gi|514049966|ref|ARYV01000056.1| Salmonella enterica subsp. enterica serovar Stanley str. 06-0538 [asmbl_id: NC_000000].645238, gc%: 52.12%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
593152..593163                     attL                                                                                 N/A                 GTGAAGGTGCAA
complement(599215..602868)         PHAGE_Bacill_SPBc2_NC_001884: ABC transporter; PP_00609; phage(gi9630145)            1e-24               MPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAALTPLITRQAVNDAIAGDTTHLPLLACG
complement(602949..604064)         hypothetical protein SPAB_03444 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161615659|ref|YP_001589624.1|;  PP_00610     0.0                 MRILFVGPPLYGLLYPVLSLAQAFRVNGHEVLIASGGKFAQKAAEAGLVVFDAAPGFDSEAGYRRQEALR
complement(604730..606145)         PHAGE_Haemop_HP2_NC_003315: tail fibers; PP_00611; phage(gi17981847)                 7e-70               MSQTTITLAFEQWKAQQGATGESVLLDEFVFANVPELDPDQPVDRNETLPPAEQIVHRQAVSRKGVVNDN
complement(606155..606742)         PHAGE_Haemop_HP2_NC_003315: orf30; PP_00612; phage(gi17981846)                       2e-46               MNEFMKKLAGMVLPSWMDRGEPRKLLQTARRFWAEVYGWVTWPLNQFDPLTCTPALLNLLAYDRDISRFD
complement(606735..607919)         PHAGE_Haemop_HP2_NC_003315: orf29; PP_00613; phage(gi17981845)                       3e-114              MTEKPQVDFEEVVKASGMPVTEEEIRDRFNAIATEEGIITNTSRMSPFWRLVTAIVTAPVMWLKEVLIST
complement(607916..608245)         PHAGE_Haemop_HP2_NC_003315: orf28; PP_00614; phage(gi17981844)                       2e-27               MNEILYVDLLIQGNDFVLNTGNEPELCNNRKSIGQDIIHSIIESGLATELIAERSPTMRADIFTRMELLI
complement(608242..610212)         PHAGE_Haemop_HP2_NC_003315: orf27; PP_00615; phage(gi17981843)                       3e-79               MKQLDFTLSLIDKLSRPLKQAQSSVTGFAEKSKAAFMQIGCGVLALAGTGMAIRGALSPAIEMYDALNDA
complement(610400..610657)         PHAGE_Haemop_HP2_NC_003315: orf26; PP_00616; phage(gi17981842)                       2e-15               MEKIKLCVCGADIIFEPNQTAYNKFINEMAMDNKVAPAHNYLMRIVATESKEALAEILKRPGAALQLVSK
complement(610804..611136)         PHAGE_Erwini_phiEa104_NC_015292: hypothetical protein; PP_00617; phage(gi327198401)     2e-10               MDRVVAGWLMTVVLAFWAGWKAANWQRDSIDLAISRSASATGETLASMASESGRKLEEQLEALKNAPPRE
complement(611136..611477)         PHAGE_Pseudo_PaP2_NC_005884: hypothetical protein PaP2_gp17; PP_00618; phage(gi48697087)     9e-26               MTLSEKQQLFTVMVANLIHWAEEHGYRLTFGEAYRTPEQAALNAKKGSGITNSLHTRRLAVDFNLFVNGQ
complement(611474..611767)         PHAGE_Burkho_KS9_NC_013055: holin gp22; PP_00619; phage(gi255033753)                 2e-17               MQDYEKGFIALAIMGALIALGKMLNSDEPITARLVLGRVIVGSALSVAAGVALYFVPDIHPLALAGIGSA
complement(611777..612232)         PHAGE_Haemop_HP2_NC_003315: tail tube; PP_00620; phage(gi17981838)                   4e-42               MTKRISGMSFDAYIDGELIHIEKISLDITDNSAAAQTRGVPDGHVDGDVAAEGEIEVSSKVLQVLTAKAR
complement(612229..613356)         PHAGE_Haemop_HP2_NC_003315: tail sheath; PP_00621; phage(gi17981837)                 7e-107              MTWPTVTVNQVNQLLGETNEVERTLLFIGTGTKNVGKTLAVNAQSDFNALLGEGNSPLKSDVLAAMANAG
complement(613353..614060)         PHAGE_Haemop_HP2_NC_003315: orf22; PP_00622; phage(gi17981836)                       9e-13               MIAGGELNKKQLTELRKALVSMELPPQKRQRLIWRLAKYGVIAAAKRHVRNQESPDGQKWPGRKTKRKGK
complement(614057..614563)         PHAGE_Haemop_HP2_NC_003315: orf21; PP_00623; phage(gi17981835)                       1e-11               MSQTQIQSLTAFFQENVPPRAMQSFDSVLDEMKFIPAAKDYGLGQYRQAVIRYDAVLSWARFPYRLCPPQ
complement(614560..615063)         PHAGE_Haemop_HP2_NC_003315: packaging protein; PP_00624; phage(gi17981834)           6e-25               VCHCAVETGQSAFFGGFMFSGKPLDYQDEPLANNGFWPDLNLKDFQAQRSLPPDIDADTISQALLAAVAE
complement(615109..615810)         PHAGE_Aeromo_phiO18P_NC_009542: putative terminase small subunit; PP_00625; phage(gi148727154)     2e-54               MALSPAQRHSQRIAMEQKLKRSQALETTESMHLLVKALETDVGHVRSLPTIADRIEFKRDVLLPRWVPTV
complement(615814..616836)         PHAGE_Aeromo_phiO18P_NC_009542: putative major capsid protein; PP_00626; phage(gi148727153)     3e-92               MHLNNRARELLDGYSAGMAQQFGARDASRYFSLSNPQENALRLALLESVEFLDMLTCLDVDQLSGQVISV
complement(616898..617701)         PHAGE_Haemop_HP2_NC_003315: scaffold; PP_00627; phage(gi17981831)                    7e-36               MSHLKTDWLCVATEGDTVDGRIIKRQWIIDMGETYDYNHWVALIWPEHEDDYGNFGEVLEATWNDGEDGL
617741..617854                     hypothetical protein SN31241_38300 [Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1] gi|528820542|ref|YP_008361745.1|;  PP_00628     3e-13               LPNKTIAALRFILNSSDITLYRMQTNYHHRFFITATA
617862..619637                     PHAGE_Haemop_HP2_NC_003315: terminase; PP_00629; phage(gi17981830)                   1e-180              MAKYSEELKGVVRALYLRRYTPKEIASELNLPNARIVYYWAEKYSWADLLSFESTEEAIERRYQLLASRD
619634..620695                     PHAGE_Haemop_HP2_NC_003315: orf15; PP_00630; phage(gi17981829)                       6e-82               MSKKKHFVKRDQRGDKSKKMSIITFGKPEPVLTTGTDYRDIWYDNAADHFTQPIDRLALAQLINLNGQHG
620746..621015                     PHAGE_Vibrio_8_NC_022747: zinc-finger protein; PP_00631; phage(gi557307492)          2e-20               MRVLKIECPECGSKAVIRKTNRKHRQIADIYCACSDVECGHTFVMNLTFSHTLSPSAKTGDAMVQKILNA
complement(620989..621201)         PHAGE_Salmon_RE_2010_NC_019488: hypothetical protein; PP_00632; phage(gi418489693)     2e-08               VQDLFLETIALQRIALFTRLIANSKCTGCEKDIALAWLSELTADLESKLDEYEGKSPQKGGLSCGGSRFQ
complement(621320..623341)         PHAGE_Erwini_ENT90_NC_019932: replication protein A; PP_00633; phage(gi431810936)     3e-128              MTLAINEDCYAVDAWRRETFAPGTPADVTITERRLWAVNPQDHKWRAQYLHEIPDWLAGYFGRRYEKLFT
complement(623338..624198)         PHAGE_Entero_Fels_2_NC_010463: DNA adenine methylase-like protein; PP_00634; phage(gi169936055)     2e-69               MAVKTPLKWVGSKARLMPQLRPHLPEGKRLVEPFAGSCAVMMNTDYDEYLIADVNPDLVNLYKAMAYHTD
complement(624189..624422)         PHAGE_Entero_Fels_2_NC_010463: hypothetical protein STM2732.Fels2; PP_00635; phage(gi169936057)     3e-05               MHMTRQDLPATKSDTDLLTMLTKATQEGKAAAADLCSIRLDKLATHAANEGLSATEIVELIREEAAAICS
complement(624490..624891)         hypothetical protein SN31241_38380 [Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1] gi|528820550|ref|YP_008361753.1|;  PP_00636     9e-70               MSIISVEGKSLGAELAVWGVPHNYAVAFAEKSTSKNGRIALHPFFFNDTEHMTNPRHWLAINAAFWCCVY
624964..625182                     hypothetical protein SN31241_38390 [Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1] gi|528820551|ref|YP_008361754.1|;  PP_00637     2e-33               MGWTIFTGRSAVRLEKSLSRKLPNPLKVKRAREIPWRSCIMSRYSNRSKSSRQQQLLKLRLKTPDLELIA
complement(625306..625533)         hypothetical protein SN31241_38400 [Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1] gi|528820552|ref|YP_008361755.1|;  PP_00638     3e-38               MKAFVTYLKKESPAMQLPSGSTGWIELPNGQRWNPGHTYKFNAHESVQMKGGSVLRFLTTKTRRLLGMVG
complement(625542..626015)         hypothetical; PP_00640                                                               N/A                 LGICAGCFIGGFICHPVGRKNDSENTAQPAELNADASKSSSKDKQKIHQVISAPVECFGHHFEVIAVGGL
626034..626234                     hypothetical; PP_00639                                                               N/A                 LLSDIHAASDAEIARRLDELEEFDSNAPTSLYNPARNRASIELRRDIEPLTKFEKLMALLAGGIPK
complement(626283..626795)         PHAGE_Salmon_RE_2010_NC_019488: regulatory protein; PP_00641; phage(gi418489686)     5e-39               MVTMFDYQTSKHAHFDAACRAFAIEHNLEDVAAAVGMRPQILRNKLNPAQPHRLTCDELLAITDYTEDAR
627387..627398                     attR                                                                                 N/A                 GTGAAGGTGCAA
627398..627751                     PHAGE_Haemop_HP2_NC_003315: cI repressor; PP_00642; phage(gi17981818)                8e-08               MFDHLSSDTIRIPAYRIDGSNLIKISSLIFDKTIIPNHQGDVEFIIDGQIKYLIDKADYAVGDGKFLIEY
627751..628767                     PHAGE_Haemop_HP2_NC_003315: integrase; PP_00643; phage(gi17981816)                   3e-88               MTVRKLDTGEWLCDLRPNGIKGKRIRKKFVTKGEALAYEKYIASEIEDKPWIAEKQDNRRLSEIIEQWYS

#### region 2 ####
630072..630094                     attL                                                                                 N/A                 AATTGGTACACGTTTAGGTACAC
630145..631332                     PHAGE_Entero_P4_NC_001609: integrase; PP_00645; phage(gi9627511)                     7e-66               MARITRPLTNNEILKAKPREKDFTLHDGDGLFLLVKTTGKKLWRFRYQRPGSSSRTNLSLGSYPALTLAA
complement(631355..633934)         PHAGE_Parame_bursaria_Chlorella_virus_1_NC_000852: hypothetical protein; PP_00646; phage(gi9631809)     5e-11               MSMKDLPNWLVRNKGFIKKLEKLTIASVVGQFPSVRASHENDISDLDISYLLTCGSILSQSNDELCQDSA
complement(633936..634880)         hypothetical protein STAUR_7377 [Stigmatella aurantiaca DW4/3-1] gi|310824602|ref|YP_003956960.1|;  PP_00647     8e-83               MDALQTALEKLLRDDGDTIYSYFHEIKSDYLIEGTSASCHFHCINLDGNGRPKINALIQFLVGKVIDYSI
635004..635189                     hypothetical protein ENC_43910 [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|479274321|ref|YP_007847600.1|;  PP_00648     1e-06               MQVHKPTQAAPVLVLRGIKNTGICMQNHAPYGCMAFCGKNSGIFGDFFACYCAASSARRRV
complement(635153..635707)         PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; PP_00649; phage(gi9627520)     3e-59               VTTVTIQQAFEACQTNKNTWLKRKAELADLELEYREQLLAGDEQIPRRMQDLRDNIDVKKWEINQAAGRY
complement(635721..635960)         PHAGE_Entero_PsP3_NC_005340: Pag; PP_00650; phage(gi41057379)                        3e-14               MFHCPFCKKTAHVRTSRYLSENVKQRYHQCTNIECSATFRTIESVDGVIRAAPEKTDPAPVTPPPPRKVQ
complement(635964..636758)         PHAGE_Entero_P4_NC_001609: head size determination protein sid; PP_00651; phage(gi9627518)     2e-20               VQEASESFQVEHTESLNMKPELIIKAMQTVISKQDEGAEQRIAGALAALNEAKDAHTASMGKLSDIEASI
637248..637514                     PHAGE_Entero_P4_NC_001609: transcriptional regulator; PP_00652; phage(gi9627517)     8e-32               MHTAFSSPSSAPAAPLMPVSDTVHERFIRLPEVMHLCGLSRSTIYDLISREAFPKQISLGGKNVAWAQSE
637511..638062                     PHAGE_Entero_P4_NC_001609: putative CI repressor; PP_00653; phage(gi9627516)         2e-31               MMMTVQQTAPFSGLLPFAVSRYSFPAVAKSAAGIGVPFTTLATPDAPCVFFCVYASAHPFLIQRFICLWI
638059..638286                     hypothetical protein SPAB_03424 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161615640|ref|YP_001589605.1|;  PP_00654     2e-34               MKHTTITARDLECLEHMRNVGHLVGELMQVQDCTTVRRDPAQQLQLTSVIYLMTAQLDGVVERCNQRWLT
638283..638603                     PHAGE_Entero_P4_NC_001609: hypothetical protein P4p07; PP_00655; phage(gi9627513)     3e-49               MKTALSPALRAALYRRAVACAWLTLCTHQHRYPHLTLDALENAIADELEGFYLRQHGEEKGRQIACALLE
638618..640951                     PHAGE_Entero_P4_NC_001609: DNA primase; PP_00656; phage(gi9627512)                   0.0                 MKMNVTDTVKQACGHWPRILPALGVKVIKNRHQSCPVCGGSDRFRFDDKEGRGTWFCNQCGAGDGLKLVE
640927..641106                     hypothetical protein SPAB_03427 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161615643|ref|YP_001589608.1|;  PP_00657     2e-18               VRRTRSDITNLRPAKAGLFLSDYYRKVNNPLFTLHRIFTRYHHEIIEKKQKVNSVNSKT
641373..641395                     attR                                                                                 N/A                 AATTGGTACACGTTTAGGTACAC
complement(641996..642352)         PHAGE_Salmon_SSU5_JQ965645: putative repressor of phase 1 flagellin; PP_00658; phage(gi390013956)     1e-11               LILASDKPKGNKRIEVKLESLAILEELSGNDAFNLSLMPTDEFNLQQYTPSRRDYFSICNKCYKQGVGIK
complement(642603..644123)         PHAGE_Lactob_Lb338_1_NC_012530: putative tail fibre protein; PP_00659; phage(gi226377752)     9e-08               MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNAND
