gi|336035142|ref|CP001831.1|  Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence. [asmbl_id: NC_000000].1633319, gc%: 60.16%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
225220..226737                     PHAGE_Strept_phiC31: gp26; SM11_pC0264; phage(gi40807292)                            4e-05               MSSLFTSRWHKIHRHFWNISLVQLVKGSRKSGATRRIYLSLRDQITSGVYDAGERLPSSRALAGELGVSRTTVTAAYDQLISEGYITVRQGAKPTVTSEGRHPYTRPASQAQEPTPQVSAYASRAMALPKNISAEQAALQYDFRYGDIASSDFPKLAWRRALNAAVLAYRERLGYEHPAGNLALRRALQGYLWRARGIECDITQIIVVSGSQQALDLCARVFVDPGGQVVLEEPCYAMARNVMLATGAMPVAIPCDKDGMDTSRLPVPKDVALAFVTPSHQFPLGGVLPSGRRKALIEWAISGNTYIIEDDYDGEYRYDVRPIPPLWMIGQGRVIYVGTVSKTLSPTLRLGYMVLPGTLAEPFVRCKQITDRHSSSFEQEALASMIETGAYESHVRKMRRLNAERRTAFLNAMAEAFGDEVDIVGTSAGLHVVVWFNHLTGSDEERFAASARQEGVGIYPISRLYAAPTDQRAGFIFGYAGLPVEQIGKGVNDLVQVYRSKFRSA
complement(226819..227115)         conserved hypothetical protein; SM11_pC0265                                          N/A                 MADDTLELQASTTAWQIAMQEILRMVVRDLYQSHGEVAFTAHIKRIEEGAVGSIYSDLRLRGTNEWTETLVKEKATNIVTNLLTSFTFEQSDPRPGTT
complement(227172..227390)         hypothetical protein; SM11_pC0266                                                    N/A                 MAQTFSKARQRAESAFNKVQSQFFARDQAVEEQDFVTLARDAKTARLREARLAKESDDRARATSALITRRAK
complement(227518..227727)         PHAGE_Lactoc_bIL312: Csp; SM11_pC0267; phage(gi13095918)                             4e-10               MTTGTVKWFNSTKGFGFIEPDNGGADAFVHISAVERAGMREIVEGQKLSYELERDNKSGKMSACNLQAA
complement(227816..228025)         hypothetical protein; SM11_pC0268                                                    N/A                 MGAGAGLMANVSLLHVSERRFALSFAAPVTAFSATSSKLLVDILIANHYLAFIDLFLAELWLPRDWHRA
complement(228093..228251)         hypothetical protein; SM11_pC0269                                                    N/A                 MAAGGGDDDIWSFLEGHGLFGRAEQQWMVNFRADDLDWLVASLTASGIALET
complement(228514..228615)         hypothetical protein; SM11_pC0270                                                    N/A                 MVTHHALDSGHGWAANDDDLVLARPWMDENFPT
complement(228846..229847)         PHAGE_Spirop_R8A2B: putative transposase; SM11_pC0271; phage(gi9626114)              2e-17               MSLCYSQLTLSDRRRLHQLVERKVPVGEIARQLGRHRSTIYRELKRNTFHDAEFPEYSGYYSGIANDISKERRRRLRKLSRHPQLRELVIEQLKALWSPEQIAGRLLADGVSAVRVCTETIYRFIYSKEDYALELYQHLPEGRRKRRPRRSRKPRDGSIPLDCRISQRPDFIADRSQFGHWEGDLLIFRRDLGEANVTSLVERKSRYTVMIKNGSRHSRPLIDKIIDAFSPLPAFARQSFTFDRGTEFRGFKALEDGLGARSWFCDPNSPWQKGAVENTNKRIRRFVPSDTDLSAVNQPQLVALAHHLNSLPRKCLGYRTPAEVFMAHLRDCG
229870..229882                     attL                                                                                 N/A                 CTTTGTTTTTATT
230030..230365                     PHAGE_Stx2_c_1717: transposase; SM11_pC0272; phage(gi209447153)                      3e-07               MGKLWQVEETVRGASPETRVAVRQQTSAVVVAEFFALWHQTLPRISGKSKLAEAIRYAISRGAIFERFLTEGRIELDSNIVERATRTHSSSAATAAEGTGRPSRHCCKRQK
230362..230502                     putative transposase IS66; SM11_pC0273                                               N/A                 MNNVDPLAWLTQTLERIANGWPSSEIDAHSCRVGVDGSQRHRNVPG
230832..231143                     PROPHAGE_Shewan_MR-1: IS110 family transposase; identical; phage to Y4pF; SM11_pC0274(gi24375433)     1e-05               MSRPTMRFVPVKTAHQRAALMLVGLRERLIRNRTQLANAIRGFAMEFGIAAAKGMCRIEPLLERIAADQSLPALARELFAMHGVEYRRKEGGRGKTDSVASLR
231339..231785                     PHAGE_Stx2_c_1717: truncated transposase; SM11_pC0275; phage(gi209447151)            5e-06               MADDGFVGRYEVVEPRRGNRRWPDDVKARIVAESLEPGVRVVDVARRHDVVPHQLSFWRRQAREGILALPFESMPGLSESGDAEPAFVPLAIAAEPSEAVNVLAPLKLREAVSSVLTLTIGPDVVMRVPGDVSVERVAALVRAIRGTA
231782..232135                     PHAGE_Stx2_c_1717: transposase; SM11_pC0276; phage(gi209447152)                      1e-15               MIVAGQRLPILVATRPVDFRCGHQALALMMQTELKLDPHSGVTVIFRSKRGDRLKILVWDGTGMVLTYKILEHGSFAWPKVQDGTMRLSRGQYEALFEGLDWRRVMAQRVTAPSAAG
232198..233673                     PHAGE_Stx2_c_1717: transposase; SM11_pC0277; phage(gi209447153)                      2e-68               MSSPLDLSLFPNLPPEVVKAFAAMQFELSVERAARQHEQAVVAEKDAFIAELKELVEKLEGQVHDYRRTKFGPKSEKLDPAQMELALEDLETAIAETQARIAAVEKKIEASASDPEKVAPRKERKARALPEHLPRVERVIEPESIVCPCGCGNMVRIGEDRTERLDRIPARYEVIVTIRPKYACPKGRTGIVQARAPAHLLEGSWPTEALLAEIAVSKHSEHMPLNRQAEVMARHGVPIDRTVLADWMGRTGAAIAPVVDHMAKRLLWESTRLYVDETTAPVLDPGRGKTKTGYLWAVLRDDRGWNGSAPPGVVFHYRPGRKGEYAAEILDGFNGTIQVDAYGGYSHLATSDRVGGDPLRLAFCWAHGRRKLIKATPKSGSPIVDEALVRIAALYKIEDSIRGSDPEHRRAVRQELSLPLVDAFFTWLAAQAKRISRKSDLGKALAYMLTRQDGFRLYLDDGHVDIDSNLVENAIRRPAGHESLCTPFLSN
complement(233662..235737)         PHAGE_Bacill_phi105: site-specific recombinase for integration and excision; SM11_pC0278; phage(gi22855025)     6e-06               MNAFSPLPPALLKRKAVVYVRQSSQSQVMQNLESQRRQYDLVDAARQHGFRRVEVIDDDLGLSASGAVARPGFERLVAWLCAGDVGAVLCFDASRLARNGRDWHHLLELCGLVDARVIDQDGVYNPCSPNDRLLLGMKGTISEFELGIIRARMLDAARAKARRGELRISVPIGYIWYRDAGLGFDPDLRVQEAVRLIFSRFRELRSGRQVLLSLTEDKLCFPRPTDGRNTTTFDWTPIRYRNVISVLKNPFYAGVYAYGKSEKRTEIIDGRARKTYGHGKPKEEWEVFLKDHHDGYIEWDEYERNQALLAANAYGQKGGAKSGRGGRALLSGLLSCGRCGRRLCVAYTGKTPRPVYRCERPNLMLGLNRCLGFGGPRIDKAVAAELLRVVQPMAIEAAMQAEHMQSEARAERRRAAELDLQKAQYEAALAERRYAACDPDNRLIAATLEKNWEVALKRLEACKTRLDAEQLPDTPAKLPDLDGLAEDLQAAWNAPGVSTRARQRLARALIKDIIADVDEEARDVVLTIHWQGGQHSQLRVRKPKTGEHGCNTSEDALEVMRSMAGRWSDSDIAATLNRMGIRTGFGHTWTAHRVSSIRRVNDIHAYFSAEKSGKWLTMTEAATKLGVTNHVIRNLIKAKILPAEQVVPRAPYQIKAVDIEREDIIEAINNRRRKRPYRDPRQIALPINSIT
complement(235724..235954)         Hypothetical protein; SM11_pC0279                                                    N/A                 MRGHPRQLPKQLTRRFQMKLPTPIPPEGPRQMIMAFDSVKTRGMSPRQREAALMALAMLLMEAACVAEKEAPHERV
236094..236225                     hypothetical protein; SM11_pC0280                                                    N/A                 MRDRPAFAMIDALTSHALPKKRMMWVMNGHIFADMGRMTLQWP
236216..236437                     PHAGE_Stx2_c_1717: transposase; SM11_pC0281; phage(gi209447153)                      1e-07               MAMNRRNALFAGHDEGGRNWARFASLIGTCKMNGVEPYAYLCNLFTRLANGHLAKDIDALMPWAYAARIQASQ
236670..237149                     putative transposase protein; SM11_pC0282                                            N/A                 MELRRLNGRGLSLTLARYGKPESLNTDQGSQFTSADLAEIDIVMDGKGAWRDKVFIERLWRSIKYEEVYLHAYKTVSEARAGIGRYLTYNCRRPHSSLDQQTPDQAYFNTLTPRWRQHNRGGNPLSEKPQTVQINRTTSSWAPSRAQPFVQHRAHALRA
complement(237152..238423)         PHAGE_Entero_N15: plasmid partition protein SopA; SM11_pC0283; phage(gi9630492)      2e-22               MPKPVSPPYEDETKSERIERLGRELIDRLRASGVAIKYPFPDPMTLRSFSLGEVAEILGVSDSYLRQLSTDGLGPTPELGTAGRRSYTLRQINELRAYLASARPKEALKFYPRRREGEKLQIISVAAGSARTTTAFYLAQGLALQGFRILAIDLDPRGSLSEMFGLVPKLPVRDVSMYAAMRYNDALRASINEVIRPTPFDGLGLVPGSFELSKFDFECSRHYEDATNPDVGVRMVSAIKEVEANYDVVVIHCPPEPSYLTVGAFEAATGLLVTVRPQLAEIASTAWFVRVLSHRASLIERVERPVKYFTKFLVTRHDPRDVSQQEAVALLRDSLGDDLLTATVWESDAIREARLKNRSLYELSAGAVGRSAYEQAMETLNSVNAEVMDLISEVWGRPPIYVSQASRSTTAGKAKSQSRRLSK
238630..239628                     PROPHAGE_Pseudo_KT2440: transposase, putative; SM11_pC0284; phage(gi26991145)        2e-70               MANATGRPTAPLVLSEAEREYLERQVRKHRVARSLSERCRIILRCGEGVPSKVVADELGVHEHTVGKWRRRFLKDRLDGLLDEVRPGRPRTIDDDQIAAVIERTLRSTPSDATHWSIRSMAGATGFSHTTIRRIWNAFGLQPHRTETFKLSGDPLFVDKVRDIVGLYLSPPNRALVLSVDEKSQIQALDREQPVLPMMPGVPERRTHSYVRHGTTTLFAALDVASGFVIGKCYKRHRATEFLDFLKQIDASVPSDLDVHIVMDYYATHKTASVKNWLMRRPRYHVHFTPTSASWINQVERWFAELTRKQLRRGVRTSTMQLEADIRSFHRTP
240446..240458                     attR                                                                                 N/A                 CTTTGTTTTTATT
complement(240679..240954)         PROPHAGE_Brucel_1330: ISBm1, transposase orfB; SM11_pC0285; phage(gi23501425)        4e-23               MSAFTSTRPREKGGWRRWRHGTFPWRAHEQNPRARVDAEGRPVNLRLTGGQIADCTEADALTDELGEGDILLADKGYDSNAIRAKAAERMA
complement(241121..241243)         PROPHAGE_Brucel_1330: ISBm1, transposase orfA; SM11_pC0286; phage(gi23501424)        2e-15               MTRRRYELTDHEWSILSPLLPNKPRGVPRVEDRRVPNGIL
complement(241311..242588)         PHAGE_Klebsi_phiKO2: Gp25; SM11_pC0287; phage(gi46402111)                            6e-22               MPQTVSPPHEKERTSERIRRRAKELFDRVRASGVAIDFPFPDPMTLRSFSLGEVAEILGVSHSYLRQLSIDGLGPTPELGTAGRRSYTLRQINELRAYLASARPKDALKFYPRRREGEKLQIISVGGSASTTTAFYLVQGLALQGFRVLAVDLDRRGSFSGMFGYTASTTPVYNKSIYAALRCDDDRASIRTVIRPTHFDGLDIVPGSIELRRFEEERLRRYLSGASRNPDANSRLVSAIEEVEGNYDVVVIAGAPVRDGLGPVALEAATGVLVTVHPQLDDVASTAMSLSIFSEYVRRIEEAGKSEDYDFFKFLVTRHDPRDVAEQETIALLRGSLGDDLLTAIVWESDAIGYAGLKNRSLYELSAGAVGRSAYEQAMETLNSVNAEVMDIISEVWGRPPIYVSQASRSTTAGKAKSRSKRSRS
complement(243221..243910)         transcriptional regulatory protein; SM11_pC0288                                      N/A                 MYSRHEHKLGWDESKVGKVYKALKKIIVNCEVPPCTRLDAVRISNVMNTSVVPVREVLIQLEIEEYIMSSFNNGYYTKKLDPQKLSDQLDFIMMVLKHVFRENLYEHSTFVVLPSWTDYDLIREFQQSFYERIAKASNNRIMRDLVHEYNVRTRYIRWLDLHQPERLSCIRDDMSELLELLDKRDNDAAIANVDRQFSAMISTVPKLVLEGNRRAGNTKESWLETLSKL
complement(244135..244266)         hypothetical protein; SM11_pC0289                                                    N/A                 MQLKHRQDASCDTNERYSASARAKKALQFCPWRREAKKSQIIS
244874..246430                     Hypothetical protein; SM11_pC0290                                                    N/A                 MFAVQGDAGAVTAIASGISFDDHGDIDVEAPKLTGAEIVGQKPSHLVEHDGEFAAFFDGEGVARIISEKAVLQGKSDFREVKTDAPQHGVAVAYGSHVLLSEPNREKPDELPVGIRTVDKARTQVGDIAECPDLHGEASSGNILAFACATGLLVVTHGESASDIRHLPYADSLPDGKSTTLIGGRGLQYFLGNYGPDKVVLIDPTAESDAFRLIELPTRRVHFAVDPVRPKFAYVFTEDGQLHQLDIVAGKIANSLKLTDPYSVDGHWNDPRPRIAVAGDNVVVTDPLAGKLHLVSAGSFTRTGEIAVEGKPFNIVAVGGSGKVHDHTAEKVHAHSHDPAVQQIYKGHFEDNQVQDRTLSDWAGDWQSVYPYLKDGTLDPVMAHKAESADQSADEYRAYYEIGYRTNVERIKIDGDTVTFFEGEKPLEARYVSDGYEILTYEKGNRGVRFIFKKSDGDADAPEFIQFSDHKIAPEAADHYHLYWGNDRAALLEEVTNWPTYYPSSLSAKQIVEEMIAH
246508..247617                     putative cobalamin biosynthesis protein; SM11_pC0291                                 N/A                 MLDTAKSSNRLPVTVLSGFLGAGKTTLLNHVLNNREGRRVAVIVNDMSEVNIDAALVRDGGANLSRTDEKLVEMTNGCICCTLRDDLLQEVRRLSEDGRFDYLLIEGTGIAEPLPVATTFDFRDENGESLSDVSRLDTMVTVVDAANLLKDYSSHDFLRDRGEVAGEADDRALVDLLVEQIEFADVIVLNKVSDTPASDLDLARKIVRSLNPDAELIETDFAQVLLDKVLNTGRFDFEKAEQHPLWFKELNGFKDHVPEIEEYGIRSFVYRERRPFDPMKLKAFINKSWPGVVRAKGFFWLATRPHYVGEISQAGALIRTGKRGLWWASVPKPQWPDHPEWKAAMKPYLDPIWGDRRPRDRLHRLRPDG
247729..248139                     Integrase-like protein y4lS; SM11_pC0292                                             N/A                 MSVEAPAGFRTGDVGNAIHWLAARHCADVPFATAMNRRCNGVSRRSGIPSTHLQRPPTEDSSRRNPASPVPRFLAAAMPSACRSRTSTAAGKAFFDMLGVFAEFETNLRRNGQEHAVAKVPLCGRTFAPDIATLVG
