gi|00000000|ref|NC_000000|  Pseudoalteromonas sp. SM9913 chromosome I, complete sequence. [asmbl_id: NC_000000].3332787, gc%: 40.38%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1263565..1264089                   PHAGE_Lactoc_WRP3_NC_027341: holliday junction endonuclease; PSM_A1181; phage(gi849250969)     1.56e-07            MAIILGIDPGSRLTGYGVVAHQGAKFTYLGSGCIKLADHDFPTRLKMIYQGITQLIEQFSPETFAIEKVFMAHNPDSALKLGQARGAAIVGASMADLPVFEYSARQIKQAVVGNGGADKSQVQHMVKNILKLPGTPQADAADALAIAICHAHSEQNLIKLAGSASKTVRGRLRK
1264092..1264709                   Holliday junction DNA helicase motor protein; PSM_A1182                              N/A                 MIGRLNGVLVEKQPPEILLEVSGVGYEVQMPMTCFYDLPKVGDNAIVYTHFVVREDAQLLFGFNNKTERALFRELLKANGVGPKLGLAILSGMSAQQFVSCVNNEDATALVKLPGVGKKTAERLVLEMKDRLKNWGNDLFTPFSDSAVIEPASDATIANNAADDAVSALVALGYKLPQAQKAVKSVSKPDMSTEVLIKESLKSML
1264717..1265724                   PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; PSM_A1183; phage(gi100221)       4.01e-07            MIEADRLIDAAEKTNEDTIDRAIRPKLLADYRGQPHVKQQMEIFIEAARSRSEALDHLLIFGPPGLGKTTLANIVANELNVNIKTTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSPQVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPAFTLIGATTRAGSLTSPLRDRFGIVQRLEFYSVEDLSHIVGRSAHYLSLEMCDDGAAEIAKRSRGTPRIANRLLRRVRDYTQVKSDGTVNAEVAQQALDMIDVDKSGFDYMDRKYLLAIIEKFMGGPVGLDNLAAAIGEEKETIEDVIEPFLIQQGFIQRTPRGRIVSDNAYHHFGLLPKKD
1266689..1267303                   inner membrane protein required for outer membrane integrity, uptake of group A colicins and phage DNA; PSM_A1184     N/A                 MSWAIIFQRKKAISDALANAKKFEQRFWSGVDLSKLYNEISSRGGQSTGIEALFTSGFKEFARHKKNTFQSAGIVMEGTHRSMRVALSREIEKLESSLSFLATVGSISPYIGLFGTVWGIMNAFIALGEVKQATLQMVAPGIAEALIATAMGLFAAIPAVIAYNRFANKVEKLESHYINFMEEFANILHRQAATQIEAQANVPA
1267353..1267721                   tol protein, role in outer membrane integrity, uptake of group A colicins (TonB-independent), and phage DNA; PSM_A1185     N/A                 MLVLLIIFMATAPLITHGVKVDLPKMEESDLVDTKDTPPIIASIDSQGKYYVSIGTDPEEPMEALDVAAVIKLQLMKNPDTPVMIKGSGKVSYQEVLLLMDFLKNAGVPSVGLMTESFEGTK
1267726..1268631                   TolA protein; PSM_A1186                                                              N/A                 MNTSLIKSVILHLALGGFLYASANIHPPKPKVMEVTLNAAIPEPENAVSAVTVDQQQVEQKIAELRKKEEDKRRAEDKRIRDLERRAADARKQSESEARRIKKLEQQRKAKEKERAEAEAQAKKAREIEQRERAKAKQAQKQKQEAEDAAKAAADKRKAEEAALKKAEEERKKRAEEAERKRQQALQEQILQEQLAKEQAARNKIRQQQVVSEVDKYRALIMARIQQNLLIDEKMKNQQCRINLRLGFNGLVTQVKSLGGDKLVCEAALRAVRMADTLPVSKDKDVFEQLKNINITIAPEF
1268640..1269998                   required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA; PSM_A1187     N/A                 MFNKIKIACLVLILGFQGVAHAALEIVITEGIDGARPIAIVPFKYQGIGPIPEQLSDVIAADLMRSGKFKPVSVSQMPQQPHKDGDIDYGAWVNKGVEAVLVGEVEQQTNGRYLVRYELVDVIRGQITGGETQMMSNGKLVQSQDHILEARQSVIGETGFRRYSHRISDVIYEKLTGEKGAFLTKIAYVIVRDTEEKPYQLVVADYDGFNEQVLLRSKEPLMSPVWSPDGTKLAYVTFENRQSQIYIQDIYTGKRELITSYKGINGAPQFSPDGKKLLLVLSKDKTGATEVYLLDLLTRKETRLTRHRSIDTEPSWYPNGEDIVFTSERGGNAQIYKLNLKTGRTQRLTFDGDMNLAGSISPDGKELVMVNRTNGQYHLAKKELATGAFQVLTRTRLDESPSIAPNGSMIIYSTLHNNKQVLALVSMDGRFKARLPVLDGQVKAPAWSPYLQ
1270034..1270573                   required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA; PSM_A1188     N/A                 MQLNKILKGLLIAVPVMTLAACSSSSDIDENAANQSNQATVEQTTTDTVEVATMTPEQQAEEQLRQKYEALRQEQIIYFDFDKATVESKYADLLRAHAEFLVKNPSVKVLIEGHADERGTPEYNIALGEHRGQAVEKYLQSLGVSASQMSVVSYGEEKPMVKTRTEAAFAKNRRAVLVY

#### region 2 ####
3113957..3113971                   attL                                                                                 N/A                 TTTTCCTGACCGTCC
3114832..3115641                   PHAGE_Shigel_SfII_NC_021857: hypothetical protein; PSM_A2923; phage(gi526244689)     1.80e-80            MHRSSYKYWAIRDTTPTPEQVRLEAEVKAIHAMSGGSAGARTIAAIATNNGFELSRYRAAKLMVKLKLESCQVPQHSYKRGGNEHLEIPNLLDRQFDVVEPDTVWCGDVTYIWVGNRWAYLAVVIDLFARKVVGWAMSLSPDTNLTLKALELAYESRGKPTGLMFHSDQGSHYTSLKYRQRLWRYKIKQSMSRRGNCWDNAPMERFFRSFKTEWMPKVGYENFRDAKYSVSDYINGYYNNVRPHHYNAGLAPNESEIRYQDSKTVAKIS
complement(3115634..3115768)       hypothetical protein; PSM_A2924                                                      N/A                 MKPELNHNATGVKRPFKLEEIWRIRTRIEIQNNLMQLALLVVVN
complement(3115997..3117196)       conserved hypothetical protein; PSM_A2925                                            N/A                 MSTQILDAYAAVFAALDEKELQDGEFKGWLRLTPQLKDKLELLADAGLTTGSYDFNKDGKPFSSANLSQLKPAHFENNIRFYIELTAQQIKSDYSICSEWNELLANELRVKSPVKYIFFTNTSTLLTPDSGDEKYVNYLNVHKAYEFVKELAESTEGGDSTIFYERPLNFEFVLKESDLTHSIDLDALKKLLSKDLHKEAITCLMCRELVSFLKDNTLRQRFSYLIQHMDSLVSNVLLSYQSYVENYTFDKVRKEYLEKRTEYVSKIHGVFDNIATKLLSLPAGIWFATTQIKEIEIGGLETMAFAKNVSVIVTVSVLAVLLIFNLFGQFSTISTMSKEYRGVFNALAKTYEDEAPEIGKAKSDIESAQTQVEIKLYIAICATLSLVGLTIWMFCKAYN
complement(3117196..3118236)       PHAGE_Pseudo_F116_NC_006552: nucleoid-associated protein; PSM_A2926; phage(gi56692913)     6.70e-34            MAIKHVIIHVVKRDKDGERLSKQLRNNENSTQGMTAQLTDGLLELFSNAHLNIGEFGVDGDNEVEPAFEQKLKKYYDDECKCSDFIAMTKELANKYESVIVGDQLHSVKGGYLVFYQYERNDDDWLAVAILNKTEGIDVAANLEVVASEILDLKRLHLGAAINLTQWKSELSTRYVRFRTGLAADVRDYFEKFIGCQRDKLAATVETKKLKSAIQDYAKNACGMDDDVVSQKVAQAHDYIKEQQKLGNQVQLSHVSNHVFPDRADEFARQAKEIHDLPEELAIDAKVLKSYKKLSGRGKGIAISFDRGMLNTTVKYDDGELTFSEIPDSLRAAIEEELEDDLGQDN
complement(3118474..3119037)       conserved hypothetical protein; PSM_A2927                                            N/A                 MEKLLIGIAGVFVGALLTILREFFNEWRSKRNDARYLAVRVSCQLDHFISGCFEVVCDNGVEDQQGCLVTNSKTPTIDLDGIDGKWQSMRFDLMYRILDLPNRLNYAKEVISIAAEYGDGAPDYRDAFRARQYQYALLGIEANEIAETLRSKYSMPKKCYETWNPLERFIEKKAEIDAIENNRKCSS
complement(3119063..3119896)       PHAGE_Clostr_c_st_NC_007581: hypothetical protein; PSM_A2928; phage(gi80159829)      3.99e-06            MIQLSELRPSGKQRVYDILTALEFDMADWSESLTNKERSPSSNPKYCYNWSFVRDDKKVIVLFLWYEEMRIINGRIYQEHSFKKYAEEQEKGRKKRSLEIDYAIGLAYEKKLSIDVVICQGNENTKGVLKRELDQEKWFVTGYDDKTGACIIERGNSYQPSKLADQFDANNIKNPKYEYEKYGVEYARSSVIRRKVLLRSNGKCEYCLSDGFITNSGDKYLETHHILPLSQGGDDSFINVIALCPKDHRKAHFEKDSFLTQESLSNIVKAKLTVGNC
3120479..3122347                   hypothetical protein; PSM_A2929                                                      N/A                 MKIIKEYIQSDGKKLRLSEEAVTHVYEGNFVVRTQQGDDNMTVLRGGLHSCSGWNTFRNNYNKELSHLHFFNSNIHKYWYYARELSNGVITLRLPRDLFSGKAAKITMYPDDYYKSGYLWKTLFPKHFDRNAVIEAIDEALENEDITQRSNGQIIGYINNDEPMKTMKIVIQFKGTEIKSAFPAWTQPNSGNVGKPFSHYDNIGFIISQSTEYFEDNYDLQNEMKISVFGEKISPDYLPDYTPMIFKRRTKINEKIKAGEWIKSRRKELSSMRLDDKDNDRLYEYINDHTILKYYPEITSGAYSTALDLIFGDESFHNSFQIVQNIVDGMYYLLCSNQKERLIKTICNVLDNMVTHTNFDQLLKKKIMSTVILIVTYLNDSELSYKFILTLSTSPIRREAYLEYNLNSINKKKLQVPTETYPVELDFIDNPNLDFQLEYKDFIEFLKELYSETYTLNFDEEMLNNLLNDVIDNQEKNYKFLISDALKYFSKEDFLSLSYHFDKILNSAQKYELGDSSKLIESCGLILRDYCRIQFAHRQRINARYLKYNDYVSVISIDYIDHNLLYGKILKHERISNHLNLTRFTDGMLKFALKTEDKNFETDIHNFKARIGKEKPPLPEIM
3122571..3122585                   attR                                                                                 N/A                 TTTTCCTGACCGTCC
complement(3122702..3123172)       transcription elongation factor GreB; PSM_A2930                                      N/A                 MYTDLITREGLDKLNKELNYLWRDYRPEITKKVAWAASLGDRSDNADYKENKRLLRQIDSRIRFLRKRIEAVKVIDYSPQQAGKVFFGAWVEIENDDGETKAFRIVGPDEIYGRNDYISIDSPMARAMLKKEVDDEFQVKTPVGVKEWFINKIEYK
complement(3123194..3123817)       conserved hypothetical protein; PSM_A2931                                            N/A                 MTELSPKTVHEQLKKQTSSRVQSSLDAIFQVCTEQKERGLNEFGYSIIARLGKGRGVPAAQSIRNKTGEPYRTLIASFANSSLQPDKSTISLNKGKSFTWIEKLKDPVVRLQANILYSQKLAAEKLVKEIVPIDQVIEFYDGGSSSSPNLKLTDLEREALEYLISKEFMRRAGLEVGPNGSILSSNDKDNFLPVATLDAVKKALQYL
complement(3123819..3125168)       phage integrase family protein; PSM_A2932                                            N/A                 MFGSRLASRLAAALFFASKDQLTSATYAGKSFKECHLQLEQQEGIALSLFKSEYTPHSMRVSLINAYVYEFGMPLEVIMKLVGHSSVVMSIYYLKSDKTGANIREKLKLGEKQALSNGSDTLKSFIESQRIEECKKQLLGNNPEFLQTLNNSRPASSYLFKDFGICPVGGAFCREGGDAVATKANIYHPVNAGYLGEQNCIQCRFFVTGPAFMMGLSALFNEVSLAVNTQSYRFTSLEEELNNAASRVDVISHELYKQKNQQLEDEKQQLQALRRKLNSEIETRAKKLDLYMADMNSLHKHLTNCQKVINNDKQQGDSKLQLIVPNEFEISFELDDVSSFQQLSEVCENAELYHSCSDELAVTRRSQALDRMLLNNGMNPQFIFLTEKQQLAVGNQMTQLMLSRLQSWEKLDKLINGTLALNDFLEKERLTLMDIKSLFASSTPLKQVD
3125241..3126443                   PROPHAGE_Shewan_MR-1: ISSod4, transposase; PSM_A2933; phage(gi24373869)              0.0                 MTQSFDFNKALAELQAGKGLTGEDGVLTPLIKQLTEAALKAELEQHLESETEVNRKNGSTKKTVKSSIGQFELETPRDRSGSFEPQFVKKNQTKLTPEIDEKILSMFALGMSYRDIRGHIQDMYGVEVSEATITAVTDQLIPELKAWQARSLDTLYPFIWLDAIHYKIKENGRYVSKAIYTVLGVNIEGRKELLGLYISESEGANYWLSVLTDLHNRGVSDILIACVDGLKGFPEAIATIYPDAEVQECVIHQIRNSMKYVASKHQKEFMADLKPVYKAATKDAAEAALAELDAKWGKLYPIVIESWRRKWGNLSVYFKYPDYVRKAIYTTNAIEAVHRQFRRLTKTKGAFPNENSLMKLLYAGILNASKKWTMPIHNWNLTLSQLAIHFEGRLDGVLDI
complement(3126440..3127396)       phage integrase family protein; PSM_A2934                                            N/A                 MNSGRFISPLEFLIREKTNIQPMLDLFEEESVLRKKKWLFSVNEFLNWTIVNFLTVEDPETGEISRIKGARNPFARINFDDEIAPVLLNETNKLALPYQFVKSAREWIFPPNEIQNKTNYSDLKHLHRTSADWIQINDLSLIDTTDPDCIIRQEGDKTFLWLPIYWTYTYALMQLPARGRQIVYCDSGEADAEVPDIKNGSIIWKPNRNKLTGLTKQQGMINKTKDNDFGVHYTSNKTHFSGEGYTIAFMPIELAYWLIKLRKWQEKYNPISKPTKWFDCRRTNLNEVQRKQKGINCFLFRGYQNEGGRSEFCVSLSC
complement(3127417..3128313)       PROPHAGE_Xantho_306: transposase; PSM_A2935; phage(gi21243165)                       2.13e-131           MDFIDACREHYGVESICKELPIAPSTYYSHKQIQREPERLSNRKKRDAELIILIREVWEDNMSVYGARKIWKQLQLDDHQVARCTVERLMRVMGIQGVRRGKAHKTTIPDEQQDKPLDLVNRQFTAEQPNQLWVADITYVATWSGFVYVAFVIDVFSRYIVGWRVSTTMHTELILDALEQAIWHRGNPEGLIHHSDRGSQYLSIRYTERLAEAGIQASIGSVGDSYDNALAETINGLFKTEIIRRNGPWKNVDAVEYATLEWVNWFNNQRLLSSIGYISPAQYETDYYDNLNESGKVA
complement(3128649..3131237)       phage integrase family protein; PSM_A2936                                            N/A                 MKKYFYPEYALAKKHAQLLGVKTSKEYKLRYKEDPLLFNTPNKIYKNEWEGWESFLGTKKEFYATLSDAKKAIQALGVTTRREYKRQYKSDPLLISAPNIYYEDDWKGWRDFFDTNQNFYSSIDLAEKAVSVLGITTSTQYMAQYKQDPQLPSVPGITYSSEWKGWKSFLGKEKEVYTSYSLAQKAVIDLGIKTQKAYISCRRNDPLLPFSPDKVFFKEWEGWQHFLNTFDESYFDLSSAKKAVISLGIQSSSEYVKRYKEDPRLPAKPTRKYKDEWPGWFSFLGKDIKFYESYELAQKAALKLGITSVTEYRENYHNDPMLPSMPNKKYAKSWRGWPHFLNKTYKFYTSYADAKSATQALGIKSSVEYKKRFKEDFQLPSQPDNVYEEDWINWGDFLGKKLIQFYLTYEEAKVAVKKLGATTLVQYKQKRLDDPKLPSCPDQVYLKDWLGWKIFLNTPKKEKYLTLIEAMQATQAMNITSLKEYKSKYHLDPNLPAKPDGKYCKEWINWHTFLGKSPKFHSYDEAQQSAIKLGIKTAAEYRENYKKDLKLPSVPRQIYTHRWESWQDFLKVASKFYPTYTEAHNAAKALKVSSLLEYKARYKEDPRLAVKPFALYADDWINWIEFLGLKKKSFKSYEDAKKIIQTLNIISFADYKNCPLADLYLPKNPDSYYSASWTNWKDFVLPEIVDNLEILKKACKILNISNSKQYREVQKKYKQLPSKPDKKFEDWVDWYDLLNIPRPYSYEELRLIVLKYKCKTLKDYKDMRTKLHDPRIPSSPEETYKTCGWTNAYNFLGTNRPYQIKYFDPKWKFWADFIVEFLKSAKAGDTKVKDLCEFVREYIEPNNYEVLNRPVFARDSIT
complement(3131234..3132625)       phage integrase family protein; PSM_A2937                                            N/A                 MLNQYKYSKPSYLSVTNYILNSTTYWISILAYILKRRVDYKANQSVLAVSLPVLITDKGILVSHLRFLYTKRNKSQSWLERNVFAVEQLLKFMNAHSSTFTSATELLRSFVDVLCFGSIDDSQNDPSNLYWSPRKVEDVNVLLSHINCYCDYLDEIYGYDLPNLNPLRKATRAEERMRWCAYYKRESNCFLNHLSNPSKNRFEMIRSIQGPMNHLLSIESVNRFPEEHFQRFLKYGFLNHRTREVDFGCVLIVMLMHYGGLRLSECFHIYIRDITIDVKNSTAIFSVFHPSDGASPELGFSNRREYLNTRFRQKPRNEYQRSHRLYSGWKQPLLTNKNLSFDVMIFPNNKAKELAWLLEQYLAVRITGNHPYLFTNSNGDPESKKNFIQKYKRGVERIGLDAGKCFGTSPHSHRHSYGYSLNQAGFNQLEIQKAMHHKSNFSCLVYLKPNDTDIRNIMRKNDI
