gi||ref|AP018446.1| Helicobacter cinaedi P03D0629 DNA, complete genome. 2221266, gc%: 38.24%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(1222831..1223172)       PHAGE_Lactob_LBR48_NC_027990: putative DNA methylase; PP_01305; phage(gi937456738)     2.09e-13            MRDVWSFPAIASWEKTFGKHPTQKPLALLVRLLLMASNEDSIICDPFSGSSTTGIAANLLGRQFVGIEKESSFINLSIKCKSELDSKFKDIESKINDLRQIASFENLNKCRLI
complement(1223245..1223694)       PHAGE_Entero_phi92_NC_023693: Phi92_gp155; PP_01306; phage(gi726647089)              2.54e-07            MTAKFHTLTPTFTSLDSTFSLYQGDCNALLPQMKESFDVIFADPPYFLSNDGLSIQSGKIVSVNKGEWDRGENIDKIDRFNMEWISNAKIALKPTGSIMISGTYHNIFSLGRALQKLDFKILNIITWQKTNPPPNFSCRYLTHSTEQII
complement(1223684..1224115)       hypothetical; PP_01307                                                               N/A                 VGLDSNARKNRGGAFMESYLRDLFAKANLHFKKEVNIAEFSDLQRNFGDDKKRFDFVIFGKNISYFIECNFYTSGGSKLNETARAYQELAPKFDGFADKNFIWITDGQGWHSSKNKLQEAYKSVEMYNLNNVKDFIKKAQNDR
complement(1224199..1224381)       hypothetical; PP_01308                                                               N/A                 LLGVPKDSLQDKITLLFNEYAKAFDVLPLILAIRNEKELVLDSNGNETPINAYLQSPKGI
1224804..1225727                   PHAGE_Lactoc_P087_NC_012663: putative cysteine synthase; PP_01309; phage(gi229605000)     7.51e-58            MHFHSSLELIGNTPLVELSRIAIPNNNRIFAKLESYNPAGGVKDRVALHILQKAQKEGKLHKDSVVIEATAGNTGLGIAFVCLHFNIKAILVVPDKFSTEKQILMRALGAEVINTPKELGIQGAIDKAKELLDSTPHSFSLHQFENPLNPQAHYETSGKEIYVQMQGVRDLAPVLDYFVCGAGSGGSFSGVAKYLKEQDSRIQAVLCDPIGSVIGGGQEGCANIEGIGNNFIPKTMDTSLIDRVEKISDEEAYQGLKILAREEGILAGISSGACLQACLKLAQEVENKLIVTLFADDLSRYLSKNLV
1225775..1225894                   hypothetical; PP_01310                                                               N/A                 MQVSFIDLFAGVGGFHLALSQANNGGGGKILQNVYLQVR
1226122..1226679                   PHAGE_Oenoco_phiS11_NC_023571: DNA-cytosine methyltransferase; PP_01311; phage(gi589286656)     2.55e-55            VLFLENVKNLKNHNNGKTFQVIKYTLESLNYIVYDSILNTATHANIPQNRERIFIIAFHKDKVKNHADFSFPSPIKLTKAIHNCIDSNKQDDSFYYTPKSKYYAWLEKEVIKQDSIYQLRRIYIRENKSKLCPTLTANMGTGGHNVPIIKDNYGIRKLTPRECFNFQGYPKSFKLPNLANSRLYM
1226747..1227877                   PHAGE_Oenoco_phiS11_NC_023571: putative type II restriction endonuclease; PP_01312; phage(gi589286655)     8.68e-43            MGSLDFYAIDKEQNKNYAKSLSIIATLSRLFSDNTTPYLHYRIMENLFCDCFGFENLSRSDTAYDARLNHLGVGLKTFICNSNASIEKVAEFNKDSAFLKHITDKRDLAEKLAHLRNERIESANKIYDIKDSIYHIIARQDKKLLFFETDYKKININNIQKIKNNDKSLSFYDGSNEYIFNHSKSVLQRKFYIPKNPHILEIEIVKNPFELLLSLQDLQIKQHKEKIAGLDYVILPLYSMKGGVKNVPEKSGLNQWNAGGRTRKYGEVYIPVPREIHKKYPNFFPPRDEIFTLTTPNKEQLQAKLCQDNAKALMSNPNTDLAKWLLQTALHYKEGELVTYERMLELGFDSVIITKHSQSRFSIDIMPLDSYEKFIS
1227987..1229060                   PHAGE_Lactoc_jm2_NC_021860: putative HNH endonuclease; PP_01313; phage(gi526244810)     1.29e-09            MDMIDTFTQVKECVYKGRTYSVRDNGAVFRHAKDKICKNDNYWSFGTLNHKNGYLHLGSARVHRIVALAFLGEPPTQEHIVDHIDTNRQNNRPENLRYLTRLENALLNPLTRQKIIYHCGSIEAFLKNPKILREKVVANESQNFQWMRQVSVEEAQNCLKNLEYLFLQRKSNKKELSYQNNSLGEWIYKPLYFTDTQPSESIQDDFYDTQAISPANAKQRDWRTPSEFPLCPNTNEPNPLETYAKNMQQGKVFASNQYGTSVIMEYALLQGNMPQDRQNIKDSHIQDSKVNENALLVLCKFEPPNAKAYSLAKVTYENDCFIHTALGTYFDENGGRKYFTLAQGLEWKGGEVFDDYC

#### region 2 ####
1769393..1769408                   attL                                                                                 N/A                 TTTGTGGCTCTTGTGG
complement(1770884..1771324)       PHAGE_Lactoc_TP901_1_NC_002747: REP; PP_01947; phage(gi13786544)                     1.17e-05            MIQKNQQLNNFTILSSDILHDKSLSMGARMFYALAQSFSDDWNINIKHFAKLLNVSEASVRKFRNELVNASLLAYSQVRDEKGKLTQESVYTFNTLEVVDFQYVSEKVERLDLVEQEATNTENVESYPFKHLSAYGYSSDLSNIII
complement(1771346..1771468)       hypothetical; PP_01948                                                               N/A                 MRNALSLRCFLGSLRFRARSYLSGSAEARNANLQKLNLKK
complement(1771585..1771902)       PHAGE_Helico_phiHP33_NC_016568: DNA repair protein; PP_01949; phage(gi371671349)     2.87e-21            VAQNIKTLYKQGVRVFLIDSQMRLVSPNGRNIEEEESLKFSTLARLCHSLGILVFLIVQTSKGDRDNPMGSKKGGHESSITIRIEHDKPKNESVREFSEDSRIVI
complement(1772035..1772415)       PHAGE_Helico_phiHP33_NC_016568: DNA repair protein; PP_01950; phage(gi371671349)     1.45e-05            VSKNAFVGKLSKKEQEQDYFLDILSHIPNANVVRLTQSFYESFLKQKEAGLKLLEASENNALLDMNALIPNVNFCSHKNMQEWQDYYDTLPKMPKYKTGINFLDSVFDGGDRICPACFNQWRPRNR
complement(1772419..1772565)       PHAGE_Helico_KHP30_NC_019928: putative DNA helicase, putative DNA repair protein; PP_01951; phage(gi431810548)     3.68e-05            MIELEKEIMASFLAYPQQIDEFLAQIPKEYFTQKGQRTLEILIELLES
complement(1772568..1772720)       hypothetical; PP_01952                                                               N/A                 MSFWYVCKECGYINEVDCIEINIQIKLNSQKAVSCICSECDNRQDIIIEV
complement(1772717..1772863)       PHAGE_Helico_phiHP33_NC_016568: integrase/recombinase; PP_01953; phage(gi371671343)     6.42e-06            LWVSSMLGHKSLQTTFQHYVKYIPQNKKRASFLDNFTLKTHSTQKDSL
complement(1772874..1773035)       hypothetical; PP_01954                                                               N/A                 MEVKHTNLYKRNGIIYIDATLTEIGRVRFSTKLKDTKENMAKTLLSAKDLVSK
1773081..1773194                   hypothetical; PP_01955                                                               N/A                 VIFHCKICFLKKCVRFVNEMDFVIRSSDMKGDFQGVE
complement(1773356..1773862)       PHAGE_Temper_phiNIH1.1_NC_003157: putative methionine sulfoxide reductase; PP_01956; phage(gi16271776)     1.04e-46            MAVIYLAGGCFWGMQGYFDRLKGVLDSSVGYANSKIANPSYDLVCSGASGAVETLKLEYDESALSLREIIERFLSIIDPCALNYQGNDRGTQYRNGVYYEDSQSESVIRECLKKWEQGQNRKAVTEILPLANFYEAESYHQKYLEKNPNGYCHIDIESALHSFQGFDK
1787087..1787102                   attR                                                                                 N/A                 TTTGTGGCTCTTGTGG

#### region 3 ####
1839707..1841503                   PHAGE_Entero_JenK1_NC_029021: glutamine amidotransferases class-II (GATase) / queuosine biosynthesis QueC ATPase; PP_02026; phage(gi971766407)     3.82e-09            MCGIVGYIGRDEKKQILLNGLKELEYRGYDSAGIAVLSLDELQTFKTVGKLENLESKCRDFSFQGFGVSIGHTRWATHGKPTEANAHPHIADFSNVVHNGIIENYQELKTMLESKGHSFISQTDTEVIVHLFEEKLKNTQDCYTAFTSTIAELKGAFAILLITKLAPDSIFYAKNGSPLIIGKSASQEDEIYFASSDAPLIGFVDSVVYLNDGDMGVMKLGSFSQLKNPKKLDSSKGYAQKEGFRYFMEKEIYEQHKVLLETMMGRVSEGDITLSEIESGFFDDIQSISICACGTSYHAGLSAKYLFERLAKIKTNVLIASEFRYAKPVMDKNELFIVISQSGETADTLEALKLAKKNGLKSLAICNVDNSSIVRESSVSLLTRAGIEKGVASTKAFATQMMLLWILSVYVGKLRGHIKQDELKTHIAQMVESAKATKVDSAMHEHIKRLSKRYLHGHGFFFIGRDIFYPLALEGALKLKEISYLHAEGYPSGEMKHGPIALADAELFTLALMPKHLLFDKIKSNVEELSARDATICAVSTEQIQGVDDMLLVQPCQSYMEEFFSMMVVLQIFALEVAIRLGNDVDMPRNLAKSVTVE
complement(1841507..1841980)       hypothetical; PP_02027                                                               N/A                 MSALMLLGLGLGCIVAEIFFGSFFLLFIGLGLCITAGIEAFVGFGNIIGGSVESVYAWQAVSICAFAFLTLILLRKPIKSWFKGLKVYEDSLQNGGGVGEIQQGMVYFKGTLWAYEKALTLDSNGLESGTLESNTPLKEGDRVQVLEIRDNKAIIKA
complement(1842085..1842987)       PROPHAGE_Escher_Sakai: FtsH protease regulator HflC; PP_02028; phage(gi15834405)     9.96e-09            MLIFTGVVLVLCVAVLAFGIKIISQTDIAIVERLGRFHRVLDGGFHFIIPIIDRLSAVVSAREQMIDIGRQQVITKDNVNINIDGIVFLKVFDAKSAVYSVNDYKQAIANLATTTLRGEIGRINLDDSLSSRDRLNAALQVALGDAANNWGVKIMRVEISEISVPKDIENAMNLQMKAEREKRAIELKAQAEKEALIRNAEALKQEKVLQAEAIERMADAKKYEQIALAQGQSDAMELIANQMSKNAQAAEFLLTKERIVAFTELSKNPSKDKVIIPYETSEFIGGLSVIGEFLGKGKKA
complement(1843191..1843427)       hypothetical; PP_02029                                                               N/A                 VPLCLAASRAEFQIIDKWENMVYIDAFSHAKITQNNNANFSDFNDCVVHCENNINIKYDTEKQELMLDYNKRILDSKV
complement(1843402..1844394)       hypothetical; PP_02030                                                               N/A                 MDKVLQEILQIDSSRECIKFLVKRVQSDNYRGLQISQHNRYTQKEILVILQEIYELCGDTLLQIRTSDLSKRPYNIEGEEKYAELTTKISSKLGRCTQDSLRKNIFVDLHRMGLIDRFNAKKKQLNPFDNGTKKYIALTDFGIEFLQSTDIFTHNLLFTRALENLMQGFGEEILHIILELESNYLTLYEVLFFVTFLYQKLDSKTYNRSDIISLIRDYRTLSKFQKQALLEKVKDYCEPKNFSGDKTQKRDFHNFLNETQQILSLLTQMAYFEYNKNDSKLYIRTGTYGIYEDNTKLKRSIKEKDLYFEKHNITKEKGTSSYCAFVFGCK
complement(1844394..1844552)       PHAGE_Prochl_P_RSM4_NC_015283: DNA adenine methylase; PP_02031; phage(gi326782796)     3.17e-10            MIKASSKKGDLVLDLFSGSGMTSLVARDLERNFIGCEASIEYVDSSLNIKEC
complement(1844702..1845157)       PHAGE_Vibrio_VP58.5_NC_027981: gp53 protein; PP_02032; phage(gi937456124)            2.81e-10            MLNKIYIQDCFSFLESLTDSSIDLAIIDPPYNLKIASWDSFKSEKEFLAFSYKWIDLLLPKMKKNGSFYIFNTPYHCALFLHYLQEKAVFQNFITWYKKDGLSYTKKRFVNNQESILFYTMDSKSYCFNPESIRVPYESTSRIEHAKKMES
complement(1845147..1845587)       PHAGE_Sulfol_YNP1_NC_029027: putative type II restriction modification system, methylation subunit; PP_02033; phage(gi971767019)     1.22e-22            MFGSYPYPRNFYAQNTSEFITIYVKDGKPQNTPQELKEQSKLSQKEWVQFTKQIWDIPIPNKADSAFGKHATIMPEAIPYRLIKLYSFIGDIVLDPFAGSGTTLKVAKELGRNFIGYEIYPHYKSVIEEKLGESGLFAMQGQGNAQ
complement(1845615..1845779)       hypothetical; PP_02034                                                               N/A                 VLKPNGKLCINVPLMPMFKRDLNTHYNRHIFDLQSDIQHSILESTPLFLLDLYI
complement(1845845..1846009)       PHAGE_Sulfol_STSV1_NC_006268: Cytosine methylase, similar to N4-cytosine methylase; PP_02035; phage(gi51980192)     3.85e-05            MNKIFYKSSQNMCEVSECSVDLIITSPPYFNIKDYSKDGYQNVKHSAVAGGRGI
complement(1846035..1846172)       hypothetical; PP_02036                                                               N/A                 LLQFVESFIKALQKECIKSVVLWQEKEREACKNVVKCDYKTNKAK
complement(1846180..1847337)       PHAGE_Salmon_7_11_NC_015938: hypothetical protein; PP_02037; phage(gi345461254)      5.00e-05            MRQVNMRHKRSNTDLFFDSFKHLKHNLSNLIGVELPTLCHLGAERYLSLISTNYKSKYPDMRKLGLIDYNKPSDYSFSLSLEAEKIKEAFGNFWGIYAYDENIIKSERKNIDSLPPEDLISPNPHINFYKYKLSILQLILSYYDTADSIRPYLVLLNYMKNYGIRNLNRDLLKNILAHTKEDILLMRYNQNAFVSLDDETKIELNRPISYIYNFLITALVVDYSYNIIVDFNLVDRLNATMNNNVLYYFTQNRSRPAKEQRLFRESVLKAYDYKCAITGKSLLIDDRCLLEAAHIIPYRDGGSFVVNNGIALSYEMHKMFDNGLFSFTYKNDDEIVIITSSSNRITDKQGILADLDNKPIFLPEQLDVRPDPLALQYNKDKFYLT
complement(1847337..1849409)       PHAGE_Synech_S_CAM3_NC_031906: dNMP kinase; PP_02038; phage(gi100169)                5.16e-51            MAKKLLNSQCYQLHDFTQQSLQEILNGDSLYILKNHIADNFIDIIITSPPYNVAHKYENYNDDLDFESYLNAMRDIFKECYRVLKDDGRICVNVPFAVKNRDSKEVRFLSVYMTQILNEIGFKEFELITWHKGKDIKHFQGNNTAWGSWKSPSCPSFRPLGEAVLVFYKNERIHKGSSANIDTSSEEFKEWTKNIWYFDENGKQGFENVLCASNNAKKDLHPAPYPEELIERLLKIYSYQNDIVLDPFNGTGTTTYVANQLHRQFIGIELSSKYCKIAIERLQKTTNSQTTPIIKSYPTILTNLVNSDDTRDSLNEVFPYKEAFSPYLIEHLQNRFVCSIASVYDPFCGVGSSFLNTQTQICYGFDTSAFALNVAKVKLEKLDSKHLKKAEKNIRNFMPSNREYPFPQWESFGKYADKKRFNLIMDFIESFKDVDSKIYHFVSFLVLCNLEKMLHFKKDGNGIKYRESKIRDIESYLKALTLRAFELKKEFDRNNSKLIILENRSSINNKPKDKVDCILTSPPYANLFDYFEIYKMELWSSKIVKSYEEWKKLKKTALRNNKNAALKQQDKIENTLLNHTLETLKNKGIESSTLTMLNNYFFDMQKVLKNCFEVLKDNGFCFIVVGNSCYKGVPIQTDEILAQEAQKLGFECKEIIIARKLKTSSQQMKVIDSKAKFYLRESIIVLQKEK
