gi|00000000|ref|AP022568.1|  Mycobacterium simiae JCM 12377 DNA, complete genome. 5788994, gc%: 66.22%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1605563..1607056)       PHAGE_Pelagi_HTVC008M_NC_020484: adenylate/guanylyl cyclase; MSIM_14810; phage(gi460042455)     2.15e-26            MycobacteriumsimiaeMNHIWQWVWDRYATKYSWALCAIMFAVVLPAYLMLSFIVVAHEKSDRYVEAAAVTVAAGPLLAYMYFLPGLGRLHLVEQWAAGHDVDRADALDATYVTARGAVARGLVSNVFGLALVFVIVAALAGAGGWRLAQYGIVGACLAAAAQLIGLHSFVEGALRPARVAIAGDTGIGDSLPRSRPTFAAWSKISMLAVAFGFSVGGALLGSAFSRVGENPMLAVLLGCVALGFAVPISVGAGFAPSLQPIRDLAEGTKRVAAGDYSRRLPVVQDDDLGVLAASFNRMQAGLAERQRLQAAFGTYVDPGLAARLLEQGDDVFSGERREVTVMFIDIRDFTPFAEAHSAEDTVTRLNTLFEIVVPAVVGAGGHVNKFLGDGALAVFGAPNDLPAHADAAVHAAGLIHRLVAERFGGELRIGIGINTGVVIAGTIGGAAKLEFTLIGDAVNVAARVEQLTKITGDSILLTEHTVDALTSRPPLIDRGSHLLKGKSAAVNVFGLG
complement(1607243..1607986)       hypothetical protein; MSIM_14820                                                     N/A                 MycobacteriumsimiaeMSYPQQWPPQYPRQYPQPWSPQYPQPWSPPGPYPPRRKTNRALIVVLVIAATVVLIPAAIVGFFVVRDLAHDGLDGRGGTSKATSLSSFDVVCDRGSISNAAAYGKPYKIAAFARNERPNPMSRVTSDHWTELMLDSRADYRVNPNDYTSVNVVACLTHKSGTEVKSLSCDFKTDDGDRVTVDYFAVQYDIELREARTGKHLEQLGTVAGPAASCPFLIWVNKHDRKVYAEPDHAAVDAKLAEFADR
complement(1608105..1609724)       PHAGE_Cellul_phi14:2_NC_021806: chaperonin GroEL; MSIM_14830; phage(gi526178751)     1.73e-97            MycobacteriumsimiaeMSKLIEYDETARRAMEVGVNKLADAVRVTLGPRGRHVVLAKAFGGPVITNDGVTVAREIDLEDPFENLGAQLVKSVATKTNDVAGDGTTTATVLAQALVKSGLRMVAAGANPIALGAGISKAADAVSEALLAAATPVAGRDGIAQIATVSSRDEQIGALVGEGMDKVGADGVVSVEESSTLNTELEFTEGVGFDKGFLSAYFVTDFDSQEAVLDDPLILLHQEKISSLPDLLPMLEKIAETGKPLLIVAEDVEGEALATLVVNSIRKTLKAVAVKSPFFGDRRKAFLEDLAIVTGGQVVNPDAGLVLREVGTDVLGSARRVVVSKDDTIIVDGGGSKDAVEKRVKQLRAEIEASDSDWDREKLQERVAKLAGGVAVIKVGAATETALKERKESVEDAVAAAKAAVEEGIVAGGGSALIQAGKSLTDLRASLSGDEAAGVDVFAEALTAPLYWIATNAGLDGAVAVSKVRELDAGHGLNAATLQYGDLIGAGVIDPVKVTRSAVLNAASVARMVLTTETAVVDKPAKEDDDHGHGHHHHH
complement(1609813..1610115)       PHAGE_Serrat_BF_NC_041917: L-shaped tail fiber protein; MSIM_14840; phage(gi100266)     6.68e-06            MycobacteriumsimiaeMAKVNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGDKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK
complement(1610354..1611394)       PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; MSIM_14850; phage(gi16130960)     1.05e-70            MycobacteriumsimiaeMTATTILAIETSCDETGVGIARLHCDGTITLLADEVASSVDEHVRFGGVVPEIASRAHLEAIGPAMRRALAAAGVHKPDVVAATIGPGLAGALLVGVAAAKAYSAAWGVPFYAVNHLGGHLAADVYEHGPLPECVALLVSGGHTHLLHVRSLGAPIVELGSTVDDAAGEAYDKVARLLGLGYPGGKVLDELARTRGPGAAEIPAFPRGMTGPADDQYAFSFSGLKTAVARYVESHPDADTADIAAGFQEAVADVLTRKAVRAATELGVGTLLIAGGVAANSRLRELATQRCDQAKLKLRIPSPRLCTDNGAMIASFAAHLVAAGAPPSPLDVPSDPGLPVVKAQVS
complement(1611396..1611863)       PHAGE_Pseudo_vB_PaeS_PAO1_Ab18_NC_026594: hypothetical protein; MSIM_14860; phage(gi764160510)     8.32e-05            MycobacteriumsimiaeMTAGGQAVTFGALTRADAQRCAQLEALLFDGDDPWPAAAFNRELASPHHHYVAARIADTLVGYAGIAKLGRKPPFEYEVHTIGVDPQYQGRGIGRRLLEDLLKFADGGVVYLEVRTDNEAAIALYRSVGFEQIGLRKRYYRVSGADAYTMRREAQ
complement(1611860..1612489)       PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; MSIM_14870; phage(gi16129761)     1.08e-10            MycobacteriumsimiaeMNLLLALDTSTPAVTAGVVRHDGAACTVLAQRVTVDARAHAERLTPNALGALADAGLRMADLDAVVVGCGPGPFTGLRAGMATAAAYGHALDIPVHGVCSLDAIGVLTPGETLVVTDARRREIYWARYRDGVRVAGPAVNAPADVDPGAARAVAGSPEHAALFGLPVCEPVHPTPAGLVAAAPDWSAEPAPLVALYLRRPDAKPLAARQ
complement(1612486..1612950)       tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; MSIM_14880                N/A                 MycobacteriumsimiaeMSSGSGTATCERVEDTIALGAQLGRELRAGDVVVLSGPLGAGKTVLAKGIAEAMDVDGPVTSPTYVLARVHPPRRANAPAMIHVDVYRLLDHRGADLLGELDSLDLDTDLEDAVVVVEWGEGLAERLAERHLDIRLERLSHSDVRIATWRWAHT
complement(1612964..1614079)       PHAGE_Mycoba_Pukovnik_NC_011023: gp62; MSIM_14890; phage(gi192824238)                3.60e-06            MycobacteriumsimiaeMSDEEIRRRHGGRTWLAGGAGLTAVATIVGASVRRSMTQRVSLVEDPYAGEDFDRMHSDRSYVVTTRDGVPLAVREVGPVDAPLTMVFVHGFCLRMGAFYFQRKRLAEKWGPRVRMIFYDQRGHGRSGEASPETYTLTQLGQDLQSVLAEVAPRGVIILVGHSMGGMTVLSHARQYPEHYGTRIVGAALISTAAEGVTRSPLGEILKNPAVEAFRFTARSAPKLMHRGRNVSRSLIGPVLRAASYSDLQVSRSLDAFSQRMMNATPIPTLVGFMRALEEHDETAGLWTLLRIPTLIACGDHDLITPDEYSRKMAASLPQSELVIVHGASHLALLDKPEAINEGLVRLVNRASPGRMTLWYRRMQHRWRRRG

#### region 2 ####
1657080..1658075                   PHAGE_Entero_phi92_NC_023693: Phi92_gp067; MSIM_15310; phage(gi726647000)            7.67e-90            MycobacteriumsimiaeMRLLVTGGAGFIGANFVHSTVRERPDVSVTVLDALTYAGRRESLADVDTAITLVEGDITNAELVSRLVAESDAVVHFAAESHVDNALDDPEPFLHTNVVGTYTILEAVRHHRVRLHHISTDEVYGDLELDDPQRFTESTPYNPSSPYSATKAAADMLVRAWVRSYGVRATLSNCSNNYGPYQHIEKFIPRQITNVLTGRRCKLYGTGANVRDWIHVDDHNSAVWQILDKGQIGQTYLISAEGERDNLTVLRTLLALMGRDPDDFDHVTDRVGHDLRYAIDPSLLYDELHWAPKHTDFEEGLSETIDWYRANESWWRPLKDAAEERYQQRGQ
1658077..1658688                   PHAGE_Escher_phAPEC8_NC_020079: putative dTDP-4-dehydrorhamnose 3,5-epimerase; MSIM_15320; phage(gi448260371)     1.63e-38            MycobacteriumsimiaeMQVRELKVPGAWEITPKIHGDARGMFFEWLTDRGFRDFAGHPLNVQQANCSVSAAGVLRGLHFAQLPPSQAKYVTCVRGAVFDVVVDIRVGSPTFGQWDSVLLDDVDRRTIYLSEGLGHGFLALQDNSTVVYLCSAEYNPRREHTICATDPALGIDWPLVDGAAPSLSDRDAAAPSFDEVRAAGLLPSWEETQQFVAELRGQG
1659229..1660308                   PHAGE_Shigel_Sf6_NC_005344: gene 15 protein; MSIM_15330; phage(gi41057293)           1.91e-24            MycobacteriumsimiaeMKLAQVFDPRNNALNLFRLGLAAEVMVFHSWPVTGRTPPHLLLQLLFSVGVDGFFAISGFLITASWVNDPKLRDFLTARALRILPGFYVCLIVTAFVFAPLNLAVNGGSAGELLTSSAPIEYVLKNSAVAYLHHNVGDTPVGVPFADGGWNASLWSLIWELLCYLAVAGIGLAGLANRRWVSPMILAAAVIGALFVPPLTFPGVWTVPQLAVRSAIMFAAGAVMYQWRDAIPARWSLVAVSVVVVVVAAAVLPDYRVVAALPLAYAVVVAAVMIHKQRLRLRTDLSYGVYIYAFPMQQLLASCGLATLPVFAFAGLSTAAVVPLSALSWFLIEKPSQSLKARLKRKWRGSELSEADRAG
1660397..1661515                   PHAGE_Shigel_Sf6_NC_005344: gene 15 protein; MSIM_15340; phage(gi41057293)           2.03e-18            MycobacteriumsimiaeMGLGTTRATRITLGRAFDPRHNALNAWRLLLAAEVILWHSFPITGHGVSAKPILQLLFSTGVDGFFALSGFLITSSWLRDPNLRDYLLARALRILPGLWACLAVTAFVIAPLGVAIQGGHAGKLLFSSAPIEYVVKNSTLLSTLALDIAGTPRGVPEHGVWNGSVWTLVWEVLCYLIVAGIGLVGLANRRWLPVGALALGIVAAILLPPLTYPGPWTNLQLAVRFAIMFSAGAVMYLWRDVIPARWSLVAVSVLIVVASSLLPDYRVIGALPLAYAIIVSGSLLRHERLRLRTDLSYGAYIYAFPVQQLLVICGLAALHPVLFFVVATAATLPLAALSWFLIEKPARSLRVRLNRKVKRKPADAELAYASRT
1661554..1662624                   PHAGE_Shigel_Sf6_NC_005344: gene 15 protein; MSIM_15350; phage(gi41057293)           2.87e-17            MycobacteriumsimiaeMKLGQVFDPRSNALNALRLAMAGEVILWHSFALTGVLPPSGPVRRLLFGLGVDGFFAISGFLITASWLNNPRVRDYVVARALRILPGLYVCLVVTAFVIAPIGVTLQGGSGAGLLMSSAPFEYVLGNSAVALLKFDVGGTPTGIPYPGVWNGSLWTLIYEVLCYAAVVVLGLVGLGRRRWTSVVVLALAVGLAASLPPMTFPGTWSNAQCIARFAVMFAAGAVMYQWKDAIPARWSFVAGSVVAVAASSLLPDYRLVGALPLAYVLIVSGALTHNEYLRLPTDLSYGTYIYAFPIQQLLIIGGLGHLNPLLFAIIATLTTLPLAALSWFLIERPAQAFKSRLRRRWRGPELAASPA
complement(1662578..1662982)       hypothetical protein; MSIM_15360                                                     N/A                 MycobacteriumsimiaeMNIVIRAGYAASLLSSSAIHGYLYIHGYQHIPTIGTAFLVQASVAFALAPLILLGGPWWLRWAAAGTAGGSLIAFGLSRAGGFLGFAESGWAPSPYAAISVGAEVLTLLLWGFDGYRAGFRPGWRRVRGRASAV
complement(1662979..1663917)       hypothetical protein; MSIM_15370                                                     N/A                 MycobacteriumsimiaeMNRTDGPAHPMSRRQLMRHTAWFGAAVGFAVAGGEVISHAAGASVSAPARQRPALRFAQVSDSHLGFTGTANPDVSGSFGHAIDQINNLGYTPDFVIHTGDLTHLSTPEQFDQVHQMMNGLRTPHVFTVPGEHDSIDDAGQKYRKAFGSGSVGDGWYSFDIAGVHVIALVNTLNLRKLGHLGVDQLEFVRKDVAGLSGDTPIIVFSHIPLFAMYPDWGWGTDDATQALSYLRRFASVTCINGHVHQLFSKTEGNVSFYSGTTTAYPLPHPGDGPAPKPITLPAGKLHDALGIREVSYTKGETALALKEQRLQ
complement(1663914..1664204)       PHAGE_Synech_S_CAM1_NC_020837: plastocyanin; MSIM_15380; phage(gi472339586)          6.42e-05            MycobacteriumsimiaeMMSMSVTAPAAPVSGDQVAIDGFAFVPAALTVKAGTSVTWTNRDEEPHTVAATDGAFHSPGMGTGATFTHTFATAGTFDYVCSIHPMMHGTVVVTA
