRKLAVIAYHVHKKGGDYDPSRYKSA
complement(1637913..1638272)       phage associated protein; NgFC428_01683                                              N/A                 NeisseriagonorrhoeaeMIHKPRYIKIVDENGDFTRVLRLHKFPDTSKVFYFEPMFWLKDGRLARKDSLFEVDYIYGADGCGFLPSNLTEFRKYCRKKHQKFKDDEVLVNRYAVDFLGAKEPPYDDRHVTSVKYFV
complement(1638393..1639478)       PHAGE_Ralsto_p12J_NC_005131: ORF7; NgFC428_01684; phage(gi156535142)                 3.88e-13            NeisseriagonorrhoeaeMIYLFTGNMGAGKTPRVVSMILNNEDGLFKMELEDGTEADRPLYFCHIDGLDKRKFNARELAEGQIMSAPLRDVIPEGAVLIVGEAHYTYPVRAAGRPVPPYIQELTELRHHGHTVILMTRHPSQLDIFVRNLVSKHVHLERKAIGMKQYYWYKCVTSLDNPAGVSGVEAANWKPPKEAFKYYKSSSRHQKFKKKVPWAVWALIAVVGFVGWKSYGMFQVYSKATDSRIEQEAQKESVVQTMTEQTASSETAPFEHSDNLKPEDFVPTLPEKPESKPIYNTVRQVKTFEQIAGCIDGGKSDCTCYSNQGTPLKEITKIMCKEYVKNGLPFNPYKDERQRTEQAAQSAKADKPQVLVMGGKP
1653424..1653435                   attR                                                                                 N/A                 TTTCGGGTAATC

#### region 6 ####
1658298..1658822                   PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; NgFC428_01708; phage(gi410491500)     8.90e-47            NeisseriagonorrhoeaeMPISIRRNLSDGTTHKPLIITPDTTQRHDMDTPVYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKSLKRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWQELDALVGQHQVSWTWVKGHAGHAENERADDLANRGAAQFS
complement(1659153..1660115)       PROPHAGE_Shewan_MR-1: IS110 family transposase; NgFC428_01709; phage(gi24375433)     5.98e-09            NeisseriagonorrhoeaeMRNAVGLDISKLTFDASAMVGKTEHSAKFDNDSKGLDQFSDRLKSLGCQNLHICMEATGNYYEEVADYFAQYYSVYVVNPLKISKYAESRFKRTKTGKQDAKLIAQYCRSAQESELVKRQKPTDEQYRLSRMTAAYAQIKSECAAMKNRHHAAKDEEAAKAYAQIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIPAIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPGFIKRLEEKKKPKKVIIAALMRKLAVIAYHVHKKGGDYDPSRYKSA
complement(1660625..1660984)       hypothetical protein; NgFC428_01710                                                  N/A                 NeisseriagonorrhoeaeMIHKPRYIKIVDENGDFTRVLRLHKFPDTSKVFYFEPMFWLKDGRLARKDSLFEVDYIYGADGCGFLPSNLTEFRKYCRKKHQKFKDDEVLVNRYAVDFLGAKEPPYDDRHVTSVKYFV
complement(1661105..1662190)       PHAGE_Ralsto_p12J_NC_005131: ORF7; NgFC428_01711; phage(gi156535142)                 3.88e-13            NeisseriagonorrhoeaeMIYLFTGNMGAGKTPRVVSMILNNEDGLFKMELEDGTEADRPLYFCHIDGLDKRKFNARELAEGQIMSAPLRDVIPEGAVLIVGEAHYTYPVRAAGRPVPPYIQELTELRHHGHTVILMTRHPSQLDIFVRNLVSKHVHLERKAIGMKQYYWYKCVTSLDNPAGVSGVEAANWKPPKEAFKYYKSSSRHQKFKKKVPWAVWALIAVVGFVGWKSYGMFQVYSKATDSRIEQEAQKESVVQTMTEQTASSETAPFEHSDNLKPEDFVPTLPEKPESKPIYNTVRQVKTFEQIAGCIDGGKSDCTCYSNQGTPLKEITKIMCKEYVKNGLPFNPYKDERQRTEQAAQSAKADKPQVLVMGGKP
complement(1662200..1662490)       membrane protein; NgFC428_01712                                                      N/A                 NeisseriagonorrhoeaeMPLLSGLIPLLGILLKMLIVRIILATGLTFVTYAGYLAALEKFKGYTSNAINSMPSDILNLLLISGFGQGLGCLFGAFSFFIGMHAFKKLTFVFPG
complement(1662491..1663285)       virulence factor protein TspB; NgFC428_01713                                         N/A                 NeisseriagonorrhoeaeMDAKKPEEILSLKVDADPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVAATFGRDAQGNTTADVQVIPRPDLTPASAEAPHAQPLPEVSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQPGTSPDSPAVPDRPNGRHRKERKQGEDGGLSCDYFPEILACQEMGKPSDRMFHDISIPQVTDDKTWSSHNFLPSNGVCPQPKTFHVFGRQYRASYEPLCVFAEKIRFAVLLAFIIMSAFVVFGSLGGE
1663625..1663909                   phage associated protein; NgFC428_01714                                              N/A                 NeisseriagonorrhoeaeMKLLAALIPLLMSVAGRILTALGLMAVTYAGVDRLAAHFQQAITHSITGAPQAMLQLFYISGGGTVLNILFGAIAFILSFKQMTKLATSIGKKK
1663910..1665097                   PHAGE_Ralsto_p12J_NC_005131: ORF7; NgFC428_01715; phage(gi156535142)                 7.64e-24            NeisseriagonorrhoeaeMAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGVRRKVFTNIKGLKIPHTHIETDAKKLPKSTDEQLSAHDMYEWIKKPENVGAIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVKRHYHIAANKMGLRTLLEWKVCADDPVKMASSAFSSIYTLDKKVYDLYESAEIHTVNKVKRSKWFYALPVIILLIPLFVGLSYKMLGSYGKKQEEPAAQESAATEQQAVLPDKTEGESVNNGNLTADMFVPTLPEKPESKPIYNGVRQVRTFEYIAGCIEGGRTGCTCYSHQGTALKEVTELMCKDYVKNGLPFNPYKEESQGQEVQQSAQQHSDRAQVATLGGKPQQNLMYDNWEERGKPFEGIGGGVVGSAN
1665312..1666256                   PROPHAGE_Escher_CFT073: transposase; NgFC428_01716; phage(gi26248352)                3.32e-09            NeisseriagonorrhoeaeMNIIGPDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIKGNRIRKVYIGMEATGIYYEKAADMLSSYYTVYVINPLKINDYGKSRFNRTKTDKADSNLIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLQQQQKQIKNRLHSTEEDFIRNIHQDLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIGKDTASVLYAQLTEKHFKTANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINNLKKAGKPKMVIIVAIMRKLAKPAYYIVKTGQPYDAERH
1666559..1667098                   PHAGE_Pseudo_vB_PaeS_PAO1_Ab18_NC_026594: putative baseplate hub subunit and tail lysozyme; NgFC428_01717; phage(gi764160573)     1.57e-50            NeisseriagonorrhoeaeMTELPWIAEARRHIGLKEIPGAKHNPTIVQWLKETGGFPGAAKSWYFEDETPWCGLFVGHCLGKAGRAVIRDWYRAKAWSMSGLTKLEAPAYGCIAVKPRRGGGHVFFVVGKDAEGRILGLGGNQGNMVSIIPFDPADIDGYFWPSKLIGGKAVPSSPAEGRYRLTAAAATAKQGAGEA
1667099..1667443                   PHAGE_Entero_vB_KleM_RaK2_NC_019526: hypothetical protein; NgFC428_01718; phage(gi422936900)     2.32e-09            NeisseriagonorrhoeaeMIGALLKNWKPLLILSAIAFFAVSWQLDRAAQYRRGYGAAVSEVSERLKAAAVEHAEHARKSSAAYQAQKAAREEKERVRYVQTLKIIEKPVYRNACFDADGVRELNAAVDDGG
1667382..1667600                   PHAGE_Nitrin_1M3_16_NC_024217: hypothetical protein; NgFC428_01719; phage(gi643655216)     8.31e-05            NeisseriagonorrhoeaeMPVLMLTACANSTPPLTTAVKPPADLVRPCPKLPYLEGNTGADVLPWSLQVIGLYKDCKARHGALVRALGAD
1667960..1668340                   phage associated protein; NgFC428_01720                                              N/A                 NeisseriagonorrhoeaeMPLKFQPRERSVIMCDFRGYEEPEMVKKRPVVVIARNRHNGKLVTVVPLSSTEPVPLADCHHKMSENPLPDKPHIQCRAKCDMTATVGLARLDRYKPKGRDRCIPIISEEDFQAVKTAVAKAFKLY
complement(1668545..1669387)       PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NgFC428_01721; phage(gi31544021)     3.60e-41            NeisseriagonorrhoeaeMQNTISVFSFKSQNVRTQILGAEPWFCLGDVAEILQIQNARQLPLKDQGIQKSSVATKKGNQELLFINEPNLYRVIFRSRKAEAVKFQDWIFEEVIPQIRKTGGYQITPKTTADDRTGLRRAVAALAGCKGIDYSSAYSMIHQRFNVEAIEGIPADKLLEAVAYVHALTLHTGLAGEVPDREPLPAPQPALPISGNALADIAAMVYYGTWMIESGKDVSLPLKQLGCKQAVTMWTVWHETRPILKRSAAALEVLRGYADKDASGRIAACLEGIYGKAAVR
complement(1669886..1670062)       putative phage associated protein; NgFC428_01722                                     N/A                 NeisseriagonorrhoeaeMNPTKQSKKSYESKRVLKHVSFNTEKEANLLEFSNNLDFSKWVKEKLKHELELEKLKK
