gi|158967071|ref|CP000033.3|  Lactobacillus acidophilus NCFM, complete genome. 1993560, gc%: 34.71%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
733013..733026                     attL                                                                                 N/A                 AAGAAGATAAGCAA
complement(745463..746965)         PHAGE_Lactoc_bIL310_NC_002669: helicase; LBA0757; phage(gi13095886)                  3.56e-57            LactobacillusacidophilusNCFMMYMENITPKLDQKLVDEFNNSPISLTYLKSILRNDGHERRQLLKDKSDKKDKNIILPMRTVTNILEYHIIWAVLGNDKEDWQKSALYFYNTESGIYEKDSLLIEELINTVEPQITERNIKEVKSKLRIESKRLFLTNDPNLYALGNGIFDAKKHKLLAYSPKCVFTSKIAVNYNPNAQEPRFDNWSFSKWINEDIAENKTDKIKLIWQTIKAVVNSNYSYHSAVFLIDSKKGSAGKGTFEALLENIAGPNNYATIKLNQFEKAPILATIVNKPLVIGDDNDPNRAVDSSENFKSASTGDPIVINDKFEKAYSYKPTCLIVQSLNALPVFKDNTDATYRRIRVIKFNKKYIENAKNRRVKDEYISNKELLEWIVKKAIDVKIDGVMIRTQESNEILKENQIDSDSFLQFTNDIIVPTTNGYRFKDDTYQAYKKWFEITGHQFGLETYRGFNKRMREDIGLKQSRKMRNGRKMDVWLNIQLKTDSGNLNDMDLKDLNGRENN
complement(747077..747301)         PHAGE_Strept_mu1/6_NC_007967: hypothetical protein; LBA0758; phage(gi93007417)       4.06e-06            LactobacillusacidophilusNCFMMQSSKPYLNRKEIAKYFGVADSTITYWASLGMPVANIDGRKLYGKASITAWLASHEMPSQKQNKKPVTMGVVKD
complement(747374..747598)         hypothetical protein; LBA0759                                                        N/A                 LactobacillusacidophilusNCFMMNNEIKLHQALYEMKAVAEQLYPLYKALTDEIEQLTEDDPNDPITTKKTLKYLSEDVFDLGTRLIDNAKSIEKE
complement(747602..747985)         hypothetical protein; LBA0760                                                        N/A                 LactobacillusacidophilusNCFMMNSKLVIDMQRDLRAHGINLSLEQTYQHLLKANFIDAEGEPTEWAIKNGYVGVEYSYPQGMPTQDESDILTVLGYLPQSAIHHNDCPNLSGIDKEPLKKAIKQALHDDAISINGRKKWKNVLLDLEA
complement(747989..748207)         hypothetical protein; LBA0761                                                        N/A                 LactobacillusacidophilusNCFMMTNYSSDGSNVVDRWYKDGYLYCAFVDGTIMEYGRNKIPERYIEVMRNELAQTVYDLQGGKYDFDDFEPEEA
complement(748200..748406)         hypothetical protein; LBA0762                                                        N/A                 LactobacillusacidophilusNCFMMSKEYLTLKEAMSYMGFTTYDSLRKVIKLGLPVIKFGNSKRISKTAIDDFMQSHTAVVHPTKELVNND
748541..749092                     PHAGE_Lactoc_bIL309_NC_002668: Orf32; LBA0763; phage(gi13095837)                     3.18e-10            LactobacillusacidophilusNCFMMNRIREIRENKKLSLKKTTELLKSNDLLTLTPDALAKYERGDRQPNEPTWQALANFFNVSVDYLKGHGYSKEHIYKCLDNAYKEPYTKDYEIEPPFTNPVLSAKEEIEKYCEQNKISIPKDTDLDFWKTNFNFIFNDKSVNRLLTTKDKYSDSDIKELIINAIFFASLSPETKRALNLMKHNS
749258..750328                     PHAGE_Strept_T12_NC_028700: site-specific recombinase; LBA0764; phage(gi966201482)     1.19e-59            LactobacillusacidophilusNCFMMNNDIKEYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKIIKGEYIPESKGHITFNKLYEMWLKLYRETVKTSTYATTTRYFEDHILKQLGSKYIDKLTVLDCQKAVNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNEPKPFTDFYSKDELNTFLRNAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISINKDVTVGLNNELYEDTPKTENSFRTLDMDATTMEYLKEWRLMQQKTMLELGYNFLNIDNLLFPTINNGYLSMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLGLTRP
complement(750576..751928)         UDP-N-acetylmuramyl tripeptide synthetase; LBA0765                                   N/A                 LactobacillusacidophilusNCFMMSFKSGIAKVAGKSSYWFLHNVLKGGTSFPGKFAMKIDPNVLNSLAKGYETVIVTGTNGKTMTTALIVEALKKKYGDVLTNPSGSNMQQGIVTAFLAHKNKHVKRKIAVLEVDEANVKMVTKLLHPSVFVLTNIFRDQMDRYGEIYTTYEKIVDGIKLAPDATIIANGDASIFSSVDLPNKKIFYGFKLPDDKKENDFKAPVNTDGVLCPKCDHILHYHERIYANLGDFFCPNCGYHRPDLTFTVNKILEQTPNSVKFQMGNKDYSINIGGTYNIYNALAAYSVARHFGLTEAEVAQAFAENKRIFGRQELIHYGGKDIDLILVKNPVGLDEVLHMLNTEKDDYSLVALLNANHADGIDTSWIWDADFEGLDRSKIKKVLVGGQRWHDMGFRLEIAGFDPGKMSTNPDDDSLIEEIKKLPTKKVYILSTYTAMLALRKKMAEKKIIKAGM
752052..752675                     PHAGE_Klebsi_vB_Kpn_F48_NC_048694: holin; LBA0766; phage(gi100034)                   7.49e-60            LactobacillusacidophilusNCFMMIKREGPKVAQLFFRYGAMSSGKTIEILKVAHNYEAQGRKIALMTSGLDNRSGVGTVASRIGIHRKAIPITEEMDLFEYIKEMNNHDLADGDGKLACVLIDEAQFLKRHHVLECAKIVDEFNIPVMTFGLKNDFQNHLFEGSENLLIFADKIEEMKTICHYCGHKATMNLRINNGKPVYEGEQVQIGGDESYYPVCRYHYFHPNVVR
752691..753776                     PHAGE_Pseudo_phiPsa374_NC_023601: hypothetical protein; LBA0767; phage(gi589287220)     1.02e-10            LactobacillusacidophilusNCFMMDKVMAQLESLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKENKKEIEDNKEIISNETDSDLIEMAKEENAELEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGAAGGDEASLFAGDLLRMYEKYAERQNWNVSMIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAQYDAKRKNAVGTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRVMNGELDEIIDALILYNQTKQLEELADNA
763975..763988                     attR                                                                                 N/A                 AAGAAGATAAGCAA

#### region 2 ####
863952..863969                     attL                                                                                 N/A                 TAAAAACAAAATAAAAAG
complement(870710..871660)         PHAGE_Lactob_Sha1_NC_019489: phage integrase; LBA0893; phage(gi418489824)            1.55e-84            LactobacillusacidophilusNCFMMEVAKDQQQISDANPVFADYFKSWYGTYKIPGKSRTTVVRYETIYKKLNAYYGKAKLAKVTRKSYQIFMNEYGKKHAKDTVYKTNGSIRSCVRDGVADGIIQKDFTQKINLTWNSERTRKIDYLNYEEIQSLKNSLLHNIKHTYISRYMILTALYTGMRPGEIAVLTWSDIDFKNQTININKSYNHDKGRVDNYDSSEIDKSTKNTNSVRIIKVDKKFLDILSQLKQNDHEKIFIGKDGTIPTSNAVNKVWRKQLEKLNIDKPSFHFHSVRHTHVALLPFKGVPLYAISKRLGHANMSTTAKKYAYMLDELKQQVR
complement(871880..872080)         hypothetical protein; LBA0894                                                        N/A                 LactobacillusacidophilusNCFMMGPMRTLTVAIDWILIILFVISIILLIYALVKKNKKMAKYAGIAAAIIFILLFIAMRFALTVKPGQ
complement(872083..872736)         PHAGE_Bacill_vB_BhaS_171_NC_030904: recombination protein; LBA0895; phage(gi100049)     1.07e-07            LactobacillusacidophilusNCFMMFTYLLITIFGIGLLIWAFWYDKNMFKPEKKKNGKMTKPLHTRWYFWVLVVFSIVGGIGNMLGLGADDDDSDNNSAQTVQTSKKAKQSKAENHSKAKKSGTKKSKEISDEEKEAAALLLLRKNFKGKAKVWYDSDNKAFMIQPTGTEFKEELLDIIATQDTSDWKDLTDSMDSLSRSLYKNLQLADFVSIVNPDNPDKVLYSSLNGHSEYDFLKDDE
complement(873265..873603)         PHAGE_Lactob_Lj965_NC_005355: putative repressor; LBA0896; phage(gi41179224)         4.62e-34            LactobacillusacidophilusNCFMMTNQTNLAQKITNYREAQDMTQAELADKSGIERTALNKIEKGTRKVSSDELKAIALALNISADTLLDLNGSELTWADLGMPYGGEIPDELKDTYADIARGYFKRHPEYLNKN
873767..873970                     PHAGE_Lactob_Lj965_NC_005355: putative cro repressor; LBA0897; phage(gi41179225)     8.27e-23            LactobacillusacidophilusNCFMMKKEINLALIRERRLKRGFSNEDMAKSLGLASSDKYFRREHGIYKFQASELPALSKKLGIPLEKFFI
874230..875621                     putative transporter protein; LBA0899                                                N/A                 LactobacillusacidophilusNCFMMGKKNKVPQLSRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMFVGLILYIVMRALGEMLYINPGTGSFADYATEYVHPLAGYLAEWANVFEYIVVGMSEVVAATEYLKYWWPNISALWSGVIIIAFLLLANLASAKAYASLEFWFAMIKVITIILMIILGFIVIFFGVGNGGKPIGFSNLWAHGGFFTGGVKGFFFSMSIIVGSYEGIELLGISAGEVANPQKAIVKSVKSVLLRILIFYVGAIFVIVTIYPWNKLSSLGSPFVTTFAKVGITAAASIINFVVLTAALSGANSGIYSSSRMLFKLSHDNEAPSVFKHISKRIVPDRAIMGISGGIFIGFILNIIASQFNHSASDLFVIVFSSSVLPGMIPWFVILLAELRFRRHNQDMMKDHPFKLPLYPFSNYFAFLMLLVIVIFMFINPDTRISVITGALVLIVATIVYLVRHKDEFSKNN
875749..876705                     PHAGE_Staphy_SPbeta_like_NC_029119: thymidylate synthase; LBA0901; phage(gi985761245)     6.71e-144           LactobacillusacidophilusNCFMMAILEQPYLDLINKIMIEGHDKNDRTGTGTRSYFGAQMRFDLSKGFPILTTKKVPFGLIKSELLWFLRGDTNIRFLLEHKNHIWDEWAFKNWVNSDEYTGPDMTDFGLRSQSDPEFNKIYQAELKKFDRRILDDENFAKKYGNLGDVYGAQWRHWQKRDGSFIDQIENVIEQIKNNPDSRRMIVTAWNPEDVPTSALPPCHVMFQFYVVDGKISVQLYQRSGDMFLGVPFNIASYALLLNMIARETGLQVGEFIHTLGDAHIYSNHFSQVKEMLSRKPYESPQLWLNPEKKHIEDFDMQDIKLVDYKHHGTIKAPVAV
876715..877218                     PHAGE_Bacill_G_NC_023719: gp125; LBA0902; phage(gi593777584)                         2.23e-28            LactobacillusacidophilusNCFMMIEYVWAEDKEKNIGLNGHLPWYLPADMKHFKEVTINHPIIMGRKTFESFPNLLPKRKHIVLTHNEELKNKYQNNDQVTILPTVEDLHNFVAEHQDERMCAIGGVSIFNALMDQVEVLEKTEIDAIFEADTKMPEIDYSRFNLVAKKHYEPDEKNKYPYTFLTYKLK
890013..890030                     attR                                                                                 N/A                 TAAAAACAAAATAAAAAG

#### region 3 ####
complement(1754392..1755276)       PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; LBA1719; phage(gi100148)         7.89e-97            LactobacillusacidophilusNCFMMKVRKAIIPAAGLGTRFLPATKAMPKEMLPIVDKPTIQFIVEEAKAAGIEDILIVTGKNKRAIENHFDSNPELEQDLEATGKVKLLKLTQDITNLGINLYYTRQPHPAGLGDAIYRARSFVGEEPFVVMLGDDLMKDKITLTKQLMNDYDKIHASTIAVMQVPHKEVSKYGVIDPEGKVDKDLYNVKKFVEKPAVDKAPSDFAIIGRYLLTPEIFEILENQKPGRGGEIQLTDAIDTLNQTQRVFAHVFRGQRFDVGNKEGYLETSIQYGLRHPETRDALKKYIIDLGKKLEKE
1755431..1756573                   UDP-N-acetyl glucosamine-2-epimerase; LBA1720                                        N/A                 LactobacillusacidophilusNCFMMNKIKVMTVFGTRPEAIKMAPLVLKLKQDERFEEVTVVSAQHREMLDQVLDIFKIKPDYDFNIMHKNQTLEEITSKVMIDLAKVIKKEKPDIVLVHGDTTTSFAAGLATFYEQTTLGHVEAGLRTWNKYSPFPEEMNRQMTDDLADLYFAPTEVSKANLLKENHPADNIFVTGNTAIDALHETVQKDYHHDVLDEIKPGNKVILVTMHRRENQGEPMRRVFKVMRQVIDSHDDVEIIYPVHLSPKVQQVANEVLGGDPRIHLIEPLDVVDFHNLAKRSYFIMTDSGGVQEEAPSLGKPVLVLRDTTERPEGVKAGTLKLVGTEVDKVRESMLELLENKEAYDKMANAKNPYGDGHASDRIMNAIYYYFNRDTAIKPNDFK
complement(1756648..1757007)       PHAGE_Paenib_Leyra_NC_048692: hypothetical protein; LBA1721; phage(gi100029)         2.48e-19            LactobacillusacidophilusNCFMMLPQVIVESHINSHALNGLVFHTDRGWQYQHQAYQHELAVRGIKQSMSRKGCSPDDGLMEGFFCILKREMFYGQESKYASLDELEQAIRKYINYYNTERTKDKLKELTPIEYRNKFLVA
complement(1756970..1757710)       PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; LBA1722; phage(gi17546156)     3.30e-06            LactobacillusacidophilusNCFMMSKLTKQDKIYIFEEWTLENRGGTYLGKKYGIRRENVNYLIKLIKIHGFSILDKPYTNYSKEYKERAIKRVLFENETVNAVALDLGLTSRSILSNWSHSYKENGYNVVIKKKGRLTHEQEKVDRTRAAQERKHRAASPEFKAYCRKRIYKKIGCLGSKEKKPTKTEIAYAITELRHELGLGVKKIIEIINSNKDLPHISRSNYYDVYTREDKDRVHYEDIMTRIREIYDEIKNRYVAPGYRRISHK
1757980..1759206                   PHAGE_Bacill_vB_BceS_MY192_NC_048633: minor tail protein; LBA1723; phage(gi100055)     2.98e-31            LactobacillusacidophilusNCFMMQVTFGIDVSKSTSTVCELIGESKNELTITNDRPGFVQLLKELSAFSKHPQIIFEATGVYSRRLQTFLEDYDYDYIILNPLKAKKKMDLGLRYNKTDKTDAYHLALIQKLHHHPVNQIQSQTYKQLNSLSRFYDQLTSDLVTAKNRLHQALQSTFPEIETLFCSAKGKNYWQIVLHYPHCDLVRKNDKTQIINWLMQLKGIGFKHAQKTTDKLIELANKAYPVVSCNSVEAEQVQYYAQSLLNLSDQREQLIERMVKLAKSLPNHDLENLESIPGFAQTTAVRVLAELGDLRRFSNPNKINAFIGIDPGRYQSGEMDSNLSISKHGNAVARKLLYRAIGQIDNASKTNPCHIADYYESKKLSSQTKGFKKIAIASIHKLIRTIYALIIKDQLYDYNVATHNQKDFSRN
complement(1759462..1760895)       oligosaccharide repeat unit transporter; LBA1724                                     N/A                 LactobacillusacidophilusNCFMMKVVRNYLYNVGYQVLAIIVPLITSAYVSRVLRPEGVGANAFTNSIIQYFILFASMGIGYYGNRQIAYVREDSHKMAQTFWEIQIVKTMMTLLSIIAFEIFMMFYTRQPEYMIAQSINLVAVAFDISWFYEGIEDFKVTVLKNSFVKLISMAAIFLLIKGPYDVTLYIVVLAVSTLLGNLTLWPNIKKDLPKININILNPWRHFLPMAELFIPQIATQVYVQLNKTMLGGMVSETSAGYYQYSDNLVKLILALVTATGTVMLPHVANAVSKGNMREVNQMLYKSFDFVSAVSYPMMFGLAAISLTLAPKYYGPGYDPVGPAMMIESIVILMIAWSNVLGVQYLLPINHQRDFTVSVTVGAVVNVILNIPLIHNWGLDGAMWSTVISEISVTLYQLWAVKGLLNYRQLFLNSWKYLLSGIIMFVLVFWMNQHFQDSWLMMGLEIIIGVIIYGVMIIFFKAPIIDQAKKIVNDKLKNVK
complement(1760901..1761413)       PHAGE_Rhizob_vB_RleM_P10VF_NC_025429: UDP-galactopyranose mutase; LBA1725; phage(gi712912949)     2.87e-29            LactobacillusacidophilusNCFMMLGDPDITVKLNTDFFDNKDDYLKNFDKIIYTGMIDKFFDYKLGELEYRSLRFETEEKDVNNYQGNAVINYTEAEIPYTRVIEHKHFEFGKGDNDKTIITREYPADWKRGDEPYYPINNKRNNDLYAKYAELAKKQDKVIFGGRLGQYKYYNMDQVIAAALDTVNSEFGD
complement(1761612..1762013)       PHAGE_Rhizob_vB_RleM_P10VF_NC_025429: UDP-galactopyranose mutase; LBA1726; phage(gi712912949)     9.53e-33            LactobacillusacidophilusNCFMMKTYLVVGSGLFAAVFAHEAAKRGNKVKVIEKRDHIAGNIYTKEIDGIQVHKYGAHIFHTSNKKVWDYVHQFADFNRYTNSPVANYKGHMYNLPFNMNTFSEMWGVRTPQEAMAKINEQRQEMAGKEPQNLEE
