gi|169405180|ref|CP000962.1|  Clostridium botulinum A3 str. Loch Maree, complete genome. [asmbl_id: NC_000000].3992906, gc%: 28.31%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2092939..2092951                   attL                                                                                 N/A                 TATCTAATATATA
complement(2101515..2102645)       PHAGE_Clostr_phi3626: putative integrase; CLK_1309; phage(gi20065985)                3e-11               MEVVKVKTEDGKERYFVADDLGLPIEPILKFIRFKDNTNYARNTLRMYCQHLKLYFEYMQQRNLNFQDVTIDDLALFVNWLQNPYESLKVIPSVHVESARSPRTINIIINTVLAFYDYILRHEEYSNNISDRLKRFVSIPSRNFKGFLYGIAYEQKKVTSNILKLKVPKSKPKILNKEEIEMLVRACNNLRDKFLLSLLYETGMRIGEALSLWIEDFDISDMIIDLKDRGQLENNAEIKTVSSPRRIDISQNLADMFMEYIAEYHTEEVETNHIFIKISGNNKYKAMNYIDVDNLFRTLKKKTEIYVTPHMFRHSSLTVLRMAGWQPELLRIRAGHKNIYTTMNTYIHPSDEEITKEFEKTRPNLDLDIYNKGEDN
2102715..2102726                   attL                                                                                 N/A                 AAACTATATATT
complement(2102798..2103802)       general secretion pathway protein; CLK_1310                                          N/A                 MDLFYYKAKDIKGNVLKGACNEKEKVNIYKELREKGYFLLNITNKNVFKIRSEKITLKDCSILCNKLYMLMASGINITDAINIAYEDFHNVHVKNSLYTIRNNILRGDSIYNSFKGFSNIYPKFLLSMIYIGEESGRIQYVLSDLKNFYENKYKFNKEIKNALIYPIMVLITFIIMLYILIHMVVPSLIGIFNELGGSIPKKTLGMITAIKVFNVILGILFISIIFILLGSNFFYKRYKIKYAVDNLKIKTPILGQIYKNIFICNFSNSMNLMIKSGIPINKSLKLLEEVTDNYIFKENIKNLNKNIKDGKSISISLNKCGFSNKILLSMVHKI
complement(2103947..2104681)       general secretion pathway protein E (Type II traffic warden ATPase)(Cholera toxin secretion protein EpsE); CLK_1311     N/A                 MLKKPNGLILVTGPTGSGKSTTLYSMLQYVNNKEKNIITIEEPVEYTIAGINQVNVDYKRELTFLKGLKSILRQDPDIIMVGEIRDEETAKVAVRASITGHLVLSTLHTNGALESIIRLLDMKIEPYILSDALRGIVSQRLVKVICPYCKKAYIPSMEEKNFVNLKEEFLLYKGKGCYKCNNTGYMGRSVIYEYINIDKEKKDLIKNIVKNNNEENFLENSLKENVNKALIQGRTSFREIQRII
complement(2105343..2106218)       hypothetical protein; CLK_1312                                                       N/A                 MKPAKKEILYSIIRYSPDILKGEIINVGLLFHNLKETKVKYFLLDEKSPKIKCIMDNISQVDLYRSYKEILEYYLEKSKDDMSGVVGNTHIGSYFQEDFIKKMYSKFEKKEMFLSMPNVAYTSNEDKLFETILKRYVGNNHTNTKKANTLTAKKYLKKIFAENEVLNKRVKSDLKVKPIKNLDDLEVKIDFTFKNGMWNYMQTIPRIDTKSKNTEWFSQTQLLLDARFEDTKIHLIYKESDILDDEGTYNLLRYLQNQYCNLEIHNIDKESSVKKLCNYIETEGEILEKIG
complement(2106187..2107176)       hypothetical protein; CLK_1313                                                       N/A                 MKEIEIETFLKPMGEGVTRPALVIGNDYNEYILKNEDVDEDGKLVKYNCMFVNELLAFQIGKFLDVPMPEAVIALIDSTLIEGDPTIRFAYRFKAGKYFGTEKLKQIENNYIDNYRELANMNKPYISKSWNKFFKNIENKKDIPKILAFDLLIANFDRYINTGNILVNREKKDMRNIYAIDHGHAFFGPIWNEYKIDCLGIKQITEEYVAWYCTIILNEIRRSGPFGSGTIFGVLENYVNLEDVQNHSFSDIIIKMRSINENIIREWCNNIPNDWYIDKEMQVIYYTNFLMKQKDTVEQIIQMLANNNAFTNYRGGILRYETCEERNLI
complement(2107406..2108230)       PHAGE_Clostr_phiCTP1: endolysin; CLK_1314; phage(gi304360691)                        4e-48               MKGVDISNNNQRPIDFNKIKASGVEIVYLKATEGTTFKDPYCNEYYNRAKAAGLKVGLYHFLVGTSAPESQAENFYSMHKGKTLEVLSNLDIERNNFNVMDYAIRFIKRFKELSGRNISIYAGPYFINDNLDSRLKQYPLWVAHYGVNKPMANKVWGSSYAGHQFTEHGTIPGIPGICDVNNFNTSILEENKKEEKKVKNLVVYNNIADARAAEYLADKLNCPTIWGARSFDYSVVENVIGVGGKKEQYTSYLKTLISGNNRYYTMQAVLNYNK
complement(2108270..2108689)       PHAGE_Bacill_WBeta: phage holin; CLK_1315; phage(gi85701395)                         4e-26               MKWDKILSTIVAGLGACANYFFGGLDMALKTLLLLMVLDYITGLICAGRDKTLSSSAGFKGLAKKIIILIIVGVGVSVDNATGANGIVRSMVIFFYASMEGISILENATKAGVPVPEKLKEMLVQLREGNKKEIKEQSK
complement(2108770..2108910)       hypothetical protein; CLK_1316                                                       N/A                 MSNGFNFWEMCFNFGAVGEDMLKRAVDLDDLTKEEYKTITGQEYLQ
complement(2108912..2109106)       hypothetical protein; CLK_1317                                                       N/A                 MGVVINHSVINKIQEEGKNNLAKNMLLKELASLRLENKEKDLIAKNLMQQLAEIRLNLIEKEGN
complement(2109126..2111795)       PHAGE_Clostr_phi8074_B1: hypothetical protein; CLK_1318; phage(gi431810375)          2e-119              MEYIGIEKFGSFLDNGAAYTIPDRPWFTDNYPGSLSERGKGNIRAIADRHEISLGNTLSNENSQIPWIHLKDGLKHIYVCKQVLATNISWDYLNERNMIYGTPVTIDGKQYKLRVLTGGVERNPDKPGMVPTDNEWDTIIQNTANITGLPKPTTEDLTEANTYGQLDGKHNQHWNWWGINTICQETRTLTSSKITRGYSSAASFTSYDAIALNSACGWRPVLEYIETDPPEKPTIVKPTGTETKPSVTNVQPIQIETIFNNPDGTFKHMDYEVWDLDLNKRVANTRVFITNDVLTPKLELGHRYKLIVSHTNTADQVSPQATSYFMRGILNKYKLSEPVTQKQYDKLTAYTSGDDLIMKPQQFPETENSVIRLVPQTMNNLTAGETTTKELPYSASTKALVIGDRLIKNKEVYTVAEVKQGNKPINVNSTIYKILNKDKPMISWTYRSGTKSYTYNGYAYVSYLDLPYFQITGIPLQGGETKYIWTGTTENLRNMVTTGKGNMMYTIKSTEKETNLIATNLDTGLAKQTLLPRDNDQIALSAVVDSRTNRLVLSAKERCKVTEGSSTTYKYTLMCYWFDVSDLDNIKMVQKSTILANCGYTELGNPTIEDMQDIYKGNICIYYPRVTEDKCELKEHRYDLTSLEGVSTLGIVSDVTDALDTEIVAKHIKDKQGESILVVSMKYPSLASSGNIRTLTMKKGGTLYSNTLSSGTAAVRTHKITYSHEQGIGLVYATSVGNIYKRFTKDYTEWGNIEFVFSVTPRAGLEQVFETVDYYPESYGKYPGLAILEYTEATKTDKLVLRADYTNDKEQASKIILDKPITAQAGEKIKYLDYDLEVKAGEETATIKPTDITEDYYEYDAQFTKEEAQRDINIKGRNTKLTTLYYYNY
complement(2111797..2113161)       PHAGE_Clostr_phiCD38_2: tail fiber protein; CLK_1319; phage(gi333798127)             4e-15               MDKPFNLLIDTKRTGFNAVRGLKQGDNNSVLNIILVQNSVPFDLTGLTVRINYKRPDNKLFLQMVDIENATEGKIKINILTKVLENAGEVKADLSLFDKDNRKITSATFSMFVDSSVYRNDYLEPEDLDLIQSIWVEEDKRIKQENTRKLNEENRVSNESIREKNEKDRTDKEHLRELVEDQRQDNEAGREKSEATRIENEKTRLENENQRKENEENRIAKESERVDAEEERKANESARQQGYTEIKNTIDDFSVCEEYDPKKEYKKFNRVVYNGSCCECLKDCTNIYPVNKEYWICIATKGKDGLGSGNMHTDDYDKNQNGIVDKAESITDGFITYNVTDINNKLNTLNANDKNAREEIMDIKLKLKEKLAVDFINKSGIGFFDTFETNDYIESTTAKWNKTDTTVDFGSQESEQLVYQAVDNSNEIQLVGDQLSVGDKIKVGYKIITIEEVL
complement(2113177..2114859)       PHAGE_Lister_LP_030_2: phage capsid and scaffold; CLK_1320; phage(gi514051949)       2e-44               MEVLVVITLYNELETNFEHNGVGILKDCLKCETHRDLSGLFSLELEYPIHSKMANKIEKFMIIKAPTPTGLQLFRIQERERDLGTIKINATHIFFDLVRNFIADTNIIGKTRIQAVQQVLDKTLTPHKFIVEGDYGGKQNNCRIVRYNPVKALLGDEDNTIRNRWGLELDFDNYKIIAKEKIGKETGVLIAYKKNMLGITEKLDMSEVATRIVPQGAEGLLLPEYYIDSPNIGAYYQPLIAHVKFDEIKVKEQPTEGEEPTEDDEGFETKEEAHAEMRKQVNRLFTETKIDIPYFNYEVEFEELGKTEEYKQFKSLENINIGDTVTVRHGELGLDLKGRIIAYDYNCLLKKYIKIELGMSKKDLTLTIKQAMAEIQFTKEKIEMEVSNLDKSLSSKLEITEKHIMTEVKDVNKSLNSKIEQTAETITFTVNNQISNVNSKIEQQADKINLVVDGGGSIKAAQIALAIANDSSSINMLADTINLIPNNGVINFSNGTSIDTRDSSGQNRDNFIRLRADKYHYVCVDANDGAISLFFPGGGGSHAYWTFKKDGLYKDGVKVL
complement(2114844..2115521)       PHAGE_Clostr_phiCD38_2: tail component protein; CLK_1321; phage(gi333798124)         4e-32               METGFIWKGTHSNEKGLKIISLPNITTPEKREEKIIIPGRDGYLTQSDGGYEGEVKPVEFDIKHDNFDEIKTWLNGSGEVIFSNEPDRYYKARIINKLDLARVLEKFHSGIIQFDCQPFGYLQKEVMQIITPTTIYNQTNKDSEPYIRVYGSGTITLNINDEVIKFTNVENYIEIDSELMECYKNNTPLNNHMYGEFPIFQIGENKISWTGNVSKIEITPRWRCS
complement(2115521..2118190)       PHAGE_Strept_phi3396: putative phage-related tail tape measure protein; CLK_1322; phage(gi126011107)     1e-77               MADGRIIIDTQIDNKGAEKGINELNGIANKGLKGIGIAIAGVGTAMGTMGGFALKTGVDFESAFTGVKKTVDGTDQQFTQLEKAIRNMAKSMPESASEIAGVAEAAGQLGIKVENIEGFTKSMVMLGDSTNMSSEEAATALARLANITQMPQTQFDRLGSVIVALGNNLATTESEITAMGLRLAGAGHQVGMSEAQIMSFAGALSSVGIEAEAGGSAFSKVMVDMQLAVEKGGEGLNQFAKVAGMSSSEFQKAFKEDAAGAIIAFIQGLGKCQESGQSAIGVLDDMGITEVRMRDALLRAAGAGNIFTDALELGTKAWEENTALANEANQRYDTTESKMKMIKNSVVDLGIAMFDKFREPFRESLDTVMESLSNLSDSLANGSLGESVDRLAEGFGNFISRVAEGVENWLPKIINALAWIMDNASFIASGIAGIGAALLTLKIASIVGTIAEKFKLLYLEIATGTPIMEAFNIVLGLNPIILITAAVIGFIAALVILWNTNEGFRNAVIGAWNAISGAAQAVWGAIVDFFTVDIPAAWQSLLDFFSGVPGWFADLWATIQQAFVDGWNTIVNFFTQTIPQWIDSVGKWFNELPHLIGYALGYALGTIVKWGIDTWNYLSTNVPIWINNVVNFFATLPGRIWTWLVNTINRIVNWGQQTYTNMVNAATRAINATIQWFSQLPGRIWTWLVNTISRVAQFAVNLANTARTAGANMVTNIISAVANLPSQFVNIGKNIVQGVWNGITGMAGWIRDRVNGFFSGIVDGAKDALGIHSPSRVFRDQVGKYMAQGVGVGFENETENIKKSMQKDLSNLTAKMKTTVDFETSKTSRAMTAGVNKTINNTNETVTNNDNGLTLKVDKFINNTKQDIKDIAEELEFYRKRNSLATGGV
complement(2118240..2118392)       hypothetical protein; CLK_1323                                                       N/A                 MINIEEVRCPNCNQMLLKADYIKGEIKCIRCKKIIELEINQRTEPNHTIE
complement(2118422..2118907)       hypothetical protein; CLK_1324                                                       N/A                 MGLFSRKNKEISPINLTYIDGIDRYIKNTAVSLNLDDKKECLVIKASKNNYPVVNINFDKLVAIDIIHEKDIIETNKSSVGRAMVGGVLLGSLGAVIGGISGVGTKKSSKLRTFLVINYKSKDEEIKVISFEIENITLNMPKFINKLRENISSDNIEEIYL
complement(2118964..2119557)       PHAGE_Clostr_phiCD38_2: hypothetical protein; CLK_1325; phage(gi333798121)           4e-68               MNMLIDLVPNTIEIEGKNYNINSDFRTSILFELLMQDNSISEEDKLIQALQLYYPVIPPNINLAVDKMLWFYRCGKDITPSKGTGKGKSTQIYLFNFDDDYIYSAFLDQYGIDLQDIEYLHWWKFKAMFKALKEDNEIVKIMGYRSMDLSKIKDKEEKNYYRRMQELYKIPIAKDEKDKLEEINNILLNGGDVGNLL
complement(2119557..2119901)       PHAGE_Clostr_phiCD38_2: hypothetical protein; CLK_1326; phage(gi333798120)           7e-17               MKINGTELKDLDILDLEVAENYEKAIKGIEGISEKVQGMTVAESIRAQCNAIFKIFNDLFGEGTDKKVFGNKVNLLTCLKAFDELVTQVNAPNEEIEKIANKYSPNRAQRRKKK
complement(2119901..2120410)       PHAGE_Clostr_phiCD38_2: hypothetical protein; CLK_1327; phage(gi333798119)           4e-22               MAVRKRKIQANYLEVAGAFELLGTGFTELNESPSAQTTSKRYINQSSASQSITGYEWATEFTADQIASEKAIEHIRNIGEMQLTGTDTETDYLIVDLDKPADTTGFRARKFKVAISIDSFPDNDGELGIEGSFLGISDPTLGTFDTSTKKFVEGFTPKTEGTTIVEEGK
complement(2120411..2120845)       PHAGE_Clostr_phiCD38_2: hypothetical protein; CLK_1328; phage(gi333798118)           9e-38               MIIDSLRNYIRKCPYLYTFNNAIRVNVNYLEPSADTYSIEEIPIEPIIKKYVNGDSVRQYAFIFTSREPYGADVLQNIDNSGFYEKFADWIEQNNNNDILPVLENNLEPLEIKVTSTGYAFAVTEDTAQFQIQLKLKYFKKGMI
complement(2120842..2121186)       PHAGE_Clostr_phiCD38_2: hypothetical protein; CLK_1329; phage(gi333798117)           3e-19               MATTVRIQIDKTEKILLKRYLNKNGQAQIKFTQEVAKECNNYVPFLTGRLKDMSVELKIDKLIYNAPYAAKQYYTNKGGNRGALRGKYWDKRMWSDKGDRIVQTIADFVGGRRK
complement(2121186..2121596)       PHAGE_Clostr_phiCD38_2: hypothetical protein; CLK_1330; phage(gi333798116)           1e-23               MGVLFKNADITIYNKWYDSINDIDKYQRTVIKGVNWQGKRNGTVSDKGLLLADSTLIFVDKLDNYVSPKKFLKLYNEEKSNYFTFAPGDKIVKGEVEFEITGIKPYRIGDLESEFDDVIDIKSVNILTDHMEVEGV
complement(2121598..2121858)       conserved hypothetical protein; CLK_1331                                             N/A                 MTTEQRKAVLVIRNYLNKDLKDNYILENYDLAVEQLINNAAKLENIKTPGVKSMSEGNQSISFDSNPWSITEDIKALLPTPYVRMW
complement(2121904..2122875)       PHAGE_Entero_phiFL3A: coat protein; CLK_1332; phage(gi281416261)                     2e-53               MTITKLGDMIIPSNFAAYTAEQAVAKNKFFKGGIIASNPQLASLLEVGGKTINMPFVKPLTGDSEVPSETNDMGIGNISTSEDIARRQLRVKAWGENQLASLLSGDNVMDRISDAVSDYWSAELSKILISTCTGVFAKLTNKVNDITVKTGNAALLNPNDAIDTKYIIGDSADAITAIAIHSAVYAYMLKMDQITNVPTSDGKGVIQKYGPLNATVLVDDSVPYDSTTKVGAMYLYGPGAFGFVESNNGIEAAEITRNPLKGLGENILISRKQFVLHPLGVQWNEPTSSITSPANSDLETATRWTKVKEDKNIYLAQFKFKIA
complement(2122895..2123527)       PHAGE_Deep_s_D6E: scaffold protein; CLK_1333; phage(gi423262331)                     8e-26               MLKKDLLELIKDIEDDKDIDEILATKFGGLEVFKQKINTDKDFKSYMDSEKDRHYNKALDTWKANNLQSLIDEKIKELYPEDDPKDLELKKLQQEMENMKKEKIKEQLTNKALKIATEKGLPSQLVDYFIGQDEETTNKNLETLEKVFTEKLETTVKERLKDNSYTPPSGGGGGDINPYAKESFSLTRQAELEKNDPEKAKTLRDLANKI
complement(2123796..2124404)       hypothetical protein; CLK_1334                                                       N/A                 MKFKMKPVAILFMALLLSISVPLTAFASTSTGNSLVNVVVSDSDTKTIIAQVPKEHVAEYKEKLKNPDFKQEQINMMNGSTRTLPARALPEGKIITQKYLDRSDVKRAYEAVQPGAFESIIVDLGAGAALGQIMKALNASNAWTLTATVVAWAVEYIRVKPQDWWTQSYIMLFENRISCVRMSHIENLKPTYPAAWLILERL
complement(2124613..2125335)       PHAGE_Lactob_prophage_Lj965: putative minor head protein; CLK_1335; phage(gi41179242)     9e-11               MTREEEFSQGLYDEANEQLKEVYKEQKQNRDELLREIALIMLTYTIIDGLMSLKSKNKRNEYKSLSKLITTATQGQKATQTRVINNILGNTVKNTFDFYSYNANLKDVKKIIENNFKGKHFSTRVWDNEQKVAKHLHKQVKNFLDGKINVNQIKKDIEKTYNNNAYEARRLVETEVNRCCSNVFDRFCKETGVKKVRYNATLDKRLCSDCAQYHDKVFDFDKKIETPRHPLCRCFYIVEE
complement(2125335..2126603)       PHAGE_Staphy_SpaA1: phage portal protein, SPP1; CLK_1336; phage(gi399498867)         1e-38               MIKIDINLLKKAYEEYQNNLQSYAKMYVYYKGNTDAMANYKMVTERSNNKTPVNYIKKFIKEEVSYSVGNDVNYISKSGNENIVNDIDYYLDHWSEGHDSNLAKNMLIYSLAYELYYVDKEGQFCSKVIPPTQGYAAIDDFGNISFFMHSYKLKFDDTTYIDVYTDKEILHFNDKFEKINKPTKHIFGAVPVGLAKLSEEGKDDTLFKDLKGLQDAYETNLSDISNEISDFRNAYMVLTGVSINEDDIPAMKKLGVMQIKDKNGTAAWLIKNINDTFIQNTLNTLEDKMYQLSSHINHNEKMQSNLSSLALRARLIALEEKCKLNQKSIADCIKTRLKFLFIYLKVIKNIEYDFRDIKIKFTPNIPQDDLMTAQVISQLGDKLSTETGLSLLSFIENPKNEIKKLKDENPIDLDNVDFGADE
complement(2126607..2128403)       PHAGE_Pseudo_MP38: hypothetical protein PPMP38_gp28; CLK_1337; phage(gi215479952)     2e-15               MIYFDNLEFDIQIKYEVYLLNKYLIKHYDSETSKALLMANNNNLDKLARALGEIDIEFFCLYFMSDIFVVKGLSEDNTIPNDHKPNVARQLSKGHYELWNIANDIFVKDKYDKVAIIEPRGFAKTTIFDMAVSVWLHCYEKSLFTLLGAKTDSDATQFLDSIKKVFNDNKKIIKCFGKLINIKVIKSNGERYTVNSNEVEFTNGTYIKTVGSGTSVRGNNWGGIRPTVFIGDDFQDEKNILTDAAREKQYSKWTKEIEEVGDKAVFRNGKKIKSATKIIAIGTVLHIDCLMSKLSRNNDYFTILRRAIILGPGQTVEDIFESTLWQQCHDIYFDEKLNKDERKAKAKQFYEDHKSEMQFPVWWPEKWDCFNDLAVKYWEDRKAFMSELMNDASSIGEKWFKFVGTQTKAEIGNHDFTKTMLCVDPASTTNKKSDFTAAIVGSKATNDFTYIRDLIMKKLSFEQYCKEVVEMLERNLDVTHINIEKNTYQGADVVKIKELIEKSPILKDKQYEWINEMQRKNKDEKISTVVDPINNGQIIICSDCEDSKAAIKQIKDFQGQLYTIHDDMIDCISELEIKIKTIETIGEVTILDRRKFGL
complement(2128486..2129529)       hypothetical protein; CLK_1338                                                       N/A                 MKSNELQKDLIKIIVDDFGAKLTKPEFNQYVTKLRDYFIKYIIEERKYTGKVLDLFKFDLGKTDIINSVIYYVVENENVKSKSAIDDFLIALNMLFEEVINDKYFNQNLNNLQPFSKLSSEIARKIEKDRIKDLKEKETRPAISNEEYIIIVEYLNNMILNSLKAHEVKIIIKLLLLYGFSFDRIIELKTKDYCSEKGTLSIVYGNITNRLNFILELPYELNKLMKSYLEIRNKRYPNAENLFVTTEGTTITHGFLTYTLDNIKKEYDLQKSKSHDNKNTFTNTGLAKYAVIQMILEGMNQSIILDLTGFKEEQFSYCQDYVNELKNLNRNRYVNHIIRGISTYDDI
complement(2129616..2130278)       PHAGE_Clostr_phiCD38_2: recombinase/resolvase; CLK_1339; phage(gi333798162)          4e-09               MLYFAYHRTSTEDQHLDRGLKEINEFIANHNIELVGEIYTDQCTGKNFDRPQYKDLMKAMDLASQINPNEKISLVVTELDRLGRNKQLTLKEIRKMQDNGIRLMVLEIPTTLIELPKDSSIATMIMETINNMLIEMYASFAQAELEKKEKRQREGIAAKKARGEWEDYGRPRALEFDKFSKEYKRVLDGSIKPVECMKLLGITKPTYYRYRKEYEENKLV
complement(2130525..2130938)       DNA-binding protein; CLK_1340                                                        N/A                 MDNKELSQQQLKAIELLLKGTSINDIATITGVSRQTISTWKNKNEVFKAELDKSLQALKSEVNNKILLNIEPLVDKLVRIALKSNSDKTSLDAIIYAINRLCGTPTNKTQDMTSDKDNDKEINIDALLSEIKEDNNN
complement(2131101..2131544)       PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp70; CLK_1341; phage(gi209901307)     2e-15               MEENKFKKTEYHLYNYKDIDILNQLADIKIKKLKNDINIKAIEYEERTSKTNKFNSEVENEVIRREEYIQIELELLQQEKENRINEKELINKVMELLEYDEKKLVELRYFSKPTKSWTSIAQELNQSVDNCIKVRRKIISRISELLF
complement(2131832..2134423)       PHAGE_Helico_1961P: DNA primase; CLK_1342; phage(gi422935771)                        4e-08               MELQDIDLKELIENETGERFNRQGYIKCPFHSEKTPSLRVKFNPDTNKDFFKCFGCSECGDAIDFIIKYKNLNYTEAREYLGIEVEKTEKELQEEKVKDYVDWELSKFRQGQKLLGIFKFVNERDEIVYFKAKFANGEGKKQLSYYHLEGEKVIAKRGTSELPYNLYNALSAIKNDDVLIIDEGEKDSNTINSIFKNKGYVATSLKGCKELNILKNNRMRIYIIGDTGQAGEQYKWNIYKEFKKYAIEFKFINLPGLKNLGDNKDVTDWIEVGHNKKDLLDAFDRSLDIKNKYELQQDTGGIYKIMFKEKADEVIETKKYITDFRLLKATRIKFIDDETEGVRIVLKSVTGDTIERIGISTVFDDVKSFKNFLGTMDLVFSGRVEDLNRLKGWINKYFALENEEVYGGVKFIERDEELIFVENNGSITSKGVSENIKSDGRNNADVLKNEPITTEELKEIVKHIFKFAGPEKSISIIGTVINNLAVYQCQALKQKLHHLLIVGESGSGKSTILENVIAPILNYPKKDIKSIGLISNFALMKNLSDGNYPALFDEFKPSMMDRYKIGNISETLRNLYDRATISKGNKSLKTTDFNLYRPIILAGEESYPNQEKALIERSCIIYLSRRERTQKNTEAMEWLIKNEELLNKLGRSLIEIVLELDVDGYRRLRCNCNSKIKGLNNRILNTAINESCGIRILNLLLEKHGLKQLVDFDDYITQNIKVEVLEDTENVRSLVERMLILYNDMINDSRAIGWEDVVKSRGDGLFIKTSELINQIREHVIRVGADLVPLNCNDFKKQAKKAGYLVKASGKVIKVDGKSIKFDIYDKEMLQALKVDSIAPPDYEEVDGEDTKIFPFKQVTQKI
complement(2134453..2135037)       PHAGE_Bacill_phi105: hypothetical protein phi105_44; CLK_1343; phage(gi22855037)     9e-31               MYYKFTDTEIKKLLKENFMILYDTREQKNQHILNYFDEKKVKYKKKKIDEGDYTAIITKCPEMGIYRDIYFPVAVERKNSVDELAGNLAEKTDTHDDIRLIRELQRSKNKGIKMYLIIEDKNGMENIKKGNYRSLYTPKAFLGRLSSVQDLYLHDTIFTNNKDTGFEIYRKLYYSIRNYLKELSTDIGPAVENE
complement(2135085..2135210)       threonine--tRNA ligase; CLK_1344                                                     N/A                 MAKCLKCGTIYCVYGGSEDSECPKCKSKDIDTSKEKRLFKK
complement(2135239..2135556)       hypothetical protein; CLK_1345                                                       N/A                 MKTLYKWAITTKPLKIKKEIIKNVKEKRDGSIMDKGDYCTYGFKENLGKYKINTLYNNPSKIDWIQYISLKDDFDLEKVKEILLQEIEKCKKELQLKEDQIKELK
complement(2135616..2135732)       hypothetical protein; CLK_1346                                                       N/A                 MRDLIKDIPSFLLGASMVGFPVGYIVGGYLSKKFYKKR
complement(2135788..2135940)       putative phage protein; CLK_1347                                                     N/A                 MICWDCGKEIDNTLAVYDQFSCDICERTLCKECYLEHLGFCEECLSDREE
complement(2135970..2136494)       PHAGE_Thermu_phiYS40: sugar-phospahte nucleotidyltransferase; CLK_1348; phage(gi118197649)     9e-32               MKMDKVAGSKNDEFYTPVYAIEPILKYIKPNSIVWCPFDEERSLFVKRLRKEGHTVIATHINIGINFFDCDTPECDYIISNPPYSCKGEVLQRLFNIGKPFAMLVGVVGLFESQKRFNMFKNNDFEILYMNKRVAYFKDYSEQKPSLNPPFSSVYLCKGILPKQIVFEEINKAS
complement(2136561..2136971)       PHAGE_Clostr_phi3626: putative single stranded DNA binding protein; CLK_1349; phage(gi20066002)     2e-30               MNKIQLVGRLTKDPELTFAPGTGTAVTKFTLAVNRPQFDKSKQQEADFIPCVCFGKRAEAIANYVQKGHRFGLSGRLQINKYVDKEGNNRWSTDVVVEDFEFLQDKGARINESQSNESSVDYEKDLTPVDDGDIPF
complement(2136975..2137601)       PHAGE_Strept_Dp_1: hypothetical protein; CLK_1350; phage(gi327198335)                3e-26               MKDIFEVKERIINLLSSVERKGIDRVIKYLEESDFFIAPASTRFHGNYQGGLAEHSLNVYELFKEKNKRFDFGLSEDTMKIVALLHDTCKINFYTVYDKNVNIAAAGEKPKWIKMPAYGVNDLLPIGHGEKSVIILQQLMPLTKDEVLMIRWHMGGYEPRENLNNVSAAWNICNAAVALNTADLESSYILEEHFEPGEDKKQMKIKGV
complement(2137615..2138328)       PHAGE_Lister_B054: gp51; CLK_1351; phage(gi157325335)                                5e-48               MIKVLATGSKGNCYIIQAGEEKLLLECGIDWRNILKGLNYSIKGVKGCLISHKHSDHCKSFKRAFESLPKVCAPLEVLEKYNCKEYHKTFLMKHLDKVRLGEFTVMAFKAEHTNSDATECECLGYLIQHSQIGKILFATDTYYLRYKFKNVDHILIECNYSERYMEDLESYETRTFKSHMSLETLKETLKTWDLSNTKTITLVHLSENNGNPEEFKKEIESLTGIPTYVAVPGLEIS
complement(2138328..2139248)       PHAGE_Lister_A006: gp42; CLK_1352; phage(gi157325459)                                3e-64               MGQLAKVENVKSILESSKGIQIKERLNEILGKKTPGFVSSMINVSNSPTLKECEPMTVISSAVVAATLDLPIDPNIGFAYVVPYNCKDKKTGKWIKKAQFQLGYRGYVQLALRTSQYKNINVVEVYRGQLASWNPLTEELQFDFDNKESDEVIGYAGFFKLTNGFEKVVYWKKEDVLNHAKKYSKTFSSGPWKDDFDSMAKKTVLKDMIKKWGILSIEMQTGIKADQAVIKEGIVNKDSGLDENIDYVDNPQNAKDVDFEEIKKEIKEEGNKESIDIERHEPQKDEASVVEAEIIGPENNEEEAPY
complement(2139250..2141187)       PHAGE_Lister_B054: gp49; CLK_1353; phage(gi157325333)                                5e-109              MVNSIFLKNLSLKNFKGIKDLTIDFGKVTNIFGENGTGKTTIQDSFTFLLFDKDSKDSTKFDVQPLDENNNPIHNLETVIKATLDIDGKEVVLKRVYKEKYNKVRGTAKTEFKGYESKYYVNEVPKKVTEYKNFISGLLDEKLFKLITNPSYFPSLPWKDRRSIITEIVGDLDNKVVLDFKKDLEPLKMYLKDKSLNDFVKANRSKINQLKKDRMQIPSRIDEVNNSIQEFDFDGLDIQRRGVAAGIKNIDEQLLDKSKADEGLFKLKTALLEKRQELTETEYKFKANANKPKMEIEAKIRSAEINIRHLNMNINEFEKEVKRNQEYIDNTLVLKRNNLLEIYNNIKNSKFEFNEENCICPTCKRKFETNDIEAKREKLEGNFNSNKAKKLKENIAEGKSTAAKIEELKSKNESLSKKIEDEENMLAATKKSLETLQGKLNSFKTEIEDPEKIKYIKQEIYSLESQIQSYKKEDTTELNNKKEELQEQLSKLDKQLTFKETNEKAKSRIQELEEEETKLSEKIAELEGLEILSEEFIRTKVELLEEKVNSKFKYVKFKMFKNQINGGLEETCEPCINGVPYSSNLNSAAKINAGLDIINTLCNHYNINAPIFIDNRESTNKIIDVDSQVINLIVSKDKKMKVEVI
complement(2141190..2141342)       hypothetical protein; CLK_1354                                                       N/A                 MKSNNQYIKLHERDILTLKIINKQLQKRINNNNAKIEQLRKYNRELKGRN
complement(2141351..2141683)       conserved hypothetical protein; CLK_1355                                             N/A                 MKQAITGYITALINMYSDGNVEEKFVQQLNDLLDYVADLKEENREDITRVVLNNNIEITKLQEYIKELEESCENNNEVTRQQWEKIVRLNNANRIWQNTCNLLIVKLESM
complement(2141733..2142002)       PHAGE_Thermo_THSA_485A: hypothetical protein; CLK_1356; phage(gi397912646)           6e-09               MNENWCTLAIAVLYERTCTIEQAFELYNQGRIFKNRKKSDEDLADMVKLREFLSLKEIAEIYGSSESTVCQLINKFKKKKIAPCQEPNN
complement(2142019..2142189)       conserved hypothetical protein; CLK_1357                                             N/A                 MLKRLLAERGVILTKELSDIVIADIKFNKIRFNKCTSLDYLLSIAERSASILKRCA
complement(2142203..2142496)       conserved hypothetical protein; CLK_1358                                             N/A                 MDNKLLTQKDLSERWQVSIKAIESYRQQGIITPVEGLPSIRFNPRHIAELEGTKLERFSPLERRRMERELEQLKQENEKLKGILSATLANLAPVINL
complement(2142516..2143274)       PHAGE_Clostr_c_st: putative antirepressor; CLK_1359; phage(gi80159698)               2e-18               MSKITTFEGQEVRVKTDKGVTLINLVCTAKACGLTRIANSGNEVVRWTSKGITEKLNLIRATDVERKYSEEIQYILDEIENTDDRNTIYMSSWLSKRLALECHSEKAMRYKNFLVTLDEARKQGQLQPVSQGTILQLAQGMQMIGQVVQDIQTAMTNIETYVKDSIQSKDLQIEKTMNLIGFRSINTKRLSDKLKEQLSEHLGVAVNASSNVYRRTKGKIFKEFKVVKWEDIPVSKYNAVHAFIEEVVCKNI
complement(2143306..2143518)       putative transcriptional regulator; CLK_1360                                         N/A                 MTELVGNLSWNKKIEVLRIIKGWTQKEAAEKCNTNQKVYWIWESGGSYPRKNSRLAIAKAFGIKEEEIFN
2143755..2144357                   PHAGE_Clostr_PhiS63: gp26; CLK_1361; phage(gi388570671)                              4e-05               MPLSKEEIGILIKKARELKAEKIGKKFTQNDLAESLGKSRSYIGDIENGRTYPNYRLLAEIAKVCEVPLSFFDESNNLLLSIINKFFPDMNIEKQEDFAKYISSTLSSSTTEMVDWDINIWREAFEDYNNALIAEEARSYSEVENYEFKTPEAAMQFILKQPAIMGYGGFDTSKMSDQDIIEFANELLNLMKMLGPKYNK
2144407..2144823                   PHAGE_Thermo_THSA_485A: protein of unknown function DUF955; CLK_1362; phage(gi397912661)     6e-09               MKTEEIIQLAQDIKNQYGGNPIKICIALGIKINYINLKPNIYPAYTLKISEKPIINLNSHFTTNSQKVLCAHELGHVLMHDDKLLNQFGDEHNGIEEYEANLFAVALLFDQDDLNIDMSNMDNYLLKELLDVNIKLKV
2145382..2146455                   PHAGE_Strept_P9: integrase; CLK_1363; phage(gi157311136)                             3e-31               MDYNITYRKKDKGIQVIISYKVNGKWKQKSKQGFKKKNDAKRAADKLLDDLKCNIENSLNTDYGNITFKDFTIMFLEHEILYKEPGTIRSYRFALNRFKELNDLELTKINTMQIQTCVDNMIKTGLASSTTKLYVSKLNTIFSNAIKPYNLIAKNPVDGIKILKSKKQEKIKALDKAKLKDLLGKITYKKYYIASLIAATCGLRIGEVLGLTWADIDEINSTLTVNKQWKKLKSGNWGFGSVKSKNSNRVVPISPNTLKELKNFKKNFVTDIHNRIIVCADSINLSRGLRDCYKRNGYNISIHDLRHTYATMLIGNGVDFKTAAKLLGHTIEMTMKTYAHVNDDMINKATNLIEKIF
complement(2146500..2147222)       general secretion pathway protein; CLK_1364                                          N/A                 MNFSMNYLDLKETVQNSEELRGGKQCENIDFSTLKIESSLLKLLPEHICRKYNILPLKIIDEQLYIVSSNYLKEDALYKISFITGKNIKIVLCNKEDILGAIKRFYTNYEGKYKVKGINEEKTISYEENKEKNLEGPIIKLTDSIIEEAIWRKASDIHIEPFKDFALIRFRIDGILIEFKKIPKKIYTSICTRIKIMSYMNIAEKNIPQDGKIQNNYRENNDFRVSTLPTVYGEKLVEVA
complement(2147371..2147499)       hypothetical protein; CLK_1365                                                       N/A                 MVRRKRTFDEISNLAKIDNTESIIGILGVISDVYLYFLVKRL
complement(2147595..2148668)       PHAGE_Cotia_SPAn232: kelch-like protein; CLK_1366; phage(gi377830046)                9e-06               MFKKGFKNIGYFIIVFLVIGLVGCKSHRISEGEKVDIPKFTEVITLKREKDSLGIYNIENGDISKTMETKDVVDVKYNNKNSAYVFINIIEKGKELNKNKITIIKNGKQTILENFYSASDIDISKEGNKIAYRSFKQDSLQSAEGMKIYDLENKKEIKIKSDVLVSGNLFKWLNEDEILYYGINSEKENKAKIYKYNVKENKEEVYVDNIEGICTYFMPNGDNVLLLSSQGDKFNLSYYNKKDNSFKKISEEVNQIYKGTKSIKNMYFLGKNDLENKDYLYKIDGNTLNLTKLTYDFPPKIDINGGIVSDKNGNIYFSGYEDLKEQPLNEIYVYKEKDDTVEIISDKENSYHIMGER
2153449..2153460                   attR                                                                                 N/A                 AAACTATATATT
2160502..2160514                   attR                                                                                 N/A                 TATCTAATATATA

#### region 2 ####
complement(3293385..3294950)       PHAGE_Burkho_ST79: phage tail protein E; CLK_2420; phage(gi509141649)                7e-18               MGVNVGEAVAYLKLDTSEFKKALNGAGKDLEIFVHKVEEEKTKIEKLQEALTKKAETFSNIGKSMEKPSAAAQNFLKTGMKNTLDEEAKSKNPKKGPANIAKNNYDKIQKDIQASIKKVQDSFEQLQASVVTQLIPIFNDKLVPILNNKLIPAFTKIANKAIELMNSFNKLPNPVKNAIAIMIVSIAGIAKTFTVLGNLITSINKVISTFKKLKDAGGIFSILKTIITSKTLLILLAIAAIGLIVYEVIKHWDKLKAYFIKFWDGTKKVFHNFWSWLQEFFKKWGPIILAILAPFLGIPLLIIQNWDRIKSAFSAILVHITNVGKKIGKFFEESAQGWKMLGEDIVGYVKKLGHRIIDGFVNGIEKRVKRVKDAATNLANTVKSGFKNPLKIHSPSRVFDEYGRFIGEGLIHGIDNQENAINNKFKGMADKIKGLGNVRPNFNGLNNMSLSGAYGGTYASPYGPNNMNKSMGLTQDIKMYVTIPNADKEGANKIANEFKQMTESSMKNVMTGLFMNDVLRD
complement(3295097..3295321)       PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp21; CLK_2421; phage(gi304360683)     3e-05               MSVISISKQYKQRPSEIIGLTNDYEAFCFDEACVYILNEMSKEDAREPKFIDGYKTNKTNNEDVIQWLNTNNKN
complement(3295299..3295715)       PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp20; CLK_2422; phage(gi304360682)     5e-29               MDLKVTNIEDLKKVAQGEVIQLPQFGQGIPFNARVKRVSLLNLVRKGILPNKLLGAAEELFYGKQNSKENVDLVQMTNVMYIMAENALIEPSIEELKNVGLELTDEQIVALFNYTQEGVNELDSFREESEDNERNINK
complement(3295730..3296617)       PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp18; CLK_2423; phage(gi304360680)     3e-26               MTNGKTLVNVVKVNFIDEVTNTKHTIETSNEIDIEPINSKGKRDILRIKNKIYGINETDDIVIGYKLKMKDNLFNIETMALIDGGTIQDNKYCGTEVGIAVERHPFTMEIFTEEKDYSRTTGYVKFVYKHCKGKPAKYKIQDGKFLVSSYEAESIPFRNEKPVEIEFINKLEENDNGEKPGEPTPIEDIGVEGGKVENNNPDVGVSITNRVVWNFSNQINQDDVNLENFIIKRKSDNSRVNGNVTIDDTKKIVTFVPDSLAIDTVYIAEAKEINKLDGSGKTTALSTEFKTIKIR
complement(3296622..3297041)       PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp17; CLK_2424; phage(gi304360679)     9e-10               MSKFNYKVPGDCIQQDIINNTIPETLWQKVYLYLKKLGYNVYAPGQKRNKCTESYVVIKENGVHAVVGNISGYKLFDIIVYSPMDQYSTMEFYVENLKEALKKIEDLRPTGNETPSIIDYDVQAYTTSIEYQQFKSLRR
complement(3297047..3297394)       PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp16; CLK_2425; phage(gi304360678)     5e-10               MSEFEVNIDSIIDGLSEFETQSKAAISGYADIAGKKLEEDAKKNAPWKDQSGMDIETIKGGKQWKGDKCNIYISGNKDYYSSLELCNDKKYAILKPTIDKLSPQILKGMSNLFGK
complement(3297399..3297764)       conserved hypothetical protein; CLK_2426                                             N/A                 MNNINRAKISKNIYEQLEKRDLLREIKILRIGKNAFEEKLDEVYVCTIKGYYYKNNSNIITTSIEGLEVNNLYNDKLLISYNDANSKIQKDDYFILDGTKYEIVDTGNIQNLVFDMILNRV
complement(3297764..3298048)       PHAGE_Clostr_phiCTP1: hypothetical protein phiCTP1_gp14; CLK_2427; phage(gi304360676)     1e-06               MITPLEILKFNLQEKQYPYFEDKELELLLEINNNDVERASYKGCILKAIADDGIEVAGIKLQSNRVYWLTLAEYFREEQKILRNQTSMERVDEH
complement(3298054..3298185)       hypothetical protein; CLK_2428                                                       N/A                 MIYYNEDDLRLYNKLNKQMIKLFFKNIYRKISNLREIKFNWGR
complement(3298367..3298501)       hypothetical protein; CLK_2429                                                       N/A                 MKYNSIIKIAEFLLYKTTAKYSLIISKYYETKFKFTAFKNKLIN
complement(3298553..3299074)       PHAGE_Clostr_phi3626: Gp43 protein; CLK_2430; phage(gi20066006)                      2e-17               MLDKKLYIKTEERLYRYFRSKKELSKLKNRVNHLSNRIEIIMDKIKNNDVTLEEESRSRTYDEIVQTSSNGTSYAERELIRQIERLEIELGEKIKKKGKVEYKIREIEEEISVMEDNISSLNEENKKFIELKYGENKSVDWIAVEMFGRARSTAYRKKNELVEHVAQLNNLIG
complement(3299193..3299507)       conserved domain protein; CLK_2431                                                   N/A                 MSTVLVKEIENKVFEEIESFREENVVLKILLKEYVKKSIDYEKLLKESINLLDKYQEELEFLRVGKNSWTDEVVKHYFTIKDLQKALDIVGKEIMIYELNKNNK
complement(3299564..3300391)       PHAGE_Bacill_IEBH: DNA replication protein DnaC; CLK_2432; phage(gi197261519)        9e-42               MEKTLKSKELDYNIAGENEKVEICSVCGEAIEKITYIPGLNRYIKGPVMCKCKREALMAKEKEKINKEKQLRLKRIIKNSLIDEKFRNSKFKNWDFTKGNDKMYKIANKYTKKFENMKKESVGLLLYGSPGNGKTYTVACIANFLIEKMLPVICVNADSLLNRIKDTYKKSGKEVEEDVLRGLDNADLLIIDDLGTEQDTEWTRTKIYNILDSRYRNGLPLIITTNLSLIELKNRYEKRTYYRILEMCTPILNDGKNIREEKAKEKTQILKELLK
complement(3300354..3301259)       PHAGE_Lister_A500: gp45; CLK_2433; phage(gi157325004)                                4e-45               MDKKESGDMLAEVKWIKITTNMFDDEKIKLIDAMPERDTVHYIWIRLLVQAGKTNANGYIFLNDNVPYTEEMLSTIFNRPLNSLRFALKVLKDFGMIQIQEDKLIRITNWSKHQNIEGMEKVRQQTRERVAKHRAKKKELLEETKRHGCKNNDNRKSIMLHETLSNGRDIDIEDIDIEIKEDRKSDIRKNLDKINEAYFNTFYRQISATYLNQVLKVMAKEDYTDLLIYALDITKKREQEQGKIKGFKYTMSILESWINKGYKLPQDVKKNEISKKWREGEVYETSRRSFGEDLKKQGIGL
complement(3301353..3301565)       PHAGE_Clostr_vB_CpeS_CP51: putative helix-turn-helix domain protein; CLK_2434; phage(gi509140071)     4e-05               MAVIKTKEYRRIRNLSISKLSYKSKIARSYITELEEGKYENPGLKVICNLCKTLKITPNELIDQELWRWW
complement(3301617..3301835)       PHAGE_Staphy_SpaA1: transcriptional regulator, pbsX; CLK_2435; phage(gi399498897)     4e-07               MTTAKKLKAYRCLRGAKQEDIARLIGVSLNTYNFKENGKKSFTLNEAKIISDFFDTTIDELFFKKIVNFRNT
3302027..3302437                   PHAGE_Clostr_phi_CD119: RepR; putative repressor; CLK_2436; phage(gi90592681)        9e-15               MAEIKDRLKYERLRKDLNQTELAKILNVSKQTVSNWENGNRIPDTLTLSKLADFFNCSVDYILGRSENRNGIISKANIDGSNYEFELDKSIFPNGITREQMINYIKELEERNKELEKEAEISRKLKEAGFDFNPDK
