gi|00000000|ref|AP018677.1|  Vibrio cholerae V060002 DNA, complete genome. 4057041, gc%: 47.50%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1185143..1185155                   attL                                                                                 N/A                 GGTTTTCTTGATG
1188630..1190387                   PHAGE_Pseudo_B3_NC_006548: putative transposase A subunit; V060002_01116; phage(gi56692580)     7.16e-110           VibriocholeraeMNALELERAQYLKRLMSDLDRSGRGQKGVIVQAAMDHLCISKSKLYQELTDLGWTSGRKTRADNGDLALTKEETELLSNMIRQSKRESGKALMTVRDAVDIALANGELTRHVSESTVLRAFKRFRVHPDQLDMMETTMSQRSLFPNHAWQFDVSICVLYYLRGGKGLQVMSKDEFYKNKPKNLDRIVNERVLRYLATDHYSGAFFLRYYLAPGENTETITQFLLEAFCERDTGELMYGVPQILIWDAGSANIAHQTRHMLDMLEVKHIAHTPGRPWAKGQVESTHNLVERRFEGRLAFMTVQSIEELNRHAVQWSIGFQSLKEHSRHKNSRFGLWQTIRAEQLRLIKDVNLVKSMMQQTKPEVRKVRPNELSISFAPKGYASMDYSLAHIPHLIAGDEVKVFANPYKAPAIRVISVDDSGQEHTHEATPIERDAAGFNLLAPIIGAEHKSVRETDADHNRKRLDIQAWGTDNPRDIKKLRKGKVAAFDGRINPMADIEQQVVPSFMPRRGTVMSMEGQPLTEQKMSFIGALNRLQRRLNPTKEELAVMRKVLKQQYPDGMTDNELQVFTEQWEQKGNEHAQSATR
1190359..1191468                   PHAGE_Pseudo_B3_NC_006548: putative transposase B subunit; V060002_01117; phage(gi56692579)     5.01e-53            VibriocholeraeMNTLRARLDKAGTSIQALADYLAMNYSTVQRAVKMNEPPKRRAEEFKEKVEAFFASHGLEGVSGWSKAATNDQPDPQTETNRELELENPMLTQEAMKHFKLFRNPFINDIRAVRDIYMNEDSRYVLAAMKDVARNQGILAVVGDSGAGKSVLRRLLLDELHNDGDISVIQPKIIDKTRATAAGICDAIISDISSEAPKRSMEAKARQVERLLMTAFKGGQRHVLIIEEAHDLTIPVMKYLKRFWELEDGFSKLLGILLVGQTELFHRLDERRHYELREFIRRCMVIEVPPLDNDIEAYLKHKFERAGCEYERIMDDSAVPALKLRLQTRRNQSGSLVYPQVINNLVTKAMNLCASLGEDKVNEDIIKEL
1191471..1191932                   hypothetical protein; V060002_01118                                                  N/A                 VibriocholeraeMNNQNDNGLLPFNVGELVSAVHFDCNDFDTADYIPSVQLRQDLHDKLGCAVSNLNSILSIYNQWKQGQLSCNWSAVSELTLRTQVVSGQFKTISQMCRNDRNGMVYNPLLNDGIPDLSKGLTPLECSELKALLDGLHPIELLQLLRHQKGSLV
1192074..1192340                   PHAGE_Vibrio_12B12_NC_021070: F protein; V060002_01119; phage(gi481019167)           9.24e-11            VibriocholeraeMNEHYEQKLKQALRQKSVMPYLTIILGPTKEQCPVHTKNKGLVLPVDDRYWTEFPMRETSACRCSIRQVSKYEYQKLKAEGVLEVPVD
1192742..1193116                   PHAGE_Vibrio_12B12_NC_021070: hypothetical protein; V060002_01120; phage(gi481019179)     2.07e-07            VibriocholeraeMLAIERAIPLVVDALSKDSGLFSFDDLESGDALYPELLSDVHDIFLGVIEDAGIEDNGLALHLVFKLMEYGNGVQFYLPKPDSIVKTIIKKMMKNDFNGSNYVELAKRYQCSTNHVRRVINGTH
1193103..1193423                   hypothetical protein; V060002_01121                                                  N/A                 VibriocholeraeMAPTDNQRSLVISKLTPSAQVLYRALDEAIKQSAGKPDALKIVIELSEKLGGRTFYFSLGTVARRTQRNIDLFADHESGMSVRELSKKYKLSFVSVFNVIRKFKTS
1193442..1194020                   hypothetical protein; V060002_01122                                                  N/A                 VibriocholeraeMSLSTLQAELASAKTEYEAKELEIRNLFSEKNTQERRLQTLVAQVAAKRKELSNALSQSSAETLTSELQSLESQYQACQTLINNISNYLTVKAGLDKKNASELVERAQKNLLNFIYNSIKSELKVLTDEQVELMKDFVVIEKLIRSELSDSVRQSYFLGCVFDELYGQLKGSDFTSHKEKMLKKYDAESSIG
1194081..1194452                   hypothetical protein; V060002_01123                                                  N/A                 VibriocholeraeMEHVYQLVDGIVFKGKLQKQVTLHPIDSVSYDLVEQLVEEQLQHIQNQADVVLVNDSHLQGLKGYMLLNESAASSISKIGDENVDLMFFDLCQLKISAQDWNVILTANLAIAEYYANQAAMLA
1194501..1194860                   PHAGE_Vibrio_12B12_NC_021070: extracellular solute-binding protein family 7 protein; V060002_01124; phage(gi481019155)     1.46e-38            VibriocholeraeMAVMTFNLEDGFKVGDAQCHEVGLKELTPKDVFDAQLASEKIGILNGRPHAYTSDVQMGMELLCRQVEFIGNVQGPFSVKEILKLSSRDFATLQQKARELDDIMFSDDALEGLEARGRD
1194995..1196035                   PHAGE_Rhizob_RHEph06_NC_027296: putative tail protein; V060002_01125; phage(gi848469511)     4.34e-28            VibriocholeraeMANNLKTDIVLNLQGDLAQKARSYSKEMTTLATRSKAAFSMISSSAIAASRGIDTFGNRLLFITGAAAVGFERTFVKTAAEFERYQTMLNKLQGSPEAGAKAMAWIEEFTQNTPYAIDEVTQSFVRLKAFGIDPMDGTMQSIADQAAMIGGTAETVEGIATALGQAWTKGKLQSEEALQLLERGVPVWDYLIKSSKELGMNNGRGFTKEELDDMSSKGKLGRDAIRALIKQMGKESAGAAKEQMNTWNGMISNMGDHWKLFQKDVMGSGAFTVLKDQLGEFLGMLDEMKKTGEYDEFVDKVGRDLVEAFKSAAAAAREIKEVGEELWPVIREIGSMACSGIVNLVT
1196078..1196386                   PROPHAGE_Xantho_33913: ISxac3 transposase; V060002_01126; phage(gi21231087)          2.94e-08            VibriocholeraeMTKRTRRLFSAEFKLEAAQLVLDQNYSVTEAAQAMNVGKSTMDKWVRQLREERQGKTPKASPMTPEQIEIRELKKKLARLEEHNEILKKATALLMSDSLNNS
1196629..1197255                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; V060002_01127; phage(gi41057343)     7.78e-117           VibriocholeraeMRTLGLVSCQEPKHRYRKASQEHIDVPNHLSRQFAVTAPNEVWAGDVTYIWTGNRWMYLAVVIDLFARKVIGWSMSLSPDSRLTGKALSMAYESRGKPKGVMFHSDQGSHYTSRKYRQLLWRFQIKQSLSRRGNCWDNAPIERFFRSLKTEWVPTVGYRSFAEAQQEITRYIIGYYCQLRPHQYNGGLTPNESERLYWENSKTVANFS
complement(1197248..1198312)       PROPHAGE_Xantho_306: integrase; V060002_01128; phage(gi21242250)                     2.07e-06            VibriocholeraeMRSDYLKDRLLEQAGSFIDFNHMRETLKEIAKAELLRRPKVDWFYRGNIIVAQEALQEAQTVEQVRFIQSYSDIMKKGLQSDTEGLLSIIDSVDSEQSKHSEPQDHKEHKEHKESLTIDELIDNYIADKISSGEWMESTKEKKGAKLQHLKTIFEACSLKDKPIDKLTRNDLLEVRTALINRGLKTLTVNGYMQDIRAIFNNAEALGLIGKSPAVKLNIKDRDIKEPKALTESEVIALIDYFKHGYFTEARRSKKTLEGMKYLKWVPQIAAVTGARLNEILQLRKGDIRQSANGLCWYIDINDRGDNVVKNKSSNRIVPLVDGAYGFDLELFLSEIVNTCNEDSDNIFRLVVVN
1198609..1198621                   attR                                                                                 N/A                 GGTTTTCTTGATG

#### region 2 ####
complement(1425157..1425531)       PHAGE_Vibrio_CTX_NC_015209: CtxB; V060002_01333; phage(gi332672307)                  1.18e-89            VibriocholeraeMIKLKFGVFFTVLLSSAYAHGTPQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN
complement(1425528..1426304)       PHAGE_Vibrio_CTX_NC_015209: CtxA; V060002_01334; phage(gi332672306)                  0.0                 VibriocholeraeMVKIIFVFFIFLSSFSYANDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL
complement(1426403..1427602)       PHAGE_Vibrio_CTX_NC_015209: Zot; V060002_01335; phage(gi332672305)                   0.0                 VibriocholeraeMSIFIHHGAPGSYKTSGALWLRLLPAIKSGRHIITNVRGLNLERMAKYLKMDVSDISIEFIDTDHPDGRLTMARFWHWARKDAFLFIDECGRIWPPRLTVTNLKALDTPPDLVAEDRPESFEVAFDMHRHHGWDICLTTPNIAKVHNMIREAAEIGYRHFNRATVGLGAKFTLTTHDAANSGQMDSHALTRQVKKIPSPIFKMYASTTTGKARDTMAGTALWKDRKILFLFGMVFLMFSYSFYGLHDNPIFTGGNDATIESEQSEPQSKATVGNAVGSKAVAPASFGFCIGRLCVQDGFVTVGDERYRLVDNLDIPYRGLWATGHHIYKDTLTVFFETESGSVPTELFASSYRYKVLPLPDFNHFVVFDTFAAQALWVEVKRGLPIKTENDKKGLNSIF
complement(1427599..1427883)       PHAGE_Vibrio_CTX_NC_015209: Ace; V060002_01336; phage(gi332672304)                   2.09e-61            VibriocholeraeMMDTLYDWLIDGFTWLVIKLGIMWIESKIFVIQFFWEMSQKVIDMFTIYPLIQQAIDMLPPQYSGFLFFLGLDQALAIVLQALMTRFALRALNL
complement(1427889..1429076)       PHAGE_Vibrio_CTX_NC_015209: hypothetical protein; V060002_01337; phage(gi332672303)     0.0                 VibriocholeraeMRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYKPRFSQGVSPNWPMCDLSGASAERCIYPYCPEGEECVPLPPSPPSDSPVDGLSSSFKSAFNQVYKNQSEMASTLNHVSGQVSHSQDMVQLNTKFHADRVLESVTAVNNRLGGQMEYLEEIRIDVWDTQREVRKAKDELYSRVAAVSYDVLYSELNVLRAIDELKDSLGGTVVPPNPDQPNPTPPDSSSPNYTGALNTISKKLNTLETISQQLDTMNTALSGRCSNPERCQFPIREAETELETAQQNLKQMINEKITQSALHQFKGSAAVPSFCSYVEAFGYNLCFDFSLFSENLHIIRMIVLAMAYILAAMLILFR
complement(1429183..1429431)       PHAGE_Vibrio_CTX_NC_015209: Cep; V060002_01338; phage(gi332672302)                   2.47e-49            VibriocholeraeMFSSLKNKLNTFKSTLSLGVFLLFSAFANQALAAADAGLVTEVTKTLGTSKDTVIALGPLIMGVVGAIVLIVTVIGLIRKAK
complement(1429424..1429567)       hypothetical protein; V060002_01339                                                  N/A                 VibriocholeraeMDLTHYVWNEALYFAVVKAVLVLFFTSFGIGAVASLILSTVKEKLHV
complement(1429567..1429947)       PHAGE_Vibrio_CTX_NC_015209: RstB; V060002_01340; phage(gi332672301)                  9.95e-90            VibriocholeraeMKLWVINMKSRFVVFGASHSEGVSSKTGAPYLIPVLFVGKPIRQWKNDKGQCLTFGLQHQEVKFVSSDAMTRKLEQTAFPVLVTFDNEPDPEDPSRNLVIDYQVVCSLFDNVPGGKPLDKPQPIKS
complement(1429928..1431007)       PHAGE_Vibrio_CTX_NC_015209: RstA; V060002_01341; phage(gi332672300)                  0.0                 VibriocholeraeMKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAMMERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLDLLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKAAQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISKHFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD
1431139..1431474                   PHAGE_Vibrio_CTX_NC_015209: RstR; V060002_01342; phage(gi332672299)                  7.93e-09            VibriocholeraeMFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAELVSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
complement(1432205..1432579)       PHAGE_Vibrio_CTX_NC_015209: CtxB; V060002_01343; phage(gi332672307)                  1.18e-89            VibriocholeraeMIKLKFGVFFTVLLSSAYAHGTPQNITDLCAEYHNTQIHTLNDKIFSYTESLAGKREMAIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVWNNKTPHAIAAISMAN
complement(1432576..1433352)       PHAGE_Vibrio_CTX_NC_015209: CtxA; V060002_01344; phage(gi332672306)                  0.0                 VibriocholeraeMVKIIFVFFIFLSSFSYANDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQIFSGYQSDIDTHNRIKDEL
complement(1433451..1434650)       PHAGE_Vibrio_CTX_NC_015209: Zot; V060002_01345; phage(gi332672305)                   0.0                 VibriocholeraeMSIFIHHGAPGSYKTSGALWLRLLPAIKSGRHIITNVRGLNLERMAKYLKMDVSDISIEFIDTDHPDGRLTMARFWHWARKDAFLFIDECGRIWPPRLTVTNLKALDTPPDLVAEDRPESFEVAFDMHRHHGWDICLTTPNIAKVHNMIREAAEIGYRHFNRATVGLGAKFTLTTHDAANSGQMDSHALTRQVKKIPSPIFKMYASTTTGKARDTMAGTALWKDRKILFLFGMVFLMFSYSFYGLHDNPIFTGGNDATIESEQSEPQSKATVGNAVGSKAVAPASFGFCIGRLCVQDGFVTVGDERYRLVDNLDIPYRGLWATGHHIYKDTLTVFFETESGSVPTELFASSYRYKVLPLPDFNHFVVFDTFAAQALWVEVKRGLPIKTENDKKGLNSIF
complement(1434647..1434931)       PHAGE_Vibrio_CTX_NC_015209: Ace; V060002_01346; phage(gi332672304)                   2.09e-61            VibriocholeraeMMDTLYDWLIDGFTWLVIKLGIMWIESKIFVIQFFWEMSQKVIDMFTIYPLIQQAIDMLPPQYSGFLFFLGLDQALAIVLQALMTRFALRALNL
complement(1434937..1436124)       PHAGE_Vibrio_CTX_NC_015209: hypothetical protein; V060002_01347; phage(gi332672303)     0.0                 VibriocholeraeMRYFLLFLTLLFLSPSVTASAINCDPNTTTSHQLLFGFGSPIVQSVLFDGCMLDIEKDDYGFVWSCLSNENGDYCKGLYKPRFSQGVSPNWPMCDLSGASAERCIYPYCPEGEECVPLPPSPPSDSPVDGLSSSFKSAFNQVYKNQSEMASTLNHVSGQVSHSQDMVQLNTKFHADRVLESVTAVNNRLGGQMEYLEEIRIDVWDTQREVRKAKDELYSRVAAVSYDVLYSELNVLRAIDELKDSLGGTVVPPNPDQPNPTPPDSSSPNYTGALNTISKKLNTLETISQQLDTMNTALSGRCSNPERCQFPIREAETELETAQQNLKQMINEKITQSALHQFKGSAAVPSFCSYVEAFGYNLCFDFSLFSENLHIIRMIVLAMAYILAAMLILFR
complement(1436231..1436479)       PHAGE_Vibrio_CTX_NC_015209: Cep; V060002_01348; phage(gi332672302)                   2.47e-49            VibriocholeraeMFSSLKNKLNTFKSTLSLGVFLLFSAFANQALAAADAGLVTEVTKTLGTSKDTVIALGPLIMGVVGAIVLIVTVIGLIRKAK
complement(1436472..1436615)       hypothetical protein; V060002_01349                                                  N/A                 VibriocholeraeMDLTHYVWNEALYFAVVKAVLVLFFTSFGIGAVASLILSTVKEKLHV
complement(1436615..1436995)       PHAGE_Vibrio_CTX_NC_015209: RstB; V060002_01350; phage(gi332672301)                  9.95e-90            VibriocholeraeMKLWVINMKSRFVVFGASHSEGVSSKTGAPYLIPVLFVGKPIRQWKNDKGQCLTFGLQHQEVKFVSSDAMTRKLEQTAFPVLVTFDNEPDPEDPSRNLVIDYQVVCSLFDNVPGGKPLDKPQPIKS
complement(1436976..1438055)       PHAGE_Vibrio_CTX_NC_015209: RstA; V060002_01351; phage(gi332672300)                  0.0                 VibriocholeraeMKKQIFTLDELQLDTNASPFVFVDYLAWSVPYASFRHAHKSDLSSLIWAPLPKPDYRMARTPEQKEKLIELYKQKWNVAMMERLEVFCLHVLGLRMSPWRDKGLYGYENSCHLMSKYSNKHVGFVALGGNRNTCYFQIEGVGCRTVLEHTSLFRLHWWLDLLGCSRLSRIDLAVDDFHGLFGREYAKKAYSDDAFRTARAGRAPNGGERLVSEPNGKIINESFEVGSRESRIYWRIYNKAAQLGLDMHWFRNEVELKDMPIDVLLNIEGYFAGLCAYSASIINSLPVKVVTKKRQVALDIHSRIKWARRQVGKTLFDISKHFGGDLERVFGALISKEIHDDSLNLPDSYMKLIDEIMGD
1438187..1438522                   PHAGE_Vibrio_CTX_NC_015209: RstR; V060002_01352; phage(gi332672299)                  7.93e-09            VibriocholeraeMFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAELVSDSETNIDEKLKSKIRMIESLDEPEKESLFILMEALLMRSKSREIQKEFR
