gi|506971042|ref|CM001861.1| Lactobacillus casei LcA chromosome, whole genome shotgun sequence. [asmbl_id: NC_000000].3068655, gc%: 46.31%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
555776..556705                     PHAGE_Lactoc_P087_NC_012663: putative cysteine synthase; PP_00556; phage(gi229605000)     1e-89               MVTAADNITGLIGNTPLLKLNRVVPEDAADVYVKLEFFNPGGSVKDRIALAMIEDAEYKGVLKPGGTIVE
complement(556899..557291)         Hydrophobic protein [Lactobacillus casei W56] gi|409996218|ref|YP_006750619.1|;  PP_00557     2e-71               LALGVTILIGAILGWFQTTGLKVHVSQKHDVNGLPIIEIRHGWQYLVGWIVIFIYGLGFALLSGWHVDVL
557529..557540                     attL                                                                                 N/A                 GCAAATTATTCG
557566..557637                     tRNA                                                                                 N/A                 GTCTCCATGGTGCAACGGATAGCATAATGGTCCTCGAAACCACAGATCCGGGTTCGAATCCCGGTGGAGGCA
complement(557765..558934)         PHAGE_Lactob_phiAT3_NC_005893: putative integrase; PP_00558; phage(gi48697280)       0.0                 MATFRKRGKYWEYRVKYTDSAGKQLVASHGGYRLKSSAQDAAEAVEDDLKRGGDPSKQDVLLLDYWDQWA
complement(559047..559307)         PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF33; PP_00559; phage(gi48697293)     3e-10               MKPITVISYKFGEKTWKNFEGEPIKKYEHSVLLDISDTEVFTDKEKTELNDKIVVPFSRIREKRFIKDIP
559397..560017                     hypothetical protein BN194_05560 [Lactobacillus casei W56] gi|409996221|ref|YP_006750622.1|;  PP_00560     8e-115              MEMQQLILAGIPGFLTFIWLDKLDAIHFDLPARQADRTIALILISMLNAAGGLAIYQQIWGTVGRSFWSE
complement(560001..560237)         hypothetical protein BN194_05570 [Lactobacillus casei W56] gi|409996222|ref|YP_006750623.1|;  PP_00561     1e-37               VLAGYKKTPAAVVEEQLDYVEEKKLQKDNSDKAKSLPDKKSGLFFDRNVQNRSIKLVHKDPVPHKPKMPD
complement(560430..561137)         PHAGE_Lister_A118_NC_003216: gp34; PP_00562; phage(gi16798817)                       6e-07               MNLLPEDQVDAGQAYDGLGNSEIIDTAFENKIWQLSKFAALNQPVSVDIDGKVYAEIRQTKYFIGKIPND
complement(561296..561616)         PHAGE_Lactob_prophage_Lj928_NC_005354: hypothetical protein Ljo_1458; PP_00563; phage(gi41179295)     2e-11               LVDTEARLIILNNKWPNANELPFQAAHECAHILNGDNGKLRYTNQYTKSRTENGANQRALSIIVPMYFAD
complement(561711..561953)         PHAGE_Lactob_johnsonii_prophage_Lj771_NC_010179: cl repressor; PP_00564; phage(gi163932156)     4e-08               MTPSTENVQKVADVLQVSVDYLLGNTDNPNPDNEGSKPVDLSGTNIFTYQGQPVRQDDWEIIQAILERRN
562308..562556                     hypothetical protein BN194_05610 [Lactobacillus casei W56] gi|409996226|ref|YP_006750627.1|;  PP_00565     9e-41               MVNVQLNWTANRNDWKGYLLHLNLSQLDIAKFLGISDQVMAILVKKMTDGQGLTANQIDKDRWKRAIEYV
562598..562798                     hypothetical protein BN194_05620 [Lactobacillus casei W56] gi|409996227|ref|YP_006750628.1|;  PP_00566     5e-28               MIKPIDAIRNELPVVTSKTLDLFESAVSQELQKRNPKATFQVSILGMAVLGLLVATRLEEVSDINN
complement(562769..563602)         hypothetical protein BN194_05630 [Lactobacillus casei W56] gi|409996228|ref|YP_006750629.1|;  PP_00567     5e-157              MSKPIDAVAVENISKILGEYTTGPKITKMFSLLGFFDYDLQRQTDNQWFKASTKWRRLDETIRHECNASH
563681..564421                     PHAGE_Lactoc_bIL285_NC_002666: anti-repressor; PP_00568; phage(gi13095686)           8e-42               LNEPQPIEQNGQRVLTTEQLAELYGTTVGVVQMNFKRNSNKFIEGKHFFKLEGEQLRAFKNEPTNCGFVG
564422..564601                     hypothetical protein BN194_05650 [Lactobacillus casei W56] gi|409996230|ref|YP_006750631.1|;  PP_00569     8e-26               MNERPKEKLTNVVKVQDKDVEDQVTGMVIDLLKQKGFTFANFESVVARVKSHYQNNATI
complement(564594..564845)         hypothetical protein BN194_05660 [Lactobacillus casei W56] gi|409996231|ref|YP_006750632.1|;  PP_00570     2e-44               MVQVPYYDNPGGALAVTVELPHAANVYLVDQANFNAHQRGDHFTYFGGHYDESPVTIRVSGAGRWYLIAE
564911..565267                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF25; PP_00571; phage(gi48697285)     2e-63               MPLLQVVEDDQISSKKYLAVEEEELAKMIEENQELKRKLAARGMWTLTTATSYVEGHNNTWVVNNILNVP
565352..565555                     hypothetical protein BN194_05680 [Lactobacillus casei W56] gi|409996233|ref|YP_006750634.1|;  PP_00572     3e-29               LNSPETKLNKKYSPIFGDGISVSANDVQMAVDGIVATLSRHTSNLAEAKAILDLIDLDQYAELKLIK
complement(565538..566083)         hypothetical protein BN194_05690 [Lactobacillus casei W56] gi|409996234|ref|YP_006750635.1|;  PP_00573     5e-94               MNKYELFSSVVQALTSIVAVVLSTIALIRSSKSERDANKPYIVSFLKVVRSSQTTIIYLMIKNFGRTGAT
complement(566145..566312)         hypothetical protein LC2W_0566 [Lactobacillus casei LC2W] gi|385819097|ref|YP_005855484.1|;  PP_00574     1e-26               MQVIQDGQVACQFLWPLFYLISFCDIMRSINVKPHFWPLSVLALSGFCFANYFVD
566402..566578                     hypothetical protein BN194_05700 [Lactobacillus casei W56] gi|409996235|ref|YP_006750636.1|;  PP_00575     6e-27               MTDGEKIQDRLFLKDNFKKYMDILGQTSLDMIKFEADLMDVRQNIADQCFHEGGVDHE
566571..567317                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_00576; phage(gi557308027)      2e-30               MNEKPGYYAIIPAGVRYDKQLPQGAKLLYGEITALTNKNGYCWASNDYFAKLYSVSIGTIKSWLKCLEDN
567332..568156                     PHAGE_Lactoc_r1t_NC_004302: putative replication protein DnaC; PP_00577; phage(gi23455731)     5e-15               MSNLETNQGRLAAIETFAERCPDCGSLLYRPKGLSKVTGKKMAGVCMNCGYKQPPTEPKNVTPDMEKEAR
568156..568674                     DNA polymerase III subunit epsilon-like 3'-5' exonuclease [Lactobacillus casei W56] gi|409996238|ref|YP_006750639.1|;  PP_00578     1e-95               MKEYVIMDTEFNSTSNRAIQISAVRIRDGLHIADQFNRFIPSPDKFDQLHIIRTSNMRYSDYLALPSLQQ
568721..569143                     PHAGE_Strept_phiNJ2_NC_019418: hypothetical protein; PP_00579; phage(gi414090240)     4e-18               MDKLNLNLNELADGAIKEKLTKALAQVANNILDPNTDQSKARKVTIALNFKPDDSGVVKLTTDVKTTLVP
569145..569882                     PHAGE_Clostr_phiCD38_2_NC_015568: hypothetical protein; PP_00580; phage(gi333798150)     4e-39               MTTEADALKFTAEQAVTANGKRIIETKNRQFLINGNGDIREFRPNDGANEALQVHTLTAVVDYIGKVSER
570251..570583                     hypothetical protein BN194_05770 [Lactobacillus casei W56] gi|409996242|ref|YP_006750643.1|;  PP_00581     6e-56               MNSLLIKLLICAVITVVICAYFFWLLFDHFVSNRRSKTVQIGSTVFIVRIGKKQYVSYFSKCSKEFNTSS
571098..571541                     PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein Lrm1_gp49; PP_00582; phage(gi195661249)     3e-57               VVRATRYFSPIDHDKTIENAKEVLGNYWHHKRLAQRTKIALRSPVMDGMPKSPSYGNKAEDKLVSHADEL
572055..572708                     hypothetical protein BN194_05790 [Lactobacillus casei W56] gi|409996244|ref|YP_006750645.1|;  PP_00583     2e-120              MSFISGFLTKDFCSIVADGRMSQGAKTVGENYKKFMLAESNILIATTGNAQVADIIKDFIKRLHVQSNGA
572959..573957                     PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; PP_00584; phage(gi588498272)     1e-57               MSPYIHLTLKDRESILLGISTGKTLDTIAKEIGRSKSTVSREIARNGGWRSYSAATAQDRYRRVRLASRR
573954..574097                     hypothetical; PP_00585                                                               N/A                 LTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSQQKTSSYPG
complement(574253..574471)         PHAGE_Lactob_LF1_NC_019486: hypothetical protein; PP_00586; phage(gi418489439)       3e-20               MSLDGKVDSTKDKISGKAKEVEGKVTGDKARETQGKAEGILGKAKEKLDDAKDAVKDTVDDVKSKLSTDK
574894..575724                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF50; PP_00587; phage(gi48697310)     1e-100              MQWTDEQIGDIRKLASEGFTRRETADKLGISYDALQGKARRLGIEFQKPLKNEYDSDGTNRETPSADRKV
575718..576017                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF50; PP_00588; phage(gi48697310)     2e-54               LLGHVGIMLAHGDVAKNKLTGLFPFEYKKIFNMAKTYELHSGHYHSERFKDDRGIMWRQLGTAKPNDPYE
576100..576339                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF52; PP_00589; phage(gi48697312)     2e-32               MQAIIYTKPHCQKCRRTVFKLSRVMPVQTITADADDYERFRKLGYRSMPVVTIYEADGTHDEWCDLRVDK
576480..576791                     PHAGE_Lactob_phiAT3_NC_005893: putative transposase A; PP_00590; phage(gi48697273)     7e-08               MTNTAIRYTPEFKQTLIDLHEKGHSFKELHEEYGPSLDTIRKWVQAATVIAIDHQGTAVTNEQFKQLQKE
576821..577549                     PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; PP_00591; phage(gi17546156)     9e-07               MGRKGSRYTLEEKLFYIGLVREGGWAPWAVQREYGVRHNQVRQWLERFEATGVDGLKPRSVHQKYAEEFK
577594..578424                     PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfB; PP_00592; phage(gi24373866)          2e-23               MMGVSRAAYYKWTHRKVTVHEQENQAIRDYIIELEEKNHYVFGVKRLMTYINAETQYHVSHGRVRRIMRL
578470..579333                     PHAGE_Lactob_phiAT3_NC_005893: putative transposase B; PP_00593; phage(gi48697274)     5e-28               LIHSGRKAALFMIQDQLSRGHRITVILRALRIPSSTYYDWLKWHPKSRNRRRIKLKELVQVLWQRRKFYG
579648..579806                     hypothetical protein BN194_05900 [Lactobacillus casei W56] gi|409996255|ref|YP_006750656.1|;  PP_00594     5e-23               MLWLIFKCSFWVLLGFIFLCELAAIRISGLCSREEERQEALEKHRQQAKSAP
580063..580341                     hypothetical protein BN194_05910 [Lactobacillus casei W56] gi|409996256|ref|YP_006750657.1|;  PP_00595     9e-46               MAESVGIWLHDRNLKLISKDRDALSYRIQASWVKDHTDYPIKPGMTVVIGNIKPPNQLKNVLVLKVGSAE
580353..580619                     hypothetical protein BN194_05920 [Lactobacillus casei W56] gi|409996257|ref|YP_006750658.1|;  PP_00596     4e-44               MFNLVLQTKDIKEAKRKNGLLEIRFPHPKEKALMLKLRHAVLSIETGWPILPDTTCIGEIVRVLPSKDRV
580638..580814                     hypothetical protein BN194_05930 [Lactobacillus casei W56] gi|409996258|ref|YP_006750659.1|;  PP_00597     1e-25               MAISKAQMNNQKQMLTEILKQQNLAYEDWLYQRMTDEIESHRKLILQALKNLNMKEGH
580816..581043                     hypothetical protein BN194_05940 [Lactobacillus casei W56] gi|409996259|ref|YP_006750660.1|;  PP_00598     2e-33               MQGKVIALLSAILGFIIAIAGGYAAVKFGLMGIAHMTKDQQKIREARDGMTNVAIGLIVVIFASAAVAWL
581086..582327                     hypothetical protein BN194_05950 [Lactobacillus casei W56] gi|409996260|ref|YP_006750661.1|;  PP_00599     0.0                 VYAKFECSRKLRQFLKKKRQLSLSEAEKMISAADDYAIQNHFKEDVNFKIVSQDGIEYEDNLPIGTGQGW
582305..583855                     PHAGE_Achole_L2_NC_001447: envelope protein; PP_00600; phage(gi9626524)              1e-11               MKNQQTNNKKRHIIITTTAVALLGAGGLWAATQAHSDQQATHTSSYQTKMQKPKASKGSQAKKEKGKNTV
587440..587451                     attR                                                                                 N/A                 GCAAATTATTCG

#### region 2 ####
917322..917335                     attL                                                                                 N/A                 TCCTGTTCGCGGCA
complement(917458..918597)         PHAGE_Lactob_Lrm1_NC_011104: integrase; PP_00931; phage(gi195661224)                 9e-82               MATISITQENTGKWRYRVYYYDNQGIRHAKSKRGYARQAAAKRDAQILASELEQGANMLDREVGFVNYFE
complement(918715..919782)         Abi family protein [Lactobacillus casei W56] gi|409996593|ref|YP_006750994.1|;  PP_00932     0.0                 LKADKPFKTYGEQIAKLSDHNIIVPNGQEAYVKSMLMQYGYYNLVNAYQDKLEHTDDEKFCPERPFNLFS
complement(919927..920358)         hypothetical protein BN194_09290 [Lactobacillus casei W56] gi|409996594|ref|YP_006750995.1|;  PP_00933     7e-75               MTMEVNGKVVRIISKSEVIIDIGRDAHVEVGDKVEIIVVGDKITDDNGRSLGYFTFQKDSLEVTHTEPSF
complement(920428..920910)         hypothetical protein BN194_09300 [Lactobacillus casei W56] gi|409996595|ref|YP_006750996.1|;  PP_00934     5e-86               MSIKIVVLKFDAYDGELVPFDPFSTDPLPVEYFQVRLFVRAPYYSETFDDQTLLVRRYMRRFKEIKNRFI
complement(920914..921207)         hypothetical protein BN194_09310 [Lactobacillus casei W56] gi|409996596|ref|YP_006750997.1|;  PP_00935     1e-48               MNNLLIQHQLEDSRPIRTYKAKIVIKLLEDNQTLPRNERTSQVQVLREASQKTDELVQKVMATSKHDRTA
complement(921391..922251)         hypothetical protein BN194_09320 [Lactobacillus casei W56] gi|409996597|ref|YP_006750998.1|;  PP_00936     3e-160              MEKVNYKDADFLAHRIEVFVRNHFDNAIEYNAVPFILAEIQKLPDDFFQFPLSDGILGTTIVDSAVTVTI
complement(922238..922606)         PHAGE_Oenoco_phiS13_NC_023560: Phage transcription regulator, Cro/C1 family; PP_00937; phage(gi589286224)     8e-06               MSALYDRIYSLASTRGMSIPEVAKKAGLSSAIIYRWRTNDANPTKPSLIAVATALGVSEDELVGKKEVDP
922862..923059                     hypothetical protein LBPG_00023 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|532356226|ref|YP_008446060.1|;  PP_00938     1e-28               MSTMLKRFKKQLIDLDLTQAEVARKFGWSSQYVRDLMGGMAFGPAAERNRAAVIAFLAKVKEESK
923056..923778                     PHAGE_Lactob_phiadh_NC_000896: hypothetical protein phiadhp07; PP_00939; phage(gi9633007)     5e-38               MNGLVIMHEQQAVTTSLKVAEVFGKEHKVVLRAIEDKIQSAQNYADYKKMFEASTYTDSRGREQKVYFMN
923786..923998                     hypothetical protein BN194_09360 [Lactobacillus casei W56] gi|409996601|ref|YP_006751002.1|;  PP_00940     7e-30               LESQKVIRKELPVVACQTIDLLEAAVSRELQKKTPHATLRVGLLGIVALGLIAITRVDEFSSFEAQKLER
924158..924331                     PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF25; PP_00941; phage(gi48697285)     5e-05               MRWLKKNILEKPEFMEILRYRMVMYAGDGGKDWTFEPVKFSEFMRNYFPEIAKGIGE
924420..924632                     hypothetical protein BN194_09380 [Lactobacillus casei W56] gi|409996603|ref|YP_006751004.1|;  PP_00942     1e-36               MSLHQWDNINDLHHAEKSGWGEESKFEELEDYQGNALHPGHTYWLYQGELFDEDEALEFLDSLGATQVIN
924642..925517                     PHAGE_Entero_phiFL1A_NC_013646: endonuclease YqaJ superfamily; PP_00943; phage(gi281416339)     3e-62               MKPKYISTAKLNHAEWLDFRRQGIGGSDVAAILGMSPWRSPYSVWAEKTGRLPINDSGNEFTHWGTIMEP
925520..925714                     hypothetical protein BN194_09400 [Lactobacillus casei W56] gi|409996605|ref|YP_006751006.1|;  PP_00944     8e-31               MDYYNVAYDLYSNHGHLSGEADHVYVPDGTFGAVTIDDKDGSSLIVMSSEIQHLRITPIKEDED
925714..926601                     PHAGE_Lister_A006_NC_009815: gp42; PP_00945; phage(gi157325459)                      1e-61               MATTSLQKQLNEVSQAKGKSSAGSVVKDLLSAPAMQKRFNEVLGKSAQQFTSSIINVVNSSQQLQGVDAM
926860..927705                     PHAGE_Lister_A118_NC_003216: gp49; PP_00946; phage(gi16798836)                       1e-48               MADGGWIKLYRSIRSNWIWANGNERYAKWWMDLIMMVNHEPRKVLVNGNLITIGVGQRLTSIKKLSETWG
927743..928564                     PHAGE_Lactoc_P335_sensu_lato_NC_004746: putative DnaC protein; PP_00947; phage(gi30089873)     4e-18               MNGLQISPSIWAALETFGELCPDCGKPLYRPKPLSRVTGKKMAGACMYCGYKQPPTEPKKQKPDLERKAR
928561..928860                     hypothetical protein BN194_09460 [Lactobacillus casei W56] gi|409996611|ref|YP_006751012.1|;  PP_00948     2e-50               MSDLRITKRDEKDQSSDWMTLVHEEDDQVLIDLLSIAKSKIAYAGIYLDREEVKTLANWLDEFLYSTREN
928823..929107                     PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; PP_00949; phage(gi399528947)     1e-13               MMKTHNTLDDLNNHLFSEMERLNDDTLEGESLEQELRRADGISKIATQIIGNARTILSAQVAYQNNESAD
complement(929232..929360)         hypothetical; PP_00950                                                               N/A                 LIDFKKLIPMFSNWINLEIWLAIIDYFSSINMVPMTPVSNLS
929416..929994                     PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein BC1875; PP_00951; phage(gi31415769)     4e-19               MSRLLDDKQLKAYKKFVPGHTGAEIAKMVYENWGIQLTVQKVHALNIRNNIKSGLYQKYFGKADPRRSSS
930008..930430                     PHAGE_Lactob_Lc_Nu_NC_007501: putative Holliday junction resolvase; PP_00952; phage(gi78000012)     7e-43               MMIQINIPGEPVPQGRPRFASRGKFVSTYDPPKSKAYKNEVAVAARDQYAGEPLSGPLICRVTIYRPIQQ
930435..930698                     hypothetical protein BN194_09500 [Lactobacillus casei W56] gi|409996615|ref|YP_006751016.1|;  PP_00953     1e-41               MTELKDNSITVFGNVINSTEKTVNKDQVVELKVRIQAKELDGKRDSFAKVLKGNAQMVFTPSQTELDVDG
930722..931045                     hypothetical protein BN194_09510 [Lactobacillus casei W56] gi|409996616|ref|YP_006751017.1|;  PP_00954     3e-56               MNNMAKTLRREDQRAFDTWFNRWIKNTRLEQSLIEAARKGYKSLIVYDRKNDMDVYQKRRFEDSRFVKRL
931124..931573                     PHAGE_Bacill_WBeta_NC_007734: conserved phage protein; PP_00955; phage(gi85701424)     2e-23               LSREHKSRFEWLQDYLELDDEIRYLEWKIRKSNAEVDRWSEGDLSRLHVSGSDSRAAHVGEEVPELQTKL
931795..932178                     PHAGE_Paenib_PG1_NC_021558: hypothetical protein; PP_00956; phage(gi514231252)       5e-22               MMAMVPRDISEPFYHSKEWKKTRAAYIASVGGLCERCLKRGIIKPGYIVHHKHYITADNINDPSITLNWD
932248..932622                     PHAGE_Paenib_PG1_NC_021558: hypothetical protein; PP_00957; phage(gi514231254)       8e-06               MSIEKQDVAIQLEYERLRQTLSGISAEKLAAADNLIQRCAFMTITLQILEDEVKSKGPTILMHNGKQTMR
932625..934355                     PHAGE_Clostr_phiMMP04_NC_019422: terminase; PP_00958; phage(gi414090443)             8e-126              MADIQVKIRVDRHVGYPPDYDPITQYWQSFVQNGGDQVVGKKIYRTYKKLIADMHNDNSEWYYSNRRGNH
934374..935609                     PHAGE_Paenib_PG1_NC_021558: portal protein; PP_00959; phage(gi514231255)             2e-116              LAFWNNLFHRKNSGVTVTPEYKLVTNYGNGFFGWNGKVYESDIIRSAIEVKATTIGKAVAKHIRSGTGDS
935587..936294                     PHAGE_Paenib_PG1_NC_021558: peptidase S14 ClpP; PP_00960; phage(gi514231190)         3e-45               MTTVVPIKGDIVTNDYGWLYDLFGDDYASPKSVSDLINKANGDDLSVEINSGGGILDAGSEIYTMLRAYK
936299..937528                     PHAGE_Clostr_phiMMP04_NC_019422: major capsid protein; PP_00961; phage(gi414090446)     4e-72               MNKEEYLKQREALMNDARTAIDKGKSEDANKAMKSVKDLDAKWDQQTKDQANLAALDDHAPITLAQVAPA
937602..937850                     hypothetical protein BN194_10830 [Lactobacillus casei W56] gi|409996748|ref|YP_006751149.1|;  PP_00962     1e-39               MADTPDRSAEFLKALQKGKVVAVGNKGTGEVDVTGLADGTVVKDGDYQVVFDTDNTKTLSSVASDPIDAP
937864..938190                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2588; PP_00963; phage(gi31415853)     3e-10               MADEKSEEEPTLLDLLKQHIRLEDDMDPSMLQFYLDAADKYVQRKVGHSVKYLQLMVATVMNDNRSAGDD
938180..938467                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2589; PP_00964; phage(gi31415854)     3e-06               LELKDGVDAHDRPKQTWEDKRVLYYADIGITSTEKYLAQQNKQDVVLRILIRRDMSITQGGNRVRIRGTD
938619..938780                     phage protein [Lactobacillus casei W56] gi|409996626|ref|YP_006751027.1|;  PP_00965     2e-23               VSLYTKGVEDELLPFIKIFDDVPFQSFRGIPGDENDETITDLYTYIEVIAGGQ
938770..939153                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2591; PP_00966; phage(gi31415856)     7e-11               VVNNNGFETMAKYLSGIKVDESVSKEGLVAAASQFADKLRPELPSEPNAPLAQTYGTLRDKLQVVDKGDH
939165..939812                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2592; PP_00967; phage(gi31415857)     7e-12               MSDKSSKANDIELELTIGDMFFAMKKQNETASTDPVFDTSVIRIPNIKKIAFKGNGKSNDIYASGKKFGT
939889..940254                     PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2593; PP_00968; phage(gi31415858)     9e-21               MAKLSDLVRLRDNHFITIQGAKVPAAFTFASIDAIESAYGQGYKTFEKDLNIMLKRKVIHRDQKTMKLIW
940335..940496                     hypothetical protein BN194_09650 [Lactobacillus casei W56] gi|409996630|ref|YP_006751031.1|;  PP_00969     1e-24               MGYSLQEFMKLTPNLWLKQYLIYIEINNPDGIYKEKPKPIRKQVTLDDIPFFN
940516..943488                     PHAGE_Lactob_c5_NC_019449: putative tape measure protein; PP_00970; phage(gi418488166)     5e-117              MADETQNVVLDFKMNGQVQFANTVKDINAVMNTAAKEYRAQISSMDENASSTQKLAAEQQKLQIQSEAAA
943495..944190                     PHAGE_Bacill_phBC6A52_NC_004821: Gp13 protein; PP_00971; phage(gi31415860)           6e-20               MVELILDGQSLAQSVPGTLVTKKPNIPAAQRDVKFTDVPGRLSGSLTEKRGWKDITWSPELQLVDFKTLN
944187..948593                     PHAGE_Bacill_phBC6A52_NC_004821: endopeptidase; PP_00972; phage(gi31415861)          3e-67               MSTDIELYPRDQTDFSHHGYALDDISNDIVTWQLNAKFTLTFDYPMFSEHAGDLVAENIVRVPVPGGKAA
948622..949047                     PHAGE_Lactob_LP65_NC_006565: hypothetical protein LP65_gp096; PP_00973; phage(gi56693144)     6e-10               MKITLENANIANVYRLVEQIKVKGRDALALAKFIKLLKQTLKSAGEDEQALVAQYALKDENGESKTDSNG
949050..949319                     PHAGE_Lactoc_bIL285_NC_002666: Orf59; PP_00974; phage(gi13095739)                    4e-13               MTLKTNKSISLTGTSTIGDVQVAYLNATIDQEGNGANTVNQSIQNQALYDANKKEVRADIAEFQQLLYDT
949365..949658                     PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein Lrm1_gp17; PP_00975; phage(gi195661217)     1e-42               VTFLGYTMADWAEFISIIGVGVSAGSWLFKKIALDPLRSDIQMLSETINRQLKLHEQSLADLNAHLKTHD
949648..950082                     PHAGE_Lactob_A2_NC_004112: holin; PP_00976; phage(gi22296539)                        2e-55               MKINWTVRVLSVKFWLAVVPASLLVVQTVAAVFGYNWDFASLGKELTAVVNAVFALLTIIGVAVDPTTEG
950082..950270                     hypothetical protein BN194_09740 [Lactobacillus casei W56] gi|409996639|ref|YP_006751040.1|;  PP_00977     3e-26               MEQLKAFATQVVLSLADKDETNESKKRRAVALLHEKAKSLGLDASEQDIDKAVEEAYTNEHS
950257..951231                     PHAGE_Lactob_A2_NC_004112: lysin; PP_00978; phage(gi22296540)                        2e-63               MSIHDWFDRHIGTITYSMYGSRNGADGTADCSGSVSQALKEAGYNISGLPSTVSLGSQLAANGFTRIHVW
951477..951490                     attR                                                                                 N/A                 TCCTGTTCGCGGCA

#### region 3 ####
1027374..1028261                   PHAGE_Coryne_BFK20_NC_009799: gp4; PP_01052; phage(gi157168377)                      6e-05               MTESLDLVIITGMSGAGKTVAMQAFEDLGYFCVDNMPPALLPKFWELVKESGKITKVALVVDLRSRAFYD
1028258..1029286                   hypothetical protein LBPG_00131 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|532356331|ref|YP_008446165.1|;  PP_01053     0.0                 MSRETKFIRVIRGRRPKVVVIGGGTGLPVILHSLHEQDADVTAIVTVADDGGSSGTIRNYINVVPPGDIR
1029291..1030238                   sporulation transcription regulator WhiA [Lactobacillus casei W56] gi|409996714|ref|YP_006751115.1|;  PP_01054     2e-175              MASFASLVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYSLIRQVYHHEA
1030373..1030504                   Hypothetical protein LOCK919_1108 [Lactobacillus casei LOCK919] gi|523513544|ref|YP_008199628.1|;  PP_01055     5e-18               LDACRCLLAWMYPFGDDLFEGAVMILATREKRHRFFEMTVLKQ
1030624..1031079                   MarR family transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|532356333|ref|YP_008446167.1|;  PP_01056     2e-82               MVKPITLNEQLCFAIYKAQKQYNHFYSQALAPFKLTYPQYITLLSLYEHGTMSVKQVGQTLELDSGTLTP
1031196..1031786                   PHAGE_Strept_pyogenes_315_1_NC_004584: head maturation protease; PP_01057; phage(gi28876177)     6e-13               MLVPTVVEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYLYINSPGGVI
1031890..1031961                   tRNA                                                                                 N/A                 GCGCGGTTAGTGTAATGGATCGCACGTGAGATTCCGGTTCTCGAAATCCGGGTTCGACTCCCGGGCTGCGCA
1031946..1031968                   attL                                                                                 N/A                 ACTCCCGGGCTGCGCAGAAACCC
complement(1032191..1033342)       PHAGE_Lactob_PL_1_NC_022757: integrase; PP_01058; phage(gi557308015)                 0.0                 MAQISKTANGSWAFRASTGKDDIRRQVYKSGFKTRREATIAAAKIEEELDSGKIVSDPTFADYFDKWIEA
complement(1033453..1034214)       PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_01059; phage(gi557308016)      6e-139              MKKKQKRVKRPQGEINQRFDEQLSYLSYAADGYDTQDHSLIKMATAPLRTLFLKQNMGEPLIEQLKIDPE
1034233..1034463                   PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_01060; phage(gi557308017)      6e-38               VTVKNSNIKIVSDSNDVWDLPETKFFYSAFSDTPNIGADELAALLSGKALVDLSDGEYIHWIQLTPDAIK
complement(1034719..1035498)       PHAGE_Mycoba_Myrna_NC_011273: gp260; PP_01061; phage(gi203454821)                    8e-06               MATKKVNKVLIALHKYYTVLFAILALLSVALIVLDYMGRISIDKSPYTEIDNGILVIFAIDYFSRMLHAD
complement(1035570..1035845)       PHAGE_Lactob_prophage_Lj928_NC_005354: hypothetical protein Ljo_1458; PP_01062; phage(gi41179295)     6e-10               MNWHDPAQLPYQAAHEIGHVLNQDSGSLYMFTPSKVRYEGEANKRAIDILVPIYFEDVYPEDANIQEFLD
complement(1035971..1036225)       PHAGE_Entero_phiFL3A_NC_013648: CI phage repressor protein; PP_01063; phage(gi281416216)     7e-15               VGIGTNTLYSWKKKIPGGQNLSKVADFFHVSTDYLLGRTDDPSIADKPSKVDLADEDVIMTFEGQKIPPE
1036554..1036766                   hypothetical protein BN194_10580 [Lactobacillus casei W56] gi|409996723|ref|YP_006751124.1|;  PP_01064     8e-32               MSITQFERIKLQLDRNRRAGLKPGSQADLAEYLGVSKTYVHDILRGERLGQKGREYLEKALLYIGLKEAV
1036769..1037542                   PHAGE_Brocho_BL3_NC_015254: gp34; PP_01065; phage(gi327409426)                       4e-56               MNEPQPIEQNGQRVLTTEQLAELYGTTANVIKNNFANNKGKFISGKHYFLLEGQALKDFKDQVKDFDLVP
1037574..1037897                   PHAGE_Lactob_A2_NC_004112: hypothetical protein A2p30; PP_01066; phage(gi22296549)     6e-07               MPSFKVIEDESNYLVFTPEQFEAAVERARSYLEGQRWKVKDCIERLNGYRRSDFVNYVLIPKRDELERIG
1037897..1038028                   hypothetical protein BN194_10610 [Lactobacillus casei W56] gi|409996726|ref|YP_006751127.1|;  PP_01067     3e-18               MAAIIETLVTPTVPFWRYLILIAIGVIIGHCLAGKGNWKTWIS
1038042..1038176                   hypothetical protein LC2W_1077 [Lactobacillus casei LC2W] gi|385819608|ref|YP_005855995.1|;  PP_01068     2e-15               VNISTNLDELEKLLSLATNQTKQLQETLKQISEYELVSKIESRE
complement(1038165..1038476)       PHAGE_Thermu_OH2_NC_021784: hypothetical protein; PP_01069; phage(gi526118358)       2e-11               LKLNGFDDLQKRLSSIQKNAESLAGKRNVSFDVLFPDSFMTAHTKSPNIQSFLADLKVTDQQSFKDLPQK
1038537..1038728                   PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein Lrm1_gp31; PP_01070; phage(gi195661231)     4e-10               MTSAEHTIGDLLNEHNRLTLDVIRGEHSPIAQTLLKHNAEWRKRVYDLFVKADPHELHDPFLI
1038742..1038981                   hypothetical protein BN194_10640 [Lactobacillus casei W56] gi|409996729|ref|YP_006751130.1|;  PP_01071     1e-35               VVLDYVIYVQAESIYKDLVSRRIAKASELALAAADNDSDAQGLGTEWLLLDELIKKIEEDEKKAADAATS
1038986..1039480                   PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; PP_01072; phage(gi78000004)      6e-30               MPPVYDLKSKYATLLAKAEDMEIDPIVLHDTLESIKDAIEDKAVGCVQVIKSLEADVDSIDQEIKRLQER
1039492..1039722                   hypothetical protein BN194_10660 [Lactobacillus casei W56] gi|409996731|ref|YP_006751132.1|;  PP_01073     2e-36               MSNRQPYQTHETASDKLIIQKQTRNKYFTMLNVTPETKEQIRQVSTETGVPMADVTTALVKFGIDHLVII
1039722..1041089                   PHAGE_Lactob_phiJB_NC_022775: type III restriction protein res subunit; PP_01074; phage(gi571797865)     4e-122              MTLRDYQQNTIDRIIRSMKSGHQSIIVQQPPRTGKTVIMAEIAKRTTDNGNHIMFMVHRKEIVDQVKRTF
1041091..1041831                   PHAGE_Strept_PH15_NC_010945: putative NTP-binding protein; PP_01075; phage(gi190151434)     4e-65               MSILPVNKPQTPVDTPRNFFIWGATMSGKSYLAERFPNPLFLNTDGNALANQAPSIQIRNIKSKQGLKQS
1041834..1042343                   PHAGE_Lactob_phiJB_NC_022775: hypothetical protein; PP_01076; phage(gi571797867)     1e-18               MGLLENAKQALDGFDATKDKPTSYDLLPDGDYQVVLSNVDHFVTDGGYDGFRIQLEVLEGEHSGYKDSNM
1042410..1043207                   PHAGE_Lactob_phiJB_NC_022775: bifunctional DNA primase/polymerase; PP_01077; phage(gi571797868)     4e-61               MDNLINYAVAYAEKGFYVLPMHRKKPMIEFADRPAMTADEIKRFWTTHPQAQIALRTVHHFVVDIDQHDD
1043197..1044447                   PHAGE_Lactoc_bIL312_NC_002671: helicase; PP_01078; phage(gi13095906)                 2e-88               LLTDDMKKLQAMQSNVKPMPIAFSLNKDGYIRPNSIRNVVLALEHDPLMMKTFAYNEFTHEVDVIKAIPS
1045043..1045327                   PHAGE_Staphy_vB_SepiS_phiIPLA5_NC_018281: hypothetical protein; PP_01079; phage(gi399528947)     3e-13               MMKTHNTLDDLNNHLFSEMERLNDDTLEGESLEQELRRVDGISKIATQIIGNARTILSAQVAYQNNESAD
1045296..1045643                   hypothetical protein BN194_10730 [Lactobacillus casei W56] gi|409996738|ref|YP_006751139.1|;  PP_01080     5e-63               MGKHLTVYDTEYWRRNALFTLEEEHRAKQIIPGRTWTEATKQINFEFEMNLTSRQIRNWGHRHHVYAAEI
1045636..1046223                   PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein BC1875; PP_01081; phage(gi31415769)     5e-19               MSRLLDDKQLETYKNFVPGHTAAEIANMVHENWGIQLTVQKVHALNIRNNIKSGLYQKYFGKADPRRSSS
1046210..1046464                   hypothetical protein BN194_10750 [Lactobacillus casei W56] gi|409996740|ref|YP_006751141.1|;  PP_01082     6e-44               MNAARRYPTPNDPYVNDKGPWGVKVGEMFVKWAMWGSLFPKLEMKKVVLVSKPKPLNNHDQAIYIARAIG
1047030..1047410                   PHAGE_Paenib_PG1_NC_021558: hypothetical protein; PP_01083; phage(gi514231252)       3e-22               MAMVPREISEPFYHSKEWKKTRAAYIASVGGLCERCLKRGIIKPGYIVHHKHYITADNINDPSITLNWDN
1047467..1047853                   PHAGE_Paenib_PG1_NC_021558: hypothetical protein; PP_01084; phage(gi514231254)       8e-06               LSLKMSIEKQDVAIQLEYERLRQTLSGISAEKLAAADNLIQRCAFMTITLQILEDEVKSKGPTILMHNGK
1047856..1049586                   PHAGE_Clostr_phiMMP04_NC_019422: terminase; PP_01085; phage(gi414090443)             3e-126              MADIQIKIRVDRHVSYPPDYDPITQYWQSFVQNGGDQVVGKKIYRTYKKLIADMHNDNSEWYYSNRRGNH
1049605..1050840                   PHAGE_Paenib_PG1_NC_021558: portal protein; PP_01086; phage(gi514231255)             1e-114              LAFWNNLFHRKNSGVTVTPEYKLVTNYGNGFFGWNGKVYESDIIRSAIEVKATTIGKAVAKHIRSGAGDS
1050818..1051525                   PHAGE_Paenib_PG1_NC_021558: peptidase S14 ClpP; PP_01087; phage(gi514231190)         1e-46               MTTVVPIKGDIVTNDYGWLYDLFGDDYASPKSVSDLINKANGDDLSVEINSGGGIVDAGSEIYTMLRAYK
1051530..1052759                   PHAGE_Clostr_phiMMP04_NC_019422: major capsid protein; PP_01088; phage(gi414090446)     2e-72               MNKEEYLKQREALMNDARTAIDKGKSEDANKAMKSVKDLDAKWDQQTKDQANLAALDDHAPITLAQVAPA
1052833..1053081                   hypothetical protein BN194_10830 [Lactobacillus casei W56] gi|409996748|ref|YP_006751149.1|;  PP_01089     1e-39               MADTPDRSAEFLKALQKGKVVAVGNKGTGEVDVTGLADGTVVKDGDYQVVFDTDNTKTLSSVASDPIDAP
1053095..1053421                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2588; PP_01090; phage(gi31415853)     3e-10               MADEKSEEEPTLLDLLKQHIRLEDDMDPSMLQFYLDAADKYVQRKVGHSVKYLQLMVATVMNDNRSAGDD
1053411..1053698                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2589; PP_01091; phage(gi31415854)     3e-06               LELKDGVDAHDRPKQTWEDKRVLYYADIGITSTEKYLAQQNKQDVVLRILIRRDMSITQGGNRVRIRGTD
1053856..1054011                   phage protein [Lactobacillus casei W56] gi|409996626|ref|YP_006751027.1|;  PP_01092     2e-22               LYTKGVEDELLPFIKIFDDVPFQSFRGIPGDENDETITDLYTYIEVIAGGQ
1054001..1054384                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2591; PP_01093; phage(gi31415856)     7e-11               VVNNNGFETMAKYLSGIKVDESVSKEGLVAAASQFADKLRPELPSEPNAPLAQTYGTLRDKLQVVDKGDH
1054396..1055043                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2592; PP_01094; phage(gi31415857)     7e-12               MSDKSSKANDIELELTIGDMFFAMKKQNETASTDPVFDTSVIRIPNIKKIAFKGNGKSNDIYASGKKFGT
1055120..1055485                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2593; PP_01095; phage(gi31415858)     1e-20               MAKLSDLVRLRDNHFITIQGAKVPAAFTFASIDAIESAYGQGYKTFEKDLNLMLKRKVIHRDQKTMKLIW
1055566..1055727                   hypothetical protein BN194_10890 [Lactobacillus casei W56] gi|409996754|ref|YP_006751155.1|;  PP_01096     9e-25               MGYSLQEFMKLTPNLWLKQYLIYIEINNPDGIYKEKPNPIRKQVTLDDIPFFN
1055747..1058917                   PHAGE_Bacill_phBC6A52_NC_004821: hypothetical protein BC2594; PP_01097; phage(gi31415859)     5e-119              MSDETQNVVLDFKMNGQVQFANTVKDINAVMNTAAKEYRAQISSMDDNASSTQKLAAEQQKLQIQSEAAA
1058924..1059619                   PHAGE_Bacill_phBC6A52_NC_004821: Gp13 protein; PP_01098; phage(gi31415860)           3e-21               MVELILDGQSLAQSVPGTLVTKKPNIPAAKRDVQFTDVPGRLSGSLTEKRGWKDITWLPELQLVDFKTLN
1059616..1064019                   PHAGE_Bacill_phBC6A52_NC_004821: endopeptidase; PP_01099; phage(gi31415861)          1e-66               MSTDIELYPRDQTDFSHHGYALDDISNDIVTWQLNAKFTLTFDYPMFSEHAGDLVAENIVRVPVPGGKAA
1064048..1064473                   PHAGE_Lactob_LP65_NC_006565: hypothetical protein LP65_gp096; PP_01100; phage(gi56693144)     6e-10               MKITLENANIANVYRLVEQIKVKGRDALALAKFIKLLKQTLKSAGEDEQALVAQYALKDENGESKTDSNG
1064476..1064745                   PHAGE_Lactoc_bIL285_NC_002666: Orf59; PP_01101; phage(gi13095739)                    1e-12               MTLKTNKSISLTGTSTIGDVQVAYLNATIDQEGNGANTVNQSIQNQALYDANKKEVRADIAKFQQLLYDT
complement(1065093..1065206)       hypothetical; PP_01102                                                               N/A                 MYGAELTIILVIAAVTAVTPSRQNQHEGCYDRIADPT
1065363..1065824                   PHAGE_Lactob_Lc_Nu_NC_007501: putative holin; PP_01103; phage(gi78000034)            3e-69               MNNLTELLVSLAVAAIPIIGAWISKQVLANKQALTLVKVLGPLANAAVTAAEHLGMTQAIDGAVKKSTAI
1065826..1066878                   PHAGE_Lactob_PL_1_NC_022757: lysin; PP_01104; phage(gi557308014)                     0.0                 MSYTINKEFALGANEGSSQVANRLYIILHDVGAESGARANAAYFKNNIAAEIAYTAFVVGDGGQVYQVGE
1067014..1067036                   attR                                                                                 N/A                 ACTCCCGGGCTGCGCAGAAACCC

#### region 4 ####
1237197..1237208                   attL                                                                                 N/A                 CGTGGTGAAGTT
complement(1237258..1238442)       PHAGE_Thermu_OH2_NC_021784: integrase; PP_01272; phage(gi526118367)                  3e-38               MASISSYKLKDGKKAWEFYIFAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAEAEIIKGHSHYQTERILM
complement(1238571..1238900)       PHAGE_Lactob_Sha1_NC_019489: hypothetical protein; PP_01273; phage(gi418489826)      3e-05               MVKQNVIPINGTPIENPADPYSMQKHDTLKPNTTGGGEPPMDGAKKYATKKQLKRKVKRIDSRFDELDKS
complement(1238893..1239114)       hypothetical protein BN194_12610 [Lactobacillus casei W56] gi|409996926|ref|YP_006751327.1|;  PP_01274     3e-37               MIEVTDGHTFEPLQANFHFNIPLNHLRNGDPTNQFVGIELAWSIYTPEDPRIYDSLKNGVLFRTRTEVID
complement(1239425..1239628)       hypothetical protein BN194_12620 [Lactobacillus casei W56] gi|409996927|ref|YP_006751328.1|;  PP_01275     1e-33               MNGPDTLSEAHFIGLIIVLIGVYFALFGHRQHWIRWLIDPDKPGSNLWWAAVFIIIGALMMMVRKMQ
complement(1239652..1240077)       pyridoxamine 5'-phosphate oxidase [Lactobacillus casei W56] gi|409996928|ref|YP_006751329.1|;  PP_01276     1e-73               MANSTIRQADILLRECTVMQVATLDIDTGFPNIVSLTPLKSHRSLKEILFYTDRDTTTIHNVLEKPVVAV
complement(1240176..1241069)       hypothetical protein BN194_12640 [Lactobacillus casei W56] gi|409996929|ref|YP_006751330.1|;  PP_01277     5e-166              MKADSQRESYTNDASSLMLPASLYQKGIENMAEGISSSIKGALDMDQAALSGYTILKSMSESLTPTIEGI
complement(1241120..1242463)       PHAGE_Entero_ES18_NC_006949: gp19; PP_01278; phage(gi62362232)                       1e-72               MGILDIFKSNEFKQRIESLELENTKLKQESTVKLTLQQMTPIELKKEIDLKTETNSELDQMISKNQSTLS
complement(1242553..1242903)       PHAGE_Lactob_prophage_Lj928_NC_005354: hypothetical protein Ljo_1464; PP_01279; phage(gi41179289)     9e-18               MGKKSIAFIMTMLMAILLIACGSNAAKKADYTANTAEAALNSGKNIDGKTIEFKAGKVIPNGELGHTIWA
complement(1242960..1243343)       hypothetical protein BN194_12680 [Lactobacillus casei W56] gi|409996933|ref|YP_006751334.1|;  PP_01280     1e-68               MLKHYEPDLKVTNVGGVYDDPKSKTVLVTVKEDSGWDDKSAVKLMHEDIASVWKAFKKSKGNSFANIAVM
complement(1243597..1244013)       PHAGE_Lactob_LF1_NC_019486: Lj965 prophage repressor-like protein; PP_01281; phage(gi418489418)     7e-16               MTEFTSDMLREVLNYGFDRGVGAELTYKLKPYTPSVSNPETRWIAVNMNWHKPKQLPYQAAHEIMHVLHQ
complement(1244006..1244209)       PHAGE_Lactob_KC5a_NC_007924: putative transcriptional regulator; PP_01282; phage(gi90592579)     3e-08               MLKKLSVLYDVSIDYLLGNDSTTDKTPSEVDIADPKNDTIMTFEGRPIPPEDLEIIKRLLRGGKHDD
1244484..1244684                   PHAGE_Lister_A118_NC_003216: putative repressor protein; PP_01283; phage(gi16798820)     7e-11               MNPIRKARMKKKMTQEEAAKSIGISYSMYAKIENGNRGASQKTMKRMADFFGESVDALFFEDFVHI
1244721..1245032                   PHAGE_Entero_phiFL3A_NC_013648: hypothetical protein; PP_01284; phage(gi281416223)     3e-06               MNEELKQHALRIAEILQEQGNPYQRIEIDADGIKKISTDWSEPAETSKNPSKLIIKGHPYAMINVTRNNE
1245326..1245472                   hypothetical protein BN194_12740 [Lactobacillus casei W56] gi|409996939|ref|YP_006751340.1|;  PP_01285     1e-20               MEREAMIDFLTRIYPEVPAFAFEQMPDEQLKGHVDEWLAEDADQLAMG
1245538..1246086                   hypothetical protein BN194_12750 [Lactobacillus casei W56] gi|409996940|ref|YP_006751341.1|;  PP_01286     4e-101              MKATISSPLNRFATRTNTPQKVIAYAAKLGRSTINNYFHGTPIRANEATDIANSMNDSELSYEMANLFLG
1246065..1246286                   hypothetical protein BN194_12760 [Lactobacillus casei W56] gi|409996941|ref|YP_006751342.1|;  PP_01287     7e-38               MEQGFTLIDPTKPQRTRKPFKPKVYWTPKDVMAHYQVSAATVSRWKKRGAPFVGPGKTQRVEPEKMERWF
1246299..1246427                   hypothetical protein BN194_12770 [Lactobacillus casei W56] gi|409996942|ref|YP_006751343.1|;  PP_01288     5e-17               MLEAIMSVLFDPTSAFWKYLLVAMAGIMIGATAVGGWKQWTR
1246521..1246934                   hypothetical protein LCABL_13040 [Lactobacillus casei BL23] gi|191638080|ref|YP_001987246.1|;  PP_01289     1e-76               MTMLDYNTAVLNEYQRRERLEDKAIADWESYHGTVLPKDMDIEQAEEFLATADEYEVDTKKPWLYQSCAA
1246947..1247810                   PHAGE_Lister_A118_NC_003216: putative recombinase; PP_01290; phage(gi16798835)       6e-58               MTTQYDLKKMPVKKLIETQTIKNKFAALLDKRAPQFLSSIASAVSLNPSLARVDQLSVINSALVAATLDL
1247890..1248591                   PHAGE_Strept_pyogenes_315_3_NC_004586: hypothetical protein SpyM3_1132; PP_01291; phage(gi28876302)     2e-44               MAELQGKWIPRGDPTALLVGNYLHSYFESKQAHESFIKGHPEMFSTRGSSKGQLKATYKQADAMIATLEA
1248607..1249572                   PHAGE_Lister_A500_NC_009810: gp45; PP_01292; phage(gi157325004)                      5e-22               MDLFKLIREFYIQQSVNPLSTGQIALWHGLVYQCNQLGWPSEFNMPNRTLETLTGLSRQGIVKARNALKQ
complement(1249699..1250079)       PHAGE_Staphy_JS01_NC_021773: hypothetical protein; PP_01293; phage(gi526003585)      5e-13               MKLNPDCLRDVLLVVETNASTSQWVEAKTLLADPRMSSYSYDEIAYHVRQANWAGLLAEVKWFMGAGFLI
complement(1250170..1250298)       hypothetical protein BN194_12840 [Lactobacillus casei W56] gi|409996949|ref|YP_006751350.1|;  PP_01294     2e-13               MANKTTSRKAASAASAVLRDRRTSKTSKTAAASALAQRSKKK
1250414..1250626                   PHAGE_Lactob_prophage_Lj928_NC_005354: hypothetical protein Ljo_1453; PP_01295; phage(gi41179300)     5e-08               MWYIIEKIMNKKGYSIRKLSRVAGYKNPTTIYSIKTGQSKDPSFSTMIRIADALGVSLDELRPDKQGEKK
1250623..1251072                   PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein phiAT3gORF33; PP_01296; phage(gi48697293)     2e-56               MTQVTVRFYKQGDKVWRDFKAELQKRYKNAVKLDISESEAFSKIEKQAFNNLIVVSKKAIVEKRAVAGVD
1251119..1251373                   PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_01297; phage(gi557308031)      2e-40               MQAIKTKMMVGDLVMVPDRVFMGVRDLGGVARIIRIERYNARGERQDINKPVAFDGKAPKELITTVEMVD
1251439..1251735                   PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; PP_01298; phage(gi557308032)      4e-55               MFGGAKVKKQATETVMLAVRKAMNQGVKFQWGKPLSFDWYWYDKRTDPDNIAFQHKFIFDGMQKAEFLEN
1251748..1252041                   hypothetical protein BN194_12890 [Lactobacillus casei W56] gi|409996954|ref|YP_006751355.1|;  PP_01299     1e-48               MNKKLTFTVTVLAGLMFGAGATTIADNVWQGHQNIVETKNNIDKLTAKINASKSSLSDLQHQLSDVRTQA
1252101..1252244                   hypothetical protein BN194_12900 [Lactobacillus casei W56] gi|409996955|ref|YP_006751356.1|;  PP_01300     1e-19               MSEQWTNSQNHFIQSSMRPLQRLNNGLLPSSSGKQKARLMKDAPEAD
1253522..1253594                   tRNA                                                                                 N/A                 GTAGATGTAGCTCAATCGGTAGAGCGCGCAACTTATAATTGCGTGGGTGCAGGTTCAAGCCCTGCCGTCTACA
1253654..1254034                   PHAGE_Lactob_A2_NC_004112: hypothetical protein A2p55; PP_01301; phage(gi22296574)     1e-47               MKPINFRKSEPTIEELSDRIDAYNRRASELMKRNRPLTREDLTDVRELRKSLDSEYHEYNLSRNDFLHAG
1254543..1255691                   PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein Lrm1_gp50; PP_01302; phage(gi195661250)     0.0                 MQWTDEQISGIRKLASEGFTRRETADKLGISYDALQGKAKRLGIEFQKPLKNEYDSDGTQSSETILKVVR
1255846..1256007                   PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; PP_01303; phage(gi78000021)      2e-24               MPVQTVTADADDYERFRKLGYRSMPVVTIYKADGTHDEWCDFQVDKIKQYTED
1256044..1256616                   PHAGE_Lactob_phig1e_NC_004305: putative terminase small subunit; PP_01304; phage(gi23455798)     2e-33               MRLTAKQKKFVDSYIADSNATRAALEAGYSKRTARFVGAENLTKPNIKAAIDERMKRLESDKIATAAEVL
1256600..1257853                   PHAGE_Lactob_prophage_Lj965_NC_005355: putative terminase large subunit; PP_01305; phage(gi41179257)     8e-154              MTTPIDQFKGKQLDIINWWRRYPDKQTIIADGAVRSGKTFAMSISYVLWSMIVFDREQFGIAGKTIGSLR
1257909..1259285                   PHAGE_Lactoc_Tuc2009_NC_002703: minor structural protein 1; PP_01306; phage(gi13487832)     9e-77               VFIFPTDEELTGDDINAFITANDDLAKNKYLPAKKMYLGQHQIIDDAKKDHGPDNRLVGNLAHYIVDTYN
1259251..1260243                   PHAGE_Lactoc_Tuc2009_NC_002703: hypothetical protein Tuc2009_32; PP_01307; phage(gi13487833)     2e-38               MTTTTQQQIASNSAYWNKRTAAERKWIVENLKNDEAFNARIQEYFDKALTNIQKDINSEFAKYAAYSNDS
1260368..1261006                   PHAGE_Staphy_StB27_NC_019914: scaffold protein; PP_01308; phage(gi431809709)         2e-26               MIPKILMPMNLQFFAEDTGADGSQENQQNGESQSDNDTNAQDSEHSQDSSHESSDQHTYTDEQVNDIVKK
1261019..1261333                   PHAGE_Entero_phiEf11_NC_013696: conserved hypothetical protein; PP_01309; phage(gi282598728)     7e-32               MYAGKKVTASEINFLDSEKFVSFTHQADSSTAGVVDGVLPAGSIYPKNDATAVGVTINDVDVSEGPQPVG
1261347..1262387                   PHAGE_Entero_phiEf11_NC_013696: putative head protein; PP_01310; phage(gi282598750)     1e-105              MPAILDLFNQKTVLDYVQNRQYPQLLGDTLFPSTKINQLDFEFLRGGSKTPIVASISAFDTEAEIGSREA
1262988..1263776                   PHAGE_Entero_phiFL1A_NC_013646: hypothetical protein; PP_01311; phage(gi281416374)     6e-102              LRDVVLLFTRHDDFIPQRLTDKYGVEVHTYNDLRSDQSYIPSVKPWLWWQYLAEDKSRENEEYFYFDSDV
1263776..1264150                   PHAGE_Lactoc_Tuc2009_NC_002703: hypothetical protein Tuc2009_39; PP_01312; phage(gi13487840)     1e-11               MAESDPIKLADLKTMMEIKTDAQDGVLNLIIKNTTQALRFKLGLRTDEAFPNELAYIALEVCVRRYNRRK
1264155..1264457                   PHAGE_Lactoc_Tuc2009_NC_002703: hypothetical protein Tuc2009_40; PP_01313; phage(gi13487841)     3e-07               MRLDHEVTFWLDDEEYNPKTHEYGEPKEVASAAASVTDMGTDKSAQLFGNYAQKAKVIRLVEPITVNWSY
1264454..1264819                   PHAGE_Lactoc_Tuc2009_NC_002703: hypothetical protein Tuc2009_41; PP_01314; phage(gi13487842)     2e-14               MSKASISYNMQIKGMDKLVAGLLRRAKMDVVKQIVKQQTAQLQTRAQQMTGTVYAHPTGATKRGIKLSLE
1264820..1265224                   PHAGE_Strept_858_NC_010353: orf15; PP_01315; phage(gi168229288)                      1e-14               VIQITSPEQELYDYFYAFSQSSGYKTYDHLPMQQENAPYPFVIVGDIQVVPTATKTSLNGNVLITIDIWG
1265236..1265835                   PHAGE_Lactoc_Tuc2009_NC_002703: hypothetical protein Tuc2009_43; PP_01316; phage(gi13487844)     2e-12               MANELKVLEGMDVVALARKHSDQATVNGQVIPWQTSLSFDPSVDSDSTVTKDGNVATRSSASTDLEVEFL
1265974..1266309                   PHAGE_Entero_phiEf11_NC_013696: putative phage protein; PP_01317; phage(gi282598743)     1e-18               MQLTINGKEYELNFGVRFVRELDKTIGASIKGINFGMGVAKALVGLGSYDSAVLSDVIYAATAVSKKRPS
1266435..1266761                   PHAGE_Lactoc_Tuc2009_NC_002703: hypothetical protein Tuc2009_45; PP_01318; phage(gi13487846)     1e-06               MEAYQLKQVDRQNEIAQQAWMNQQVQATTGSKNPKPKFKTFDDFFDKKEIVDKVRSSYEPDYEISLMSKT
1266754..1270089                   PHAGE_Lactob_8014_B1_NC_019916: tape measure protein; PP_01319; phage(gi431809811)     4e-154              MADSYSVEAILSAVDKNFSGTFENMSSVANSAVDSISSGLASLGKYTAVAGAAVTAMGVQSLKSFGTFEA
1270092..1272056                   PHAGE_Lactob_PL_1_NC_022757: tail component; PP_01320; phage(gi557308007)            0.0                 LYDFRETTPFTGSDDNQRPAEAMLIDGQYIEDLIPGYSTLQVSGRELLSQSIEKQTIGKSDGDFIQYARN
1272053..1275172                   PHAGE_Lactob_PL_1_NC_022757: host interaction protein; PP_01321; phage(gi557308008)     0.0                 MKDFYFVDRSWHLLGIATAGGDGVIHIVDDTDDQLISAGARTYSGTILFTPELSSKVQTMAARGNYILYM
1275182..1275505                   PHAGE_Lactob_J_1_NC_022756: hypothetical protein; PP_01322; phage(gi557307941)       1e-55               MEADKVKAIFNTDEDGYITGYQQEFWDGSQWQTPFDDEKAILIAPEELKKIAIGASKLADDGTVVIDTDK
1275498..1275629                   PHAGE_Lactob_J_1_NC_022756: hypothetical protein; PP_01323; phage(gi557307942)       1e-19               VTNYDQCALLYSWGIDLTPYVPVMITPDQYKQITGSDYVASKS
1275661..1275960                   PHAGE_Lactob_A2_NC_004112: hypothetical protein A2p16; PP_01324; phage(gi22296538)     1e-55               VDFKSWIDMFVELGGGALFGWFASQWRMHRKHGKAIDSGLVGLLHHEVYMLCNHHIEVGYISTDDLDDLN
1275975..1276388                   PHAGE_Lactoc_Tuc2009_NC_002703: holin; PP_01325; phage(gi13487855)                   9e-21               MKINWKVRVLSVKFWLALVPAALLVVQTAAAVFGYNWDFANLGKELTAVINAVFALLTIVGVAVDPTTEG
1276399..1277583                   PHAGE_Lactoc_Tuc2009_NC_002703: lysin; PP_01326; phage(gi13487856)                   2e-85               MKLKTKLITLVVAFLAAISFALPSQVNAAKGDQGPDWAKYQGASGRYGTDQDKFVIAQIGGTYGGTYIDQ
1277937..1277948                   attR                                                                                 N/A                 CGTGGTGAAGTT
1277971..1278135                   hypothetical protein BN194_13210 [Lactobacillus casei W56] gi|409996986|ref|YP_006751387.1|;  PP_01327     5e-25               VKPKKLIYSYFCFYTGDLKPYEISVQANHNKKNMFALLGRPGYEDMTKELNARP
complement(1278494..1279273)       PHAGE_Lactob_prophage_Lj965_NC_005355: hypothetical protein Ljo_0291; PP_01328; phage(gi41179221)     3e-26               MDMPTIEALKNARIKWLDVSFSYKDKNHFFEIRTPFPDMFHDNISLVLYKDADGNLMLSDDGYTMDELGT
complement(1279375..1279662)       antibiotic biosynthesis monooxygenase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|532356546|ref|YP_008446380.1|;  PP_01329     9e-49               MKIINVKLVVKPDRDAAYRQFIAALVQGSRAEQGNLSYDHYQSLTTPNEYEIIEHWRDAEAVESHNGTAH
complement(1279844..1280374)       hypothetical protein BN194_13240 [Lactobacillus casei W56] gi|409996989|ref|YP_006751390.1|;  PP_01330     1e-92               MTNQIFFDGILLLLTIGAITEITGVVKVIKAKRPTKGANSYQVVMLSAKMLKTFPEEMKRAQRVALLLRL
complement(1280352..1280477)       hypothetical protein LC2W_1295 [Lactobacillus casei LC2W] gi|385819826|ref|YP_005856213.1|;  PP_01331     3e-15               MGQALRIKIYQRHLKPLDVITVETAFLIQFLEVPDDKSNLF
complement(1280455..1281276)       PHAGE_Strept_pyogenes_315_3_NC_004586: putative mitogenic factor; PP_01332; phage(gi28876265)     2e-10               MPLAVVGLLLGGCSTTNSRSVKSAGDPVASQTKANKKTQSAISSLDSELTEKRKEITDLKAKLAKTQPAA
complement(1281303..1282052)       PHAGE_Cronob_ESP2949_1_NC_019509: tail fiber; PP_01333; phage(gi422935481)           2e-08               MSTLGNIFVLLGLVGSVWGIIRLLRQRKHPLTKRLNLIMLIGGIILVIVGSPMANTKAASGSPHQSSSVS
1282249..1283247                   PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; PP_01334; phage(gi588498272)     4e-58               MSPYTHLTLKDRESILLGISTGKTLDTIAKEIGRSKSTVSREIARNGGWRSYSAATAQDRYRRVRLASRR

#### region 5 ####
2039889..2039902                   attL                                                                                 N/A                 CAACGTAAACTTCG
2049963..2050292                   PHAGE_Salmon_Fels_1_NC_010391: putative transcriptional regulator (repressor); PP_02106; phage(gi169257171)     1e-05               VSLQEKIAHRIHDLRLSKSMTQEQLAEKANMDVSMLARIERGSRGDIRISTLERIVKGLDVSLQEFFTFG
2050669..2051313                   hypothetical protein BN194_20800 [Lactobacillus casei W56] gi|409997745|ref|YP_006752146.1|;  PP_02107     3e-120              MQKSFIAVWTLFLGLGLVGCGHQQQASPSSSSKKTSQQTSSRQASQSSSHSSKIASSSSDASHSTTKQPL
2051507..2052292                   PROPHAGE_Staphy_N315: transposase; PP_02108; phage(gi15927655)                       2e-27               MSQYDPTLSVLGIPDHNIKVAFVRHEYRGNGVRRRQYHVIDAELTYRLTRCPLCGFEALHPNGFYTAHVR
2052258..2052743                   PROPHAGE_Staphy_N315: transposase; PP_02109; phage(gi15927655)                       1e-07               VPSRVQALKQLDDKHSRPYKIMKTNWRLFHQTAPDAKHKQFLFGLNEYVTQQEAIDIALDTEPKFKQTYE
complement(2052863..2053459)       hypothetical protein BN194_20820 [Lactobacillus casei W56] gi|409997747|ref|YP_006752148.1|;  PP_02110     8e-108              MFWRREEIIRLNIRANQPSENATILRAGYLLLYSSWEGFIRSIANLYVVFVFSRDISLHDLRDGFQAVYF
complement(2053488..2053778)       hypothetical protein BN194_20830 [Lactobacillus casei W56] gi|409997748|ref|YP_006752149.1|;  PP_02111     8e-47               MKFKEASLILASLFGENAFQKWGESKQKYYGPCLRSIFEVLFPLVANNLELLVSIQKEISNRKEYKEATK
complement(2053810..2054160)       PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; PP_02112; phage(gi588498272)     2e-18               MACGKPALNTAFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLR
2054207..2054503                   PROPHAGE_Xantho_33913: IS1480 transposase; PP_02113; phage(gi21231089)               6e-26               MFSLASQNLELVQHVMVDGGYTGNDFADQVKLILNAKTTVAKRNELHTFTVLPQRWIIERSWSWLDKCRR
complement(2054490..2055098)       PHAGE_Spirop_1_R8A2B_NC_001365: putative transposase; PP_02114; phage(gi9626114)     1e-06               LGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYDPELAQQDADRKRRNCGRRSM
complement(2055201..2055722)       hypothetical protein BN194_20880 [Lactobacillus casei W56] gi|409997753|ref|YP_006752154.1|;  PP_02115     2e-91               MGNIIDDVMGHITPIDKKEVDEFKLLVSEEAFLTENRDKITFSEGFPPELAGAISGLGAGAVGVGVVFAV
2055895..2056176                   PROPHAGE_Xantho_33913: ISxac3 transposase; PP_02116; phage(gi21231087)               1e-08               MTYSRNRYDQDFKKNAVRLSFNSSKPVKIIASELGVPESALYRWRKLYTEDGKQTPFASLEAENRALKRE
2056242..2057012                   PHAGE_Lactob_phiAT3_NC_005893: putative transposase B; PP_02117; phage(gi48697274)     7e-26               LLDVSTSGYYAWRRALPKRNTKEGQYRQRIKHFFDQGQGTYGPKRICGLLRKNGNKASYHRVARLMADGG
2057048..2057347                   transposase [Lactobacillus casei W56] gi|409997756|ref|YP_006752157.1|;  PP_02118     1e-55               MQHFSHHYQSDISRQQFDLIRQDLEASRKRTHPKHIDPYDIFCAMLYVLKNGCTWRDLPADYPKWSTVYY
2057581..2057802                   transposase [Lactobacillus casei W56] gi|409997757|ref|YP_006752158.1|;  PP_02119     7e-33               LVRTMMVDSGYTGQNFANEISSLTSAKVIVVKEMSYTNFRLSPNGGSLNVHLVGWEIIIVYGVTVSVSST
2057866..2058114                   hypothetical protein BN194_20930 [Lactobacillus casei W56] gi|409997758|ref|YP_006752159.1|;  PP_02120     4e-39               LIFAIYYHGNEAKIEGLLTASQVFLSIALPFAIIPLVMFTSNKKLMGEFANHTWVKYAAWFATIVLVTLN
2058271..2059179                   PHAGE_Lactob_Lb338_1_NC_012530: Mg2+/Co2+ transport protein CorA; PP_02121; phage(gi226377699)     9e-05               MIKPEKTINGTKWIETIQINAEERATLEDQYGIDEDIIEYVTDNDESTNYVYDINEDDQLFIFLAPYALD
complement(2059463..2060392)       PHAGE_Staphy_prophage_phiPV83_NC_002486: transposase; PP_02122; phage(gi9635740)     3e-50               LSSITYSERIKIETFCELGLSNIQMSVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSD
complement(2060506..2061402)       Proline iminopeptidase [Lactobacillus casei W56] gi|409997761|ref|YP_006752162.1|;  PP_02123     2e-175              MVIATTKILTLANGYHLWSQKQGKGTTQLLCLHGGPGSDHEIFEEFGNHLADQDISVYMYDQLGSWYSDM
complement(2061406..2062263)       D-aminopeptidase DppA [Lactobacillus casei W56] gi|409997762|ref|YP_006752163.1|;  PP_02124     4e-162              VLKIYISTDIEGLAGIVDFSQEDEDREIFRDLYNQQIEWVLQGIQQSNRNDEVTDILIADSHAKGLNLSY
complement(2062263..2063393)       aminopeptidase ysdC [Lactobacillus casei W56] gi|409997763|ref|YP_006752164.1|;  PP_02125     0.0                 MSIGNSWHRLKGNQKLEDTKQIQLIKDFSDAHGVPGQEQEVVALYKDRMKGLGTTTIDGMFNALTALNGN
complement(2063377..2064996)       Lipoprotein, peptide binding protein OppA-like protein [Lactobacillus casei LC2W] gi|385820630|ref|YP_005857017.1|;  PP_02126     0.0                 MIKKTKLPGLVTVMCSATLLLAACGKQSAPETHDSINIGESAALSTADNSQAMDNTSSDVMEQVGEGLYD
complement(2065180..2065878)       PROPHAGE_Brucel_1330: transposase, putative; PP_02127; phage(gi23502708)             9e-43               MNHFKGRHFQKDIILVAVGYYFRFSLSYRDIVELLRDRGITVHHTTVMRWVHHYGPIFKALWRRHQTAHA
2065870..2066238                   restriction modification system DNA specificity domain-containing protein [Lactobacillus casei W56] gi|409997766|ref|YP_006752167.1|;  PP_02128     7e-30               VIHARNPSFLGTQYTKIKSARKICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNRLKVFGINYD
2066943..2067059                   hypothetical protein LCABL_21490 [Lactobacillus casei BL23] gi|191638908|ref|YP_001988074.1|;  PP_02129     2e-14               MDKCILELINTVEIDKLGLDKGHFITDEKFTEQLTANY
2067071..2067265                   hypothetical protein LC2W_2104 [Lactobacillus casei LC2W] gi|385820633|ref|YP_005857020.1|;  PP_02130     5e-28               LPLLVAIIHVGVALPFVQRLLRVFGLTNWYFFLNVSLITLAILALVYVLVYKLTRNIYYRVVSE
complement(2067325..2067444)       hypothetical protein LC2W_2105 [Lactobacillus casei LC2W] gi|385820634|ref|YP_005857021.1|;  PP_02131     8e-15               MKAISKYFFDELPELPDGELLHEKNRPVAVNAYRSILNQ
2067508..2067906                   hypothetical protein BN194_21030 [Lactobacillus casei W56] gi|409997768|ref|YP_006752169.1|;  PP_02132     8e-69               MSSEQEVTRMFICYVQQALKNERINRYKASLRQIKEIPLEAWILEEIEDSYHLDEFRLTDEEIEHLEDFI
2067927..2068178                   hypothetical protein BN194_21040 [Lactobacillus casei W56] gi|409997769|ref|YP_006752170.1|;  PP_02133     9e-41               MHYSEIDNLVPVILAVQEDDNNAITLLLELFGRVIDYEARYGHRHIDPDLRQELQIKLIYIAKCFDVEKH
2068534..2068782                   hypothetical protein BN194_21050 [Lactobacillus casei W56] gi|409997770|ref|YP_006752171.1|;  PP_02134     4e-38               MVHVITMTKHELVALGYGASRAQDIIRRAKLLMVRKGVPYYKSPKLGRVPVTAVEEILGLQISTRTLAEL
2068786..2069979                   PHAGE_Bacill_phIS3501_NC_019502: phage integrase; PP_02135; phage(gi422934298)       3e-44               MATTKDPIKTRKNGTFYFRAYLGVDPKTGEKIQKQVGGFTTRRDARKAYKEMVGGSVEKVVAERDQQHIQ
2076456..2076469                   attR                                                                                 N/A                 CAACGTAAACTTCG

#### region 6 ####
3021338..3021350                   attL                                                                                 N/A                 CCGTGGTTTTCTC
complement(3021365..3022234)       PROPHAGE_Oceano_HTE831: integrase; PP_03077; phage(gi23097608)                       7e-38               MFNNHILPAFGGKRIATITTKDVQKAVKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMDKNPAKAVVLPH
complement(3022264..3022521)       PHAGE_Thermu_OH2_NC_021784: integrase; PP_03078; phage(gi526118367)                  4e-11               MASIKKYATKDGKEFWRVQVFAGNDPQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEKEKPKPVF
complement(3022634..3023272)       PHAGE_Lactob_phiadh_NC_000896: hypothetical protein phiadhp25; PP_03079; phage(gi9633025)     4e-10               MTNNRIKAAREAAHLSQGDLAAQLKVTRQTISAYERGLREPRMDVWKSLSDALSVSIPYLQGISSDPIAI
3023518..3023715                   hypothetical protein BN194_30180 [Lactobacillus casei W56] gi|409998683|ref|YP_006753084.1|;  PP_03080     1e-28               MPQQQTIQPQIPEFLNLGEACKLLSVSRGTLDKLIKRGEIKVTHVNTAKRISKKQLIEFMASREV
3023783..3024004                   hypothetical protein BN194_30190 [Lactobacillus casei W56] gi|409998684|ref|YP_006753085.1|;  PP_03081     6e-34               MNLFSKDEIALDHELGNLIDDIQLNVHGIAEDSTVTVDGKYIPNSELAVTTAKELLRVSEILKLYENEDY
3024115..3024306                   hypothetical protein BN194_30210 [Lactobacillus casei W56] gi|409998686|ref|YP_006753087.1|;  PP_03082     4e-30               MAKMINSKYGWTWSQFVKADADCDRYWAAKKAEKRSLIEATKKSPRVAPQGEKKTSEKIQINF
3024353..3024643                   hypothetical protein BN194_30220 [Lactobacillus casei W56] gi|409998687|ref|YP_006753088.1|;  PP_03083     2e-50               MKNVSTTVNKPLDLCDSLYDLRKAKGALSALCDELDEFGISVCHFDKNHSHDNAKLVALEALRDFDTWEC
3024640..3024828                   hypothetical protein LC2W_3089 [Lactobacillus casei LC2W] gi|385821611|ref|YP_005857998.1|;  PP_03084     2e-26               MMKEDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLLEGDAADGRRA
3024812..3025624                   PHAGE_Lactoc_bIL310_NC_002669: hypothetical protein bIL310p24; PP_03085; phage(gi13095885)     6e-25               MVDVLKVALGYQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGLDGVLVFDID
3025637..3027223                   PHAGE_Entero_EFRM31_NC_015270: DNA primase; PP_03086; phage(gi327198106)             8e-34               MDSLKEELNKSPEFTQLKVVSKSTLEPFDVNKYPDPPDKTEKGIRAYNKELAKKLPSWLKVWFQSEQKDE
3027549..3027884                   PHAGE_Lactob_phiAT3_NC_005893: putative head-tail joining protein; PP_03087; phage(gi48697266)     7e-18               MKNYSIARLNKVAEIGKTVSRRTGAGINISTFTPTGTLFYGSYNRTMTQTYQITGTDLADTIAIVIRHTD
3027889..3028074                   hypothetical protein BN194_30270 [Lactobacillus casei W56] gi|409998692|ref|YP_006753093.1|;  PP_03088     6e-29               MKLFEYTAYQGELNGIIDKFMMLHRWQVGFIRVFSAPDNMITVQLYYRDDKPEPEKAGVLA
3028110..3028493                   PHAGE_Staphy_JS01_NC_021773: endonuclease; PP_03089; phage(gi526003569)              4e-18               MVPFNQRYCDKHQPEPRASDNERYAYRKAIGGRYFKFYKSKAWRKLSYSYRLAHPLCERCQANGLYVQAQ
3028610..3029080                   PHAGE_Staphy_JS01_NC_021773: putative terminase small subunit; PP_03090; phage(gi526003597)     4e-17               MGAPLKSITQMRGAMSKKKLADRRDMEESLFTYQELVDQPPTWLDEYAVTEWQRIVPLLKKDIPVSELDA
3029077..3030780                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; PP_03091; phage(gi418489385)     1e-116              MNYATEYTDKVLSGEIVACKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPARDGSPL
3030746..3030925                   hypothetical protein BN194_30310 [Lactobacillus casei W56] gi|409998696|ref|YP_006753097.1|;  PP_03092     6e-26               MTFIRAMTLVFNVQTVLLMLGLICMVVGIWWLFGFGVGMLAVGTALISVAVIINFNKGR
3030930..3032111                   PHAGE_Staphy_StB20_NC_019915: portal HK97 family; PP_03093; phage(gi431809767)       3e-60               MSFFTNDTTQPRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIASDLATNPIEYSDKRISV
3032098..3033654                   PHAGE_Entero_EFRM31_NC_015270: major capsid protein; PP_03094; phage(gi327198115)     4e-44               MNQDDVEKRLNPDADLTAADPTTATDSQGQDDPDTQQQEDTTSSPKKLSGYAVVFNSPSKDLGGFKEVVD
3033709..3034002                   PHAGE_Entero_EFRM31_NC_015270: head-tail joining protein; PP_03095; phage(gi327198117)     1e-08               MTVTTNDIKNSLRVQTNTDDSLISNYLTAAQDYVHNAVDSTAAIDELQAYSQFDIAVAMLTEFWYQNRGA
3034991..3035003                   attR                                                                                 N/A                 CCGTGGTTTTCTC
