gi|00000000|ref|CP000671.1|  Haemophilus influenzae PittEE, complete genome. 1813033, gc%: 38.04%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
958225..958238                     attL                                                                                 N/A                 TTTCACCGCACTTT
958659..958841                     PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; CGSHiEE_04590; phage(gi109289984)     5.88e-07            MAMTRAEINAKSDKKRGVRLQSYKLHEDIIKLLAELSEKTGKSKTAIVTEGILAMEKNYK
complement(958885..959334)         PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; CGSHiEE_04595; phage(gi100035)     1.71e-21            MIFTVGVETPENENQAYGMIVPALCQLDYGCFSGADDVDDLLPMVTEAITMMLEAMVEDGFDLTTLKDKGVTHYKADPEYADFDTWLLVDVDISEYLGKKQRINVSLPEYLLTRIDRRVAAMGNYYKDRSHFLANAAHRELHAHSDKEM
complement(959366..959548)         PHAGE_Salmon_SEN22_NC_028696: hypothetical protein; CGSHiEE_04600; phage(gi966201332)     1.10e-06            MHSGDLIKELKANGCYFVRHGKGDHQIWFSPKTGKRFPVPHPKQDLAIGTLKSIKKSAGL
complement(959705..960316)         PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; CGSHiEE_04605; phage(gi100047)     3.51e-58            MNQLLTMTKENASILTMSNREIAEITHKEHKNVLRVIRDLIEQNLVAQIEPLKFEYRNQWFDYYELNKRDTFVVDRWQALENRQKPTALIPQSFSEALMLAAQLQAEKERNAPKVAFVDHYVEVGTSKSFRETAKILKIPERALVNRLVEDKYLYRQSGVLLPYQSAHTKDLFTVKTGTAEHGHNYTQTRITSKGIELSVLRA
complement(960364..960660)         PHAGE_Haemop_Aaphi23_NC_004827: hypothetical protein; CGSHiEE_04610; phage(gi31544012)     9.66e-40            MARNKLTRSARVLSDQVIDKYYKQKQYEVAEGMETTPSTLSRFISNEEFTQTFNFIAACQFGVFDTDTHIAVEKSEFEMLLLASQGFDKRLREKYLGE
complement(960681..960887)         PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956: Cro repressor; CGSHiEE_04615; phage(gi971760541)     8.50e-26            MNNLSQIRGQLGITQRQLANHIGWSQPRIANYETGLRSPSLSVAQKIVQTLNSLGAKVCIEDVFPPQS
961018..961674                     PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: CI repressor; CGSHiEE_04620; phage(gi971749642)     5.01e-85            MATLGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGNRTPDLEDISIISKALNILPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIASENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYRELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVETL
961742..962671                     hypothetical protein; CGSHiEE_04625                                                  N/A                 MNKQVKLRAFSISQDKFSGTVTVSDLLKEVLANSKSSNERRMRLSEDDPKKEEDLISHFNIEKENFIFATMLRIAPGDNVQHIDEALFNKANFSISDLLNAKLNTSAIYKDHYYFALSNNFLVTNLYSRTTITRLQTYLNWLLKELIDLSPVIEIKEEYDLASIKSFVIQDPQIKNKSHIDETQSDNSTILSRLKDLAFDQVKALFKDATDLQDVDLSQIVSAKLLIQLKNPTKKSPEEVKKAFSAVLKPVSDLDNISFKTRRGASVTGSQLEKSKMVEVDTTETGKLNEQTLLQQMEIFIKDLENEQK
962652..963209                     hypothetical protein; CGSHiEE_04630                                                  N/A                 MKTNKNKMAMLTIGILLTISISSLFFPEYNDEKMGNLVNTIYTISGIMFSIGMGVICTFNPSGIKNENIYSIIENNIFKVRSSFLFYFALSTILFIAQTIFDLSYRIAIGFDFIDITIILDVKTFTLVMSIIAIIYYIINFQAIQKLNLDIAKRIIQEEKLTKTNALTLLASMSPTFMSKTYQPQ
complement(963630..963800)         PHAGE_Mycoba_Gumball_NC_011290: gp40; CGSHiEE_04635; phage(gi206599745)              2.04e-05            MYFQIFQGVNNQWYWRLKAANHETIAVSEGYTTKQNCLHCIGLVMDTDRKTPIYES
963815..964036                     hypothetical protein; CGSHiEE_04640                                                  N/A                 MQEEMKRYAISYHFDGKRWATDVYAHSFEEAEEKLKAMSQGTVDGEIHLSVYIPENPLSKVSRLITRIAKKFM
964204..964419                     hypothetical protein; CGSHiEE_04645                                                  N/A                 MQLPKVELKQANIPMWIFQNTFASTETQRHVKPLRMIDEVCFEMANIKQTRLKMEEKRLFRGWQCYQQHHN
964451..964603                     PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; CGSHiEE_04650; phage(gi971749635)     3.43e-08            MKAIENGAYHPGLEERACQAISYINRFSDAQTKEELIDNKTGEVYVLVRP
complement(964589..964855)         PHAGE_Staphy_StB20_like_NC_028821: CRISPR-associated endoribonuclease Cas2; CGSHiEE_04655; phage(gi971746517)     3.03e-13            MANLILTYDLRNQRDYKSLIEAIKSYGTYAKLFESVWYIRSRTHTAEQCRDYLLQFIDNDDRLGVFDCSNNDFATMRALNKVSNLWSN
965117..965608                     hypothetical protein; CGSHiEE_04660                                                  N/A                 MTELFIESEYHSIPHQFAEFRVANVDYIIDFSSDNDVIESLFSLDERLVPLLKNRKTYSVKFGVKEYYESTEPSIDLYAPPINHQLKKTDIQHLKEQLETLLYKHYSIYQPECYFFIAERPSLSRMYQKMCDNRHPLMIDFQPIGQLGENSDCFIIKTPNYKE
965612..965704                     hypothetical protein; CGSHiEE_04665                                                  N/A                 MAEAKPSAKELKRQAMLASRLAYQKAKNQS
966042..966293                     PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: antirepressor; CGSHiEE_04670; phage(gi970580044)     2.11e-38            MTHLNLIPVFNGLIQNQPVRLCNARELHAFVESKQQYTDWIKNRINEYGFIQDEDYLVITERTNGRPRKEYHITLDMGKELRN
966646..966864                     PHAGE_Mannhe_phiMHaA1_NC_008201: hypothetical protein; CGSHiEE_04675; phage(gi109289983)     2.69e-05            MRQEYLTEKSQNLITLEDIAIYFGRHYQTVAKIISKLPNFLKPVTVDQQNSRPRYIAGEVVRWGRINAKRIS
complement(966861..967259)         PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; CGSHiEE_04680; phage(gi109289985)        6.68e-46            MRAGEICSLSWDSVNFEKRTAFLPMTKNGTSRTVPLTKNAIAILERLKSEIGDEGLCFDIKSNVLDATFRKLKKLAEREYLHFHDTRREALTRLSKKVDVMTLAKISGHKDISILQNVYYAPDMAEVAELLD
complement(967256..967417)         PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: integrase; CGSHiEE_04685; phage(gi971749621)     2.81e-09            MVGIQLPEKGKPRTQRVTEENINAIVAISGYVDTLKTAKARTAAAMLFAVETQ
complement(967427..967720)         PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; CGSHiEE_04690; phage(gi109289985)        5.79e-12            MELQSQGLQPDTLFSDVIKRYLNEITPTKRGEKHEFNRLNRFLRHPVTDKYISDVSRRDIEDWIAERLESVKSESVRRELSTIGHIFKIALERWGYI
971182..971195                     attR                                                                                 N/A                 TTTCACCGCACTTT

#### region 2 ####
1071576..1071588                   attL                                                                                 N/A                 CATGTTCATCATA
complement(1086458..1086592)       PHAGE_Haemop_SuMu_NC_019455: Mu-like prophage protein gpG; CGSHiEE_05415; phage(gi418489082)     2.05e-06            MIDIEINNAQEVTALLERLAQATAHRAPLMRSIAGSMESAVAQL
complement(1086811..1087002)       PHAGE_Haemop_SuMu_NC_019455: hypothetical protein; CGSHiEE_05420; phage(gi418489083)     8.72e-10            MDKLLGQDWQECYPNTLSQNEKACLKQALLHRFTYSQGESFGLQSYLRDLRIINDYPETSEVN
complement(1087153..1087821)       PHAGE_Haemop_SuMu_NC_019455: MuF; CGSHiEE_05425; phage(gi418489084)                  4.01e-80            MEVERPADKQGNREKTVGFKLPDGTIRVTDKGFDYNVGRLNYKPNLDLYPEKLAHAFAKVEMKGGEFKHDFELLAKHVAEMKQTLSPDGKKLTAEQMLQVRDSLTKNFKFAAGVLSAESKDFLKSKTGTVWLSDDTLIKQFNSRDGQDFGLESYALFPDLFNQPDIVLQDNDRFYFIKNFEKQRILGVIKHLSKFNEIFVLSAREINIKEVEKMKGKLAVIK
complement(1087880..1088113)       PHAGE_Haemop_SuMu_NC_019455: portal protein gp29; CGSHiEE_05430; phage(gi418489080)     3.15e-27            MRHLAQTITQQIILPYLQINVDPNIAPHRIPYFEFDTKEYEDLSVFADAIPKLTGIGVQISESWVRDKLGIPEPQEG
1088113..1088643                   PHAGE_Haemop_HP1_NC_001697: replication protein; CGSHiEE_05435; phage(gi9628613)     1.53e-27            MTKRGDQPICIEYEECEPNKYGEIRKKIVGVKNRFTEKKIITKLKNWVIKSAKSALGSTALNSESTETNKAHRAAWTCVNNCNRSKIEQQANLLMLPIGSPLKPSQIDLLMSHGRLPLNDYRWICCENDEVFIKEEKIPLAQAFGWGESLGDFRVNFMFIISTSSWCWRFWFLKIF
1088583..1088595                   attR                                                                                 N/A                 CATGTTCATCATA
complement(1088751..1089041)       PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; CGSHiEE_05440; phage(gi109289985)        4.35e-26            MASVGAHKFGVSKSATFLTQADAKKWAEMLEKQLESGKYNEIPDITLDELIDKYLKEVTVTKCGKREERIRLLRLSQTPLAAISLQEIGKAHFREW
