gi|00000000|ref|AP018410.1|  Mycobacterium pseudoshottsii JCM 15466 DNA, complete genome. 6061597, gc%: 65.64%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1369727..1370353                   PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; MPSD_12630; phage(gi16129761)     4.18e-12            MycobacteriumpseudoshottsiiJCM15466MTIILALDTSTPAVTAGVAQLTGSECVALAERVTVDARAHAERLTPNVLAALAGAALTMADLNAVVVGCGPGPFTGLRAGMATGAAYGHALDIPVYGVCSLDAIGGLTTGDTLVVTDARRREVYWARYRDGVRTHGPAVNAPGDVDPGTAHAVAGSPEHAGLFDLPRCEPSYPTVAGLAAAVNWAQDPAPLVPLYLRRPDAKPLAARP
1370350..1370826                   PHAGE_Salmon_SPN3US_NC_027402: putative GCN5-related N-acetyltransferase; MPSD_12640; phage(gi849122638)     1.80e-05            MycobacteriumpseudoshottsiiJCM15466MTADLGPVTIGALTRADARRCAELEAQLFDGDDPWPEVAFERELASGRNHYVGARCADNLVGYAGVSRLGRVAPFEYEIHTIGVDPAYQGRGIGRRLLDELLAFADGGVVFLEVRTDNEPAIALYRSVGFEQVGLRRRYYRVSGADAYTMRRDPGGAR
1370827..1371858                   PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; MPSD_12650; phage(gi16130960)     4.09e-73            MycobacteriumpseudoshottsiiJCM15466MPGTVILAIETSCDETGVGITRLEADGTLTLLADEVASSVDEHVRFGGVVPEIASRAHLEALGPAMRRALTTAGIVRPDVVATTIGPGLAGALLVGVAAAKAYAAAWGVPFYAVNHLGGHLAADVYEHGPLPECVALLVSGGHTHLLHVRSLGEPMVELGAAVDDAAGEAYDKVARLLGLGYPGGKVLDDLARSGDPDAIVFPRGMTGPSDDPCAFSFSGLKTAVARYVEAHPDFRPADVAAGFQEAVADVLTRKAVRAATGLGVSTLLIAGGVAANSRLRELATQRCSEAGLTLRIPRPRLCTDNGAMIAAFAAHLVAAKAAPSPLDVPSDPGLPVVKGKVG
1372172..1372474                   PHAGE_Bacill_0305phi8_36_NC_009760: GroES; MPSD_12660; phage(gi156564025)            4.34e-17            MycobacteriumpseudoshottsiiJCM15466MAKVNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYGGEEYLILSARDVLAVVSK
1372567..1374186                   PHAGE_Cellul_phi38:1_NC_021796: chaperonin GroEL; MPSD_12670; phage(gi526177556)     5.35e-84            MycobacteriumpseudoshottsiiJCM15466MSKLIEYDETARRAMEAGVDKLADTVRVTLGPRGRHVVLAKSFGGPTVTNDGVTVARDIDLEDPFENLGAQLVKSVATKTNDVAGDGTTTATVLAQALVKTGLRLVAAGINPIALGSGIGKAADAVSEALLASATPVSGKDAIAQVATVSSRDQLIGDLVGEAMSKVGHDGVVSVEESSTLGTELEFTEGVGFDKGYLSAYFVTDFDAQQAVLEDPLILLHQDKISSLPDLLPLLEKVAESGKPLMIIAEDIEGEALATLVVNSIRKTLKAIAVKSPYFGDRRKAFLQDLAAVTGAEVVNPDAGLVLREVGLEVMGSARRVVVSKDDTIIVDGGGAPEAVEARVNLLRSEIDRSDSEWDREKLGERLAKLAGGVAVIKVGAATETELKKRKESVEDAVAAAKAAVEEGIVAGGGSALIQARNALKDLRASLSGDEAVGVDVFSEALAAPLYWIATNAGLDGSVVVNKVSELPAGHGLNAATLTYGDLAADGIVDPVKVTRSAVLNASSVARMVLTTETAIVDKPAEPEDDGHGHHGHAH
1374437..1375657                   hypothetical protein; MPSD_12680                                                     N/A                 MycobacteriumpseudoshottsiiJCM15466MLWQGPSPRVGELIRQGAKAVLDGSQQWLDEYDRVTMAANPAIADDPVLAEATRHSIRSSLIHWAAANVSNPGAPVAPNLGPEPLSIARDMVRRGLDPFTFRIAQTVGWRLWMGVAFGLTSDPDELRELFEVTYRSISEFVEATSAGIAAQMQRERDELARGTHAERREVTALILDGAPISRQRAEARLGYALNRTHTAAVIWSDEPDGDLNRLDRVVDAFGRAADFARPLTVIAGAATRWVWVANAANATLDVEQVEQAVRDVPGARIAIGAAATGIEGFRRSHLEALTTQRMVAGLNSRQRVALFADIQLIALIAQNPEAANDFIKNTLGDFESAGAELHKTVLTFVNEQCSIGRTTKVLYTHRNTLLRRLDRAQQLLPRPLGHSSVHVAVALEALQWRGNPPA
complement(1375654..1375926)       hypothetical protein; MPSD_12690                                                     N/A                 MycobacteriumpseudoshottsiiJCM15466MGRRRQAPRAACTDPVDGVAPGDRVDLPPPANRMDRMGPKLARPEPRGGPAESQDPPPPAGTPGWAGSAEWVGWDDTSRPGSPSPETRIA
complement(1376388..1376981)       hypothetical protein; MPSD_12700                                                     N/A                 MycobacteriumpseudoshottsiiJCM15466MFPGQLNSFGVGNSGTGNLGFGNAGSGNAGFGNSGLLNTGFGNAGSINTGGFNGNNLNTGFLNSGEVNTGIGNSGHINTGFLNAGNVNTGIGNATNACEVGLTATDSSGFFNTGYGVSGFGNAADESSYGHGVSGFGNTAVGTAFEVGVSSGFFNTGYSEAIGPFAAGQVSGFNSGFFNWGTANSGLFSLSKLAIKS
complement(1377167..1378213)       PROPHAGE_Shewan_MR-1: transposase, putative; MPSD_12710; phage(gi24373689)           3.31e-25            MycobacteriumpseudoshottsiiJCM15466MALLAIAVLATAAGMRGYAGFATWAATAPDDVLAQLGVRFRRPSEKTFRAVLSRLDPADLNARMGSYFTAHVASSDPSGLVPIALDGKMLRGALRAKATATHLVSVFAHRARLVLGQLAVAEKSNEIPCVRALLTLLPGSLRWLVTVDAMHTQVVTAKLICATLKSHYLMIVKSNQAKIFARITALPWAEVPTAATDDSRGHGRVETRTPQIITAARGIGFPYAKQIIRITRERLITATDQRSVEVVYAICSLPFEHARPTAIMTWMRQHWGIENSLHWIRDVTFDEDRQRAHTGNGAQVLATLRNTAINLHRLNGADNIAEACRITALTANRRLDLLNPQSPSSQAC

#### region 2 ####
6050010..6050597                   PHAGE_Sinorh_phiM9_NC_028676: DNA-directed RNA polymerase specialized sigma subunit; MPSD_56060; phage(gi966199376)     4.70e-07            MycobacteriumpseudoshottsiiJCM15466MAFGGKRQRRDTARQRTDAELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRCARGRARLARLLSYLDADINAVDMN
6050673..6051374                   anti-sigma-M factor RsmA; MPSD_56070                                                 N/A                 MycobacteriumpseudoshottsiiJCM15466MNEAEDETDTDPALTVELLADLQAGLLDDETAAQVRRRIRTDPQAAATLEALQRVRRDVAQAGTDTSGLGDPPPHLPTRITDAVRSATSGGPTAAHAARPRPNSNKILAGIAGLIALIAAIGLGTAALITAPGPTPSGPPTAMHITVSTPPPVIPLSHDQVLDLLQRAPDYGPFADPSRRASCLSGLGYPASTPILGAQPVDINARPGVLLVLAGRCPRRSGGLCGRAQLQRG
6051513..6052511                   PHAGE_Bacill_G_NC_023719: gp344; MPSD_56080; phage(gi593777800)                      3.15e-77            MycobacteriumpseudoshottsiiJCM15466MTTDSSADATIHDVIVIGSGPAGYTAALYTARAQLAPLVFEGTSFGGALMTTTEVENYPGFREGITGPELMDEMREQALRFGADLRMEDVQSVSLDGPIKSVVTSDGETHRARAVILAMGAAARYLHVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMINRAQANDKIRILTNKIVLAVDGETTVTGLQLRDTVTGEETTLPVTGVFVAIGHEPRSSLVRDAVDVDPDGYVLVNGRTTGTSLEGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEHEATGDADSTDTLIGAQQ
6052508..6052861                   PHAGE_Dinoro_DFL12phi1_NC_024367: putative host-like protein; MPSD_56090; phage(gi658311036)     6.80e-14            MycobacteriumpseudoshottsiiJCM15466MTDSEKSSATIEVSDASFSTEVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERADNLTVAKLDVDANPETARNFQVVSIPTMILFKDGEPVKRIVGAKGKAALLRELSDAVPNLG
6052993..6054213                   PHAGE_Bacill_AR9_NC_031039: ss-DNA binding protein; MPSD_56100; phage(gi100271)      1.91e-12            MycobacteriumpseudoshottsiiJCM15466MPSPRREDGDTLRCGDRSAAVAEIRAALAALGMLDNPDEDLSTGRHIALELFDPELDHAVRAFQQHRGLLVDGIVGEATYRALREASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFYTGLVDGYFGLQTHNALMSYQREYGMSADGICGPETLRSFYFLSSRVSGGSPHAIREEELVRRSGPKLSGKRIIIDPGRGGSDRGVIAHGEAGPVSEADVLWDLASRLEGRMSAIGMETFLSRPANTSPSDAERAATANAVGADLMISLRCETQTSVSANGVASFHFGNSHGSVSTIGRNLADFIQREVVARTGLQDCRTHGRTWDLLRLTRMPTVQVDIGYITNPLDHELLVSTQTRDAIAEGILAAVKRLYLLGKNDRPTGTFTFAELLAHELSVERASRLSGS
complement(6054253..6055017)       hypothetical protein; MPSD_56110                                                     N/A                 MycobacteriumpseudoshottsiiJCM15466MLQYRTEARRLVSARITALRLEAFEQLPKHARRCVFWEVDPATLGNNDHLADPEFEKEAWLSMVMLEWGSCGQIATAIPDERSDAEPACLGYVFYAPPRAVPRAHRFPSGPVSADAILLTSMGIEAGEDTDDLSHSLIAGVIDELVRRGVRAVEAFGRTTAAAELQDSNAVTPELQPVLAALGDCSVEHCMLDADFLIDVGFVVVGPHPYFPRLRLELDKGLGWKAEVEAALERLLENAQLQQPVGAGAASCSP
complement(6055456..6056439)       PHAGE_Agroba_7_7_1_NC_019519: hypothetical protein; MPSD_56120; phage(gi435844368)     1.44e-09            MycobacteriumpseudoshottsiiJCM15466MTQPSRRKGGLGRGLASLIPTGPAEGESGAQGFGPRMGSAAADVVIGGPVADAAAMGAVYREIAPGDIEANPRQPRQVFDEEALSELVHSIREFGLLQPIVVRTVDGAQSGAPYQIVMGERRWRAAQEAGLATIPAIVRETGDDNLLRDALLENIHRVQLNPLEEAAAYQQLLDEFGVTHDELAARIGRSRPLITNMIRLLKLPIPVQRRVAAGVLSAGHARALLSLEAGPEAQEELASRIVAEGLSVRATEEAVTLANRSDASTPTPPRRKPIQMPGLQDVADRLSNAFDTRVTVSLGKRKGKIVVEFGSVDDLQRIIGIMTDAEA
complement(6056436..6057680)       PHAGE_Clostr_phiCDHM11_NC_029001: putative ParA protein; MPSD_56130; phage(gi971764696)     1.25e-12            MycobacteriumpseudoshottsiiJCM15466MWRELLATARNRGGSPTRGHPWAQPTGLSPANGGSTGMRLLRIPVPGAGGSAAAKVDAEPGGAAGVDKGSDAATGTPAGVATGEADAAEAVEATGPDADGVASAAESADNPTVNVSRETSSAFDTPIGAAAERAMRVLHTTYDPLKPPHQRRVFTIANQKGGVGKTTTAVNLAAALAIQGLKTLVIDLDPQGNASTALGITDRQSGTPSSYEVLIGELSLREALRRSPHSDRLFCVPATIDLAGAEIELVSMVARENRLRNALAELDQFDFDYVFVDCPPSLGLLTINALVAAPEVLIPIQCEYYALEGVSQLMRNIEMVKAHLNPDLEVTTVILTMYDGRTKLADQVAEEVRSYFGDKVLRTVIPRSVKVSEAPGYSMTIIDYDPGSRGAMSYLDASRELAQRDRPQTGKARA
