gi|00000000|ref|AP018381.1|  Neisseria gonorrhoeae FC460 DNA, complete genome. 2215151, gc%: 52.41%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
442296..442307                     attL                                                                                 N/A                 TGCCGTCTGAAA
444806..444817                     attL                                                                                 N/A                 AAAAATGCCGTC
451767..452219                     PHAGE_Erwini_vB_EamP_S6_NC_019514: deoxyuridine 5'-triphosphate nucleotidohydrolase; NgFC460_00460; phage(gi422935886)     1.54e-63            NeisseriagonorrhoeaeMNIEVEMKVLDERMADFIPAYATEGSAGLDLRACLNEEVVLQPGGTLLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNRSSEPFTVKPFERIAQMVVVPVVQARFKRVEEFVGSSRGEGGFGSTGSH
452297..453484                     succinyldiaminopimelate transaminase; NgFC460_00461                                  N/A                 NeisseriagonorrhoeaeMNTLLKQLKPYPFARLREAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLRELEKYPLTAGLPELRQACANWLKRRYDGLTVNPDNEILPVLGSREALFSFVQTVLNPVSDGLKPVIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWERTKLVFVCSPNNPSGSVPDLDGWREVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQSGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQHASIAAWNDEQHVIDNRRMYQEKFERVIPILQQVFDVKLPDASFYIWLKVPNGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAETIVSLYR
453795..454574                     Protein of uncharacterised function DUF328; NgFC460_00462                            N/A                 NeisseriagonorrhoeaeMFFVLSPAKNLNEKDPCPVSEFTQPDLLAESEILMRQLRELAPQQIAELMHVSDKIALLNAERNAAWHTPFTPENAKQAVFMFNGDVYEGMDANTLNTNQIQYLQGHVRLLSGLYGLLRPLDLIQPYRLEMGTSFANLRGKNLYEFWGGIITNLLNDTLAQAGSNTLVNLASQEYFKSVNTKKLRARLITPIFKDEKNGKYKIISFYAKRARGLMVRYAAEHNITDPEMLKNFNYEGYAFNDAASNESEWVFMRSEQIK
454657..454747                     tRNA                                                                                 N/A                 GGAAGCGTGGCAGAGCGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTTGATAGCCCTCCGTGAGTTCGAATCTCACCGCTTCCGCCA
454825..454913                     tRNA                                                                                 N/A                 GGAAACGTGGCAGAGAGGCTGAATGCAGCGGACTCGAAATCCGCTGAGGGTGCAAATCCTCCGTGGGTTCGAATCCCGCCGTTTCCGCC
455105..456298                     PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; NgFC460_00465; phage(gi16130540)     1.50e-58            NeisseriagonorrhoeaeMAKIITPLSANQVKNAKPRDKLYKLSDGGLALWVYPTGGRSWKLSFVQDGRQQTISLGRYPDFSLTDAREWREEVRRKRAHGENVVNKKVRADFAFEKVARDWFVRWSKGRSEKYAGQVMRNFERWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKMVFAFAVGSGMMEINPVAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRVHIHPVTRFCIYWLLLTMTRIREAALMEWSELDGEVWRIPAERKKERRGHDVPLSRAMRWVLDQARGLNVNGRFVFESVNFQGHINKESPRVAMRRSGLDTTAHGLRSLARTYLREVLKVYNDVAEKLLAHSLGTRTQTAYNRSELWEERKDAPERWGNDVLRLADNGK
complement(456654..456923)         phage associated protein; NgFC460_00466                                              N/A                 NeisseriagonorrhoeaeMESSDVQGRMETLAFATAPKKGGIRKSGFGRVILIKSGHIVIHNADGDSFATGYGVIAADIVSPDLKTDFDIFFPPESLLRYKKIGKKK
complement(456981..457121)         hypothetical protein; NgFC460_00467                                                  N/A                 NeisseriagonorrhoeaeMNRDGSGCGNFGGLGKGYAEYERRNCRMPSRKKAETRTNQNQRKED
complement(457118..457801)         PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; NgFC460_00468; phage(gi100005)     1.38e-24            NeisseriagonorrhoeaeMDKEKVLDKIKKCLALGRSANEHEAAQALRQAQALMEKYKVNAEDIALSKVSEQKADRKMAFKLAGWQWGVANMIADIFGCKSYQRGKTMMFYGIGNRAETSAYAFDVVYRQISADRRKFLKTCRAGKPSHRTYLADRFCGGWIASAWETVKKFEMSDEEKAIMDGYKKKEYPDMAEARTRDAKSSILQGSKMEYEALTRGMESGKQVKLHYAVNGTGFVKQIGGQT
complement(457812..458348)         PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; NgFC460_00469; phage(gi970580043)     3.63e-13            NeisseriagonorrhoeaeMQTVATKPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLVAAKVRRYCGEHPGVFDGAAGSRQLERYIKPSEFHAVEIQPEACKALLQNYPAAAGNLGRRKQKKPRVRKRISPSRMARPNRKQSERRMGKGAKLKYRTN
complement(458459..458674)         phage associated protein; NgFC460_00470                                              N/A                 NeisseriagonorrhoeaeMSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
complement(458726..459217)         PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NgFC460_00471; phage(gi374531698)     2.27e-19            NeisseriagonorrhoeaeMTALTLYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEEHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGRQVAGAKIEGRKNLQIR
complement(459214..459396)         putative phage associated protein; NgFC460_00472                                     N/A                 NeisseriagonorrhoeaeMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
complement(459536..460222)         PHAGE_Pseudo_RIO_1_NC_021300: putative ssDNA binding protein; NgFC460_00473; phage(gi508178031)     1.89e-10            NeisseriagonorrhoeaeMSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKHPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGQTEYPQGNAAPAEDIEDDIPFN
complement(460291..460452)         phage associated protein; NgFC460_00474                                              N/A                 NeisseriagonorrhoeaeMSFHPETAYNGGGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
complement(460449..460727)         phage associated protein; NgFC460_00475                                              N/A                 NeisseriagonorrhoeaeMKTRNIAFKFAVLAAVLAAGYAFGFAKGGGSRTAKGKPAGIAAMRMALAQKQAEVAELSAEIWLEERHLNADEEEAGCRRVHGDAEVPGGKE
complement(460880..461212)         phage associated protein; NgFC460_00476                                              N/A                 NeisseriagonorrhoeaeMKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESGLIEIAKKSAREFVRDADGEPYAQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
complement(461353..461640)         hypothetical protein; NgFC460_00477                                                  N/A                 NeisseriagonorrhoeaeMSYLDQPLKHGYGNGNGSGNGDGYGNGYGKGYGSGYGNGKGDGSGSGYGNGKGDGNGSGNGDGDGNGNGSGNGSGNGDGDGNGNGSGNGSGYGNG
complement(461637..462113)         PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; NgFC460_00478; phage(gi197085698)     1.05e-32            NeisseriagonorrhoeaeMEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
complement(462146..462346)         hypothetical protein; NgFC460_00479                                                  N/A                 NeisseriagonorrhoeaeMNELISRINRFGTRAKDGQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
complement(462544..462957)         hypothetical protein; NgFC460_00480                                                  N/A                 NeisseriagonorrhoeaeMIHLNVHYCDEIIRHAENDKYSLIGIFPDICHIPTPQAILGRLCLSVSFSAEGMDIQTMKTGQIFLEIVRNDDVISALEIPSYDGSDTEENVSFMLHQTISGLPVSDNDRIYVRMTTHNHILSESRPLSFSWLPYHS
complement(462954..463454)         PHAGE_Clostr_PhiS63_NC_017978: gp25; NgFC460_00481; phage(gi388570654)               3.37e-06            NeisseriagonorrhoeaeMKNCTPTNGTWFKMGATLTVAVAACTVSTPTSAIPVTHIKCLRINGQIKCVKPISPNTTPAAEHIEHVRKNPRRKAAMDRAAARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYMEQA
complement(463432..463869)         hypothetical protein; NgFC460_00482                                                  N/A                 NeisseriagonorrhoeaeMELTVHFNAEQDLDRLFEKDEEAVGYLENVIAMIQADSAIFDGLYKNRYFREYGEPIGPIDLEVKPILSLWGKDIKVLRVRFDSEEAAGYRIIYAPCHEKQPNGTYIRRIDILAVVNKKTDEFDYQAEHPITKRIIKDYEELYSN
complement(463982..464644)         PHAGE_Salmon_ST160_NC_014900: C2; NgFC460_00483; phage(gi318065925)                  8.51e-22            NeisseriagonorrhoeaeMFSGEQLGQAISEAIKRKNVSQKEVADHFGVKQPSVSGWIKNGRIDKKHLDKLIDYFSDVVTPSHFGIETFRVLKSNEQSSIRFPRLNAEATCGAGTINDHYIEVVDYVTVAAAWAREKLGGNLNKIQVITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLKAKRLQSTVGGGLMIISDNSSYRTETVRGEDLNAVRIIGRIRGAWRLSQF
464773..465003                     PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; NgFC460_00484; phage(gi100049)     3.86e-10            NeisseriagonorrhoeaeMSIQKAVDYFGNESRLARAIGVKQPTVWAWNKKGTPPPIIRCVQIEKLTGGAVNRKDLRPDDWHLIWPELAGDQPK
465083..465238                     phage associated protein; NgFC460_00485                                              N/A                 NeisseriagonorrhoeaeMKKQDRNRLSKKDRRLIKKAMLKAAAKGCDEVYKIAPGLKDGFELLGKQPD
complement(465215..465403)         phage associated protein; NgFC460_00486                                              N/A                 NeisseriagonorrhoeaeMPSDLSFILAKELIRSGSIRLSGSTAKGQAGELAVFIRTLHQKPEESEPNTDDEYLIGLLSK
465576..465803                     PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; NgFC460_00487; phage(gi970580066)     7.65e-05            NeisseriagonorrhoeaeMNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTQLAARITDLEGRGFVFAKPKYKVGNCKNPVAHYSIAKSGIEP
465800..465937                     Uncharacterised protein; NgFC460_00488                                               N/A                 NeisseriagonorrhoeaeMSREQRIRGARLPVSAYMQAEGAGKAREALDGRVEKVKGVDDEAV
465921..466985                     PHAGE_Haemop_Aaphi23_NC_004827: putative DNA replication protein O; NgFC460_00489; phage(gi31544014)     1.74e-37            NeisseriagonorrhoeaeMMKPSESLRAAGRPIAYYPKLAKPLGGVNAAILFGHFFYWNDKTQYESGIYRTAEEIEIETGLSVQEQRTARAKLRERGVLIETEKRIEHRIYYKLNLDAFDDLMLQHSGGGESTAPKCNINSPELQNQHSGGGESTAPKCNINSPELQNQHSGSEESTAVIRTEDLTEDLAVYTPLPPNAGNGKGGLNADAFVSADAETCGRETGEPTSPKAESDSNGNGGLSGKPKNANVPRRRKTHGVPLQEIADLYNEVLGGRLPSVQVLNDTRKRAIANRWCEMLGTAAPNGKVRFGDKETGLAWFAGFFRKVAMNPFWMGENQTGFAVGFDWIFKAGNFVKILEWHPPKTNQAARGRA
466982..468343                     PHAGE_Marino_P12026_NC_018269: replicative DNA helicase; NgFC460_00490; phage(gi399528354)     1.49e-70            NeisseriagonorrhoeaeMNRIEETEAVQSLASVGAEQNILGGILIEPTAIARCAILTPEKFYQAQHRIIFRALLDMAAANEPIDIITLNDKLEARGEAENAGGLAYLIDLNQNTPSAKNISRYVGIVNDRFVERGLLKASAAIEKIAVSKDGGTVAEKLSKAADELAAAGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGMTGGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNIPMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGLDLLVVDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIRGSGAIEQDANIIIMPHRESYYDGNENPSIAELIIAKNRDGETGTVVCGWKGQFMKFEEEPDLAWQAPKHDEYDPYSV
468360..468590                     putative phage associated protein; NgFC460_00491                                     N/A                 NeisseriagonorrhoeaeMRETCFYCNHADFKTNTGTPVRGFAKCAKARNAEEKATYYPRTNPCAAGAFQTASGAAVAKRTAVLGEYPPAMRRI
468682..469176                     PHAGE_Mycoba_Gengar_NC_031035: hypothetical protein; NgFC460_00492; phage(gi100045)     2.41e-08            NeisseriagonorrhoeaeMTVRNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRADAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAGGGI
469353..469502                     phage associated protein; NgFC460_00493                                              N/A                 NeisseriagonorrhoeaeMDTLLSIITALSFAGAATLAVWLLVEAADAVLRRKRDGKGEDDFDGFGY
469531..469812                     putative phage associated protein; NgFC460_00494                                     N/A                 NeisseriagonorrhoeaeMAEEMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
469803..470183                     PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NgFC460_00495; phage(gi148609431)     5.01e-08            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYKETVRRIAQGAGAMPSEGFVAVRLRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVAGGGLAVEVGELDEK
470450..470857                     phage associated protein; NgFC460_00496                                              N/A                 NeisseriagonorrhoeaeMNQQEFEFMNDLARAFERRYRDTRSLNRCLSIEGRYMGEEACPHKPEIGLRYGEDAMFLTLQAWAKVDAPQQEAVRISFGIGAKSQAAYEERLQAEIRRRGEQLLHLQTDLGLAAWYRAIRQAAGDDFDLLFEKV
470948..472108                     Uncharacterized conserved protein; NgFC460_00497                                     N/A                 NeisseriagonorrhoeaeMNAAAVSAVFKERIASHAEHVKKVAHICTTEETTKQALILPLLDILGFSAFDPNKVRAEYQADFPGAKSGERVDYALFCNGAPVMFIEAKSYTENLSNHCPQLSRYFNATPEIAICAITNGREWRFFTDLSNKNIMDSEPFLTVDVTMLNENDMAQLYQFRHDKFQPDALRSLAEESIYLTAFTESITESLKEVDLDFVRYVAGRANIQRQFTQRYLESIRHIVKQAVQNTVSSMVVSGLSAPKVQEEAAPVEKEQEDPTAPIIDPENNKIVTTYSERRLFDLVKSILPDDASIEAKDTESYFGVLVDGKSNRWILRYFDNKQRPSVIFPIELEESDISNIERCGLEVSGNQVIIDTPENLLRVVWLVIDSYRFCCDDENFKRKPK
472389..473258                     PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NgFC460_00498; phage(gi31544021)     7.36e-58            NeisseriagonorrhoeaeMNVIQSFNFNTTSPVRAFEKDGLTWFVAADVCKALEIQNPTQALEKLDDDERSMFNIGRSEIHGGGGNVNIINESGLYILILRSRKAMEQGSTAWKFRKWVTSEVLPTIRKTGGYQVGQKTTADDRTGLRRAVAALVGRKGIDYSSAYSMVHQRFNVESVEDIPAGKLPEAVAYVHALTLHTGLTGEVLDREPLPAPQPALPISGNALYDLAVAVSYGARAIQMGRDVSLPLKQLGCRQAVTMWTVWAETRSRLKAAANALEALSAHADAEHAEKIRPILPEIRNLSAV
473551..474000                     PHAGE_Entero_Sf101_NC_027398: terminase small subunit; NgFC460_00499; phage(gi849122263)     2.18e-31            NeisseriagonorrhoeaeMSGTKRKLGRPTDYTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYARAREKQADYFAEEIIEIADSAQAESAAVSKAKLQIDARKWAASKIAPKKYGDKTELDVKSGDGSMRAAVRLDAEEYRKIAEDVLRRV
474062..475483                     PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; NgFC460_00500; phage(gi423262000)     0.0                 NeisseriagonorrhoeaeMALGQFDDVETSVIRSLSSASLYMFTRRMFYQRRGYVWQRANHHAPICNALERVFNGETKRLIINIPPRYSKTEIAVVNFIAWAMGRVPDCEFIHASYSAALAVNNSVQIRNLVQHEEYRAIFPDLALAGESGHHWKTTAGGVMYATGAGGTITGFGAGRHREGFGGCIIIDDPHKADEARSEVRRQNVIDWFQNTVESRKNSPDTPIILIMQRLHEKDLAGWLLDGGNGEEWEHLCLPAIQEDGTALWPEKHDIETLRRMEQAAPYVFAGQYLQKPAPPDGGTFKPDNLQFVKALPAGNIRWVRAWDLASTANGGDYTAGGRLGVTEDGRYIIANVVRGRYGADERDRILRNTAQKDGVKTKISIPQDPGQAGKSQTLYLTRQLAGFSVSAGPESGDKVTRAGPFAAQVNIGNVMVLDDGTWDTDALIAEMRMFPNGRHDDQIDCLGRAFGELLDTRTGMIDFLRSQVEAVK
475480..477627                     PHAGE_Bacill_Riggi_NC_022765: minor head protein; NgFC460_00501; phage(gi568190979)     3.41e-11            NeisseriagonorrhoeaeMSKKTPLSQGFIARVAAGVRYAFTGNADGWFDAGEPPAPAAQQAEGRRFDYEPFYNVGHSKPREREAVGFAQLRALADNYDVLRLVIEARKDQMECLKWTIQKRDVESTEDDESQRKDRKVDEAVAFFRSPDKEHTWADWLRILLEDLFVIDAPCIYPRKTLGGGLYALEVMDGATIKRVLDNTGRMPLPPDTAYQQILHGMAAVDYTADELIYRSRNNRSYKVYGYSPVEQIIMTVNIALKRQVHALEYYTAGSVPDALVGVPETWSADDIRRFQEYWDLLLSGETAQRRKMRFVPGELSRNFRETKQPPLKDVYDEWLARVVCFAFSVEPTPFVAQVNRSVAETSREQSLSDGMGSLKNWVKALIDDVLARYMDMAAYEFVWKGEESLNPKEQAEIYAIYKNAGILTADEIRAELGKEPLPGQGQPEPDKQDGRKPEEPPNQGAEKLGKSESPMSEDESAALIEAYLLTRIDGLAEQIAALIEGAAVDWQAGDLAAELSRAAGVVANGLDFGDWSGLSDVVEPIIRRVAEDGAVAALLRVMPEPAAGMVTNIRSRAVKWAHERAAEMVGMKRAGGGLVRNPAAEWQITEGTREMIRAQVAEAMRNGDSVQELAGRLKESHAFGNARARTIARTETAMADGMGNLIGWEGTGLVAGKQWITAKDDKVSDVCNANGGMGVIGLHEPFSHGALTIPGHPNCRCAVVPVLAGDMPES
477695..478852                     PHAGE_Strept_Jay2Jay_NC_029098: capsid maturation protease; NgFC460_00502; phage(gi985760259)     7.30e-08            NeisseriagonorrhoeaeMTKLYAQIAKTEAQDDGTVKVWGYASSEAVDSDGEVVAAEAMKAAIPDYMKFGAVREMHGSNAAGTAIEINVEDDGRTFFGAHIVDPVAVTKVKTGVYKGFSIGGRVTARDDLNKSQITGLKLTEISLVDRPANPDAVFTCFKADKPKDEAGAADKDGKPSDKPTEEEDENPKDGDKGPKTEDKGDKDAGKKDEAGKSASVNLSESEIAALKAVLAKADKPKGGTAAKSMYQVKSPADVLMSLKWLVEDASYDNIDEAVTAQIKESAAGLAESLKALAASEADKPADGLAAKAGKSGDLAKAESADELAKAQDALKKSNDALAKAQAEIESLKKQAVPPKGSTKAISKAEDNGEDPLKGFQPIVKNDGTLDDVATLIKAKQTGRL
478893..480392                     PHAGE_Thermo_THSA_485A_NC_018264: hypothetical protein; NgFC460_00503; phage(gi397912636)     2.98e-32            NeisseriagonorrhoeaeMNVNQLTQETIELMKSAQAGGGPPDKGFTQPAGFTAGLQTYDLSAPSQKLYPVLTPLRNRIPRVGGGRTIGSNWKAVTNINVGNQRAGIGEGRRGGVINHETVERNAQFRAIGLENQVTFEADYAARGFEDVKALAVAQTLQATMVAEEMILLGGNTSLKAGVTPTPTAVVSADAAGKISVSTLSVICVALGLQAYWDVAGANNGATGQSPNIKTAQVPAKITRRNADGTTDTFGGGSARKSAAASVSGIEAGKKVTAVIPAVRGAVAYAWYWGAAGSEKLGAVTTAAKVEISADAEGTQTAASLPSEDNSTSILEFDGLLTQIALPDSGAFWSDNKGGGLTSDNAGGVYEFEEAFAHFFTRYRLSPDTVYVNARDLAALTKLIIGNSGAPLIKLNVDVNNTANIRAGVVVGSYMNKITGDDLNIVVHPNLPAGTYLFYSSRLPAYVQGVGNLLQVRTRQEYYQIEWPLRTRMYEYGVYADEVLQGMFMPAFGMITNVG
480444..480755                     putative phage associated protein; NgFC460_00504                                     N/A                 NeisseriagonorrhoeaeMTVKLKAPEGFTDVSFGSQSYAADENGIVEVPSEAAEFLYQFGFGNVASEPAEGPEKAKRGRKPKTGQPAGQSEPAEAAEPAEAEAAEPAEAEAEPAEAEKAE
480758..481288                     PHAGE_Strept_phiSASD1_NC_014229: gp29; NgFC460_00505; phage(gi298103494)             5.78e-07            NeisseriagonorrhoeaeMAAPVSLEEFKQRIGVEHDRRDDFFLSVIDGVSAAAEAYIGRSLLAADYVGRYDGNGKDRIVLDNYPVLSVSSVKINGADAGGWEFDNWLLMRPEGFARGLKNVEVSYRAGYERMPADIREAVMIIAVQRVNEIEGKGVRSKTLAGETVAFSTFGNSGGMPPSAFAILNEYKRKGV
481288..481770                     PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; NgFC460_00506; phage(gi481019160)     3.58e-07            NeisseriagonorrhoeaeMLKMEFIGGGILAAVFKAYAADVQDAVVKSVGRSALRLQSEVVLNRLSGRVLRVRTGNLRRSVHQRVNVSGNVVSGEVDTNVRYGIAHEYGFAGSVNVKASLRQVRQAFGKPLKPPRYVRVRAHTRDVKLPERSFLRSALRDLTPKFADDLQKSIGKVLK
481767..482195                     phage associated protein; NgFC460_00507                                              N/A                 NeisseriagonorrhoeaeMNREAVYSALWAKLDALDGFVTKSRKLVHWNDVKRYDQPALFMAQGDMQALTLTGRETKWILRADVYLYVQTAGQPPAPVMNPLIDAVCNAVNAVHPVTGKTDLTADGADIEYCRVEGTVETDEGTLGEQAVCIIPIVICAA
482221..482994                     phage associated protein; NgFC460_00508                                              N/A                 NeisseriagonorrhoeaeMQLTFGSGEVFAQMITDAYGNRVQNATPVRIMGLQEMSVDLSAELKEFYGQNRYPLAVAQGKVKVSGKMKGALINGLTLNTLFFGTEYATGTMKALWAETTGKVLDGDNYSYLQAAAPGGGKFAEDAGVMGQDGTAYIKVASSPKQGQYTVSDAGVYAFNSSDKGKTVYPSFTYTQTMPPAKKIELTNMATGNTPTFKMRYLTQFKGKKALLELESVTSGKLGLFSTKNDDFSVPEIDFTASTDEAGFKIGTLWIQE
483055..483384                     phage associated protein; NgFC460_00509                                              N/A                 NeisseriagonorrhoeaeMTVRIKGVTVELNGADYVIPPIALGALEQLQERIGSFDGNAADAGQISTVIDCAHAALKRNYPDLTREEAADLIDIGNMNEVFAAVMDVSGLKRREQEAAQAGEARAAD
483396..483662                     phage associated protein; NgFC460_00510                                              N/A                 NeisseriagonorrhoeaeMIAHVCASTGWTWDYVADNLDLPRIKHLNEYWREHPPVHILAASYMGVKPSSGSVQSEADEAEAVGMLGGGELSEDEFDALLKAKGII
483662..484261                     PHAGE_Caulob_rogue_NC_019408: hypothetical protein; NgFC460_00511; phage(gi414088956)     6.40e-05            NeisseriagonorrhoeaeMGNAVFPEFPGLKWGRKKTAVWSTGTQKSASGREFRTAYYTYPQWRFSLSFEVLRTKASVNELEKLAGFFNARKGSFESFLYEDPADNAVTDQPVGNTVQGVARYQLVRSMGGFIEPVSAVKERPAVKVGGTALAYGRDYTVTDKGVLVFNTPQPPGRPITWTGGFYFRVRFTSDTVDFENVLGSLWAAKKIEFTSVKL
484258..485112                     PHAGE_Caulob_magneto_NC_019407: putative tail protein; NgFC460_00512; phage(gi414088603)     5.84e-20            NeisseriagonorrhoeaeMKAATKELIDLLHGGDEFQMADLYTITLSGGRVLRHTGADMPVVWDGQAYGAHELVIKRGATRTAVGLEVDSNTLQISAAPDYRLEGLQWAEAALGGVLDGARVRIDRVFFDAGLRPVGAVNIFSGRVSDVSGGRSSVKVDVKSDIELLNVSSPRNIYQAGCMRTLYDDGCKVNREKFTVNGRVTENSRTGTVLKHNLTQPDGWFSQGVIKFAGGRNAGLSRTVKAHGGNTFELALRLPYPPQAGDAFKVYPGCDKRRDTCKDKFDNIVHFRGFPFIPSADTVV
485114..485545                     PHAGE_Roseob_1_NC_015466: phage cell wall peptidase; NgFC460_00513; phage(gi331028137)     1.85e-13            NeisseriagonorrhoeaeMPSETDLRARIVEEARSWLGTPYHHHAMVKGAGVDCAMLLVAVYGAVGLLPEGFDPRPYPQDWHLHRDCERYLGFVTQFCRETESPQAGDIAVWRFGRSFSHGGILAGGGKVIHSYIGRGVVSDDIGQAELIGRGVRFFTFSF
complement(485573..486019)         PHAGE_Pseudo_phiKZ_NC_004629: ORF114; NgFC460_00514; phage(gi29135050)               4.55e-17            NeisseriagonorrhoeaeMKPLNFSGGSLDCLRQFPENAKQAAGYQLQEKPENRGRRFGIGGKTLQQIDSGKEIMESQTFASVFDALCDTPAEAANMRLRAGLMMHIADTVRENGWTQKQAAEHCGLTRPRINDLLNGKIDKFSLDALVNINAGLGQCISLSFAPA
486091..490236                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: central tail hub; NgFC460_00515; phage(gi658311483)     4.29e-11            NeisseriagonorrhoeaeMGGKSSTVTSAEERILSLQVQRSSQGLTLPVIYGRTRVAGNLIWYGDFVTIEHKTTTRRGGKGGGGVKQVGISYTYEAAVMLALCEGEIQGVGRVWRDKEKFDSPAQLRLTLMRGGDEQPLWTHLQQAKHQGQALNYSGTAYLCSPNYELTKSAQIYQHNFEVIGKSGYSGNIPDANPREIVLDLLTNQRYGCGFPSQNIGDTDRYSNYCRAVGIFLSPAYTEQGEAQRNISELLEQTNSAAVFSQGRLKIIPYGDGSHSGNGAVYVADNKAAYDLTDDDFIVSGAQDPVKAGRKTNADAFNQIQVEYLDRDNDYNVAIAEAKDQANIEQYGLRPKDAVRMHGICDAKVAQKVAQQLLQRALYVRNEYEFKLGWKYCLLEPMDIVTLTDAGLGLNKTPVRITEIEEDGEGVLSVKAEDCPAGVYTVSEYPTQPSSGYSADYNVSPGNAHVPVIFEAPLQLTGGEPQIWLATAGGGMWGGAEVWVSADGDSYTRVGAVNRKARFGALTADLPDGAVFDRTNTLGVEISAGQLTGGTEQDSRDLLTLCYVDGEFLAYADAELKGVGRYTLGNLTRGAYGSAVNAHAAGSRFARIDEALFKYAVPRNWIGRTVWVKLVSYNVFGGGIQDLAEVPAYSYTIEGAPLGQIQNLRLTSSWAYGKEAVIAWDKLDGADTYDVEIYAGGSRRRLRAVDGIVDNSYTYTQADMKADGGQVRGIVFKVRGRAVTGKTGNWAQIAAQNPQLQALQGISIDSGLRQAFFTCQKPDEEDFAGIIVWVCENAACPAADANKAYDGAETFITIAKCGGKPLEKGKTYYLRAAGYDSFGKDNLKISGSISFTVYDVSATDLSESSLNKALRDKINLIDGNGAGSVNERVEAVRSTADGNAAAVQTHARSINGLEAQYTVKVDANGKVAGFGLATTPKNGTPESKFIVNADRFGIGAAGKADVFPFVVDTQKNRVGINGELVVNGKAVVDKLNAGDIHGGKIAADTLDANRLKAGSVTAREIGAAAVTADKIGANAVTADKIQVADLSAVSSNLGSITGGSLNIGGGNFTVSSDGILTADNAVIRGRIEADSGYFNGTVRASSVEGDVLRAHRLRWTEGNVWVLDLDKDPLPRVLIPNFYVVSETFGNNRVQAKLLLNGGVLAPREVRETENYTNYIWRGRTFGRYEDLPPRARGVGDYTEQSGSRYRTRLEYQIQVIPAGKPVSLKLSLASHESVFSPFVSVSYLAQSDYEYKQLLGRMVWRTFAESFRYDSKKQVYLGGDRRVHDYQNQMYKHWNAYGGLLQLPDDIYGISFEYRPFTNADWSTMLAFDRSDKFVVVKKYRGHAPQQYSLFQEEFNTAVPKSNLLFFVEHWWQYIELRNIRVLIPESRENEVWQVG
490348..490653                     phage associated protein; NgFC460_00516                                              N/A                 NeisseriagonorrhoeaeMIEDKKIVALNFAVEDGMTGASAAYHVVEHIGADYRNGYVTATLNGYVSENAFKSGKRYLLARTLDFQETDITAPDPGWVYRKALEGAAGIPKDAQPVYAE
490724..491194                     putative phage associated protein; NgFC460_00517                                     N/A                 NeisseriagonorrhoeaeMLRVLLNRRFLPAGFQAWLFGTATRVLEAVSGLGLSGYAAVFALAPDEIYAWRIYYKFQDIPEAWTVGVLAAAGLLQTALLFARGVRACVASAYLLLFSGFVWFLVSVAFWGAYPPLNTGMVVPPLLAFFCALAGNNALRFLFSAQKSRGLADEGS
491195..491527                     phage associated protein; NgFC460_00518                                              N/A                 NeisseriagonorrhoeaeMGFLQFGLLFAAAGGVLGAVWASLQERGRPVQAVLEAFISAIAAAAAAERFVPLDQAWTCAAAGVFAGMMTGHALDTVRALAPKVLRGYLGGLAEKLTGVKDGGSSDGKD
491722..491841                     Uncharacterised protein; NgFC460_00519                                               N/A                 NeisseriagonorrhoeaeMLLLLEKYRSVRLFLRAVLCAAPLTALIWKPADILNALK
complement(491896..492243)         PHAGE_Strept_EJ_1_NC_005294: transcriptional regulator; NgFC460_00520; phage(gi39653708)     1.81e-11            NeisseriagonorrhoeaeMYIPERGDIFHLAFDPAAGTEMKGGHYAIALSPRAYNRATGLVYACPISQGRAAAARSGGMISTLLGAGTATQGNVHCHRMKALDWKIRRAAFRETVPDYVIEDVLARIGAVLFD
complement(492243..492479)         pemI-like protein; NgFC460_00521                                                     N/A                 NeisseriagonorrhoeaeMLRLQKWGNSAAVRLPARLLTALNAKIGDALETEIRNGELLIRPVKRYRLSDLLAETEAAPPRAEGWEEMPDVGQEGV
492686..493225                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: endolysin; NgFC460_00522; phage(gi658311460)     1.58e-63            NeisseriagonorrhoeaeMKELKWIEEARKYLGAHEKVNGKSNPVLLAMLQEMGNFNQEQKAWWKETDTPWCGLFVGHCLGKAGRAVIRDWYRAKAWSMSGLTKLEAPAYGCIAVKPRRGGGHVFFVVGKDAEGRILGLGGNQGNMVSIIPFDPADIDGYFWPSKLIGGKAVPSSPAEGRYRLTAAAATGAQGAGEA
493225..493383                     putative phage associated protein; NgFC460_00523                                     N/A                 NeisseriagonorrhoeaeMMNPTEFLKARIAEWEAKSKEAGGNADFKAFEFAESEIKNYKAMLKTYERPD
493367..493708                     PHAGE_Entero_vB_KleM_RaK2_NC_019526: hypothetical protein; NgFC460_00524; phage(gi422936900)     2.82e-06            NeisseriagonorrhoeaeMNGLIKNPKLIAVSVCAVFVAGAWQYDRAAQYRRGYGAAMLEVSERLKAAAVEHAEHARKSSAAYQAQKAAREEKERVRYVQTLKIIEKPVYRNACFDADGVRELNAAVDDGG
493647..493865                     PHAGE_Nitrin_1M3_16_NC_024217: hypothetical protein; NgFC460_00525; phage(gi643655216)     2.81e-06            NeisseriagonorrhoeaeMPVLMLTACANSTPPLTTAVKPPADLVRPCPKLPHLEGNTGADVLPWALKAAGMYNDCRARHGALVRALGAD
494206..494355                     phage associated protein; NgFC460_00526                                              N/A                 NeisseriagonorrhoeaeMNAEGFCEKQTACRPDGRRNAGDRADLKAFEFAGRELANYREMLKRYAV
494385..497429                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: tape measure protein; NgFC460_00527; phage(gi658311478)     2.93e-49            NeisseriagonorrhoeaeMSDLEAKVRITVENHTKQGFDSAAADADKAAEKMRSSGDNAAKGFKAAIDSMHETMRNLHADVKAGFEAAGNQAQQASEKVRAEVGKIGSGLSGLTKLLAGLATADFAKSVLDTADAMQSINSQVRQVTSSETEYLAVQQQLLDTANRTCASLESTANLYVSTSRALKDYGYTQQEILKFTEATNNAMTIGGVGARQQAAALFQLSQALGSGVLQGDEFKSISESAPILLDTIAEYMGKSRAEIKKLGSEGKLTADVIFKAISGASEKFGEQAAKMPVTMGQALTVFSNNWQSMVSKLLNDSGTMSGIAAVIKLIADNLNLVVPIVAGFAVAVAAAVAPTLALNLALLANPFGIIAVAIGTVVGLIAKFGDEIDVFGGGWSNLSDVIRAVWQIITETVGEAVGTVKSWFDGLTGRLNEGAGGWPSLFGRVMSVISSAIGAYVNVYINIFATGWMLIKEAANDMPQFFANLGKAIGNVFISAIERMINKAVGMINSMIDFANKAASMAGISGIGKLNKVRMGRMDDGGLGERIHDSLTKDRAGAMANAVRERAADIHEADALKGRGGGGHAKTARKKPGANQGGGKGGKSRSGGPGAAKDPMQAWEGEIKARKLAHREMQRETLAHQEWDLAREAEYWRAKLATVDANGKTGVKIREKILTLEDQLSKQSTEAKMNQAAEWEKLDKHKLEMEKDAADQALADGRISQLERLDLEIEFENRRYQIAYDALQERIALAEQDPAYSQAAIGKLKAQMGELGRGHERTQAKNEGKRENQRRKDAPNVMEMLQDGGRNVWQEAQQQMGQAFTAMLARAQNFRQAMNGFFKSMGQTFIQEMVTKPLTGLMRRMVEESAIYKMIFGTKETLETAAAAKTAATKATETTAVVSSNAVQAASGAAASQAHIPYVGPILAVAAMAAMMSAVMGLMGGGGSQTTTTTTRIPSAAGGWDIPAGINPLTQLHENEMVLPAEHAQTIREMADQQGGGSTVIINSTGGDFIHKNDLAKLLKQMKRDFKFV
complement(497489..497968)         phage associated protein; NgFC460_00528                                              N/A                 NeisseriagonorrhoeaeMTDNLIQIATPILTVIGVFVAAYGIMRNTENAKKRATIDMIMAERNNAALQEAITIVNGLAKTDGCILATYTSDTPDKKKDREAILTVLNQREFVCAGVLGGALHEKMYKDFEYSMLLRDWDNLSSFIFEIRRIRSAPTAFQEFEAVARKWKKKPLKTK
498174..498185                     attR                                                                                 N/A                 AAAAATGCCGTC
complement(498310..499299)         PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; NgFC460_00529; phage(gi109289985)        2.46e-101           NeisseriagonorrhoeaeMATITQRNGKWRVQIRMKGVSRSATFERASDAKAWAARIESQIMDGIQGNAPRNTIFADLIRRYLSEVTPSKRGAREESYRIGRALKTPLAKVRLADLRPQDFADWRDQRLQEVSPTSVGRELTTLSAVCEHAMKEWGLLRENPVRKISKPKKSRARTRRPTEQEIADICAALLYRPNEKPKMAVQRVAVAVLFAIETAMRAGEICGLKWADVNMRRRIAHLPITKNGDSRDVPLSLRAAELIEQLRGIDDTWVFSLDAKSLDVLFRRARDNCGIQGLHFHDTRREALTRLSKKVPVEVLAKISGHRDLRILLNVYYRPDMADIAKMLD
499988..501022                     PHAGE_Prochl_P_SSM2_NC_006883: phosphoribosylaminoimidazole synthetase; NgFC460_00530; phage(gi61806048)     5.65e-82            NeisseriagonorrhoeaeMSTSLSYRDAGVGIDAGDQLVEKIKPFAKRTMRPEVLGDLGGFGALVEIGKKYQNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDILVQGAEPLFFLDYFACGKLDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVGVVEKENVITGRGIGAGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLREAVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPKNTVAQIDAESWELPKLFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVRSFLSGQGETVYRLGCIRERQGNEHQTQVA
506528..506539                     attR                                                                                 N/A                 TGCCGTCTGAAA

#### region 2 ####
722149..722160                     attL                                                                                 N/A                 TCAGACGGCATT
722329..723342                     putative phage associated protein; NgFC460_00729                                     N/A                 NeisseriagonorrhoeaeMKKNLPALALASMLILSGCDRLGIGNPFSGKEISCGSEETKEILVKLVRDNVEGETVKTFDDDAFKDQAFADIGISHIRRMVERLGITVDEVRTTEKTDTSSKLKCEAALKLDVPDDVVDYAVAANQSIGNSYKKTPDFFEPYYRKEGAYYVKTISYSVQPTDDKSKIFAELSQAHDIIHPLSELVSMALIKEPLDKAKQRNEKLEAAEATAQEAREAEEAAAQEALGREQEAARVSEWEERYKLSRSEFEQFWKGLPQTVQNKLQASQKTWKSGMDKICANNAKAEGETPNGIKVSELACKTAETEARLEELHNRKKALIDEMVREEDKKELPKRL
723387..723527                     phage associated protein; NgFC460_00730                                              N/A                 NeisseriagonorrhoeaeMPQYRNWQNGLGAKCADGDEYGVAQSDCRTREINAKTKEIQGYLID
723632..723826                     putative phage associated protein; NgFC460_00731                                     N/A                 NeisseriagonorrhoeaeMIYYPAVLFQNPDQSNWGVIIPDLPGCILSAIRLPTRLPMPKPPQCSISKGFCRKTCRFPRRKA
723766..724014                     PHAGE_Haemop_HP2_NC_003315: hypothetical protein; NgFC460_00732; phage(gi17981828)     6.09e-07            NeisseriagonorrhoeaeMFHLEGLLQENLPIPEAQSIEVNRDNPDYADAVLWTMVEADDAALTGQVRFNVSWPQHILNRVDACTAARHETRAVFWRKPP
complement(724474..725724)         PHAGE_Haemop_HP2_NC_003315: tail fibers; NgFC460_00733; phage(gi17981847)            5.83e-68            NeisseriagonorrhoeaeMEKTQFGRHPRRRDRVLSQSRPKPRRLSQSRRHDLCTKHLLDLYRALGNTNKLPDLTRTDIGITAWFPSDQIQTGWLAFDDIRERVTESAYPELYRLLTEKYGRIQNVPQAEDRFIRNAGNGLAVGTKQEDEIKRHVHKVFSHWANHPDAAAVGYEDRNERQRSALVSTWTDGDLNDNGFLTPRLDSKMATGGAENRPKALVLKLCIKAADTLGEAVFRIKSHGETANAGALDASRLAQGLQEKADRDHTHTTAQIQGLDEKISAAVAAQFTRQTIGGVDIVRFPDGTMIQTGSYRFARGGSPIGNEVVFPIAFADGNVKCFVSERHSGRVNGERQHNWLFIRAKNHAAAIITNWYESSCDWMAIGKSASGNAASPTPIVPEIPEIDEEPQRESGRSSTGLRNPRRHRGLDFPVGS
complement(726156..726725)         PHAGE_Haemop_HP2_NC_003315: tail fibers; NgFC460_00734; phage(gi17981847)            9.67e-18            NeisseriagonorrhoeaeMANATEQNQFDQAVRLIEPGDSVVVGPGAPVNQPLQALANRTLLLKNQTEALQTASDTKAAASTAVNAGDGLTGGGSLAQSRTIALGAPGQITATSQNTVPKNGHTHAIDTARTDRAGIVRLDNAISEAEDTAATPKAVKTALDQARAAAATADLKVSLSDNQTVTGQKTFTAETQFQSGIRLSANPTH
complement(727144..728199)         PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; NgFC460_00735; phage(gi937533298)     2.33e-48            NeisseriagonorrhoeaeMGNSRLSQLPAPAAIEETDFEGIFARKKAALTALCPESIRETVAQTLELESEPLTIDLQQQAYQELLVRNRINEAVKANLLAYAQGSDLDHIAAQYGLSRKTIRAADPDANPPVAAEYETDDAFRARVQAHPEKYAAGPRTAYEAHAIDAHPQITHARAVRRAIGTVEVYIKTQSGTPDETILTAAREYLPAETRRPLCDNVQVTAAQPKDAAVEYSAEYHPAANIQAERQTACEALDNLWRQNAHIGASVALSKIIGALDTPGVKKNHTAQPRRRHRMRQRRIHPNHVHARARINEQHRPREQQPPATRTGKADRTRNCRRLPPTRPRIFTLSRLRKKHRHGRGLGLCRN
complement(728220..728546)         PHAGE_Pseudo_phiCTX_NC_003278: baseplate wedge subunit; NgFC460_00736; phage(gi17313236)     2.18e-21            NeisseriagonorrhoeaeMTDAENGRGQDTLAHIAQSIRNILFTRIGTRLMREEYGSFIPDLIDMPAGHAAIALIHQAAVTALARWKPRITVRRIQADTADLAAGKIKLTLDVTLADGGERTYRIK
complement(728543..728737)         PHAGE_Escher_pro483_NC_028943: baseplate assembly protein V; NgFC460_00737; phage(gi971758527)     3.92e-05            NeisseriagonorrhoeaeMELKAVTSLTIDTPQTTITGHLTVNQTTTAQGLLTYQNGMNGQGGSLSEHTHPDDSGGTTEKPQ
complement(728837..729043)         Uncharacterised protein; NgFC460_00738                                               N/A                 NeisseriagonorrhoeaeMTDRQIDNLIKPATIADTDPASAHNTAALPPTGCPISSPLQAACQYGASQVSAKPAPSYPLPANPRTA
complement(729228..729467)         PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; NgFC460_00739; phage(gi971741518)     6.44e-13            NeisseriagonorrhoeaeMRNKINRNDMELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPDTETRRADMPLEKWRQFLDWIEKTNAV
complement(729572..730147)         PROPHAGE_Neisse_MC58: IS1016C2 transposase; NgFC460_00740; phage(gi15677271)         2.97e-31            NeisseriagonorrhoeaeMKITHCKLKKEVQKEPLRSFVPEVTARSAADILGIHPDSAALFYRKIRTVANHRLALAADEVFGAPPGRAEAVSAYGVKADAVAARQEKRLSSAFRNATGGPIPLPRTMPSLKRCPLPSKRKSCRTVLFMPIARAAAASRTRAVLSVAASTVPRNLQTVGTTLTALGTFGIRQNAPCGNTTESTANLSRRS
complement(730169..730453)         phage associated protein; NgFC460_00741                                              N/A                 NeisseriagonorrhoeaeMNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDGECPGGHYRHSENGITLYDFIFFGGKPADEARFAAVLTETCRRAVKKIGSVPD
complement(730490..730753)         phage associated protein; NgFC460_00742                                              N/A                 NeisseriagonorrhoeaeMADILPSDKRRQPPKTKGNPINIIEQETKRTELRKIDAEIAKIIADAHKINAESVKIAQESRWYPMMAATGLVTAIAAVLALIFKFA
complement(730773..731021)         phage integrase; NgFC460_00743                                                       N/A                 NeisseriagonorrhoeaeMHGFRDLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYRLQERRELAEWYGRRHRQAYEAAAQNTCNKT
complement(730982..732052)         PROPHAGE_Escher_CFT073: prophage P4 integrase; NgFC460_00744; phage(gi26249391)      1.22e-48            NeisseriagonorrhoeaeMAAHNKLTQKQIEAAKADGKQSKLADGGGLYLLLHPNGSKYWRMRYRHGGCEKTLALGVYPAVSLKQARELARAARAQTAAGIDPVAEHHRTRPGSGRSLPEIARAWYGSRQGQRADNTLEGDRRSLAYLTDYYKDNTDINDITTAGVSKFIEHLNRINIPACARRTVQILAQIWDYAVQRGIITDERRNPATTARPLLNTSKPKPQPHIRPDELPDFYRALQTAHDLHPYARPLLLLAALTVPRPSALLSARWQDIDLTTRLWHIPAADMKTKHPFTVPLSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTPANPNTPCTDSATSSPTSA
complement(732261..733040)         putative ferredoxin--NADP reductase; NgFC460_00745                                   N/A                 NeisseriagonorrhoeaeMAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSRLGFYEGKGFIWRAYSVVSAEYADTLEYFAVLIQDGPMSALFAKMQQGDTILLDKNATGFLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDRLAALSEHPLVGEYGHSFRFVPVTTRAANPSGLSGKRIPELLKNNSIEQALHTKLTPESTRFMICGNPEMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF
complement(733332..733628)         Uncharacterised protein; NgFC460_00746                                               N/A                 NeisseriagonorrhoeaeMNKNIIYIFSLLITIVIFFIFEKNVISKISFDYNKKEFLISDITNFNWDHVKLYIINSDFQKIVFYDKGKIVFEELIELDRKGKVLPQYLFDSYLKNV
733940..734998                     PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; NgFC460_00747; phage(gi399528790)     8.93e-20            NeisseriagonorrhoeaeMSLRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATVKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGAGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVPPQTEDAFRLIGIGVGRLVPKNQQQDLWA
737930..737941                     attR                                                                                 N/A                 TCAGACGGCATT

#### region 3 ####
1027702..1029474                   PHAGE_Helico_phiHP33_NC_016568: DNA primase; NgFC460_01047; phage(gi371671350)       1.18e-50            NeisseriagonorrhoeaeMIPSDFIDELLAKTDIVGIIDEQVPLKKGGANYMACCPFHKEKTPSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQTLEETTAAAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVFQPYPNTALVDTGMVIDNEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVLDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEAERILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQPVMPTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAETIKNHPSVPATAQVLEHMRGSPYEETIDRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQKSLQSGLNESEKKLLLSLLTAKQN
1029661..1031589                   PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; NgFC460_01048; phage(gi331028036)     7.91e-37            NeisseriagonorrhoeaeMSKNQNHEEYQDDARPLTIEEQRARLRQLIIMGKERGYITYSEINDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAALSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILELIEKICKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENEDDEESEEDADEVSAANLAELKQKVIGHFAQIEKDYKKMIGCLEKHHSRHKDYLAYRDAIANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEITNLQWIEEEIAKGRVWSNALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLAELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHEVTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLDSEDSKL
complement(1031629..1031856)       putative phage associated protein; NgFC460_01049                                     N/A                 NeisseriagonorrhoeaeMRQISLTDYFCKGLGLRAQTLATIAAVRELLNSGQTPPPDYGKRCKACSLVEVCQPELLEKRDGSVGYVEALFIV
complement(1031980..1032327)       phage associated protein; NgFC460_01050                                              N/A                 NeisseriagonorrhoeaeMTAQGKALHERVDSGEPETHKGVRFERTVHVSAEKPGISGILDLVEADTKTGRLKPVEYKRGKPKPDPGDEIQLCAQGLCLEEMTGQTVSEGALWYMQTRHRVPVVFSDGLRPLQ
complement(1032299..1032463)       CRISPR-associated protein Cas4; NgFC460_01051                                        N/A                 NeisseriagonorrhoeaeMTALLTETQRENQDTRLIPLSALQHYAFCPRQCFDSQRAGVGGELFDRAGQGTA
complement(1032470..1032838)       phage associated protein; NgFC460_01052                                              N/A                 NeisseriagonorrhoeaeMKYWLVGASWGGQGHQDQFFVENGYWVLEWESSQQPDQFAKGEKIQVGDRIAIKRMKGQGSSEIKILHIGIVKGVISETNKIICVVDWIVKNLDRNVESRGCFKSIHDPYDKDEWIEKIFCL
complement(1032865..1033407)       phage associated protein; NgFC460_01053                                              N/A                 NeisseriagonorrhoeaeMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIVPPEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISANLAAKTGFSDDDLAKLWQALTLMFEHDRSAARGEMAARKLVVFKHDSALGSQPAHKLFDTVKVERVNGESGTPASGFGDYKISVVSDGLNGVSVEEYL
complement(1033573..1033932)       phage associated protein; NgFC460_01054                                              N/A                 NeisseriagonorrhoeaeMFTPSDDEQESAKIFNVLEQIGKGRPLQEIAPELSPNTRFYILGLAPNAARISVRFWLDTTFGQLAENLAHHWQDLALEPCAWKTPPSIWRLLLQTAVLGKSENIQRLGNRCLPETQNP
complement(1034065..1034931)       phage associated protein; NgFC460_01055                                              N/A                 NeisseriagonorrhoeaeMILASLVRYYRRLATETDETGNPKVPSYGFSEEKIGWILVLDKEGRLKTVVPNLTADKKPQPKLMSVPRPEKRTSGIKPNFLWDKTAYALGVEANKNKAEAKEKPFTPSEKTFEAFKQYHLDLLQNSEDEGLQALCRFLQNWQPAHFAAENLPAEMLDSNTAFSLEKPTALIHKREAAQTLWAGCLKSDEALESLCLISGDTAPIARLHPAIKGVFGGQSSGGSIISFNKEAFSSFGKEQGANAPVSEQSAFAYTTALNYLLRRENNHCLTIGDASTVFWAEADDIVD
complement(1035440..1035736)       transposase; NgFC460_01056                                                           N/A                 NeisseriagonorrhoeaeMAYSADLRNKALNHSGLTKIRTRRRTAGSTNGTEPIRPALHHLREPFPLGRGGATPYRFLLIRYITDNAKTPAKPQQRLTCQETRFTCGFALKNKQAA
complement(1035765..1035974)       PHAGE_Mannhe_phiMHaA1_NC_008201: DksA-like zinc finger domain containing protein; NgFC460_01057; phage(gi109289947)     2.53e-10            NeisseriagonorrhoeaeMTDFADRASEREAEFLVEALAKHQPPSENTAGFSHCEDCGDPIPEAKRKAVRGCTRCVVCHEYSQLKTK
complement(1035967..1036257)       phage associated protein; NgFC460_01058                                              N/A                 NeisseriagonorrhoeaeMKRQTKTATVLTALARTACTSTTVPSDTPIKTVAVAEIPPVPSGLLVEYERPERPAGGSPEQLLNHAVRYGGYYRKLEIQIEGWQNWHTKGRLKHD
complement(1036262..1036549)       phage associated protein; NgFC460_01059                                              N/A                 NeisseriagonorrhoeaeMIEFVRAKKRLLWAFVLLLAWACGYRYAADKAEAEQTALIAAYRHSSMVAAEQYALQLKKAQDERQRWYDFSQKQSTDLAAALSELDKTRNTLQE
complement(1036669..1037307)       phage associated protein; NgFC460_01060                                              N/A                 NeisseriagonorrhoeaeMTIQSKHYEIRPKQAFITPENVSIPADLCCEVQVRSLLQHAYAELVHDNIYKPDGNVPKQAEREVAKSMALMETTDDLFSRTLAILKEANQPQEELLPQLSQLYQKEIGLVPEVDKKTNMIFLETFQSSISQSSILSDIRSLLNEKKYIAKRIKENAEEMYFFSQPAALLVYWLIEKVGADEVWKKWPLPAYNKNLKFICTDLDKQPSHELF
complement(1037304..1037678)       phage associated protein; NgFC460_01061                                              N/A                 NeisseriagonorrhoeaeMSDIDDFKSYLESHQAAFSAWGRFVAEEIQNQLSNVISPVPVANFLKIEAKPGVKEISSALAKIGRKNYTSPQTQMTDLVGVRFVALLAEHIQIVCEIIESSSQWNAKVSKDFADEIQQNPKAI
complement(1037675..1038715)       putative phage associated protein; NgFC460_01062                                     N/A                 NeisseriagonorrhoeaeMKKIITHRIYPKNENRERVEPKISTHLIDLPITARRTLETRLTKALGNKSHGIEMSVVNTAENSFFQIAAAIQLKEEAEFIEDSAQFAHMLTDAQLNTNAPGGILLVLKGRVGDTGKPFLCVIKAEPQDGFRTKEEDDFITIEFLEELLLTDSARLFKIGFLVAETVRPLEQIQSGNYRAFLYDHLMTQTETRPAASYFYQVFLGMSIAASSRKLTQDFFEWTRNFIDNSDLSDDAKLDAHEALRVTLKSAEATISVNNFAQNHLPQEKRTTYTEFMVEKDFPQNAVSKDIEYIKTRLRKRRSYGFSNGVVILTPPEHTQDYMEIAPTEDGEYTVVLIKGQLQQQK
complement(1038949..1039329)       PHAGE_Pseudo_B3_NC_006548: transcriptional regulator; NgFC460_01063; phage(gi56692586)     5.10e-12            NeisseriagonorrhoeaeMEKTSLFGKRLKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSKIGIDIDYVMHGRRGETAAMPSESLSAEEKELLALFRQLGSGSRKELADYAAFKLVVEKKAQTALGKVSNG
1039420..1039599                   Uncharacterised protein; NgFC460_01064                                               N/A                 NeisseriagonorrhoeaeMNTLKAHARQLMMDHIHPATGKSLFILKQAKTLLLHNRPDVYRAKRPKTKHIIPHERHK
1039538..1039831                   PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NgFC460_01065; phage(gi56692585)     6.26e-05            NeisseriagonorrhoeaeMFIVQRGLKLNTLYHTKGINNIEKPLNFKPIPYPQTRGSTAVWFKRNGVCKTHRAKHFNLERTAVEHPLRGKLKGNFGKSHEAAVKFGLKEDADGDE
1039818..1040102                   PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NgFC460_01066; phage(gi56692582)     3.13e-14            NeisseriagonorrhoeaeMATSKKAQRLLRVFLAMDAHPVIGISNKELSDGLGLTPSQVSRDIDDLVASGLVIKLENGNYAYGIKTLQIAERFRKQQERLNARLQELENRIY
1040139..1040321                   Uncharacterised protein; NgFC460_01067                                               N/A                 NeisseriagonorrhoeaeMATEILGHTVGVTANELAIHSMEVMDKFSGGEAYNETVWIERGRFADAKRWKGCLSRDAR
1040288..1040410                   phage protein; NgFC460_01068                                                         N/A                 NeisseriagonorrhoeaeMEGMFEPGRALIIIKEHTPHGRFAEIAEKELASDGGNPKD
1040410..1041012                   PHAGE_Pseudo_B3_NC_006548: hypothetical protein; NgFC460_01069; phage(gi56692581)     2.05e-25            NeisseriagonorrhoeaeMNATLRFIDPKMKQAQPKLMTLGKSKLLELLVEDDDTLLELAEGGEVNGNTFDDVDRMTIKELRVALRESRETAEAKDKVIADKNKKVDELAEKLSKKQTGVKEPKPADVGIELTMQLGSLEVGIRSQISRLRDMFEQMAAHGEAHGFDHRAKMVGTLNQIILDCEQLRESYALPTEAPADNVPEWLGGETGEGDESGND
1040993..1042771                   PHAGE_Pseudo_B3_NC_006548: putative transposase A subunit; NgFC460_01070; phage(gi56692580)     6.95e-161           NeisseriagonorrhoeaeMNPAMIERLKAVENQAEAMGRGARSAYLKQQAQELGISLATLYRKLEAVSVKPTRKRRSDAGKTELKPEEAKLISAVLAEAMRRNGKRLMPVRQAVEMLRANGKIEAARIDGETGEVIPLSENTITRALREYKLHSDQLLQPDPVSRMKSEHPNHCWQIDPSLCVLYFLPRQGKDTGLRVMKEEEFYKNKPKNVVKIENDRVWRYTGTDHASGTISVRYYFGGETSANLCDFFIYMMQAKKDIGKDPFRTVPRMVMLDPGSANTSAAFKNLCKPLDVHVQINKPGNPRAKGQVEKANDIVETAFESGLRFTEVHDIDQLNALSERWMRYYNGTQKHSRHGMTRYQAWNKIKPEQLILPPPAEYCRELAVSAPKEAKVSADLEIRFGGRVYSVKGIKGILVGKKVLVGKNPWEANGARVATYDAEGNEVWVSVPEVVFDEMGFKADAAVIGAEYKAPADTDAQRHRKELDKLAMGAETLEAAAAKRKGKAVPFGGKIDPYKHQEDTLAASNTLFMPKQGQQMDYNKMEVAEQVLSKVEIAKRLKPRVEADGGDWKQAVSVILKHYPEGVTEGRLEEAFERTRTRCRLKLLKTG
complement(1043082..1043726)       putative DNA polymerase III subunit; NgFC460_01071                                   N/A                 NeisseriagonorrhoeaeMQYGGSPFFFPALGSLHAYKIKAELVGRYHSGCYVSAKNLLKTFTTVRFEKGSDGMLNAKTAALKNGVTDNPPTGLFANKKAARRALSSWAETYGLCPASAGILPDGYAEDEPCPVYVSGRCDKACGRSDEQVLAFAHKLPVLDWGKMHEVEITETDPLTGEKSFCMEWAAHWKWMTGFGISIKIYRMCLRRSLKRTGKILRKSVKSIPVGESW
complement(1043730..1044497)       PHAGE_Clostr_phiCT19406A_NC_030950: hypothetical protein; NgFC460_01072; phage(gi100067)     2.56e-26            NeisseriagonorrhoeaeMIVVSRWPLLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALVKFGQGRAERYEWLVNPQKPIPKFVAELTGISDGMVADAPVFAEIAGGLFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRRLYPQFYKHSLDGIIERLGIVVEDRHRAMADVSALRDYLEYSLSAHGLEEWSRQCFRLTNPKLFPAALPERLRERLYGLPDGTGVLACFDGGGKVNYIGTFERAYGEVAALLDSGKAPV

#### region 4 ####
1107362..1107664                   putative phage associated membrane protein; NgFC460_01138                            N/A                 NeisseriagonorrhoeaeMKTVPTILTGILLATALPASAHGMHKSKPLAMDELPPICQQYFKRTETCYNKAGNKADFARNNTKFLFQALPAADLGQRKQMCQIAMDSFAEKTRNLNCE
1108623..1108790                   putative phage associated protein; NgFC460_01139                                     N/A                 NeisseriagonorrhoeaeMVNEKLAENRKRYEQKRVIKKVSFNAETEKELLEYAQNLDFSQWVKSIIKEKIKK
1108950..1109795                   PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NgFC460_01140; phage(gi31544021)     2.29e-46            NeisseriagonorrhoeaeMNAVQVLNFQQNSVRTVADNKGELWFLANDVCEILGYTNPRRTVDLHCKSRGVTKRYTPTTSGEQEMTYINEPNLYRLIIKSRKPAAEAFEEWVMETVLPAIRKTGGCQVGPKTTADDRTGLRQAVAALVGRKGIDYSSAYSMIHQRFNVESIEDLPAGKLPEAVAYVHALTLHTGLTGEVLDAPPKAEPKLPIDGNSLADIAAMVYYGTWMIESGKDISAPLKQLGCRQAVTMWTVWHETRPILKRSAAALEVLRGYADKDASDRIAACLEGIYGKATVR
complement(1109832..1109981)       putative phage associated protein; NgFC460_01141                                     N/A                 NeisseriagonorrhoeaeMSAEEFCRKQIAYWLNESRKASDNADLKAFEFAGREPADYREMLKRYAA
complement(1109984..1110568)       PHAGE_Pseudo_F116_NC_006552: hypothetical protein; NgFC460_01142; phage(gi56692957)     1.08e-34            NeisseriagonorrhoeaeMVERCGSRGVPARPAAAFGRCVCNGCGKRAAALCLCGRGFAAGYAYEIDSIRFVSDGKPVCLKLVSPEAADVCAPGWRDGAQTGLPVYAVQGDGKLTLAPAPDRDGRLFAGGYCLPRDMAGDGDEPEINSIHHRNLVYWALAEAFSIPDAETFDPQRSESARRRFELYFGLPADSDLRRITREDAPHLNRHFWI
complement(1110654..1111061)       PHAGE_Pseudo_F116_NC_006552: hypothetical protein; NgFC460_01143; phage(gi56692956)     5.09e-08            NeisseriagonorrhoeaeMDKVFIKYIGGRAVWRDRIYHTGLVFEDGQVREVSAGAAAKLLRHGDVFAAVPGKRVEKADDTEALEKAGASELERETAAFDAVQDVILQINRMGKDELELYAKANYGQGLDKRKSAENLRGDVVRMVRQFGIAQ
complement(1111145..1111618)       PHAGE_Pseudo_F116_NC_006552: virion structural protein; NgFC460_01144; phage(gi56692924)     1.30e-30            NeisseriagonorrhoeaeMAEIYVKNNGGNRFGGVPYGNLAAEHYRIVAKQDGAILGADASEPPKAGDVLALGVLEQGFRLDDAQIIVKTAMSSGITADVGFAYADGADDAKVPQDAAYFASGADFASAGRIRCQSAKLVTLPKQALLTVTLKGAENKKAADIDILIYGEKFGQL
complement(1111657..1112967)       PHAGE_Pseudo_F116_NC_006552: virion structural protein; NgFC460_01145; phage(gi56692923)     8.28e-157           NeisseriagonorrhoeaeMAQKTNTAYGDPQAMMKQAAGLFAMHMQRNSTLNRLAGKMPAGTAGAEATLRKQTTQHMPVVRCQDLTRGMGDEIRFNLVNPVSALPIMGDNTAEGRGVGMSLSEAGLRVNQARFPVDGGGTMTNQRSPADYRALIRPAAQSLMDRYADQTLLVHMAGARGFHDNIEWGVPLAGDPKFNDYAVNPVKAPSKNRHFTASGDAVTGVGDNGGELKIASTDLFTMDTVDSMRTVLDQIPLPPPIVKFEGDKAAGDSPLRVWLLSPAQYNRFAADPKFRQLQASAIARASQANQNPLFLGDAGLWNGFILVKMPRPIRFYAGDEMKYCADKFSEAESGLKIPASFADKFAVDRSVILGGQAVLEAFANTGKHGGMPFFWSEKELDHGNRVETLVGTIRGVAKTRFAVDVGGARRKLPTTVSRLWIRWFLCTAVSADSNAA
complement(1112988..1113548)       PHAGE_Pseudo_F116_NC_006552: hypothetical protein; NgFC460_01146; phage(gi56692955)     1.81e-20            NeisseriagonorrhoeaeMRERIEELEKGAEKPGVETADGSDNSLFGDFSDEDVKKGVEKLIQEKLAGYEADMKRQEAAKAHYREIYTAHPDADSIVESRELEEWLAGQNPLVRKAFNDALKDGTAAEVIGAFDMFKAAKSAAEPEKPAEKPPAGKNTPNTLSDIPAGRDHTASDGPPDYLSGNALAEKLASMTEEQVEKFLNS
complement(1113593..1119697)       PHAGE_Vibrio_12A4_NC_021068: hypothetical protein; NgFC460_01147; phage(gi481019131)     5.71e-88            NeisseriagonorrhoeaeMRQFADRTKQEEAGRFFSGPADGNTPHAEELARGTEKQPDVSGIPSEDGAEFLDTGVMPDGLARQYADMAAKYRAKPSEAVGIDPDDGAVSAAAALAADSGAAVPSAVSDDMEARSVADDAPSGRSADADRGGVPSAYGNVRPGGAPRGAASVAPGGSAAAASGGIARVAPLPAGQYFDGLDTRGRKALAKEAGLDIKGVADFGQIAAPVRRKIEQAYHARIEADYQAASEAKQGYLPPPVRMADAVPVPKKGFSVPADALDKESRRRFDALPEWVRRHAQTVADYTADGIMRREAGMADMRGHYPEGLAESAGAVRAYRAQHPESADVLDRLNRAVYGYRRNNGWSVPLLSREGERLQGVRTALPDDGASEAVVGGGRGLTRALPTEDKGLAQDVRQDVRQGLTQGGRGLTPDAGADANAAALQGLPGSAVASGNAPARRQNLQVRARAEGAAPGLSASENLAGTDGGKRAPVAGKRPDTVLPVLNPQVAESAGRVSPKKRMADAAADFTRRLAADRRRPEKAGVPLGGGEYRFEHTDRRHIDALAGVPGRPGKGGMPEEFADMAGPSNSDGLVSDGRRYLKGREAETLRAGGLSEAVPSEPGRDYRPTQEARAPAKVMARPRDAAADGKPAGRAQPARAKDTPVAGKAAAAKNAATEKPSSDKVRNIEAGKSRFDGGKGKSAAAQGAATEKPSEKTGKAKPETFAKTASDNPEEARRKARVLQGGPVYTVKERQAPQGFKALREHAESIKKRLAESIGGLAERVDVAAVSETAPDKAQMLLSQRVEGWFDGRTGKITLVAENLTPERAVWAAWHELGHRGFAADGFAKYREELERADGNGLIRRIADAVQEGREGTGDAAASVRPAAVEEAVAELYAAQRTGGWAGIENRYGVKVGNGLKRGIAGVLARIGALLRRVLQRLAGKAGGAMSDADVFAMLADLHGNVEGARDAPWGGNHRAVMFARAEDGAAERSKSESLEKLRRAETIRISGREVPEGGNLREYKRNALEYGKSLRGPYVNKDTGREISLGRSGITEILRHDYKDAEHLQSIAAIPQIIENAVYIDTLPNEDLAKNGDIQGYEYYVSGLNVGGADYTVRAAVAVSRNGNRYYDHKLTKIEKGNLLSLLDRVSTTGASESKSPLSGIDDKRLLQILQDKDAGKGGIADFDTEAVRFSRAANIEAAIGRITGKKSDLRNALKDRWDASKGIQLQFLGRRQIEDIYGGVLDGLKEYGRLSELFGADANKAVTEADKVVREWGRLKEEDAKALADLMHDATLAKVDADPLMRKDAQKRLDGIRTALDIADGKIEKAEAAVASAGARIARADAAYNKAQRAADKAAYALEKAQEKHGREILADEADMRLRRLFYADSEAKRALRRAGADVAAESRAKTDAVRMLEQARADVKRLEKDEVGAQKALEGLALLNRRFAGLPDAAQRVYRKARDDYRAHFGQVRDALAERLARAGQDAETVRRLKERFDNELGGVYFPLARFGDYLVVVKDADGNSANVSRAETLSEAEKLRDALKADFGAGFKVSPVMKSRDYIRSRDAVGSGFMRELGEAVGMLDLDPAQRARLNDTLTQLYLNSLPDTSWAKHGIHRKGVPGFSDDARRAYAQNMGSGANYLAKLRYADRMAEQLDVMQDFVDGRKYEEGFDQRQLQRVADEMRKRHEAVMNPNPSKLAQALTGFGFLWMMGMSPASAVVNLSQTAMVAYPVMAAKWGYAGAARELLRASKQIGLRFGEKFNTIEDSLNGDEKAAFRKAADYGVIDLSQAHDLAGVANGDPGLAGSAWQKVMDKAAWLFHHAEKFNRQVTFVAAYRLAKRAGADSEAAFEQAKKATYDGHFDYAAQNRPRFMMGNAAKVVFLFKQYSQNILYALGRNAYLAFKGDKQARKTLAGLLVSHAMASGILGLPFVSTLLAVVSMLGSDDDDPWDAEAALRNMLADTFGDKAGEVLAKGFSRLTPLDVSGRLGLDQLVFPDIQDGLEGKKWAESLVVGSTGAVVGAGIGAADGVRTRSSVPRTANTLSLMKSW
complement(1119729..1120943)       phage associated protein; NgFC460_01148                                              N/A                 NeisseriagonorrhoeaeMSDLVRYDPLEHGRLAGGLKEYRGFTQKDARAAADDTALTRGFKNSMRSARMGWNALTGDKEELGRLKAEDMDYRKIQEGRKSQARRELGEAWEKGGGVGDGLSNVWGELKKDWREKGLDGALEDVGEMGGAVLEQAPNALVPIATTTAGGILGALAGGNAAVGAYAGATLGNTLMEYGGQLDRAAEAAGVDPADKDAVMAFIGRGAPGALKNAAVKGAVVGAADMAAMKLGGSILNMGKKAAGKAALEKMGVAAADKAAVAAAKGTPEFAALAKESAKGGLGGAARHAAAYATESAGEFAGEYLGTGLANGEWDEKGAALEAFSSLGHSAVGFAGTKAYAAVTDPLRPPAGRKAGAQGGIGGNRKAGRPAPEGAQALRAAAQAAADGGTGGCGRRRGTGRRGF
complement(1120940..1122136)       phage associated protein; NgFC460_01149                                              N/A                 NeisseriagonorrhoeaeMGLFEPSAGDFWEMKEKEEKEKARKGAEERERAAAQAHRADAVRRTVANYEAGPARYRNVMDLSRNNIEDGARRLRRAGAFERGADAGLGFSGGDKALSPDARAGADFARRDTRPTDAGGRTPPPLGFDGNVYRGGKPVRDFDAQRPLVSSKPDALSPEERELYKRATTPHAGALNGQLTAAQLNAARGIVAEHNKNAAVRELGRERLAAAAAENAANREAVLQKGRFDAAVKANEGALNREMAQRNADRAFDVQQAELGMKRQGFEMKREADALELEDRKRIADLTRAYGFAKSDGQRGEIARQIDALNGKFERQGEKGFDPNVFKTISYEVADPDTGLTAKREGIVDLRTGKPLDVEFAGEREKRYAQLGFKPNGQKTAGGKIIYENEKGEKRVEQ
complement(1122382..1123206)       PHAGE_Salmon_vB_SemP_Emek_NC_018275: antirepressor; NgFC460_01150; phage(gi399498814)     1.12e-39            NeisseriagonorrhoeaeMNNSVQISNISIHQTEIGLFSLNDLHRASGGEDRHAPRRWLQNIQTNDLIKELEKDGKPSIQSKQRLGTFVCRELVIAYGMWISPKFALQVIQTFLAVSDGIKSAKTTADDRTGLRQAVAALVGRKGIDYSSAYSMIHQRFNVESVEDIPAGKLPEAVAYVHALTLHTGLTGEVLDAPPKAEPKLPIDGNALADIAAMVYYGTRMIESGKDVSAPLKQLGNRQAVTMWTVWHETRPILKRSAAALEVLRGYADKDTSGRIAACLEGIYGKATVR
complement(1123527..1124189)       hypothetical protein; NgFC460_01151                                                  N/A                 NeisseriagonorrhoeaeMLKHIKALRFLRVISFVMSAIFFALSLAAKGGAVTNFFILFFVLLIAGSLMSKAINKLNEKEKEKEKIRLLFAQREKFYRILENPEQGFTPPTALLKSGETCFLIDYVNMGEVVTERVRTYTGTRLKLGSTPVYLGGGKSVANEKQKNVAYGELVLTNFRLIFVGNMRSIDLPLDKINSVECFQSSIRISQSGKNKPIFFNTVFNPQLWKEAILVLSDKK
complement(1124261..1124668)       hypothetical protein; NgFC460_01152                                                  N/A                 NeisseriagonorrhoeaeMNQQEFEFMNDLARAFERRYRDTRSLNRCLSIEGRYMGEEACPHKPEIGLRYGEDAMFLTLQAWAKVDAPQQEAVRISFGIGAKSQAAYEERLQAEIRRRGEGPLHLQTDLGLAAWYRAIRQAAGNDFDLLFEKV
complement(1124935..1125315)       PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NgFC460_01153; phage(gi148609431)     4.82e-08            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYKETVRRIAQGAGAMPSEGFVAVRLRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVTGGGLAVEVGELDEK
complement(1125306..1125587)       putative phage associated protein; NgFC460_01154                                     N/A                 NeisseriagonorrhoeaeMAEEMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
complement(1125616..1125765)       phage associated protein; NgFC460_01155                                              N/A                 NeisseriagonorrhoeaeMDTFLKIIATLSFAGAATLAVWLLVEAADAVLRRKRDGKGEDDFDGFGY
complement(1125787..1126242)       PHAGE_Mycoba_Gengar_NC_031035: hypothetical protein; NgFC460_01156; phage(gi100045)     2.37e-08            NeisseriagonorrhoeaeMTVRNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRADAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEEQRLNNG
complement(1126557..1127339)       PHAGE_Vibrio_X29_NC_024369: IstB-like ATP binding protein; NgFC460_01157; phage(gi658311189)     3.62e-44            NeisseriagonorrhoeaeMALRNASDFLGAYGGGVRVERRQCAEHGGYAAKSVLRGVWTGCPACRKLEAADEMAAYAETLRRGAMRDALEKRIGRSGIAPRFRNCRIENYAVSDSIPGMARAKAAAAEYAANFADVLQTGRSMIFSGRRGTGKNHLACGIAREVIAAGKSALVITVGDMLRTVKDSFGGGGGEAGAVGVFVKPDLLVLDEFGAGSLSETDGRILFSVVNARYERLMPMLVLTNLTAEAFRENTDARIRDRLRDGGGKLIPFDWESYRA
complement(1127354..1128376)       PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; NgFC460_01158; phage(gi100046)     3.57e-15            NeisseriagonorrhoeaeMSARLMGMAFKTGIPRGQRFVLVKLCDCANDEGLCYPSQETLAEDTGFAETAVRQHIKWLKDNNFIKSARRQRGRERKSDIYRINVALLEKCYAEAAKRKAARQAKMWEEPLDYEPSDYEPSDFEPSDYEPSDYEPSDFDAKNHQILSGEPSDFALRTVRFCAKNHQILSGEPSDFDGSLYVEPSVEPSVEPSVEPSGSNARGARAPAGPHPAKPQTAPPETAPAAKAKKTGRHAAELALLAAYGITGQAAADFLQVRKAKRQPLTETAMRLIAADAEKCGMTALQAAEYAIASGWGSFRADWLQNKTFGRSGNRGGPTHNQTAAVPDAGSYGDMPTTDF
complement(1128373..1128600)       hypothetical protein; NgFC460_01159                                                  N/A                 NeisseriagonorrhoeaeMNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTQLAARITDLEGRGFVFAKPRMKAGGRGKPVTHYSIVKNGAEV
complement(1128833..1129093)       hypothetical protein; NgFC460_01160                                                  N/A                 NeisseriagonorrhoeaeMKKQDRNRLSKKDRRLIKKAMLKAAAKGSDEVYKIAPGLKDGFELLGKQLNQIFVIGIWLRFFGFLMKCSDEYRQFSGLSFGRTAL
1129516..1130220                   PHAGE_Shigel_POCJ13_NC_025434: putative transcriptional regulator; NgFC460_01161; phage(gi725949713)     3.24e-38            NeisseriagonorrhoeaeMTNRDLKAIRIDNLKRFFENKKLPVKDKSLLSQLMSGKASFGEKVSRRLEEEYGMGSLYLDSVPSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDYNGYRLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWSVLD
1130380..1130919                   PHAGE_Salmon_vB_SemP_Emek_NC_018275: hypothetical protein; NgFC460_01162; phage(gi399498806)     8.69e-37            NeisseriagonorrhoeaeMLNAYDVADFFLSPFEEEDGEQISNLKLQKLLYYAQGYALAILNRPLFAENIEHWQHGPVVPCIYRTYKKYGGSPLPAAHIEPDKYADEELVVLNRVRKEQGCYTAWALRNKTHQEAPWIQTRQGEVIGIALMGEYFRHALPQTDYNFNLEKLKTAVEDSFVSVPHFNGADDLEKWLEQ
1130920..1131279                   hypothetical protein; NgFC460_01163                                                  N/A                 NeisseriagonorrhoeaeMQVLLGEDFKRALKNYPKEDRRKIAEFIAHVQQNGLSGLPGRNKSSDNVPADDPQWLEKVRFAQRHNLWHYHIGIPKYNGGRYGDLTSAYILHYTLCDGFIKIIGFDRHPPFILPDIPK
complement(1131296..1131514)       hypothetical protein; NgFC460_01164                                                  N/A                 NeisseriagonorrhoeaeMANSNSGHSKKLRAATAAAATKAKLASGEYRQFSVQGRAEDVELILAAVEKAGGSRVQALAKICRRYLEGLS
1131998..1132198                   phage associated protein; NgFC460_01165                                              N/A                 NeisseriagonorrhoeaeMNELISRINRFGTRAKDGQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
1132231..1132707                   PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; NgFC460_01166; phage(gi197085698)     1.05e-32            NeisseriagonorrhoeaeMEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
1132704..1132991                   phage associated protein; NgFC460_01167                                              N/A                 NeisseriagonorrhoeaeMSYLDQPLKHGYGNGNGSGNGDGYGNGYGKGYGSGYGNGKGDGSGSGYGNGKGDGNGSGNGDGDGNGNGSGNGSGNGDGDGNGNGSGNGSGYGNG
1133132..1133464                   phage associated protein; NgFC460_01168                                              N/A                 NeisseriagonorrhoeaeMKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESGLIEIAKKSAREFVRDADGEPYAQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
1133618..1133896                   phage associated protein; NgFC460_01169                                              N/A                 NeisseriagonorrhoeaeMKTRNIAFKFAVLAAVLAAGYAFGFAKGGGSRTAKGKPAGIAAMRMALAQKQAEVAELSAEIWLEERHLNADEEEAGCRRVHGDAEVPGGKE
1133893..1134054                   phage associated protein; NgFC460_01170                                              N/A                 NeisseriagonorrhoeaeMSFHPETAYNGGGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
1134123..1134809                   PHAGE_Pseudo_RIO_1_NC_021300: putative ssDNA binding protein; NgFC460_01171; phage(gi508178031)     1.89e-10            NeisseriagonorrhoeaeMSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKHPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGQTEYPQGNAAPAEDIEDDIPFN
1134949..1135131                   putative phage associated protein; NgFC460_01172                                     N/A                 NeisseriagonorrhoeaeMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
1135128..1135619                   PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NgFC460_01173; phage(gi374531698)     2.27e-19            NeisseriagonorrhoeaeMTALTLYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEEHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGRQVAGAKIEGRKNLQIR
1135671..1135886                   phage associated protein; NgFC460_01174                                              N/A                 NeisseriagonorrhoeaeMSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
1135997..1136980                   putative phage associated protein; NgFC460_01175                                     N/A                 NeisseriagonorrhoeaeMQTVATKPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLSLQDMRYACNQELINFAEHIVKQVQRLGLYCNTDDPANGESVLFACREASQAVAQWTKDFDDLSPNQRQLVLRPLSNLFAAYEEFLKDAPARLIAEVSAYSLAVRVAKKAMAFLELDGGLISAVGKVVNGADSRAEARRLKMPYAEFTGRILHAANLLYDVGIQADKELSAMYGKPLNPVRPRRISDVRRPMMKMLVADKGGALVRAVKDSEDVIRHCDNGAGFSCFNWTEHFKRTANLISLMHREAAA
1136977..1137207                   PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NgFC460_01176; phage(gi971749633)     1.47e-13            NeisseriagonorrhoeaeMRTHIRTCVYHDSGTKGFKHGIRHKRHGCRRGGTSVFQRGEDGKPQRVSRIRKRSATPGQAKERTKTHDVSRTQQP
1137179..1137391                   putative phage associated protein; NgFC460_01177                                     N/A                 NeisseriagonorrhoeaeMTFQGHNNRKKAGGYAEYITGGELRLLQQTACRFKAALETAAWKHYVRAIKESEPVPDAEARRKRKKQAA
1137417..1137611                   phage associated protein; NgFC460_01178                                              N/A                 NeisseriagonorrhoeaeMDSEYLDPQQCADILSVKKRTFLERYAPRPDFPARISVSKKRFWWKKEEVEGWLDRQKEKRPVM
complement(1137667..1137751)       tRNA                                                                                 N/A                 GCGGACGTGGCGAAATTGGTAGACGCACCAGATTTAGGTTCTGGTGCCGAGAGGTGTGAGAGTTCGAGTCTCTCCGTCCGCACCA
1137902..1138576                   Uncharacterised protein; NgFC460_01180                                               N/A                 NeisseriagonorrhoeaeMPAALIKDFLLTQGLKLPLDEVRAAYLTAQTVMDMGMASIDRSVLWCNDEGWKLADYLPCDDVREDALKRLFMALDSVFSRSTGVRSAAVYALMPSENAALRLVCLSQQGEGLENIWEQDGNITDVSLACRSAQSGWMNVASDVRRWLNLGELSGERNHASAAQISIPVCTESGGVLGVVHVEFECAECADTAAQAEWVALALALSEPLKQLLGITAAEGDENV
1138569..1139162                   GTP cyclohydrolase II; NgFC460_01181                                                 N/A                 NeisseriagonorrhoeaeMSELLDHVASCRLPTEWGVFTMHGFEEANGQEHVALTVGNCSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQAEGRGIIVYLRQEGRGIGLINKIRAYHLQEQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENERYLQTKADKLGHLMSE
1139330..1139530                   glycosyl transferase family protein; NgFC460_01182                                   N/A                 NeisseriagonorrhoeaeMIFSIIVPIYNVEKYLRCCVDSVLAENFADYEMILVDDGSPDGCGKICDEYAGKYPHIRVIPCVTP
1139515..1140477                   PROPHAGE_Shewan_MR-1: IS110 family transposase; NgFC460_01183; phage(gi24375433)     5.62e-09            NeisseriagonorrhoeaeMRNAVGLDISKLTFDATAIVGNAEYSAKFDNDSKGLDQFSDRLKSLGCQNLHICMEATGNYYEEVADYFAQYYSVYVVNPLKISKYAESRFKRTKTGKQDAKLIAQYCRSAQESELVKRQKPTDEQYRLLRMTAAYAQIKSECAAMKNRHHAAKDEEATKAYAQIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIPAIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPGFIKRLEEKKKPKKVIIAALMRKLAVIAYHVHKKGGDYDPSRYKSA
complement(1141110..1141469)       phage associated protein; NgFC460_01184                                              N/A                 NeisseriagonorrhoeaeMIHKPRYIKIVDENGDFTRVLRLHKFPDTSKVFYFEPMFWLKDGRLARKDSLFEVDYIYGADGCGFLPSNLTEFRKYCRKKHQKFKDDEVLVNRYAVDFLGAKEPPYDDRHVTSVKYFV
complement(1141590..1142675)       PHAGE_Ralsto_RSS1_NC_008575: hypothetical protein; NgFC460_01185; phage(gi118430720)     4.22e-31            NeisseriagonorrhoeaeMIYLFTGNMGAGKTPRVVSMILNNEDGLFKMELEDGTEADRPLYFCHIDGLDKRKFNARELAEGQIMSAPLRDVIPEGAVLIVGEAHYTYPVRAAGRPVPPYIQELTELRHHGHTVILMTRHPSQLDIFVRNLVSKHVHLERKAIGMKQYYWYKCVTSLDNPAGVSGVEAANWKPPKEAFKYYKSSSRHQKFKKKVPWAVWALIAVVGFVGWKSYGMFQVYSKATDSRIEQEAQKESVVQTMTEQTASSETAPFEHSDNLKPEDFVPTLPEKPESKPIYNTVRQVKTFEQIAGCIDGGKSDCTCYSNQGTPLKEITKIMCKEYVKNGLPFNPYKDERQRTEQAAQSAKADKPQVLVMGGKP
complement(1142685..1142975)       ribonuclease H; NgFC460_01186                                                        N/A                 NeisseriagonorrhoeaeMPLLSGLIPLLGILLKMLIVRIILATGLTFVTYAGYLAALEKFKGYTSNAINSMPSDILNLLLISGFGQGLGCLFGAFSFFIGMHAFKKLTFVFPG
complement(1142976..1144544)       virulence factor protein TspB; NgFC460_01187                                         N/A                 NeisseriagonorrhoeaeMNSFIKSTPIVLILILCSSNSYSEPVRLEKSQIKFQSSNNLKSIGFKLDSSSNSFSKFTEAANFEHIPTGAKARINAKITASVSRAGVLSGVGKLVRQGAKFGTRAVPYVGTALLAHDVYQTFKEDIQARGCRYDPETDKFVKGYEYANCLWYEDERRINKTYGCYGVDSSIMRLMPDRSRFPEVKQLMESQMERIARPFWDKRKEEIPKDTALKWRLFPFSHCEFFWNGGGCFVRNGDNLIHRVYFKLERNPKYKEEMDAKKPEEILSLKVDADPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVAATFGRDAQGNTTADVQVIPRPDLTPASAEAPHAQPLPEVSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQPGTSPDSPAVPDRPNGRHRKERKQGEDGGLSCDYFPEILACQEMGKPSDRMFHDISIPQVTDDKTWSSHNFLPSNGVCPQPKTFHVFGRQYRASYEPLCVFAEKIRFAVLLAFIIMSAFVVFGSLGGE
complement(1144486..1144803)       phage associated protein; NgFC460_01188                                              N/A                 NeisseriagonorrhoeaeMNKPFITQAQLALYKYQPSSEYFGQSMAFIAQKEFEEFVNNVKEYDILESFSYFLNKRVAHNIWKIYFSDESVIFIRKSEENGKTVHEFVYQEYTDSSDFNSMFE
complement(1144931..1145209)       putative phage associated protein; NgFC460_01189                                     N/A                 NeisseriagonorrhoeaeMYCQVGNKCLEKHRAENLYFSLVVPRIKENGQIIRPEYNGSMWKMSDGQPLRLSLAECSPKDNLQSGLETGRIVFGVLASVYFVSLLKKVLK
complement(1145216..1145434)       phage associated protein; NgFC460_01190                                              N/A                 NeisseriagonorrhoeaeMKFINTCRKYGAKLAVVTAAPLALAAQANAALPETAKNALEAAKADGMEAGWIVVGVFAALFVFSIVKRVMK
complement(1145508..1145705)       phage associated protein; NgFC460_01191                                              N/A                 NeisseriagonorrhoeaeMQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEEAVNAGLEEIGNQCEFVVFGFLKD
complement(1145710..1146000)       phage associated protein; NgFC460_01192                                              N/A                 NeisseriagonorrhoeaeMNIQLQGHIVGVKKFNGQIEGKSFDYCRLIVATPLDSSQGNALGSSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQLVKKG
complement(1146045..1147376)       PHAGE_Ralsto_RSS1_NC_008575: hypothetical protein; NgFC460_01193; phage(gi118430713)     2.87e-21            NeisseriagonorrhoeaeMEDKQGMTKEVAGVMTEAPADGRKPTTASNLPPPPYLTGGGTETETAGRVQEVFECYETYITDGKGNLLGVPLRRGVSDSAFIDQITFSIHEDTFFHVYGLSFDLFDDDDFIRAASAKMEEIFGFGIIEKAKHSGGRFYEGCWLMGTENAQYGRVHYGGQRETMLVELTAVGCNAANIGWESRLFDFLTNAIRPKITRVDIAKDFFNGEYSPNQAREDRNKGLFTCHHVKPKGECLGSDWEEEDDETKMTSGKTYGIGSRESSKYVRIYEKGKQLGDKTSTWTRFEIEFKAKDIVIPFEVLQTPGEYFGGAYPICERFTGSANRIEAVKSKIMIDFDTYIERLKKQIGRGINASKAVFPDKSKQELFEVLEPKHDFLPKKLSFENYDCSEAKLTPLHEIPSVLKFDQYGMWMDRYIQRQKTGEEQRYLEKMYDKYANLPISWA
complement(1147515..1147937)       PHAGE_Burkho_KL3_NC_015266: gp46; NgFC460_01194; phage(gi327198091)                  9.07e-40            NeisseriagonorrhoeaeMTDIFTPSKRSFVMSKIHSKETKPEVLVRKFLFSQGFRYRKNDKRYAGKPDIVLPKYKTVVFIHGCFWHGHSCNKGHIPKSNMDFWLEKITKNRERDIKNETELEKIGFKVIVVWECELKNKAICRERLNRLVEEIKDAV
complement(1147943..1148539)       Protein of uncharacterised function; NgFC460_01195                                   N/A                 NeisseriagonorrhoeaeMKGESGVDIENWKNKLPEKEREPVEVILNRLEDSELTNKEQAEVISALHSIIPEYPYYHWRHLHQDLHTACNDFYNEKKDYLSAAIEAVKVFEDKVQKQTGLHSIDGRELIEKAFGSKKSMLLLTNNKTQAEQNLEDGLEQLACGTWTGFRNPVQHELRANLSPSIFNDKDALDLISLVSYLLRKVEQTKKRAKPTSP
complement(1148729..1149586)       HSP90 family protein; NgFC460_01196                                                  N/A                 NeisseriagonorrhoeaeMSEEKLKMSFEPTVIEHLGVKMYSHTVPAIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLRIGRNRREEKQASPCGRIPTGKKGLGKLALFRLGNKIEISTIQGNERVTFTLDYAEIKKSERIYQPEFQKESVKPNTENGTTITLTELTKKQGYPLDNYVGHLSRLFDFPAQDFKIKVSLNGSEPRIIDGNLKYNLVTPQFEWEYQDLATNISSLSSKFEQYEYSGLIQGKFITTEKPLKNNMKGITLFANGRMVNMPEFFTDSESSHF
complement(1149600..1150058)       PHAGE_Halovi_HGTV_1_NC_021328: AdoMet-MTase; NgFC460_01197; phage(gi509140530)       4.63e-11            NeisseriagonorrhoeaeMENGFPKIMAGHQDETDFMHSCAGLSDINLKRLALIPKNGGNRLAFAHIPELQLECFIGKDNSFKDTFGRLWWDKPAPTITTKFFSISNGRFAHPEEDRALSLREGATLQSFPRNYVFKAGSRDKIARLIGNAVPPMYAEKIGRAIVDNIEC

#### region 5 ####
1619270..1620325                   PHAGE_Synech_S_SSM7_NC_015287: transaldolase-like protein; NgFC460_01653; phage(gi326783962)     2.87e-06            NeisseriagonorrhoeaeMTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNLTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIQVVASFFISRVDSALDATLPDRLKGKTAIALAKAAYQDWEQYFTAPEFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAFIDHGTAKATLTESADEARARLAEIAALGIDVETLAARLQEDGLKQFEEAFEKLLAPLV
1620337..1620471                   Uncharacterised protein; NgFC460_01654                                               N/A                 NeisseriagonorrhoeaeMPSERLSDGIALLTGHSAAYQGSALKILMGKKLMHDITRQHKRK
1620476..1620766                   Uncharacterised protein; NgFC460_01655                                               N/A                 NeisseriagonorrhoeaeMAKALEIISPDEIYSDLIFKDPVPPHTIYTELMKLVGRNAGNERIADRAFDFFSPALMDDSATEEQYNALYDLTLLEEPGMELDKDEITALINSLK
1620783..1621670                   glutamyl-Q tRNA(Asp) synthetase; NgFC460_01656                                       N/A                 NeisseriagonorrhoeaeMYTGRFAPSPTGLLHIGSLLTAVASYADARSNGGKWLVRMEDLDPPREMPGAASHILHTLEAFGFEWDGEVTYQSRRYALYEETLYRLKTAGLVYPCHCNRKDWQAGARRGTDGFVYNGRCRHPGQRPALQGKQPSWRIRVPDRDIGFSDGIVGSYTQNLARDIGDFVLFRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLGVPTPQYAHLPLLTNAQGQKWSKQTLAPALDSNRREQLLRQVFRYLKLPEAPETDRPAELLDWAVAHWDMDKVPKHAITAP
complement(1621740..1622786)       tRNA-dihydrouridine synthase A; NgFC460_01657                                        N/A                 NeisseriagonorrhoeaeMFELKECENLMINKELIEHKGKRRLCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMHDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDNRAPIEYADLVQRLYTYSQVQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLKDNDGGLIFEAWKEVERANTRE
1622644..1622655                   attL                                                                                 N/A                 TTTCGGGTAATC
1622876..1624030                   PHAGE_Burkho_AH2_NC_018283: integrase; NgFC460_01658; phage(gi399529076)             7.99e-56            NeisseriagonorrhoeaeMATITKRRNPSGETVYRVQVRVGKKGYPAFNESRTFSKKALAVEWGKKREAEIEAGPELLFKRGKVKMMTLSEAMRKYLNETLGAGRSKKTGLRFLMEFPIGGIGIDKLKRSDFAEHVMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNMVAKSAIRDRLPTTEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDDWHKNDCTRPVRDLKNPNGSTGNNKEFDILPMALPVIDELPEESVRKRMLANKGIADSLVPCNGKSVSAAWTRACKVLRIKDLRFHDLRHEAATRMAEDGFTIPQMQRVTLHDGWNSLQRYVSVRKRSTRLDFKEAMMQAQSDIKSGK
complement(1624080..1624346)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; NgFC460_01659; phage(gi428782341)     6.77e-06            NeisseriagonorrhoeaeMNISKEQGLLIAYGGRPYIPPREVHKDFFAHIGFNAFKASGVRCELPFPIFRLSDSRKSEYFVSVRELAKAIADKEEKAKSEYRKFRS
complement(1624454..1625401)       PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; NgFC460_01660; phage(gi970580043)     2.34e-116           NeisseriagonorrhoeaeMTFQGHNNRKKAGGYAEYITGGSLRRLVAAKVRRYCGEHPGVFDGAAGSGQLEQYIEPSDFRAVEIQAEACKALLQNYPAAKVYNTSLFLYTDGEPQDCTVMNPPFSIKLKDLSEDEKSRIAQEYPWKKSGVADEIFVLKGLENARRFGFFILFPGIAYRKSEQRFREIIGNRLAELNRIQNAFEDTPIEVLLLVIDKDKTDGGCIRELYDCKTDTLLAADTWQIEPDLWQTVQEPAPPKEKEDPVLLEHECRDAAAKRIARELRFSKMVNEIEGWPHAEFDGFCDRLCNLIQAEKYGKKHYFPCSLPLFGGAAG
complement(1625373..1625603)       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; NgFC460_01661; phage(gi971749633)     3.59e-13            NeisseriagonorrhoeaeMRTHIRTCVYHDSGTKGFKHGIRHKRHGCRRGGTSVFQRGEDGKPQRVSRIRKRSATPGQARERTKTHDVSRTQQP
complement(1625600..1626583)       putative phage associated protein; NgFC460_01662                                     N/A                 NeisseriagonorrhoeaeMQTVATKPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLSLQDMRYACNQELINFAEHIVKQVQRLGLYCNTDDPANGESVLFACREASQAVAQWTKDFDDLSPNQRQLVLRPLSNLFAAYEEFLKDAPARLIAEVSAYSLAVRVAKKAMAFLELDGGLISAVGKVVNGADSRAEARRLKMPYAEFTGRILHAANLLYDVGIQADKELSAMYGKPLNPVRPRRISDVRRPMMKMLVADKGGALVRAVKDSEDVIRHCDNGAGFSCFNWTEHFKRTANLISLMHREAAA
complement(1626694..1626909)       phage associated protein; NgFC460_01663                                              N/A                 NeisseriagonorrhoeaeMSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
complement(1626961..1627452)       PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NgFC460_01664; phage(gi374531698)     2.27e-19            NeisseriagonorrhoeaeMTALTLYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEEHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGRQVAGAKIEGRKNLQIR
complement(1627449..1627631)       putative phage associated protein; NgFC460_01665                                     N/A                 NeisseriagonorrhoeaeMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
complement(1627771..1628457)       PHAGE_Pseudo_RIO_1_NC_021300: putative ssDNA binding protein; NgFC460_01666; phage(gi508178031)     1.89e-10            NeisseriagonorrhoeaeMSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKHPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGQTEYPQGNAAPAEDIEDDIPFN
complement(1628526..1628687)       phage associated protein; NgFC460_01667                                              N/A                 NeisseriagonorrhoeaeMSFHPETAYNGGGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
complement(1628684..1628962)       phage associated protein; NgFC460_01668                                              N/A                 NeisseriagonorrhoeaeMKTRNIAFKFAVLAAVLAAGYAFGFAKGGGSRTAKGKPAGIAAMRMALAQKQAEVAELSAEIWLEERHLNADEEEAGCRRVHGDAEVPGGKE
complement(1629116..1629448)       phage associated protein; NgFC460_01669                                              N/A                 NeisseriagonorrhoeaeMKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESGLIEIAKKSAREFVRDADGEPYAQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
complement(1629589..1629876)       hypothetical protein; NgFC460_01670                                                  N/A                 NeisseriagonorrhoeaeMSYLDQPLKHGYGNGNGSGNGDGYGNGYGKGYGSGYGNGKGDGSGSGYGNGKGDGNGSGNGDGDGNGNGSGNGSGNGDGDGNGNGSGNGSGYGNG
complement(1629873..1630349)       PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; NgFC460_01671; phage(gi197085698)     1.05e-32            NeisseriagonorrhoeaeMEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
complement(1630382..1630582)       phage associated protein; NgFC460_01672                                              N/A                 NeisseriagonorrhoeaeMNELISRINRFGARAKDGQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
complement(1630904..1631464)       hypothetical protein; NgFC460_01673                                                  N/A                 NeisseriagonorrhoeaeMDIKTEEAYRLSFQHIQSHDVLAACRTVANYELSQPRPRGLFSGISAQEYWESYPCNEDAEILKSILLDSPEILDGISGGDMEMARIMAAFNFIWGLSHFPKWLHRHEFASTPLDDSAVPAMLLFHAQSRQELKEYEEVELSCCPDGCEFCKSEDGKIYKSSDAPVLPHAHCTHEQGCRCCYLPVI
complement(1631464..1632162)       PHAGE_Haemop_Aaphi23_NC_004827: putative CI protein; NgFC460_01674; phage(gi31544010)     6.43e-67            NeisseriagonorrhoeaeMNRVDRIKNLIADRFNGNQAEFSRAINKAPAQINQWLNGYRNIGDGVAAQIEIALGLPRGWVDGNDKPGIPVDSIKSNATVIGSVDAWDSKTPLSDDDCEVPFYKDVCLSAGNGFSDEIEDYNGYKLRFSKSTLRRHGINPDDVVCVSADGDSMEPVFPDGATLGINTADKMIKDGKIYAINHSGLLRTKILQKLPDNQVRIKSYNPEYKDETASLDSLTVIGRVFWWSVLD
1632276..1632506                   PHAGE_Entero_c_1_NC_019706: prophage antirepressor; NgFC460_01675; phage(gi428781783)     5.60e-07            NeisseriagonorrhoeaeMDLRDYCAIRGNQSDLARKTGISPSFIHQIAKGLKPVPIQSAALIEKSTNGRVTRKEMFPDTWHLIWPELADDQPK
1632609..1633508                   PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; NgFC460_01676; phage(gi100046)     6.80e-17            NeisseriagonorrhoeaeMKYIPNSFQIANAVVDDFLCRMSGNAWKCYAVIVRKTTGWQKEIDYISVSQFKNLTGIKTDVTVADALKELVELNLIASVKRHGQVTGYRINMPEPSPENGGTPPPENGGTATPKNWVHPKNGTTPKNWGVLPPENGGTTTPKNWGSTKHTTKPTNTKHSISASAAADAPLSAEPPESGKRAPAAKAKKTGRHETELSLLADYGITGQVAADFLQVRKAKRQPLTETAMRLIAADAEKCGMTALQAAEYAIASGWGSFRADWLQNKTFGRSGNRGGPTHNQTAAVPDAGSYGDMPTTDF
1633523..1634305                   PHAGE_Vibrio_X29_NC_024369: IstB-like ATP binding protein; NgFC460_01677; phage(gi658311189)     3.62e-44            NeisseriagonorrhoeaeMALRNASDFLGAYGGGVRVERRQCAEHGGYAAKSVLRGVWTGCPACRKLEAADEMAAYAETLRRGAMRDALEKRIGRSGIAPRFRNCRIENYAVSDSIPGMARAKAAAAEYAANFADVLQTGRSMIFSGRRGTGKNHLACGIAREVIAAGKSALVITVGDMLRTVKDSFGGGGGEAGAVGVFVKPDLLVLDEFGAGSLSETDGRILFSVVNARYERLMPMLVLTNLTAEAFRENTDARIRDRLRDGGGKLIPFDWESYRA
1634620..1635114                   PHAGE_Mycoba_Gengar_NC_031035: hypothetical protein; NgFC460_01678; phage(gi100045)     2.41e-08            NeisseriagonorrhoeaeMTVRNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRADAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAGGGI
1635291..1635440                   phage associated protein; NgFC460_01679                                              N/A                 NeisseriagonorrhoeaeMDTLLSIITALSFAGAATLAVWLLVEAADAVLRRKRDGKGEDDFDGFGY
1635469..1635750                   putative phage associated protein; NgFC460_01680                                     N/A                 NeisseriagonorrhoeaeMAEEMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
1635741..1636121                   PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NgFC460_01681; phage(gi148609431)     2.31e-08            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGAGAMPSEGAVAVYVRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVAGGGLAVEVGELDEK
complement(1636450..1637412)       PROPHAGE_Shewan_MR-1: IS110 family transposase; NgFC460_01682; phage(gi24375433)     5.98e-09            NeisseriagonorrhoeaeMRNAVGLDISKLTFDASAMVGKTEHSAKFDNDSKGLDQFSDRLKSLGCQNLHICMEATGNYYEEVADYFAQYYSVYVVNPLKISKYAESRFKRTKTGKQDAKLIAQYCRSAQESELVKRQKPTDEQYRLSRMTAAYAQIKSECAAMKNRHHAAKDEEAAKAYAQIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIPAIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPGFIKRLEEKKKPKKVIIAALMRKLAVIAYHVHKKGGDYDPSRYKSA
complement(1637922..1638281)       phage associated protein; NgFC460_01683                                              N/A                 NeisseriagonorrhoeaeMIHKPRYIKIVDENGDFTRVLRLHKFPDTSKVFYFEPMFWLKDGRLARKDSLFEVDYIYGADGCGFLPSNLTEFRKYCRKKHQKFKDDEVLVNRYAVDFLGAKEPPYDDRHVTSVKYFV
complement(1638402..1639487)       PHAGE_Ralsto_p12J_NC_005131: ORF7; NgFC460_01684; phage(gi156535142)                 3.88e-13            NeisseriagonorrhoeaeMIYLFTGNMGAGKTPRVVSMILNNEDGLFKMELEDGTEADRPLYFCHIDGLDKRKFNARELAEGQIMSAPLRDVIPEGAVLIVGEAHYTYPVRAAGRPVPPYIQELTELRHHGHTVILMTRHPSQLDIFVRNLVSKHVHLERKAIGMKQYYWYKCVTSLDNPAGVSGVEAANWKPPKEAFKYYKSSSRHQKFKKKVPWAVWALIAVVGFVGWKSYGMFQVYSKATDSRIEQEAQKESVVQTMTEQTASSETAPFEHSDNLKPEDFVPTLPEKPESKPIYNTVRQVKTFEQIAGCIDGGKSDCTCYSNQGTPLKEITKIMCKEYVKNGLPFNPYKDERQRTEQAAQSAKADKPQVLVMGGKP
1653433..1653444                   attR                                                                                 N/A                 TTTCGGGTAATC

#### region 6 ####
1658307..1658831                   PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; NgFC460_01708; phage(gi410491500)     8.90e-47            NeisseriagonorrhoeaeMPISIRRNLSDGTTHKPLIITPDTTQRHDMDTPVYLYTDGACKGNPGAGGWGVLMRYGSREKELFGGEAQTTNNRMELTAVIEGLKSLKRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWQELDALVGQHQVSWTWVKGHAGHAENERADDLANRGAAQFS
complement(1659162..1660124)       PROPHAGE_Shewan_MR-1: IS110 family transposase; NgFC460_01709; phage(gi24375433)     5.98e-09            NeisseriagonorrhoeaeMRNAVGLDISKLTFDASAMVGKTEHSAKFDNDSKGLDQFSDRLKSLGCQNLHICMEATGNYYEEVADYFAQYYSVYVVNPLKISKYAESRFKRTKTGKQDAKLIAQYCRSAQESELVKRQKPTDEQYRLSRMTAAYAQIKSECAAMKNRHHAAKDEEAAKAYAQIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIPAIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPGFIKRLEEKKKPKKVIIAALMRKLAVIAYHVHKKGGDYDPSRYKSA
complement(1660634..1660993)       hypothetical protein; NgFC460_01710                                                  N/A                 NeisseriagonorrhoeaeMIHKPRYIKIVDENGDFTRVLRLHKFPDTSKVFYFEPMFWLKDGRLARKDSLFEVDYIYGADGCGFLPSNLTEFRKYCRKKHQKFKDDEVLVNRYAVDFLGAKEPPYDDRHVTSVKYFV
complement(1661114..1662199)       PHAGE_Ralsto_p12J_NC_005131: ORF7; NgFC460_01711; phage(gi156535142)                 3.88e-13            NeisseriagonorrhoeaeMIYLFTGNMGAGKTPRVVSMILNNEDGLFKMELEDGTEADRPLYFCHIDGLDKRKFNARELAEGQIMSAPLRDVIPEGAVLIVGEAHYTYPVRAAGRPVPPYIQELTELRHHGHTVILMTRHPSQLDIFVRNLVSKHVHLERKAIGMKQYYWYKCVTSLDNPAGVSGVEAANWKPPKEAFKYYKSSSRHQKFKKKVPWAVWALIAVVGFVGWKSYGMFQVYSKATDSRIEQEAQKESVVQTMTEQTASSETAPFEHSDNLKPEDFVPTLPEKPESKPIYNTVRQVKTFEQIAGCIDGGKSDCTCYSNQGTPLKEITKIMCKEYVKNGLPFNPYKDERQRTEQAAQSAKADKPQVLVMGGKP
complement(1662209..1662499)       membrane protein; NgFC460_01712                                                      N/A                 NeisseriagonorrhoeaeMPLLSGLIPLLGILLKMLIVRIILATGLTFVTYAGYLAALEKFKGYTSNAINSMPSDILNLLLISGFGQGLGCLFGAFSFFIGMHAFKKLTFVFPG
complement(1662500..1663294)       virulence factor protein TspB; NgFC460_01713                                         N/A                 NeisseriagonorrhoeaeMDAKKPEEILSLKVDADPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVAATFGRDAQGNTTADVQVIPRPDLTPASAEAPHAQPLPEVSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQPGTSPDSPAVPDRPNGRHRKERKQGEDGGLSCDYFPEILACQEMGKPSDRMFHDISIPQVTDDKTWSSHNFLPSNGVCPQPKTFHVFGRQYRASYEPLCVFAEKIRFAVLLAFIIMSAFVVFGSLGGE
1663634..1663918                   phage associated protein; NgFC460_01714                                              N/A                 NeisseriagonorrhoeaeMKLLAALIPLLMSVAGRILTALGLMAVTYAGVDRLAAHFQQAITHSITGAPQAMLQLFYISGGGTVLNILFGAIAFILSFKQMTKLATSIGKKK
1663919..1665106                   PHAGE_Ralsto_p12J_NC_005131: ORF7; NgFC460_01715; phage(gi156535142)                 7.64e-24            NeisseriagonorrhoeaeMAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGVRRKVFTNIKGLKIPHTHIETDAKKLPKSTDEQLSAHDMYEWIKKPENVGAIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVKRHYHIAANKMGLRTLLEWKVCADDPVKMASSAFSSIYTLDKKVYDLYESAEIHTVNKVKRSKWFYALPVIILLIPLFVGLSYKMLGSYGKKQEEPAAQESAATEQQAVLPDKTEGESVNNGNLTADMFVPTLPEKPESKPIYNGVRQVRTFEYIAGCIEGGRTGCTCYSHQGTALKEVTELMCKDYVKNGLPFNPYKEESQGQEVQQSAQQHSDRAQVATLGGKPQQNLMYDNWEERGKPFEGIGGGVVGSAN
1665321..1666265                   PROPHAGE_Escher_CFT073: transposase; NgFC460_01716; phage(gi26248352)                3.32e-09            NeisseriagonorrhoeaeMNIIGPDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIKGNRIRKVYIGMEATGIYYEKAADMLSSYYTVYVINPLKINDYGKSRFNRTKTDKADSNLIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLQQQQKQIKNRLHSTEEDFIRNIHQDLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIGKDTASVLYAQLTEKHFKTANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINNLKKAGKPKMVIIVAIMRKLAKPAYYIVKTGQPYDAERH
1666568..1667107                   PHAGE_Pseudo_vB_PaeS_PAO1_Ab18_NC_026594: putative baseplate hub subunit and tail lysozyme; NgFC460_01717; phage(gi764160573)     1.57e-50            NeisseriagonorrhoeaeMTELPWIAEARRHIGLKEIPGAKHNPTIVQWLKETGGFPGAAKSWYFEDETPWCGLFVGHCLGKAGRAVIRDWYRAKAWSMSGLTKLEAPAYGCIAVKPRRGGGHVFFVVGKDAEGRILGLGGNQGNMVSIIPFDPADIDGYFWPSKLIGGKAVPSSPAEGRYRLTAAAATAKQGAGEA
1667108..1667452                   PHAGE_Entero_vB_KleM_RaK2_NC_019526: hypothetical protein; NgFC460_01718; phage(gi422936900)     2.32e-09            NeisseriagonorrhoeaeMIGALLKNWKPLLILSAIAFFAVSWQLDRAAQYRRGYGAAVSEVSERLKAAAVEHAEHARKSSAAYQAQKAAREEKERVRYVQTLKIIEKPVYRNACFDADGVRELNAAVDDGG
1667391..1667609                   PHAGE_Nitrin_1M3_16_NC_024217: hypothetical protein; NgFC460_01719; phage(gi643655216)     8.31e-05            NeisseriagonorrhoeaeMPVLMLTACANSTPPLTTAVKPPADLVRPCPKLPYLEGNTGADVLPWSLQVIGLYKDCKARHGALVRALGAD
1667969..1668349                   phage associated protein; NgFC460_01720                                              N/A                 NeisseriagonorrhoeaeMPLKFQPRERSVIMCDFRGYEEPEMVKKRPVVVIARNRHNGKLVTVVPLSSTEPVPLADCHHKMSENPLPDKPHIQCRAKCDMTATVGLARLDRYKPKGRDRCIPIISEEDFQAVKTAVAKAFKLY
complement(1668554..1669396)       PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NgFC460_01721; phage(gi31544021)     3.60e-41            NeisseriagonorrhoeaeMQNTISVFSFKSQNVRTQILGAEPWFCLGDVAEILQIQNARQLPLKDQGIQKSSVATKKGNQELLFINEPNLYRVIFRSRKAEAVKFQDWIFEEVIPQIRKTGGYQITPKTTADDRTGLRRAVAALAGCKGIDYSSAYSMIHQRFNVEAIEGIPADKLLEAVAYVHALTLHTGLAGEVPDREPLPAPQPALPISGNALADIAAMVYYGTWMIESGKDVSLPLKQLGCKQAVTMWTVWHETRPILKRSAAALEVLRGYADKDASGRIAACLEGIYGKAAVR
complement(1669895..1670071)       putative phage associated protein; NgFC460_01722                                     N/A                 NeisseriagonorrhoeaeMNPTKQSKKSYESKRVLKHVSFNTEKEANLLEFSNNLDFSKWVKEKLKHELELEKLKK
