gi|574087340|ref|CM001848.2| Lactobacillus casei LcY chromosome, whole genome shotgun sequence. [asmbl_id: NC_000000].3042753, gc%: 46.33%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
559140..560069                     PHAGE_Lactoc_P087_NC_012663: putative cysteine synthase; PP_00557; phage(gi229605000)     1e-89               MVTAADNITGLIGNTPLLKLNRVVPEDAADVYVKLEFFNPGGSVKDRIALAMIEDAEYKGVLKPGGTIVE
complement(560263..560808)         Hydrophobic protein [Lactobacillus casei W56] gi|409996218|ref|YP_006750619.1|;  PP_00558     3e-100              MSQIILLIAALFFFTRHVFRFERISRLTLVIIPAYTLVTGILLVSHKRPTFLALGVTILIGAILGWFQTT
560893..560904                     attL                                                                                 N/A                 GCAAATTATTCG
560930..561001                     tRNA                                                                                 N/A                 GTCTCCATGGTGCAACGGATAGCATAATGGTCCTCGAAACCACAGATCCGGGTTCGAATCCCGGTGGAGGCA
complement(561129..562298)         PHAGE_Lactob_phiAT3_NC_005893: putative integrase; PP_00559; phage(gi48697280)       0.0                 MATFRKRGKYWEYRVKYTDSAGKQLVASHGGYRLKSSAQDAAEAVEDDLKRGGDPSKQDVLLLDYWDQWA
complement(562411..562671)         PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF33; PP_00560; phage(gi48697293)     3e-10               MKPITVISYKFGEKTWKNFEGEPIKKYEHSVLLDISDTEVFTDKEKTELNDKIVVPFSRIREKRFIKDIP
562761..563381                     hypothetical protein BN194_05560 [Lactobacillus casei W56] gi|409996221|ref|YP_006750622.1|;  PP_00561     8e-115              MEMQQLILAGIPGFLTFIWLDKLDAIHFDLPARQADRTIALILISMLNAAGGLAIYQQIWGTVGRSFWSE
complement(563365..563601)         hypothetical protein BN194_05570 [Lactobacillus casei W56] gi|409996222|ref|YP_006750623.1|;  PP_00562     1e-37               VLAGYKKTPAAVVEEQLDYVEEKKLQKDNSDKAKSLPDKKSGLFFDRNVQNRSIKLVHKDPVPHKPKMPD
complement(563794..564501)         PHAGE_Lister_A118_NC_003216: gp34; PP_00563; phage(gi16798817)                       6e-07               MNLLPEDQVDAGQAYDGLGNSEIIDTAFENKIWQLSKFAALNQPVSVDIDGKVYAEIRQTKYFIGKIPND
complement(564660..564980)         PHAGE_Lactob_prophage_Lj928_NC_005354: hypothetical protein Ljo_1458; PP_00564; phage(gi41179295)     2e-11               LVDTEARLIILNNKWPNANELPFQAAHECAHILNGDNGKLRYTNQYTKSRTENGANQRALSIIVPMYFAD
complement(565075..565317)         PHAGE_Lactob_johnsonii_prophage_Lj771_NC_010179: cl repressor; PP_00565; phage(gi163932156)     4e-08               MTPSTENVQKVADVLQVSVDYLLGNTDNPNPDNEGSKPVDLSGTNIFTYQGQPVRQDDWEIIQAILERRN
565672..565920                     hypothetical protein BN194_05610 [Lactobacillus casei W56] gi|409996226|ref|YP_006750627.1|;  PP_00566     9e-41               MVNVQLNWTANRNDWKGYLLHLNLSQLDIAKFLGISDQVMAILVKKMTDGQGLTANQIDKDRWKRAIEYV
565962..566162                     hypothetical protein BN194_05620 [Lactobacillus casei W56] gi|409996227|ref|YP_006750628.1|;  PP_00567     5e-28               MIKPIDAIRNELPVVTSKTLDLFESAVSQELQKRNPKATFQVSILGMAVLGLLVATRLEEVSDINN
complement(566133..566966)         hypothetical protein BN194_05630 [Lactobacillus casei W56] gi|409996228|ref|YP_006750629.1|;  PP_00568     5e-157              MSKPIDAVAVENISKILGEYTTGPKITKMFSLLGFFDYDLQRQTDNQWFKASTKWRRLDETIRHECNASH
567027..567785                     PHAGE_Lactoc_bIL285_NC_002666: anti-repressor; PP_00569; phage(gi13095686)           9e-42               MKEGNALNEPQPIEQNGQRVLTTEQLAELYGTTVGVVQMNFKRNSNKFIEGKHFFKLEGEQLRAFKNEPT
567786..567965                     hypothetical protein BN194_05650 [Lactobacillus casei W56] gi|409996230|ref|YP_006750631.1|;  PP_00570     8e-26               MNERPKEKLTNVVKVQDKDVEDQVTGMVIDLLKQKGFTFANFESVVARVKSHYQNNATI
complement(567958..568209)         hypothetical protein BN194_05660 [Lactobacillus casei W56] gi|409996231|ref|YP_006750632.1|;  PP_00571     2e-44               MVQVPYYDNPGGALAVTVELPHAANVYLVDQANFNAHQRGDHFTYFGGHYDESPVTIRVSGAGRWYLIAE
568275..568631                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF25; PP_00572; phage(gi48697285)     2e-63               MPLLQVVEDDQISSKKYLAVEEEELAKMIEENQELKRKLAARGMWTLTTATSYVEGHNNTWVVNNILNVP
568716..568919                     hypothetical protein BN194_05680 [Lactobacillus casei W56] gi|409996233|ref|YP_006750634.1|;  PP_00573     3e-29               LNSPETKLNKKYSPIFGDGISVSANDVQMAVDGIVATLSRHTSNLAEAKAILDLIDLDQYAELKLIK
complement(568902..569447)         hypothetical protein BN194_05690 [Lactobacillus casei W56] gi|409996234|ref|YP_006750635.1|;  PP_00574     5e-94               MNKYELFSSVVQALTSIVAVVLSTIALIRSSKSERDANKPYIVSFLKVVRSSQTTIIYLMIKNFGRTGAT
569628..569942                     hypothetical protein BN194_05700 [Lactobacillus casei W56] gi|409996235|ref|YP_006750636.1|;  PP_00575     2e-55               MAREIGKQLDRLESLAYKVRTDQYLLDYLREWAETKCDLFRADDPHMTDGEKIQDRLFLKDNFKKYMDIL
569935..570681                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00576; phage(gi557308027)      2e-30               MNEKPGYYAIIPAGVRYDKQLPQGAKLLYGEITALTNKNGYCWASNDYFAKLYSVSIGTIKSWLKCLEDN
570696..571520                     PHAGE_Lactoc_r1t_NC_004302: putative replication protein DnaC; PP_00577; phage(gi23455731)     5e-15               MSNLETNQGRLAAIETFAERCPDCGSLLYRPKGLSKVTGKKMAGVCMNCGYKQPPTEPKNVTPDMEKEAR
571520..572038                     DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Lactobacillus casei W56] gi|409996238|ref|YP_006750639.1|;  PP_00578     1e-95               MKEYVIMDTEFNSTSNRAIQISAVRIRDGLHIADQFNRFIPSPDKFDQLHIIRTSNMRYSDYLALPSLQQ
572085..572507                     PHAGE_Strept_phiNJ2_NC_019418: hypothetical protein; PP_00579; phage(gi414090240)     4e-18               MDKLNLNLNELADGAIKEKLTKALAQVANNILDPNTDQSKARKVTIALNFKPDDSGVVKLTTDVKTTLVP
572509..573246                     PHAGE_Clostr_phiCD38_2_NC_015568: hypothetical protein; PP_00580; phage(gi333798150)     4e-39               MTTEADALKFTAEQAVTANGKRIIETKNRQFLINGNGDIREFRPNDGANEALQVHTLTAVVDYIGKVSER
573615..573947                     hypothetical protein BN194_05770 [Lactobacillus casei W56] gi|409996242|ref|YP_006750643.1|;  PP_00581     6e-56               MNSLLIKLLICAVITVVICAYFFWLLFDHFVSNRRSKTVQIGSTVFIVRIGKKQYVSYFSKCSKEFNTSS
574462..574905                     PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein Lrm1_gp49; PP_00582; phage(gi195661249)     3e-57               VVRATRYFSPIDHDKTIENAKEVLGNYWHHKRLAQRTKIALRSPVMDGMPKSPSYGNKAEDKLVSHADEL
complement(574991..575107)         hypothetical; PP_00583                                                               N/A                 LPKFRFYALVWQCGMRESNPPDYLSQSICHALPQLYHH
575419..576072                     hypothetical protein BN194_05790 [Lactobacillus casei W56] gi|409996244|ref|YP_006750645.1|;  PP_00584     2e-120              MSFISGFLTKDFCSIVADGRMSQGAKTVGENYKKFMLAESNILIATTGNAQVADIIKDFIKRLHVQSNGA
576323..577321                     PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; PP_00585; phage(gi588498272)     1e-57               MSPYIHLTLKDRESILLGISTGKTLDTIAKEIGRSKSTVSREIARNGGWRSYSAATAQDRYRRVRLASRR
complement(577517..577735)         PHAGE_Lactob_LF1_NC_019486: hypothetical protein; PP_00586; phage(gi418489439)       3e-20               MSLDGKVDSTKDKISGKAKEVEGKVTGDKARETQGKAEGILGKAKEKLDDAKDAVKDTVDDVKSKLSTDK
578158..578988                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF50; PP_00587; phage(gi48697310)     1e-100              MQWTDEQIGDIRKLASEGFTRRETADKLGISYDALQGKARRLGIEFQKPLKNEYDSDGTNRETPSADRKV
578982..579281                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF50; PP_00588; phage(gi48697310)     2e-54               LLGHVGIMLAHGDVAKNKLTGLFPFEYKKIFNMAKTYELHSGHYHSERFKDDRGIMWRQLGTAKPNDPYE
579364..579603                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF52; PP_00589; phage(gi48697312)     2e-32               MQAIIYTKPHCQKCRRTVFKLSRVMPVQTITADADDYERFRKLGYRSMPVVTIYEADGTHDEWCDLRVDK
579744..580055                     PHAGE_Lactob_phiAT3_NC_005893: putative transposase A; PP_00590; phage(gi48697273)     7e-08               MTNTAIRYTPEFKQTLIDLHEKGHSFKELHEEYGPSLDTIRKWVQAATVIAIDHQGTAVTNEQFKQLQKE
580085..580813                     PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; PP_00591; phage(gi17546156)     9e-07               MGRKGSRYTLEEKLFYIGLVREGGWAPWAVQREYGVRHNQVRQWLERFEATGVDGLKPRSVHQKYAEEFK
580858..581688                     PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; PP_00592; phage(gi24373866)          2e-23               MMGVSRAAYYKWTHRKVTVHEQENQAIRDYIIELEEKNHYVFGVKRLMTYINAETQYHVSHGRVRRIMRL
581767..582597                     PHAGE_Lactob_phiAT3_NC_005893: putative transposase B; PP_00593; phage(gi48697274)     5e-28               MIQDQLSRGHRITVILRALRIPSSTYYDWLKWHPKSRNRRRIKLKELVQVLWQRRKFYGYVRIAKRIRKL
582912..583070                     hypothetical protein BN194_05900 [Lactobacillus casei W56] gi|409996255|ref|YP_006750656.1|;  PP_00594     8e-21               MLWLIFKCSXWVLLGFIXLCELAXIRISGLCSREEERQEALEKHRQQAKSAP
583327..583605                     hypothetical protein BN194_05910 [Lactobacillus casei W56] gi|409996256|ref|YP_006750657.1|;  PP_00595     3e-43               MAEXVGIWLHDRNLKXISKDRDALSYRIQASWVKDHTDYPIKPGMTVVIGNXKPPNQLKXVLVLKVGSAE
583617..583883                     hypothetical protein BN194_05920 [Lactobacillus casei W56] gi|409996257|ref|YP_006750658.1|;  PP_00596     2e-42               MFNLVLQTKDIKEAKRKNGLLEIRFPHPKEKALMLKLRHAVLSIETGWPILXDTTCIGEIVRVLPSKXRV
583902..584078                     hypothetical protein BN194_05930 [Lactobacillus casei W56] gi|409996258|ref|YP_006750659.1|;  PP_00597     1e-25               MAISKAQMNNQKQMLTEILKQQNLAYEDWLYQRMTDEIESHRKLILQALKNLNMKEGH
584080..584307                     hypothetical protein BN194_05940 [Lactobacillus casei W56] gi|409996259|ref|YP_006750660.1|;  PP_00598     2e-33               MQGKVIALLSAILGFIIAIAGGYAAVKFGLMGIAHMTKDQQKIREARDGMTNVAIGLIVVIFASAAVAWL
584350..585591                     hypothetical protein BN194_05950 [Lactobacillus casei W56] gi|409996260|ref|YP_006750661.1|;  PP_00599     0.0                 VYAKFECSRKLRQFLKKKRQLSLSEAEKMISAADDYAIQNHFKEDVNFKIVSQDGIEYEDNLPIGTGQGW
585569..587119                     PHAGE_Achole_L2_NC_001447: envelope protein; PP_00600; phage(gi9626524)              1e-11               MKNQQTNNKKRHIIITTTAVALLGAGGLWAATQAHSDQQATHTSSYQTKMQKPKASKGSQAKKEKGKNTV
590704..590715                     attR                                                                                 N/A                 GCAAATTATTCG

#### region 2 ####
930551..930564                     attL                                                                                 N/A                 TCCTGTTCGCGGCA
complement(930687..931826)         PHAGE_Lactob_Lrm1_NC_011104: integrase; PP_00941; phage(gi195661224)                 9e-82               MATISITQENTGKWRYRVYYYDNQGIRHAKSKRGYARQAAAKRDAQILASELEQGANMLDREVGFVNYFE
complement(931944..933011)         Abi family protein [Lactobacillus casei W56] gi|409996593|ref|YP_006750994.1|;  PP_00942     0.0                 LKADKPFKTYGEQIAKLSDHNIIVPNGQEAYVKSMLMQYGYYNLVNAYQDKLEHTDDEKFCPERPFNLFS
complement(933156..933587)         hypothetical protein BN194_09290 [Lactobacillus casei W56] gi|409996594|ref|YP_006750995.1|;  PP_00943     7e-75               MTMEVNGKVVRIISKSEVIIDIGRDAHVEVGDKVEIIVVGDKITDDNGRSLGYFTFQKDSLEVTHTEPSF
complement(933657..934139)         hypothetical protein BN194_09300 [Lactobacillus casei W56] gi|409996595|ref|YP_006750996.1|;  PP_00944     5e-86               MSIKIVVLKFDAYDGELVPFDPFSTDPLPVEYFQVRLFVRAPYYSETFDDQTLLVRRYMRRFKEIKNRFI
complement(934143..934436)         hypothetical protein BN194_09310 [Lactobacillus casei W56] gi|409996596|ref|YP_006750997.1|;  PP_00945     1e-48               MNNLLIQHQLEDSRPIRTYKAKIVIKLLEDNQTLPRNERTSQVQVLREASQKTDELVQKVMATSKHDRTA
complement(934620..935480)         hypothetical protein BN194_09320 [Lactobacillus casei W56] gi|409996597|ref|YP_006750998.1|;  PP_00946     3e-160              MEKVNYKDADFLAHRIEVFVRNHFDNAIEYNAVPFILAEIQKLPDDFFQFPLSDGILGTTIVDSAVTVTI
complement(935467..935835)         PHAGE_Oenoco_phiS13_NC_023560: Phage transcription regulator, Cro/C1 family; PP_00947; phage(gi589286224)     8e-06               MSALYDRIYSLASTRGMSIPEVAKKAGLSSAIIYRWRTNDANPTKPSLIAVATALGVSEDELVGKKEVDP
936091..936288                     hypothetical protein LBPG_00023 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|532356226|ref|YP_008446060.1|;  PP_00948     1e-28               MSTMLKRFKKQLIDLDLTQAEVARKFGWSSQYVRDLMGGMAFGPAAERNRAAVIAFLAKVKEESK
936285..937007                     PHAGE_Lactob_phiadh_NC_000896: hypothetical protein phiadhp07; PP_00949; phage(gi9633007)     5e-38               MNGLVIMHEQQAVTTSLKVAEVFGKEHKVVLRAIEDKIQSAQNYADYKKMFEASTYTDSRGREQKVYFMN
937015..937227                     hypothetical protein BN194_09360 [Lactobacillus casei W56] gi|409996601|ref|YP_006751002.1|;  PP_00950     7e-30               LESQKVIRKELPVVACQTIDLLEAAVSRELQKKTPHATLRVGLLGIVALGLIAITRVDEFSSFEAQKLER
937336..937560                     PHAGE_Staphy_phiRS7_NC_022914: hypothetical protein; PP_00951; phage(gi560185993)     1e-05               MSEWWSTKDVVKRYKHDMRWLKKNILEKPEFMEILRYRMVMYAGDGGKDWTFEPVKFSEFMRNYFPEIAK
937649..937861                     hypothetical protein BN194_09380 [Lactobacillus casei W56] gi|409996603|ref|YP_006751004.1|;  PP_00952     1e-36               MSLHQWDNINDLHHAEKSGWGEESKFEELEDYQGNALHPGHTYWLYQGELFDEDEALEFLDSLGATQVIN
937871..938746                     PHAGE_Entero_phiFL1A_NC_013646: endonuclease YqaJ superfamily; PP_00953; phage(gi281416339)     3e-62               MKPKYISTAKLNHAEWLDFRRQGIGGSDVAAILGMSPWRSPYSVWAEKTGRLPINDSGNEFTHWGTIMEP
938749..938943                     hypothetical protein BN194_09400 [Lactobacillus casei W56] gi|409996605|ref|YP_006751006.1|;  PP_00954     8e-31               MDYYNVAYDLYSNHGHLSGEADHVYVPDGTFGAVTIDDKDGSSLIVMSSEIQHLRITPIKEDED
938943..939830                     PHAGE_Lister_A006_NC_009815: gp42; PP_00955; phage(gi157325459)                      1e-61               MATTSLQKQLNEVSQAKGKSSAGSVVKDLLSAPAMQKRFNEVLGKSAQQFTSSIINVVNSSQQLQGVDAM
940089..940934                     PHAGE_Lister_A118_NC_003216: gp49; PP_00956; phage(gi16798836)                       1e-48               MADGGWIKLYRSIRSNWIWANGNERYAKWWMDLIMMVNHEPRKVLVNGNLITIGVGQRLTSIKKLSETWG
940972..941793                     PHAGE_Lactoc_P335_sensu_lato_NC_004746: putative DnaC protein; PP_00957; phage(gi30089873)     4e-18               MNGLQISPSIWAALETFGELCPDCGKPLYRPKPLSRVTGKKMAGACMYCGYKQPPTEPKKQKPDLERKAR
941790..942089                     hypothetical protein BN194_09460 [Lactobacillus casei W56] gi|409996611|ref|YP_006751012.1|;  PP_00958     2e-50               MSDLRITKRDEKDQSSDWMTLVHEEDDQVLIDLLSIAKSKIAYAGIYLDREEVKTLANWLDEFLYSTREN
942055..942336                     PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; PP_00959; phage(gi399528947)     1e-13               MKTHNTLDDLNNHLFSEMERLNDDTLEGESLEQELRRADGISKIATQIIGNARTILSAQVAYQNNESADP
complement(942461..942589)         hypothetical; PP_00960                                                               N/A                 LIDFKKLIPMFSNWINLEIWLAIIDYFSSINMVPMTPVSNLS
942645..943223                     PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein BC1875; PP_00961; phage(gi31415769)     4e-19               MSRLLDDKQLKAYKKFVPGHTGAEIAKMVYENWGIQLTVQKVHALNIRNNIKSGLYQKYFGKADPRRSSS
943237..943659                     PHAGE_Lactob_Lc_Nu_NC_007501: putative Holliday junction resolvase; PP_00962; phage(gi78000012)     7e-43               MMIQINIPGEPVPQGRPRFASRGKFVSTYDPPKSKAYKNEVAVAARDQYAGEPLSGPLICRVTIYRPIQQ
943664..943927                     hypothetical protein BN194_09500 [Lactobacillus casei W56] gi|409996615|ref|YP_006751016.1|;  PP_00963     1e-41               MTELKDNSITVFGNVINSTEKTVNKDQVVELKVRIQAKELDGKRDSFAKVLKGNAQMVFTPSQTELDVDG
943951..944274                     hypothetical protein BN194_09510 [Lactobacillus casei W56] gi|409996616|ref|YP_006751017.1|;  PP_00964     3e-56               MNNMAKTLRREDQRAFDTWFNRWIKNTRLEQSLIEAARKGYKSLIVYDRKNDMDVYQKRRFEDSRFVKRL
944353..944802                     PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; PP_00965; phage(gi85701424)     2e-23               LSREHKSRFEWLQDYLELDDEIRYLEWKIRKSNAEVDRWSEGDLSRLHVSGSDSRAAHVGEEVPELQTKL
945024..945407                     PHAGE_Paenib_PG1_NC_021558: hypothetical protein; PP_00966; phage(gi514231252)       5e-22               MMAMVPRDISEPFYHSKEWKKTRAAYIASVGGLCERCLKRGIIKPGYIVHHKHYITADNINDPSITLNWD
945477..945851                     PHAGE_Paenib_PG1_NC_021558: hypothetical protein; PP_00967; phage(gi514231254)       8e-06               MSIEKQDVAIQLEYERLRQTLSGISAEKLAAADNLIQRCAFMTITLQILEDEVKSKGPTILMHNGKQTMR
945854..947584                     PHAGE_Clostr_phiMMP04_NC_019422: terminase; PP_00968; phage(gi414090443)             8e-126              MADIQVKIRVDRHVGYPPDYDPITQYWQSFVQNGGDQVVGKKIYRTYKKLIADMHNDNSEWYYSNRRGNH
947603..948247                     PHAGE_Paenib_PG1_NC_021558: portal protein; PP_00969; phage(gi514231255)             1e-48               LAFWNNLFHRKNSGVTVTPEYKLVTNYGNGFFGWNGKVYESDIIRSAIEVKATTIGKAVAKHIRSGTGDS
948256..948936                     PHAGE_Paenib_PG1_NC_021558: portal protein; PP_00970; phage(gi514231189)             5e-67               MEIVTTTDQGIVSAIKNSAAVRWLLKFNTAMRPEDIEKNTKAFVASYLQTQKDQDSIGAAGVDAKTDATQ
948914..949621                     PHAGE_Paenib_PG1_NC_021558: peptidase S14 ClpP; PP_00971; phage(gi514231190)         3e-45               MTTVVPIKGDIVTNDYGWLYDLFGDDYASPKSVSDLINKANGDDLSVEINSGGGILDAGSEIYTMLRAYK
949626..950855                     PHAGE_Clostr_phiMMP04_NC_019422: major capsid protein; PP_00972; phage(gi414090446)     4e-72               MNKEEYLKQREALMNDARTAIDKGKSEDANKAMKSVKDLDAKWDQQTKDQANLAALDDHAPITLAQVAPA
950929..951177                     hypothetical protein BN194_10830 [Lactobacillus casei W56] gi|409996748|ref|YP_006751149.1|;  PP_00973     1e-39               MADTPDRSAEFLKALQKGKVVAVGNKGTGEVDVTGLADGTVVKDGDYQVVFDTDNTKTLSSVASDPIDAP
951191..951517                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2588; PP_00974; phage(gi31415853)     3e-10               MADEKSEEEPTLLDLLKQHIRLEDDMDPSMLQFYLDAADKYVQRKVGHSVKYLQLMVATVMNDNRSAGDD
951507..951794                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2589; PP_00975; phage(gi31415854)     3e-06               LELKDGVDAHDRPKQTWEDKRVLYYADIGITSTEKYLAQQNKQDVVLRILIRRDMSITQGGNRVRIRGTD
951952..952107                     phage protein [Lactobacillus casei W56] gi|409996750|ref|YP_006751151.1|;  PP_00976     1e-22               LYTKGVEDELLPFIKTFDDVPFQSFRGIPGDENDETITDLYTYIEVIAGGQ
952097..952480                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2591; PP_00977; phage(gi31415856)     3e-11               VVNNNGFETMAKYLSGIKVDESVSKEGLVAAASQFADKLRPELPSEPNAPLAQTYGTLRDKLQVVDKGDH
952492..953139                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2592; PP_00978; phage(gi31415857)     7e-12               MSDKPSKANDIELELTIGDMFFAMKKQNETASTDPVFDTSVIRIPNIKKIAFKGNGKSNDIYASGKKFGT
953216..953581                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2593; PP_00979; phage(gi31415858)     9e-21               MAKLSDLVRLRDNHFITIQGAKVPAAFTFASIDAIESAYGQGYKTFEKDLNIMLKRKVIHRDQKTMKLIW
953662..953823                     hypothetical protein BN194_09650 [Lactobacillus casei W56] gi|409996630|ref|YP_006751031.1|;  PP_00980     1e-24               MGYSLQEFMKLTPNLWLKQYLIYIEINNPDGIYKEKPKPIRKQVTLDDIPFFN
953843..956815                     PHAGE_Lactob_c5_NC_019449: putative tape measure protein; PP_00981; phage(gi418488166)     5e-117              MADETQNVVLDFKMNGQVQFANTVKDINAVMNTAAKEYRAQISSMDENASSTQKLAAEQQKLQIQSEAAA
956822..957517                     PHAGE_Bacill_phBC6A52_NC_004821: Gp13 protein; PP_00982; phage(gi31415860)           6e-20               MVELILDGQSLAQSVPGTLVTKKPNIPAAQRDVKFTDVPGRLSGSLTEKRGWKDITWSPELQLVDFKTLN
957514..961920                     PHAGE_Bacill_phBC6A52_NC_004821: endopeptidase; PP_00983; phage(gi31415861)          3e-67               MSTDIELYPRDQTDFSHHGYALDDISNDIVTWQLNAKFTLTFDYPMFSEHAGDLVAENIVRVPVPGGKAA
961949..962374                     PHAGE_Lactob_LP65_NC_006565: hypothetical protein LP65_gp096; PP_00984; phage(gi56693144)     6e-10               MKITLENANIANVYRLVEQIKVKGRDALALAKFIKLLKQTLKSAGEDEQALVAQYALKDENGESKTDSNG
962377..962646                     PHAGE_Lactoc_bIL285_NC_002666: Orf59; PP_00985; phage(gi13095739)                    4e-13               MTLKTNKSISLTGTSTIGDVQVAYLNATIDQEGNGANTVNQSIQNQALYDANKKEVRADIAEFQQLLYDT
962692..962985                     PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein Lrm1_gp17; PP_00986; phage(gi195661217)     1e-42               VTFLGYTMADWAEFISIIGVGVSAGSWLFKKIALDPLRSDIQMLSETINRQLKLHEQSLADLNAHLKTHD
962975..963409                     PHAGE_Lactob_A2_NC_004112: holin; PP_00987; phage(gi22296539)                        2e-55               MKINWTVRVLSVKFWLAVVPASLLVVQTVAAVFGYNWDFASLGKELTAVVNAVFALLTIIGVAVDPTTEG
963409..963597                     hypothetical protein BN194_09740 [Lactobacillus casei W56] gi|409996639|ref|YP_006751040.1|;  PP_00988     3e-26               MEQLKAFATQVVLSLADKDETNESKKRRAVALLHEKAKSLGLDASEQDIDKAVEEAYTNEHS
963584..964558                     PHAGE_Lactob_A2_NC_004112: lysin; PP_00989; phage(gi22296540)                        2e-63               MSIHDWFDRHIGTITYSMYGSRNGADGTADCSGSVSQALKEAGYNISGLPSTVSLGSQLAANGFTRIHVW
964804..964817                     attR                                                                                 N/A                 TCCTGTTCGCGGCA

#### region 3 ####
1040654..1041541                   PHAGE_Coryne_BFK20_NC_009799: gp4; PP_01060; phage(gi157168377)                      6e-05               MTESLDLVIITGMSGAGKTVAMQAFEDLGYFCVDNMPPALLPKFWELVKESGKITKVALVVDLRSRAFYD
1041538..1042566                   hypothetical protein LBPG_00131 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|532356331|ref|YP_008446165.1|;  PP_01061     0.0                 MSRETKFIRVIRGRRPKVVVIGGGTGLPVILHSLHEQDADVTAIVTVADDGGSSGTIRNYINVVPPGDIR
1042571..1043518                   sporulation transcription regulator WhiA [Lactobacillus casei W56] gi|409996714|ref|YP_006751115.1|;  PP_01062     2e-175              MASFASLVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYSLIRQVYHHEA
1043904..1044359                   MarR family transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|532356333|ref|YP_008446167.1|;  PP_01063     2e-82               MVKPITLNEQLCFAIYKAQKQYNHFYSQALAPFKLTYPQYITLLSLYEHGTMSVKQVGQTLELDSGTLTP
1044476..1045066                   PHAGE_Strept_pyogenes_315_1_NC_004584: head maturation protease; PP_01064; phage(gi28876177)     6e-13               MLVPTVVEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYLYINSPGGVI
1045170..1045241                   tRNA                                                                                 N/A                 GCGCGGTTAGTGTAATGGATCGCACGTGAGATTCCGGTTCTCGAAATCCGGGTTCGACTCCCGGGCTGCGCA
1045226..1045248                   attL                                                                                 N/A                 ACTCCCGGGCTGCGCAGAAACCC
complement(1045471..1046622)       PHAGE_Lactob_PL_1_NC_022757: integrase; PP_01065; phage(gi557308015)                 0.0                 MAQISKTANGSWAFRASTGKDDIRRQVYKSGFKTRREATIAAAKIEEELDSGKIVSDPTFADYFDKWIEA
complement(1046733..1047494)       PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_01066; phage(gi557308016)      6e-139              MKKKQKRVKRPQGEINQRFDEQLSYLSYAADGYDTQDHSLIKMATAPLRTLFLKQNMGEPLIEQLKIDPE
1047513..1047743                   PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_01067; phage(gi557308017)      6e-38               VTVKNSNIKIVSDSNDVWDLPETKFFYSAFSDTPNIGADELAALLSGKALVDLSDGEYIHWIQLTPDAIK
complement(1047999..1048778)       PHAGE_Mycoba_Myrna_NC_011273: gp260; PP_01068; phage(gi203454821)                    8e-06               MATKKVNKVLIALHKYYTVLFAILALLSVALIVLDYMGRISIDKSPYTEIDNGILVIFAIDYFSRMLHAD
complement(1048850..1048978)       hypothetical protein BN194_10560 [Lactobacillus casei W56] gi|409996721|ref|YP_006751122.1|;  PP_01069     6e-18               LVPIYFEDVYPEDANIQEFLDSFHIPEKMRDWATDSIRKYYA
complement(1049251..1049505)       PHAGE_Entero_phiFL3A_NC_013648: CI phage repressor protein; PP_01070; phage(gi281416216)     7e-15               VGIGTNTLYSWKKKIPGGQNLSKVADFFHVSTDYLLGRTDDPSIADKPSKVDLADEDVIMTFEGQKIPPE
1049834..1050046                   hypothetical protein BN194_10580 [Lactobacillus casei W56] gi|409996723|ref|YP_006751124.1|;  PP_01071     8e-32               MSITQFERIKLQLDRNRRAGLKPGSQADLAEYLGVSKTYVHDILRGERLGQKGREYLEKALLYIGLKEAV
1050049..1050822                   PHAGE_Brocho_BL3_NC_015254: gp34; PP_01072; phage(gi327409426)                       4e-56               MNEPQPIEQNGQRVLTTEQLAELYGTTANVIKNNFANNKGKFISGKHYFLLEGQALKDFKDQVKDFDLVP
1051016..1051177                   hypothetical protein BN194_10600 [Lactobacillus casei W56] gi|409996725|ref|YP_006751126.1|;  PP_01073     3e-25               VNYVLIPKRDELERIGALLQWHDADHRDYLFKATTMSKWLDDNLDQITKGGWR
1051177..1051308                   hypothetical protein BN194_10610 [Lactobacillus casei W56] gi|409996726|ref|YP_006751127.1|;  PP_01074     3e-18               MAAIIETLVTPTVPFWRYLILIAIGVIIGHCLAGKGNWKTWIS
1051322..1051456                   hypothetical protein LC2W_1077 [Lactobacillus casei LC2W] gi|385819608|ref|YP_005855995.1|;  PP_01075     2e-15               VNISTNLDELEKLLSLATNQTKQLQETLKQISEYELVSKIESRE
complement(1051445..1051756)       PHAGE_Thermu_OH2_NC_021784: hypothetical protein; PP_01076; phage(gi526118358)       2e-11               LKLNGFDDLQKRLSSIQKNAESLAGKRNVSFDVLFPDSFMTAHTKSPNIQSFLADLKVTDQQSFKDLPQK
1051817..1052008                   PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein Lrm1_gp31; PP_01077; phage(gi195661231)     4e-10               MTSAEHTIGDLLNEHNRLTLDVIRGEHSPIAQTLLKHNAEWRKRVYDLFVKADPHELHDPFLI
1052022..1052261                   hypothetical protein BN194_10640 [Lactobacillus casei W56] gi|409996729|ref|YP_006751130.1|;  PP_01078     1e-35               VVLDYVIYVQAESIYKDLVSRRIAKASELALAAADNDSDAQGLGTEWLLLDELIKKIEEDEKKAADAATS
1052266..1052760                   PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; PP_01079; phage(gi78000004)      6e-30               MPPVYDLKSKYATLLAKAEDMEIDPIVLHDTLESIKDAIEDKAVGCVQVIKSLEADVDSIDQEIKRLQER
1052772..1053002                   hypothetical protein BN194_10660 [Lactobacillus casei W56] gi|409996731|ref|YP_006751132.1|;  PP_01080     2e-36               MSNRQPYQTHETASDKLIIQKQTRNKYFTMLNVTPETKEQIRQVSTETGVPMADVTTALVKFGIDHLVII
1053002..1054369                   PHAGE_Lactob_phiJB_NC_022775: type III restriction protein res subunit; PP_01081; phage(gi571797865)     4e-122              MTLRDYQQNTIDRIIRSMKSGHQSIIVQQPPRTGKTVIMAEIAKRTTDNGNHIMFMVHRKEIVDQVKRTF
1054446..1055111                   PHAGE_Lactob_phiJB_NC_022775: phage-associated ATPase; PP_01082; phage(gi571797866)     9e-55               MSGKSYLAERFPNPLFLNTDGNALANQAPSIQIRNIKSKQGLKQSAIKQLDEIILELENNNPGYETLVLD
1055114..1055623                   PHAGE_Lactob_phiJB_NC_022775: hypothetical protein; PP_01083; phage(gi571797867)     1e-18               MGLLENAKQALDGFDATKDKPTSYDLLPDGDYQVVLSNVDHFVTDGGYDGFRIQLEVLEGEHSGYKDSNM
1055690..1056487                   PHAGE_Lactob_phiJB_NC_022775: bifunctional DNA primase/polymerase; PP_01084; phage(gi571797868)     4e-61               MDNLINYAVAYAEKGFYVLPMHRKKPMIEFADRPAMTADEIKRFWTTHPQAQIALRTVHHFVVDIDQHDD
1056477..1057727                   PHAGE_Lactoc_bIL312_NC_002671: helicase; PP_01085; phage(gi13095906)                 2e-88               LLTDDMKKLQAMQSNVKPMPIAFSLNKDGYIRPNSIRNVVLALEHDPLMMKTFAYNEFTHEVDVIKAIPS
1058323..1058607                   PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; PP_01086; phage(gi399528947)     3e-13               MMKTHNTLDDLNNHLFSEMERLNDDTLEGESLEQELRRVDGISKIATQIIGNARTILSAQVAYQNNESAD
1058576..1058923                   hypothetical protein BN194_10730 [Lactobacillus casei W56] gi|409996738|ref|YP_006751139.1|;  PP_01087     5e-63               MGKHLTVYDTEYWRRNALFTLEEEHRAKQIIPGRTWTEATKQINFEFEMNLTSRQIRNWGHRHHVYAAEI
1058916..1059503                   PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein BC1875; PP_01088; phage(gi31415769)     5e-19               MSRLLDDKQLETYKNFVPGHTAAEIANMVHENWGIQLTVQKVHALNIRNNIKSGLYQKYFGKADPRRSSS
1059490..1059744                   hypothetical protein BN194_10750 [Lactobacillus casei W56] gi|409996740|ref|YP_006751141.1|;  PP_01089     6e-44               MNAARRYPTPNDPYVNDKGPWGVKVGEMFVKWAMWGSLFPKLEMKKVVLVSKPKPLNNHDQAIYIARAIG
1059900..1060145                   PHAGE_Staphy_TEM123_NC_017968: mobile-element-associated regulatory protein; PP_01090; phage(gi388570351)     1e-05               VLPIHLASDKRLWVLEQQKAAVERTIKKSPTLATGIVSELYFKDRPSLTVNGIALKFHVSVRSVQRLRRN
1060310..1060690                   PHAGE_Paenib_PG1_NC_021558: hypothetical protein; PP_01091; phage(gi514231252)       3e-22               MAMVPREISEPFYHSKEWKKTRAAYIASVGGLCERCLKRGIIKPGYIVHHKHYITADNINDPSITLNWDN
1060747..1061133                   PHAGE_Paenib_PG1_NC_021558: hypothetical protein; PP_01092; phage(gi514231254)       8e-06               LSLKMSIEKQDVAIQLEYERLRQTLSGISAEKLAAADNLIQRCAFMTITLQILEDEVKSKGPTILMHNGK
1061136..1062866                   PHAGE_Clostr_phiMMP04_NC_019422: terminase; PP_01093; phage(gi414090443)             3e-126              MADIQIKIRVDRHVSYPPDYDPITQYWQSFVQNGGDQVVGKKIYRTYKKLIADMHNDNSEWYYSNRRGNH
1062885..1064120                   PHAGE_Paenib_PG1_NC_021558: portal protein; PP_01094; phage(gi514231255)             1e-114              LAFWNNLFHRKNSGVTVTPEYKLVTNYGNGFFGWNGKVYESDIIRSAIEVKATTIGKAVAKHIRSGAGDS
1064098..1064805                   PHAGE_Paenib_PG1_NC_021558: peptidase S14 ClpP; PP_01095; phage(gi514231190)         1e-46               MTTVVPIKGDIVTNDYGWLYDLFGDDYASPKSVSDLINKANGDDLSVEINSGGGIVDAGSEIYTMLRAYK
1064810..1066039                   PHAGE_Clostr_phiMMP04_NC_019422: major capsid protein; PP_01096; phage(gi414090446)     2e-72               MNKEEYLKQREALMNDARTAIDKGKSEDANKAMKSVKDLDAKWDQQTKDQANLAALDDHAPITLAQVAPA
1066113..1066361                   hypothetical protein BN194_09590 [Lactobacillus casei W56] gi|409996624|ref|YP_006751025.1|;  PP_01097     1e-39               MADTPDRSAEFLKALQKGKVVAVGNKGTGEVDVTGLADGTVVKDGDYQVVFDTDNTKTLSSVASDPIDAP
1066375..1066701                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2588; PP_01098; phage(gi31415853)     3e-10               MADEKSEEEPTLLDLLKQHIRLEDDMDPSMLQFYLDAADKYVQRKVGHSVKYLQLMVATVMNDNRSAGDD
1066691..1066978                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2589; PP_01099; phage(gi31415854)     3e-06               LELKDGVDAHDRPKQTWEDKRVLYYADIGITSTEKYLAQQNKQDVVLRILIRRDMSITQGGNRVRIRGTD
1067136..1067291                   phage protein [Lactobacillus casei W56] gi|409996626|ref|YP_006751027.1|;  PP_01100     2e-22               LYTKGVEDELLPFIKIFDDVPFQSFRGIPGDENDETITDLYTYIEVIAGGQ
1067281..1067664                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2591; PP_01101; phage(gi31415856)     7e-11               VVNNNGFETMAKYLSGIKVDESVSKEGLVAAASQFADKLRPELPSEPNAPLAQTYGTLRDKLQVVDKGDH
1067676..1068323                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2592; PP_01102; phage(gi31415857)     7e-12               MSDKSSKANDIELELTIGDMFFAMKKQNETASTDPVFDTSVIRIPNIKKIAFKGNGKSNDIYASGKKFGT
1068556..1068765                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2593; PP_01103; phage(gi31415858)     5e-08               MLKRKVIHRDQKTMKLIWALVYGLLVGGGTETTFDEMNRAIPFSEIPSVIQEAMDILNEQNFQLSDIKK
1068846..1069007                   hypothetical protein BN194_10890 [Lactobacillus casei W56] gi|409996754|ref|YP_006751155.1|;  PP_01104     9e-25               MGYSLQEFMKLTPNLWLKQYLIYIEINNPDGIYKEKPNPIRKQVTLDDIPFFN
1069027..1072197                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2594; PP_01105; phage(gi31415859)     5e-119              MSDETQNVVLDFKMNGQVQFANTVKDINAVMNTAAKEYRAQISSMDDNASSTQKLAAEQQKLQIQSEAAA
1072204..1072899                   PHAGE_Bacill_phBC6A52_NC_004821: Gp13 protein; PP_01106; phage(gi31415860)           3e-21               MVELILDGQSLAQSVPGTLVTKKPNIPAAKRDVQFTDVPGRLSGSLTEKRGWKDITWLPELQLVDFKTLN
1072896..1077299                   PHAGE_Bacill_phBC6A52_NC_004821: endopeptidase; PP_01107; phage(gi31415861)          1e-66               MSTDIELYPRDQTDFSHHGYALDDISNDIVTWQLNAKFTLTFDYPMFSEHAGDLVAENIVRVPVPGGKAA
1077328..1077753                   PHAGE_Lactob_LP65_NC_006565: hypothetical protein LP65_gp096; PP_01108; phage(gi56693144)     6e-10               MKITLENANIANVYRLVEQIKVKGRDALALAKFIKLLKQTLKSAGEDEQALVAQYALKDENGESKTDSNG
1077756..1078025                   PHAGE_Lactoc_bIL285_NC_002666: Orf59; PP_01109; phage(gi13095739)                    1e-12               MTLKTNKSISLTGTSTIGDVQVAYLNATIDQEGNGANTVNQSIQNQALYDANKKEVRADIAKFQQLLYDT
complement(1078373..1078486)       hypothetical; PP_01110                                                               N/A                 MYGAELTIILVIAAVTAVTPSRQNQHEGCYDRIADPT
1078643..1079104                   PHAGE_Lactob_Lc_Nu_NC_007501: putative holin; PP_01111; phage(gi78000034)            3e-69               MNNLTELLVSLAVAAIPIIGAWISKQVLANKQALTLVKVLGPLANAAVTAAEHLGMTQAIDGAVKKSTAI
1079106..1080158                   PHAGE_Lactob_PL_1_NC_022757: lysin; PP_01112; phage(gi557308014)                     0.0                 MSYTINKEFALGANEGSSQVANRLYIILHDVGAESGARANAAYFKNNIAAEIAYTAFVVGDGGQVYQVGE
1080294..1080316                   attR                                                                                 N/A                 ACTCCCGGGCTGCGCAGAAACCC

#### region 4 ####
2011462..2011475                   attL                                                                                 N/A                 CAACGTAAACTTCG
2021459..2021788                   PHAGE_Salmon_Fels_1_NC_010391: putative transcriptional regulator (repressor); PP_02059; phage(gi169257171)     1e-05               VSLQEKIAHRIHDLRLSKSMTQEQLAEKANMDVSMLARIERGSRGDIRISTLERIVKGLDVSLQEFFTFG
2022165..2022809                   hypothetical protein BN194_20800 [Lactobacillus casei W56] gi|409997745|ref|YP_006752146.1|;  PP_02060     3e-120              MQKSFIAVWTLFLGLGLVGCGHQQQASPSSSSKKTSQQTSSRQASQSSSHSSKIASSSSDASHSTTKQPL
2023003..2023788                   PROPHAGE_Staphy_N315: transposase; PP_02061; phage(gi15927655)                       2e-27               MSQYDPTLSVLGIPDHNIKVAFVRHEYRGNGVRRRQYHVIDAELTYRLTRCPLCGFEALHPNGFYTAHVR
2023754..2024239                   PROPHAGE_Staphy_N315: transposase; PP_02062; phage(gi15927655)                       1e-07               VPSRVQALKQLDDKHSRPYKIMKTNWRLFHQTAPDAKHKQFLFGLNEYVTQQEAIDIALDTEPKFKQTYE
complement(2024359..2024955)       hypothetical protein BN194_20820 [Lactobacillus casei W56] gi|409997747|ref|YP_006752148.1|;  PP_02063     8e-108              MFWRREEIIRLNIRANQPSENATILRAGYLLLYSSWEGFIRSIANLYVVFVFSRDISLHDLRDGFQAVYF
complement(2024984..2025274)       hypothetical protein BN194_20830 [Lactobacillus casei W56] gi|409997748|ref|YP_006752149.1|;  PP_02064     8e-47               MKFKEASLILASLFGENAFQKWGESKQKYYGPCLRSIFEVLFPLVANNLELLVSIQKEISNRKEYKEATK
complement(2025306..2025611)       PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; PP_02065; phage(gi588498272)     2e-18               MGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTD
2026021..2026491                   PROPHAGE_Xantho_33913: IS1480 transposase; PP_02066; phage(gi21231089)               6e-48               VIVDAQSVKTTDLTKNSGYDGGKKISGIKRHMAVDINGLPQAILVTRANVSDRSGALAMFSLASQNLELV
complement(2026478..2027086)       PHAGE_Spirop_1_R8A2B_NC_001365: putative transposase; PP_02067; phage(gi9626114)     1e-06               LGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYDPELAQQDADRKRRNCGRRSM
complement(2027189..2027710)       hypothetical protein BN194_20880 [Lactobacillus casei W56] gi|409997753|ref|YP_006752154.1|;  PP_02068     2e-91               MGNIIDDVMGHITPIDKKEVDEFKLLVSEEAFLTENRDKITFSEGFPPELAGAISGLGAGAVGVGVVFAV
2027883..2028164                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; PP_02069; phage(gi24373865)          5e-08               MTYSRNRYDQDFKKNAVXLSFNSSKPVKIIASELGVPESALYRWRKLYTEDGKQXPFASLEAENRALKRE
2028230..2029000                   PHAGE_Lactob_phiAT3_NC_005893: putative transposase B; PP_02070; phage(gi48697274)     2e-26               LLDVSTSGYYAWRRALPKRNTKEXQYRQRIKHFFDQGQGTYGPKRICGLLRKNGNKASYHRVARLMADXG
2029036..2029335                   transposase [Lactobacillus casei W56] gi|409997756|ref|YP_006752157.1|;  PP_02071     1e-55               MQHFSHHYQSDISRQQFDLIRQDLEASRKRTHPKHIDPYDIFCAMLYVLKNGCTWRDLPADYPKWSTVYY
2029569..2029790                   transposase [Lactobacillus casei W56] gi|409997757|ref|YP_006752158.1|;  PP_02072     7e-33               LVRTMMVDSGYTGQNFANEISSLTSAKVIVVKEMSYTNFRLSPNGGSLNVHLVGWEIIIVYGVTVSVSST
2029854..2030102                   hypothetical protein BN194_20930 [Lactobacillus casei W56] gi|409997758|ref|YP_006752159.1|;  PP_02073     4e-39               LIFAIYYHGNEAKIEGLLTASQVFLSIALPFAIIPLVMFTSNKKLMGEFANHTWVKYAAWFATIVLVTLN
2030259..2031167                   PHAGE_Lactob_Lb338_1_NC_012530: Mg2+/Co2+ transport protein CorA; PP_02074; phage(gi226377699)     9e-05               MIKPEKTINGTKWIETIQINAEERATLEDQYGIDEDIIEYVTDNDESTNYVYDINEDDQLFIFLAPYALD
2031559..2031696                   hypothetical; PP_02075                                                               N/A                 LSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRVPLG
complement(2032592..2033488)       Proline iminopeptidase [Lactobacillus casei W56] gi|409997761|ref|YP_006752162.1|;  PP_02076     2e-175              MVIATTKILTLANGYHLWSQKQGKGTTQLLCLHGGPGSDHEIFEEFGNHLADQDISVYMYDQLGSWYSDM
complement(2033492..2034349)       D-aminopeptidase DppA [Lactobacillus casei W56] gi|409997762|ref|YP_006752163.1|;  PP_02077     4e-162              VLKIYISTDIEGLAGIVDFSQEDEDREIFRDLYNQQIEWVLQGIQQSNRNDEVTDILIADSHAKGLNLSY
complement(2034349..2035479)       aminopeptidase ysdC [Lactobacillus casei W56] gi|409997763|ref|YP_006752164.1|;  PP_02078     0.0                 MSIGNSWHRLKGNQKLEDTKQIQLIKDFSDAHGVPGQEQEVVALYKDRMKGLGTTTIDGMFNALTALNGN
complement(2035463..2037082)       Lipoprotein, peptide binding protein OppA-like protein [Lactobacillus casei LC2W] gi|385820630|ref|YP_005857017.1|;  PP_02079     0.0                 MIKKTKLPGLVTVMCSATLLLAACGKQSAPETHDSINIGESAALSTADNSQAMDNTSSDVMEQVGEGLYD
complement(2037354..2038037)       PROPHAGE_Brucel_1330: transposase, putative; PP_02080; phage(gi23502708)             2e-44               MNHFKGRHFQKDIILVAVGYYFRFSLSYRDIVELLRDRGITVHHTTVMRWVHHYGPIFKALWRRHQTAHA
2038097..2038297                   restriction modification system DNA specificity domain-containing protein [Lactobacillus casei W56] gi|409997766|ref|YP_006752167.1|;  PP_02081     2e-30               LHQNRLKVFGINYDKVQKYFSIFPDEKEQKYIEQLLFLTDHLIAANQRKLEKLXELKKGYLQKMFC
2039002..2039118                   hypothetical protein LCABL_21490 [Lactobacillus casei BL23] gi|191638908|ref|YP_001988074.1|;  PP_02082     2e-14               MDKCILELINTVEIDKLGLDKGHFITDEKFTEQLTANY
2039121..2039324                   hypothetical protein LC2W_2104 [Lactobacillus casei LC2W] gi|385820633|ref|YP_005857020.1|;  PP_02083     5e-30               VFYLPLLVAIIHVGVALPFVQRLLRVFGLTNWYFFLNVSLITLAILALVYVLVYKLTRNIYYRVVSE
complement(2039384..2039503)       hypothetical protein LC2W_2105 [Lactobacillus casei LC2W] gi|385820634|ref|YP_005857021.1|;  PP_02084     8e-15               MKAISKYFFDELPELPDGELLHEKNRPVAVNAYRSILNQ
2039567..2039965                   hypothetical protein BN194_21030 [Lactobacillus casei W56] gi|409997768|ref|YP_006752169.1|;  PP_02085     8e-69               MSSEQEVTRMFICYVQQALKNERINRYKASLRQIKEIPLEAWILEEIEDSYHLDEFRLTDEEIEHLEDFI
2039986..2040237                   hypothetical protein BN194_21040 [Lactobacillus casei W56] gi|409997769|ref|YP_006752170.1|;  PP_02086     9e-41               MHYSEIDNLVPVILAVQEDDNNAITLLLELFGRVIDYEARYGHRHIDPDLRQELQIKLIYIAKCFDVEKH
2040593..2040841                   hypothetical protein BN194_21050 [Lactobacillus casei W56] gi|409997770|ref|YP_006752171.1|;  PP_02087     4e-38               MVHVITMTKHELVALGYGASRAQDIIRRAKLLMVRKGVPYYKSPKLGRVPVTAVEEILGLQISTRTLAEL
2040845..2042038                   PHAGE_Bacill_phIS3501_NC_019502: phage integrase; PP_02088; phage(gi422934298)       3e-44               MATTKDPIKTRKNGTFYFRAYLGVDPKTGEKIQKQVGGFTTRRDARKAYKEMVGGSVEKVVAERDQQHIQ
2048515..2048528                   attR                                                                                 N/A                 CAACGTAAACTTCG

#### region 5 ####
2995050..2995062                   attL                                                                                 N/A                 CCGTGGTTTTCTC
complement(2995077..2995946)       PROPHAGE_Oceano_HTE831: integrase; PP_03035; phage(gi23097608)                       7e-38               MFNNHILPAFGGKRIATITTKDVQKAVKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMDKNPAKAVVLPH
complement(2995976..2996233)       PHAGE_Thermu_OH2_NC_021784: integrase; PP_03036; phage(gi526118367)                  4e-11               MASIKKYATKDGKEFWRVQVFAGNDPQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEKEKPKPVF
complement(2996346..2996984)       PHAGE_Lactob_phiadh_NC_000896: hypothetical protein phiadhp25; PP_03037; phage(gi9633025)     4e-10               MTNNRIKAAREAAHLSQGDLAAQLKVTRQTISAYERGLREPRMDVWKSLSDALSVSIPYLQGISSDPIAI
2997230..2997427                   hypothetical protein BN194_30180 [Lactobacillus casei W56] gi|409998683|ref|YP_006753084.1|;  PP_03038     1e-28               MPQQQTIQPQIPEFLNLGEACKLLSVSRGTLDKLIKRGEIKVTHVNTAKRISKKQLIEFMASREV
2997495..2997716                   hypothetical protein BN194_30190 [Lactobacillus casei W56] gi|409998684|ref|YP_006753085.1|;  PP_03039     6e-34               MNLFSKDEIALDHELGNLIDDIQLNVHGIAEDSTVTVDGKYIPNSELAVTTAKELLRVSEILKLYENEDY
2997709..2997846                   hypothetical protein BN194_30200 [Lactobacillus casei W56] gi|409998685|ref|YP_006753086.1|;  PP_03040     2e-19               MTSLITWIFIHPTVIPVMLMVFMNGGVLGAFLQFREDYDHGKNDK
2997821..2998018                   hypothetical protein LCBD_3103 [Lactobacillus casei BD-II] gi|385824791|ref|YP_005861133.1|;  PP_03041     3e-31               MTMAKMINSKYGWTWSQFVKADADCDRYWAAKKAEKRSLIEATKKSPRVAPQGEKKTSEKIQINF
2998065..2998355                   hypothetical protein BN194_30220 [Lactobacillus casei W56] gi|409998687|ref|YP_006753088.1|;  PP_03042     2e-50               MKNVSTTVNKPLDLCDSLYDLRKAKGALSALCDELDEFGISVCHFDKNHSHDNAKLVALEALRDFDTWEC
2998352..2998540                   hypothetical protein LC2W_3089 [Lactobacillus casei LC2W] gi|385821611|ref|YP_005857998.1|;  PP_03043     2e-26               MMKEDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLLEGDAADGRRA
2998524..2999336                   PHAGE_Lactoc_bIL310_NC_002669: hypothetical protein bIL310p24; PP_03044; phage(gi13095885)     6e-25               MVDVLKVALGYQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGLDGVLVFDID
2999349..3000935                   PHAGE_Entero_EFRM31_NC_015270: DNA primase; PP_03045; phage(gi327198106)             8e-34               MDSLKEELNKSPEFTQLKVVSKSTLEPFDVNKYPDPPDKTEKGIRAYNKELAKKLPSWLKVWFQSEQKDE
3001261..3001596                   PHAGE_Lactob_phiAT3_NC_005893: putative head-tail joining protein; PP_03046; phage(gi48697266)     7e-18               MKNYSIARLNKVAEIGKTVSRRTGAGINISTFTPTGTLFYGSYNRTMTQTYQITGTDLADTIAIVIRHTD
3001601..3001786                   hypothetical protein BN194_30270 [Lactobacillus casei W56] gi|409998692|ref|YP_006753093.1|;  PP_03047     6e-29               MKLFEYTAYQGELNGIIDKFMMLHRWQVGFIRVFSAPDNMITVQLYYRDDKPEPEKAGVLA
3001783..3002205                   PHAGE_Staphy_JS01_NC_021773: endonuclease; PP_03048; phage(gi526003569)              8e-23               MIMKLCNHAGCNTMVPFNQRYCDKHQPEPRASDNERYAYRKAIGGRYFKFYKSKAWRKLSYSYRLAHPLC
3002322..3002792                   PHAGE_Staphy_JS01_NC_021773: putative terminase small subunit; PP_03049; phage(gi526003597)     4e-17               MGAPLKSITQMRGAMSKKKLADRRDMEESLFTYQELVDQPPTWLDEYAVTEWQRIVPLLKKDIPVSELDA
3002789..3004492                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; PP_03050; phage(gi418489385)     1e-116              MNYATEYTDKVLSGEIVACKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPARDGSPL
3004458..3004637                   hypothetical protein BN194_30310 [Lactobacillus casei W56] gi|409998696|ref|YP_006753097.1|;  PP_03051     6e-26               MTFIRAMTLVFNVQTVLLMLGLICMVVGIWWLFGFGVGMLAVGTALISVAVIINFNKGR
3004642..3005823                   PHAGE_Staphy_StB20_NC_019915: portal HK97 family; PP_03052; phage(gi431809767)       3e-60               MSFFTNDTTQPRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIASDLATNPIEYSDKRISV
3005810..3007366                   PHAGE_Entero_EFRM31_NC_015270: major capsid protein; PP_03053; phage(gi327198115)     4e-44               MNQDDVEKRLNPDADLTAADPTTATDSQGQDDPDTQQQEDTTSSPKKLSGYAVVFNSPSKDLGGFKEVVD
3007421..3007714                   PHAGE_Entero_EFRM31_NC_015270: head-tail joining protein; PP_03054; phage(gi327198117)     1e-08               MTVTTNDIKNSLRVQTNTDDSLISNYLTAAQDYVHNAVDSTAAIDELQAYSQFDIAVAMLTEFWYQNRGA
3008703..3008715                   attR                                                                                 N/A                 CCGTGGTTTTCTC
