gi|00000000|ref|CP001049.1|  Yersinia pseudotuberculosis PB1/+ plasmid pYPTS01, complete 69812, gc%: 44.69%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
11678..11692                       attL                                                                                 N/A                 TAAAAAATATTTTTT
12078..12554                       PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; YPTS_4222; phage(gi17546158)     6.29e-70            MDFVADNLFNGHRVRALTIVDNFSRECLALEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDFSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPHSSLNNLTPAEFARSHQKGPDL
complement(13140..14006)           peptidase C55; YPTS_4223                                                             N/A                 MIGPISQINISGGLSEKETSSLISNEELKNIITQLETDISDGSWFHKNYSRMDVEVMPALVIQANNKYPEMNLNLVTSPLDLSIEIKNVIENGVRSSRFIINMGEGGIHFSVIDYKHINGKTSLILFEPANFNSMGPAMLAIRTKTAIERYQLPDCHFSMVEMDIQRSSSECGIFSFALAKKLYIERDSLLKIHEDNIKGILSDGENPLPHDKLDPYLPVTFYKHTQGKKRLNEYLNTNPQGVGTVVNKKNETIVNRFDNNKSIVDGKELSVSVHKKRIAEYKTLLKV
complement(14402..16600)           serine/threonine protein kinase; YPTS_4224                                           N/A                 MKSVKIMGTMPPSISLAKAHERISQHWQNPVGELNIGGKRYRIIDNQVLRLNPHSGFSLFREGVGKIFSGKMFNFSIARNLTDTLHAAQKTTSQELRSDIPNALSNLFGAKPQTELPLGWKGEPLSGAPDLEGMRVAETDKFAEGESHISIIETKDKQRLVAKIERSIAEGHLFAELEAYKHIYKTAGKHPNLANVHGMAVVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKFIAHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQPKGFTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQGLRFITSEPAHVMDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDSNEARLHEFLSDGTIDEESAKQILKDTLTGEMSPLSTDVRRITPKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKSFNSLILKTYRVIEDYVKGREGDTKNSSTEVSPYHRSNFMLSIVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLVTLSQQGQPVSSETYGFLNRLAEAKITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVVKFGTEQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRSSLMDEHLVEQREKLRELTTIAERLNRLEREWM
complement(16608..17057)           conserved hypothetical protein; YPTS_4225                                            N/A                 MINTTFTELLPKIASHFGLDKLSQDEYGLCELILNDRVVIMLRADEILNRLTLLGPILGFSGPEARSAASQLFFCYSINALNKDGPCFAWSEELGLIAFKHLSLDELNVENVSKEIANFYDWLSLVSLPAETQQELPLHTQSTQSVKWG
17215..17325                       transposase IS3/IS911 family protein; YPTS_4226                                      N/A                 MGTPRFTPEFKEEAVRQITERSYSVAVVDHKIRTPS
complement(17309..17545)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; YPTS_4227; phage(gi41057343)     6.62e-19            MQSMSRRGNCLDNSPMERVFRSLKSEWLPVGGYMDVHHAVRDIGEWGYKVITTHPHRHNGGLPPCEYEEQGKKATKVS
17577..17626                       attL                                                                                 N/A                 TTCTTACTCCTGTACTGCCCTCCCTGATCCGAATGAAACAGCAGCCTCTT
complement(17801..18040)           conserved hypothetical protein; YPTS_4228                                            N/A                 MSKKHYCRLHDLNISTFYYWLKHHQDDTTVAIPPAFIPARRVIPDNNGTEAVTLNLPNGCSVSCLPAQLRAVMQALSLC
18168..18386                       conserved hypothetical protein; YPTS_4229                                            N/A                 MRSPLAYGCSVYTVNVVTQLHNDIHKSAYKHKRLYHVLTGQASSAQPVFSMPHRGMKAPADINYNSVDNWRR
complement(19213..20079)           incFII family plasmid replication initiator RepA; YPTS_4230                          N/A                 MTNHQALFTHHYRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLANRIQRSITNLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVAAARRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEGRFVGNLDAVRREKARRVKERMLMSRNNNYTRLATGAT
complement(20388..20642)           RepB, repA2, CopB; putative replication transcriptional regulator; YPTS_4231         N/A                 MSQIENAVTSSSKRAYRKGNPLTGAEKQRMSVSRKKETHKAINVFIQNDLKNELLQLCEDSGLTQTEMIERWIQREKAARTNAA
complement(20780..21019)           phospholipase D/Transphosphatidylase; YPTS_4232                                      N/A                 MVNAGIPVRTVNSFKALHDKVIIVDGKNTQMGSFNFSQAAVQSNSENVLIIWGDFTVVQAYLQHWQSRWNKGTDWRSSY
complement(21088..21183)           transposase remnant; YPTS_4233                                                       N/A                 MDVHHAVQDIGEWIQSYYNTPPSAQWWITAL
complement(21445..21852)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; YPTS_4234; phage(gi41057343)     5.40e-27            MVELCRLLKITRSVYSASLNLRVDVKRLQLRELHQQSRGAAGNRTLSLLMRQSGYNVGRWLAGRLMRECGLASRQPGKPRYRGEREVSLASPDLLKRQFKPSEPNRVWSGYISYIKVNGGWCYLALVIDLYSFHW
complement(21879..22196)           PHAGE_Bacter_Diva_NC_028788: transposase; YPTS_4235; phage(gi971743573)              2.48e-09            MTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGVTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
complement(22368..22826)           conserved hypothetical protein; YPTS_4236                                            N/A                 MGGMAAHWFTYQYAVPFCGRAKTLVTLSNAEGESVLISPQQNTAQDISLFMPRELTVSQGDRVRFTRSDTDRGYVANSLWEVAGFTEDGAVRFRQGDQEKIVDPQKATEDRHIDLAYTLTAYGVQGASERFVIALFGAEGGRKRMATLHLFT
22976..23164                       PHAGE_Bacter_Diva_NC_028788: transposase; YPTS_4237; phage(gi971743573)              2.48e-05            MRKWIRQYKEEVSGVTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLR
complement(23493..24791)           PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: adhesin; YPTS_4238; phage(gi414087345)         3.03e-08            MTKDFKISVSAALISALFSSPYAFAEEPEDGNDGIPRLSAVQISPNVDPKLGVGLYPAKPILRQENPKLPPRGPQGPEKKRARLAEAIQPQVLGGLDARAKGIHSIAIGATAEAAKPAAVAVGAGSIATGVNSVAIGPLSKALGDSAVTYGASSTAQKDGVAIGARASASDTGVAVGFNSKVDAQNSVAIGHSSHVAADHGYSIAIGDLSKTDRENSVSIGHESLNRQLTHLAAGTKDNDAVNVAQLKKEMAETLENARKETLAQSNDVLDAAKKHSNSVARTTLETAEEHANKKSAEALVSAKVYADSNSSHTLKTANSYTDVTVSSSTKKAISESNQYTDHKFSQLDNRLDKLDKRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSNVMYNASFNIEW
25209..25221                       attL                                                                                 N/A                 AATTTTTTTATTT
25400..25780                       PROPHAGE_Xantho_33913: ISxcC1 transposase; YPTS_4239; phage(gi21231060)              1.81e-38            MVERYPRDGFFKVFQILRRWGYVWNHKRVHRIYCLLKLNIRRKGKQRLPARTPSPLAVPERLNLSGAVDFMHDALICVDDYNREKLAIEIDLNLPTQHVIRVLDRIVVNRGYPVMGFEVQWDENVR
complement(25777..28092)           PROPHAGE_Xantho_33913: Tn5041 transposase; YPTS_4240; phage(gi21231545)              1.00e-33            MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRRGKHNRLGIALQLTTARFLGTFITDLTQVLPGVQHFVAVQLNIRRPEVLSRYAERDTTRREHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKILLPGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKRLLDDAPEHIITGPWKRLVYDAEGRIQRAGYSLCLLERLQDALRRRDIWLKNSDRWGDLREKLLQGEEWQAQRVLVCRALGHPTDGHKGVQQLAVQLDETWRAVASRFEGNTEVHICNDGKYPSLTISSLEKLEEPLSLLRLNNRVRQLLPPVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVLMAEACNIGLEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRWGGGEVASVDGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVVPGTLRDSIFVLEGLLEQQTGLNPVEIMTDTAGTSDIIFGLFWLLGYQFSPRLADAGEAVFWRVDKSANYGALDELARGCADLSKAENQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSGLAQAIMAVGRVNKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSWMRSNGEETRDEDIARLSPLMHGHINMLGHYTFTLSDDILNGELRALNFNLNNELSP
28256..28807                       PHAGE_Salisa_1_NC_017983: hypothetical protein; YPTS_4241; phage(gi388570712)        1.10e-31            MRLFGYARVSTSQQSLDIQIKTLKDAGVKANRIFTDKASGSSADREGLDLLRMKVEEGDVILVKKLDRLGRDTVDMIQLIKEFDAQGVSIQFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGREEAKLKGVKFGRKRRINRKELLELHEQGMGATEIAKKMNIARSTIYKVINESQ
28826..29290                       conserved hypothetical protein; YPTS_4242                                            N/A                 MNLQNNLHSILEKVESLKNIKMLDKNNGEFTYIEGNYYFSDLTTDSLNIYEIKYLFTFENFDFFSNGKPNEVSVYKATNSFNSVCLGIKASLNSLDVERKELTVQFTYSMVFDASKGIPNFSNELETSMGLLRIAPKKLSNSFKDKGIEHNYVN
29429..29758                       conserved hypothetical protein; YPTS_4243                                            N/A                 MLTFFAKYYFDLFFNKEKNRKEKEITTRLEKRISKLEKENISLRDDLIKCKLEHIDEVMRIERSLNTQLKTNYKNNNNENLWAGIDDIIKTIECVSIESKIGGVKTNLK
29858..30124                       PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; YPTS_4244; phage(gi17546157)     4.67e-46            MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKF
30202..30957                       PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; YPTS_4245; phage(gi17546158)     3.27e-104           MMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFNGRRVRALTIVDNFSRECLALEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDFSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPHSSLNNLTPAEFARSHQKGPDL
complement(31105..31530)           Tir chaperone family protein; YPTS_4246                                              N/A                 MRTYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEPTMKKEEDDHRPSSSHLLV
31563..31575                       attR                                                                                 N/A                 AATTTTTTTATTT
complement(31872..32303)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; YPTS_4247; phage(gi557307613)     5.63e-91            MHELEALLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERCENVILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLYEDITNIGVY
complement(32303..33475)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; YPTS_4248; phage(gi557307612)     0.0                 MLSREDFYMIKQMRQQGAYIIDIATQVGCSERTVRRYLKYPEPPARKTRHKMVKLKPFMDYIDMRLAENVWNSEVILAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRTVRFETQPGYQLQHDWGEVELEVAGQRCKVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLAEHYDFLPRACRPRRARTKGKVERMVKYLKDNVFVRYRRFDSFTHVNQQLEQWMADVADKRELRQFRQTPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRSYSNEQQVASHRLCSASSGWQTVPEHHAPLWQQVSMVEHRPLSAYEELL
33516..33644                       hypothetical protein; YPTS_4249                                                      N/A                 MLGGADNTNGELPSYITGANTVKGFMLIISACTGFITSVAWA
33737..34027                       PROPHAGE_Xantho_33913: IS1477 transposase; YPTS_4250; phage(gi77747809)              1.49e-22            MDALATGRRIKCLTCVDDYTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRPHSTLNYQTPSEFAAAWRKGNSDSEGSDITK
complement(34090..34482)           Tir chaperone family protein; YPTS_4251                                              N/A                 MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSFS
34751..35335                       virulence determinant YopE; YPTS_4252                                                N/A                 MSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM
40603..40652                       attR                                                                                 N/A                 TTCTTACTCCTGTACTGCCCTCCCTGATCCGAATGAAACAGCAGCCTCTT
46450..46464                       attR                                                                                 N/A                 TAAAAAATATTTTTT
