Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region,
   the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.

Method 2:
1. If the number of certain phage organism in this table  is more than 50% of the total number of CDS of the region, that phage 
   organism is considered as the major potential phage for that region; the percentage of the total number
   of that phage organism in this table in the  total number of proteins of the region is calculated and 
   then multipled by 100; the percentage of the length of that phage organism in this table in the length 
   of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).

Method 3:
1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber',
   'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased 
   by 10 for each keyword found.
2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
3. If there are at least 40 proteins in the region, the score will be increased by 10.
4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of
   the total number of proteins in the region, the score will be increased by 10.

Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
   


Totally 7 intact prophage regions have been identified.




gi|295054830|ref|CP001918.1|  Enterobacter cloacae subsp. cloacae ATCC 13047, complete genome. .5314581, gc%: 54.79%
                                  REGION         REGION_LENGTH            COMPLETENESS(score)           SPECIFIC_KEYWORD                             REGION_POSITION          TRNA_NUM                 TOTAL_PROTEIN_NUM       PHAGE_HIT_PROTEIN_NUM            HYPOTHETICAL_PROTEIN_NUM         PHAGE+HYPO_PROTEIN_PERCENTAGE    BACTERIAL_PROTEIN_NUM            ATT_SITE_SHOWUP                  PHAGE_SPECIES_NUM                MOST_COMMON_PHAGE_NAME(hit_genes_count)    FIRST_MOST_COMMON_PHAGE_NUM      FIRST_MOST_COMMON_PHAGE_PERCENTAGE   GC_PERCENTAGE                 
                                 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
                                  1              21Kb                     incomplete(10)                NA                                           227615-248675            4                        18                      15                               2                                94.4%                            1                                no                               1                                PHAGE_Entero_EF62phi(25),PHAGE_Synech_S_CRM01(1),PHAGE_Invert_22(1),PHAGE_Lausan(1),PHAGE_Phaeoc_virus(1),PHAGE_Marseillevirus(1),PHAGE_Cafete_BV_PW1(1),PHAGE_Invert_iridescent_virus_3(1),PHAGE_Megavi_lba(1)   15                               138.88%                          53.33%                        
                                  2              30.6Kb                   incomplete(40)                tail,transposase                             332849-363469            0                        30                      22                               4                                86.6%                            4                                no                               8                                PHAGE_Entero_EF62phi(35),PHAGE_Megavi_chiliensis(2),PHAGE_Megavi_lba(2),PHAGE_Mycoba_Adjutor(1),PHAGE_Ectoca_siliculosus_virus_1(1),PHAGE_Mycoba_PBI1(1),PHAGE_Lactob_KC5a(1),PHAGE_Shigel_SfII(1),PHAGE_Ostreo_2(1),PHAGE_Ostreo_virus_OsV5(1),PHAGE_Pseudo_PaBG(1),PHAGE_Entero_EF62phi(1),PHAGE_Aeromo_44RR2_8t(1),PHAGE_Aeromo_31(1),PHAGE_Pandor_dulcis(1)   15                               116.66%                          57.01%                        
                                  3              19.7Kb                   questionable(70)              integrase,transposase                        505271-525014            0                        28                      9                                17                               92.8%                            2                                yes                              8                                PHAGE_Entero_EF62phi(4),PHAGE_Entero_Sf6(2),PHAGE_Shigel_SfII(2),PHAGE_Lactob_prophage_Lj965(1),PHAGE_Caulob_CcrKarma(1),PHAGE_Entero_RB49(1),PHAGE_Salmon_c341(1),PHAGE_Cyanop_SS120_1(1),PHAGE_Entero_Phi1(1),PHAGE_Caulob_CcrMagneto(1),PHAGE_Lactob_prophage_Lj928(1),PHAGE_Caulob_CcrSwift(1),PHAGE_Burkho_Bcep176(1),PHAGE_Achole_L2(1),PHAGE_Stx2_converting_1717(1),PHAGE_Caulob_phiCbK(1),PHAGE_Entero_HK225(1)   2                                14.28%                           51.70%                        
                                  4              16.2Kb                   questionable(80)              transposase,integrase,head                   682051-698280            0                        23                      15                               8                                100%                             0                                yes                              6                                PHAGE_Entero_P4(7),PHAGE_Entero_EF62phi(2),PHAGE_Entero_N15(1),PHAGE_Erwini_ENT90(1),PHAGE_Strept_phiBT1(1),PHAGE_Serrat_Eta(1),PHAGE_Salmon_SP_004(1),PHAGE_Strept_phiC31(1),PHAGE_Stenot_S1(1),PHAGE_Entero_HK022(1),PHAGE_Yersin_L_413C(1),PHAGE_Entero_SfV(1),PHAGE_Cronob_ENT39118(1),PHAGE_Entero_cdtI(1),PHAGE_Salmon_Fels_1(1),PHAGE_Strept_TG1(1),PHAGE_Stx2_converting_1717(1),PHAGE_Entero_P2(1),PHAGE_Entero_phiP27(1),PHAGE_Entero_fiAA91_ss(1),PHAGE_Rhodob_RcapNL(1),PHAGE_Xantho_vB_XveM_DIBBI(1),PHAGE_Burkho_KL3(1)   8                                30.43%                           51.16%                        
                                  5              26.6Kb                   incomplete(10)                NA                                           780491-807117            0                        24                      17                               3                                83.3%                            4                                no                               6                                PHAGE_Entero_EF62phi(28),PHAGE_Cronob_vB_CsaM_GAP32(1),PHAGE_Cronob_vB_CsaM_GAP31(1),PHAGE_Vibrio_11895_B1(1),PHAGE_Aeromo_phiAS5(1),PHAGE_Vibrio_vB_VpaS_MAR10(1),PHAGE_Bacill_SPBc2(1),PHAGE_Entero_EPS7(1),PHAGE_Burkho_phi1026b(1),PHAGE_Cafete_BV_PW1(1),PHAGE_Bordet_BPP_1(1),PHAGE_Halocy_JM_2012(1),PHAGE_Helico_KHP40(1),PHAGE_Yersin_phiR201(1),PHAGE_Aeromo_Aeh1(1),PHAGE_Pseudo_AF(1)   12                               116.66%                          55.92%                        
                                  6              12Kb                     incomplete(30)                transposase                                  1147660-1159741          0                        11                      10                               0                                90.9%                            1                                no                               3                                PHAGE_Entero_EF62phi(26),PHAGE_Stx2_converting_1717(1)   8                                236.36%                          57.79%                        
                                  7              24.5Kb                   incomplete(10)                NA                                           1174671-1199205          0                        25                      17                               6                                92%                              2                                no                               3                                PHAGE_Entero_EF62phi(34),PHAGE_Bacill_phiNIT1(1),PHAGE_Staphy_Twort(1),PHAGE_Pseudo_F116(1),PHAGE_Prochl_MED4_213(1),PHAGE_Lactob_LP65(1),PHAGE_Entero_P1(1),PHAGE_Bacill_SPO1(1),PHAGE_Vibrio_12A4(1),PHAGE_Vibrio_vB_VpaM_MAR(1),PHAGE_Vibrio_VHML(1),PHAGE_Bacill_CampHawk(1),PHAGE_Pseudo_YuA(1),PHAGE_Bacill_phiAGATE(1),PHAGE_Pseudo_MP1412(1)   15                               136%                             55.05%                        
                                  8              55.3Kb                   intact(130)                   integrase,lysin,lysis,transposase,terminase,head,coat,tail     1321860-1377170          3                        63                      55                               3                                92%                              5                                yes                              24                               PHAGE_Cronob_ENT47670(16),PHAGE_Salmon_vB_SosS_Oslo(15),PHAGE_Escher_HK639(14),PHAGE_Salmon_SPN3UB(13),PHAGE_Vibrio_pYD38_A(10),PHAGE_Salmon_E1(9),PHAGE_Entero_ES18(9),PHAGE_Pseudo_phi297(8),PHAGE_Entero_EF62phi(6),PHAGE_Stx2_converting_II(5),PHAGE_Stx2_converting_I(5),PHAGE_Pectob_ZF40(5),PHAGE_Salmon_vB_SemP_Emek(5),PHAGE_Erwini_phiEt88(4),PHAGE_Entero_BP_4795(4),PHAGE_Stx2_converting_1717(4),PHAGE_Entero_933W(4),PHAGE_Entero_HK225(3),PHAGE_Stx1_converting(3),PHAGE_Entero_lambda(3),PHAGE_Entero_HK544(3),PHAGE_Acinet_Bphi_B1251(3),PHAGE_Entero_HK140(3),PHAGE_Vibrio_pYD21_A(3),PHAGE_Stx2_converting_86(3),PHAGE_Escher_TL_2011c(3),PHAGE_Entero_P22(2),PHAGE_Salmon_ST64B(2),PHAGE_Entero_mEpX1(2),PHAGE_Cronob_phiES15(2),PHAGE_Escher_HK75(2),PHAGE_Entero_mEp213(2),PHAGE_Entero_mEp460(2),PHAGE_Entero_ST64T(2),PHAGE_Entero_JSE(2),PHAGE_Salmon_SE1(2),PHAGE_Marino_P12026(2),PHAGE_Vibrio_VBM1(2),PHAGE_Pseudo_PAJU2(2),PHAGE_Entero_P1(2),PHAGE_Salmon_ST160(2),PHAGE_Entero_ST104(2),PHAGE_Escher_P13374(2),PHAGE_Cronob_vB_CsaM_GAP32(1),PHAGE_Burkho_Bcep22(1),PHAGE_Entero_mEp235(1),PHAGE_Haemop_Aaphi23(1),PHAGE_Gifsy_1(1),PHAGE_Escher_Cba120(1),PHAGE_Entero_HK542(1),PHAGE_Burkho_KS9(1),PHAGE_Entero_N15(1),PHAGE_Escher_vB_EcoP_G7C(1),PHAGE_Erwini_PEp14(1),PHAGE_Salmon_SPN9CC(1),PHAGE_Entero_EcoDS1(1),PHAGE_Cronob_ESP2949_1(1),PHAGE_Escher_KBNP21(1),PHAGE_Entero_cdtI(1),PHAGE_Burkho_BcepMigl(1),PHAGE_Entero_VT2_Sakai(1),PHAGE_Salmon_SPN1S(1),PHAGE_Bacter_APSE_2(1),PHAGE_Entero_HK446(1),PHAGE_Entero_Min27(1),PHAGE_Shigel_SfIV(1),PHAGE_Pseudo_vB_PaeS_PMG1(1),PHAGE_Klebsi_phiKO2(1),PHAGE_Entero_K1F(1),PHAGE_Entero_mEp390(1),PHAGE_Entero_mEp237(1),PHAGE_Entero_HK633(1),PHAGE_Pseudo_F116(1),PHAGE_Salmon_c341(1),PHAGE_Rhizob_16_3(1),PHAGE_Yersin_PY54(1),PHAGE_Entero_HK630(1),PHAGE_Entero_epsilon15(1)   16                               25.39%                           51.74%                        
                                  9              20.3Kb                   incomplete(10)                NA                                           1445004-1465309          1                        21                      15                               2                                80.9%                            4                                no                               4                                PHAGE_Entero_EF62phi(32),PHAGE_Plankt_PaV_LD(1),PHAGE_Prochl_P_SSM3(1),PHAGE_Synech_S_CRM01(1),PHAGE_Lister_B054(1),PHAGE_Synech_metaG_MbCM1(1),PHAGE_Acanth_moumouvirus(1),PHAGE_Clostr_phiCP7R(1),PHAGE_Megavi_chiliensis(1),PHAGE_Pseudo_PaBG(1),PHAGE_Clostr_phiZP2(1),PHAGE_Synech_S_SSM5(1),PHAGE_Clostr_phiCPV4(1),PHAGE_Acanth_mimivirus(1),PHAGE_Megavi_lba(1)   12                               152.38%                          55.88%                        
                                  10             56.5Kb                   intact(150)                   integrase,terminase,portal,head,transposase,tail     1680838-1737384          0                        67                      53                               12                               97%                              2                                yes                              20                               PHAGE_Entero_HK225(16),PHAGE_Entero_mEp237(14),PHAGE_Entero_c_1(11),PHAGE_Entero_mEp213(10),PHAGE_Entero_mEp390(10),PHAGE_Entero_N15(9),PHAGE_Gifsy_2(9),PHAGE_Entero_mEp460(7),PHAGE_Entero_cdtI(6),PHAGE_Escher_HK639(6),PHAGE_Entero_mEp235(5),PHAGE_Cronob_phiES15(5),PHAGE_Salmon_SPN3UB(5),PHAGE_Entero_HK630(5),PHAGE_Entero_HK629(4),PHAGE_Gifsy_1(4),PHAGE_Entero_mEpX1(3),PHAGE_Entero_HK542(3),PHAGE_Burkho_BcepMigl(3),PHAGE_Entero_HK022(3),PHAGE_Entero_mEpX2(3),PHAGE_Salmon_ST64B(2),PHAGE_Escher_TL_2011b(2),PHAGE_Burkho_BcepIL02(2),PHAGE_Escher_HK75(2),PHAGE_Stx2_converting_II(2),PHAGE_Cronob_ENT39118(2),PHAGE_Burkho_DC1(2),PHAGE_Cronob_ENT47670(2),PHAGE_Entero_VT2_Sakai(2),PHAGE_Stx1_converting(2),PHAGE_Salmon_Fels_1(2),PHAGE_Entero_HK140(2),PHAGE_Pectob_ZF40(2),PHAGE_Stx2_converting_1717(2),PHAGE_Entero_phiP27(2),PHAGE_Entero_HK633(2),PHAGE_Stx2_converting_86(2),PHAGE_Escher_D108(1),PHAGE_Burkho_Bcep22(1),PHAGE_Mycoba_Job42(1),PHAGE_Lister_A118(1),PHAGE_Vibrio_12A4(1),PHAGE_Sodali_SO_1(1),PHAGE_Haemop_Aaphi23(1),PHAGE_Pseudo_vB_Pae_Kakheti25(1),PHAGE_Lister_A006(1),PHAGE_Entero_RTP(1),PHAGE_Staphy_37(1),PHAGE_Mycoba_Phelemich(1),PHAGE_Erwini_ENT90(1),PHAGE_Entero_HK97(1),PHAGE_Staphy_EW(1),PHAGE_Burkho_KL1(1),PHAGE_Entero_YYZ_2008(1),PHAGE_Cronob_ESP2949_1(1),PHAGE_Entero_TLS(1),PHAGE_Entero_NJ01(1),PHAGE_Mycoba_Wanda(1),PHAGE_Shigel_SfII(1),PHAGE_Salmon_SPN1S(1),PHAGE_Entero_phiFL1A(1),PHAGE_Pseudo_AF(1),PHAGE_Ralsto_phiRSA1(1),PHAGE_Entero_HK446(1),PHAGE_Escher_KBNP135(1),PHAGE_Bacill_vB_BceM_Bc431v3(1),PHAGE_Shigel_SfIV(1),PHAGE_Klebsi_phiKO2(1),PHAGE_Entero_Mu(1),PHAGE_Entero_HK106(1),PHAGE_Entero_HK544(1),PHAGE_Salmon_vB_SosS_Oslo(1),PHAGE_Salmon_SP_058(1),PHAGE_Mycoba_Reprobate(1),PHAGE_Salico_CGphi29(1),PHAGE_Pseudo_73(1),PHAGE_Entero_phiEco32(1),PHAGE_Entero_P1(1),PHAGE_Rhizob_16_3(1),PHAGE_Entero_phiFL2A(1),PHAGE_Staphy_TEM123(1),PHAGE_Entero_Fels_2(1),PHAGE_Escher_P13374(1)   17                               23.88%                           50.34%                        
                                  11             16.6Kb                   incomplete(10)                NA                                           1792351-1808981          0                        17                      12                               0                                70.5%                            5                                no                               2                                PHAGE_Entero_EF62phi(40),PHAGE_Pseudo_D3(1),PHAGE_Parame_bursaria_Chlorella_virus_FR483(1),PHAGE_Pseudo_PAJU2(1),PHAGE_Lymant_dispar_MNPV(1)   11                               235.29%                          52.85%                        
                                  12             18.8Kb                   incomplete(40)                tail,transposase                             2081270-2100138          0                        19                      16                               3                                100%                             0                                no                               8                                PHAGE_Entero_EF62phi(21),PHAGE_Invert_22(1),PHAGE_Stx2_converting_I(1),PHAGE_Entero_Min27(1),PHAGE_Megavi_chiliensis(1),PHAGE_Pectob_My1(1),PHAGE_Vibrio_VBP47(1),PHAGE_Stx2_converting_II(1),PHAGE_Pandor_dulcis(1),PHAGE_Acanth_moumouvirus(1),PHAGE_Entero_EPS7(1),PHAGE_Burkho_phi1026b(1),PHAGE_Entero_VT2_Sakai(1),PHAGE_Synech_S_SM2(1),PHAGE_Stx2_converting_1717(1),PHAGE_Tricho_ni_ascovirus_2c(1),PHAGE_Stx1_converting(1),PHAGE_Acanth_mimivirus(1),PHAGE_Megavi_lba(1)   9                                110.52%                          53.86%                        
                                  13             22.5Kb                   incomplete(20)                protease                                     2271508-2294062          0                        23                      18                               1                                82.6%                            4                                no                               6                                PHAGE_Entero_EF62phi(38),PHAGE_Pseudo_PaBG(2),PHAGE_Acinet_Acj9(1),PHAGE_Acinet_Acj61(1),PHAGE_Mycoba_Astraea(1),PHAGE_Pectob_phiTE(1),PHAGE_Bacill_phi105(1),PHAGE_Bathyc_BpV1(1),PHAGE_Mycoba_ET08(1),PHAGE_Equid_herpesvirus_1(1),PHAGE_Mycoba_Myrna(1),PHAGE_Mycoba_ArcherS7(1),PHAGE_Thermo_THSA_485A(1),PHAGE_Entero_EF62phi(1),PHAGE_Mycoba_Cali(1),PHAGE_Acinet_ZZ1(1)   13                               165.21%                          56.23%                        
                                  14             16.6Kb                   incomplete(20)                tail                                         2457742-2474405          0                        19                      14                               3                                89.4%                            2                                no                               4                                PHAGE_Entero_EF62phi(31),PHAGE_Bacill_0305phi8_36(2),PHAGE_Cronob_vB_CsaM_GAP32(1),PHAGE_Sodali_phiSG1(1),PHAGE_Entero_vB_KleM_RaK2(1),PHAGE_Mollus_contagiosum_virus_subtype_1(1),PHAGE_Burkho_phiE255(1),PHAGE_Bacill_SPO1(1),PHAGE_Bacill_SPBc2(1),PHAGE_Fowlpo_virus(1),PHAGE_Bacill_CampHawk(1),PHAGE_Canary_virus(1)   11                               163.15%                          53.56%                        
                                  15             44.5Kb                   incomplete(50)                transposase,integrase                        2508833-2553341          0                        32                      20                               9                                90.6%                            3                                yes                              7                                PHAGE_Entero_EF62phi(15),PHAGE_Thermu_phiYS40(2),PHAGE_Thermu_TMA(2),PHAGE_Entero_phiFL3A(1),PHAGE_Burkho_Bcep22(1),PHAGE_Bacill_vB_BceM_Bc431v3(1),PHAGE_Pseudo_YuA(1),PHAGE_Provid_Redjac(1),PHAGE_Pseudo_MP1412(1),PHAGE_Entero_phiFL2A(1),PHAGE_Entero_WV8(1),PHAGE_Burkho_BcepNazgul(1),PHAGE_Hemile_nucleopolyhedrovirus(1),PHAGE_Helico_armigera_granulovirus(1),PHAGE_Burkho_Bcep176(1),PHAGE_Acanth_moumouvirus(1),PHAGE_Pieris_rapae_granulovirus(1),PHAGE_Entero_phiFL1A(1),PHAGE_Helico_armigera_multiple_nucleopolyhedrovirus(1),PHAGE_Agroti_segetum_granulovirus(1),PHAGE_Megavi_lba(1)   11                               46.87%                           51.79%                        
                                  16             23Kb                     incomplete(10)                NA                                           2581302-2604358          0                        22                      18                               2                                90.9%                            2                                no                               4                                PHAGE_Entero_EF62phi(36),PHAGE_Pseudo_PaBG(2),PHAGE_Clostr_phiCTP1(1),PHAGE_Prochl_MED4_213(1),PHAGE_Pseudo_Lu11(1),PHAGE_Vibrio_12B3(1),PHAGE_Human_herpesvirus_8(1),PHAGE_Pseudo_phiKZ(1),PHAGE_Entero_EF62phi(1),PHAGE_Pseudo_EL(1),PHAGE_Ralsto_RSL1(1)   15                               163.63%                          54.47%                        
                                  17             16.2Kb                   incomplete(10)                NA                                           2862353-2878575          0                        19                      15                               2                                89.4%                            2                                no                               4                                PHAGE_Entero_EF62phi(33),PHAGE_Pseudo_OBP(1),PHAGE_Cronob_vB_CsaM_GAP32(1),PHAGE_Rhodov_RS1(1),PHAGE_Entero_vB_KleM_RaK2(1),PHAGE_Rhodob_RC1(1),PHAGE_Acanth_moumouvirus(1),PHAGE_Megavi_chiliensis(1),PHAGE_Pectob_phiTE(1),PHAGE_Cronob_CR3(1),PHAGE_Salmon_7_11(1),PHAGE_Megavi_lba(1),PHAGE_Cronob_vB_CsaP_GAP52(1)   12                               173.68%                          55.98%                        
                                  18             47.9Kb                   intact(130)                   tail,transposase,terminase,capsid,integrase     2878750-2926690          0                        50                      39                               6                                90%                              5                                yes                              14                               PHAGE_Vibrio_8(18),PHAGE_Aeromo_phiO18P(18),PHAGE_Haemop_HP2(17),PHAGE_Entero_EF62phi(17),PHAGE_Haemop_HP1(16),PHAGE_Vibrio_kappa(12),PHAGE_Pasteu_F108(10),PHAGE_Vibrio_K139(8),PHAGE_Entero_PsP3(5),PHAGE_Entero_Fels_2(5),PHAGE_Erwini_ENT90(4),PHAGE_Salmon_RE_2010(4),PHAGE_Entero_Sf6(2),PHAGE_Shigel_SfII(2),PHAGE_Bacter_APSE_2(1),PHAGE_Erwini_phiEaH2(1),PHAGE_Escher_KBNP135(1),PHAGE_Salmon_SP_004(1),PHAGE_Erwini_phiEa104(1),PHAGE_Shigel_SfIV(1),PHAGE_Acyrth_pisum_secondary_endosymbiont_1(1),PHAGE_Yersin_L_413C(1),PHAGE_Entero_HK629(1),PHAGE_Entero_Felix_01(1),PHAGE_Stx2_converting_1717(1),PHAGE_Burkho_KS9(1),PHAGE_Erwini_phiEa21_4(1),PHAGE_Entero_fiAA91_ss(1),PHAGE_Synech_KBS_M_1A(1),PHAGE_Entero_phiEco32(1),PHAGE_Entero_P1(1),PHAGE_Vibrio_pYD21_A(1),PHAGE_Burkho_phiE12_2(1),PHAGE_Pseudo_119X(1),PHAGE_Pseudo_PaP2(1),PHAGE_Entero_HK630(1)   17                               36%                              53.96%                        
                                  19             19.9Kb                   incomplete(20)                coat                                         3103354-3123280          0                        19                      15                               1                                84.2%                            3                                no                               3                                PHAGE_Entero_EF62phi(32),PHAGE_Papiin_herpesvirus_2(1),PHAGE_Synech_S_CRM01(1),PHAGE_Cafete_BV_PW1(1),PHAGE_Stx2_converting_1717(1),PHAGE_Synech_S_CBS4(1),PHAGE_Murid_herpesvirus_1(1),PHAGE_Synech_S_PM2(1)   13                               168.42%                          55.22%                        
                                  20             10.1Kb                   incomplete(20)                transposase                                  3185733-3195911          0                        10                      7                                2                                90%                              1                                no                               3                                PHAGE_Entero_EF62phi(14),PHAGE_Ostreo_OlV1(1),PHAGE_Ostreo_2(1),PHAGE_Ostreo_OlV5(1),PHAGE_Acanth_moumouvirus(1),PHAGE_Megavi_chiliensis(1),PHAGE_Entero_EF62phi(1),PHAGE_Microm_MpV1(1),PHAGE_Entero_HK022(1),PHAGE_Acanth_mimivirus(1),PHAGE_Megavi_lba(1)   5                                140%                             57.57%                        
                                  21             33.3Kb                   intact(150)                   tail,coat,head,terminase,transposase,lysis,lysin     3244947-3278289          2                        41                      36                               4                                97.5%                            1                                no                               16                               PHAGE_Cronob_ENT47670(16),PHAGE_Salmon_vB_SosS_Oslo(13),PHAGE_Salmon_SPN3UB(11),PHAGE_Entero_ES18(11),PHAGE_Salmon_E1(10),PHAGE_Vibrio_pYD38_A(10),PHAGE_Pseudo_phi297(8),PHAGE_Pectob_ZF40(4),PHAGE_Salmon_SPN9CC(4),PHAGE_Shigel_SfII(4),PHAGE_Escher_HK639(3),PHAGE_Stx2_converting_1717(3),PHAGE_Vibrio_pYD21_A(3),PHAGE_Entero_Sf6(2),PHAGE_Entero_mEp235(2),PHAGE_Shigel_SfIV(2),PHAGE_Entero_lambda(2),PHAGE_Vibrio_VBM1(2),PHAGE_Gifsy_1(2),PHAGE_Acinet_Bphi_B1251(2),PHAGE_Salmon_ST160(2),PHAGE_Entero_HK630(2),PHAGE_Entero_P22(1),PHAGE_Salmon_SE1(1),PHAGE_Serrat_Eta(1),PHAGE_Erwini_phiEt88(1),PHAGE_Klebsi_phiKO2(1),PHAGE_Entero_K1F(1),PHAGE_Entero_mEpX1(1),PHAGE_Entero_SfV(1),PHAGE_Entero_BP_4795(1),PHAGE_Entero_HK629(1),PHAGE_Klebsi_KP15(1),PHAGE_Marino_P12026(1),PHAGE_Escher_Cba120(1),PHAGE_Cronob_phiES15(1),PHAGE_Entero_mEp237(1),PHAGE_Entero_HK633(1),PHAGE_Entero_HK225(1),PHAGE_Entero_vB_EcoM_VR7(1),PHAGE_Entero_N15(1),PHAGE_Rhodov_RS1(1),PHAGE_Entero_P1(1),PHAGE_Gifsy_2(1),PHAGE_Salmon_vB_SemP_Emek(1),PHAGE_Stx2_converting_86(1),PHAGE_Entero_EcoDS1(1),PHAGE_Escher_TL_2011c(1),PHAGE_Entero_ST104(1),PHAGE_Yersin_PY54(1),PHAGE_Entero_cdtI(1),PHAGE_Escher_phAPEC8(1),PHAGE_Entero_ST64T(1),PHAGE_Entero_RB69(1)   16                               39.02%                           52.03%                        
                                  22             51.7Kb                   questionable(80)              transposase                                  3511244-3563024          0                        52                      34                               10                               84.6%                            8                                no                               9                                PHAGE_Entero_EF62phi(68),PHAGE_Entero_P1(2),PHAGE_Megavi_chiliensis(2),PHAGE_Stx2_converting_1717(2),PHAGE_Acanth_mimivirus(2),PHAGE_Megavi_lba(2),PHAGE_Synech_S_SSM7(1),PHAGE_Cellul_phiSM(1),PHAGE_Vibrio_KVP40(1),PHAGE_Shigel_SfIV(1),PHAGE_Halovi_HCTV_1(1),PHAGE_Entero_YYZ_2008(1),PHAGE_Vibrio_nt_1(1),PHAGE_Acanth_moumouvirus(1),PHAGE_Tricho_ni_ascovirus_2c(1),PHAGE_Halovi_HVTV_1(1)   24                               130.76%                          55.16%                        
                                  23             8Kb                      incomplete(20)                tail                                         3566323-3574324          0                        8                       7                                0                                87.5%                            1                                no                               4                                PHAGE_Entero_EF62phi(5),PHAGE_Shigel_SfIV(2),PHAGE_Clostr_phiC2(1),PHAGE_Bacill_CampHawk(1),PHAGE_Microm_MpV1(1),PHAGE_Clostr_phiMMP04(1),PHAGE_Bacill_SPO1(1)   3                                62.5%                            52.55%                        
                                  24             59.8Kb                   intact(150)                   tail,terminase,head,lysin,transposase,integrase     3635881-3695747          0                        64                      54                               10                               100%                             0                                yes                              33                               PHAGE_Burkho_Bcep43(15),PHAGE_Burkho_BcepNY3(15),PHAGE_Aeromo_vB_AsaM_56(13),PHAGE_Burkho_Bcep1(12),PHAGE_Burkho_Bcep781(11),PHAGE_Xantho_OP2(9),PHAGE_Acinet_AP22(8),PHAGE_Entero_HK446(6),PHAGE_Entero_mEp235(5),PHAGE_Entero_mEp213(5),PHAGE_Entero_Sf6(4),PHAGE_Escher_HK75(4),PHAGE_Entero_HK225(4),PHAGE_Salmon_SPN9CC(4),PHAGE_Entero_ES18(4),PHAGE_Salmon_SE1(4),PHAGE_Salmon_vB_SosS_Oslo(4),PHAGE_Entero_ST104(4),PHAGE_Entero_P22(3),PHAGE_Escher_HK639(3),PHAGE_Entero_lambda(3),PHAGE_Entero_HK106(3),PHAGE_Entero_HK544(3),PHAGE_Entero_c_1(3),PHAGE_Salmon_vB_SemP_Emek(3),PHAGE_Salmon_c341(3),PHAGE_Entero_mEpX2(3),PHAGE_Entero_HK630(3),PHAGE_Salmon_epsilon34(3),PHAGE_Entero_HK629(2),PHAGE_Entero_HK97(2),PHAGE_Entero_cdtI(2),PHAGE_Shigel_SfII(2),PHAGE_Entero_ST64T(2),PHAGE_Stx2_converting_I(2),PHAGE_Shigel_SfIV(2),PHAGE_Entero_mEp237(2),PHAGE_Entero_HK633(2),PHAGE_Pseudo_PaBG(2),PHAGE_Entero_P4(1),PHAGE_Riemer_RAP44(1),PHAGE_Sinorh_PBC5(1),PHAGE_Rhodoc_E3(1),PHAGE_Entero_mEpX1(1),PHAGE_Entero_mEp234(1),PHAGE_Gifsy_1(1),PHAGE_Entero_HK542(1),PHAGE_Entero_IME10(1),PHAGE_Salmon_E1(1),PHAGE_Bacill_phi29(1),PHAGE_Salmon_PVP_SE1(1),PHAGE_Stenot_S1(1),PHAGE_Clavib_CMP1(1),PHAGE_Coryne_P1201(1),PHAGE_Lactoc_Tuc2009(1),PHAGE_Entero_vB_EcoS_ACG_M12(1),PHAGE_Mycoba_Jabbawokkie(1),PHAGE_Erwini_phiEt88(1),PHAGE_Entero_Min27(1),PHAGE_Mycoba_Che8(1),PHAGE_Myxoco_Mx8(1),PHAGE_Entero_mEp390(1),PHAGE_Entero_BP_4795(1),PHAGE_Vibrio_VBM1(1),PHAGE_Bacill_B103(1),PHAGE_Entero_HK140(1),PHAGE_Pectob_ZF40(1),PHAGE_Bacill_SPBc2(1),PHAGE_Entero_EPS7(1),PHAGE_Xantho_vB_XveM_DIBBI(1),PHAGE_Salini_CW02(1),PHAGE_Entero_P1(1),PHAGE_Cronob_vB_CsaM_GAP31(1),PHAGE_Halocy_JM_2012(1),PHAGE_Bacill_phi105(1),PHAGE_Salmon_ST160(1),PHAGE_Entero_phiFL2A(1),PHAGE_Mycoba_Wee(1),PHAGE_Entero_phiFL4A(1)   15                               23.43%                           51.54%                        
                                  25             33.2Kb                   incomplete(20)                NA                                           3717125-3750366          0                        36                      26                               4                                83.3%                            6                                no                               3                                PHAGE_Entero_EF62phi(52),PHAGE_Parame_bursaria_Chlorella_virus_FR483(2),PHAGE_Plankt_PaV_LD(1),PHAGE_Parame_bursaria_Chlorella_virus_1(1),PHAGE_Phaeoc_virus(1),PHAGE_Parame_bursaria_Chlorella_virus_AR158(1),PHAGE_Acanth_moumouvirus(1),PHAGE_Suid_herpesvirus_1(1),PHAGE_Bacill_SPBc2(1),PHAGE_Cafete_BV_PW1(1),PHAGE_Parame_bursaria_Chlorella_virus_NY2A(1),PHAGE_Campyl_CP21(1),PHAGE_Acanth_turfacea_Chlorella_virus_1(1)   24                               144.44%                          55.47%                        
                                  26             28.9Kb                   incomplete(40)                transposase,integrase                        3898178-3927135          0                        25                      9                                2                                44%                              14                               yes                              7                                PHAGE_Entero_EF62phi(8),PHAGE_Rhodov_RS1(1),PHAGE_Escher_D108(1),PHAGE_Entero_P1(1),PHAGE_Rhodob_RC1(1),PHAGE_Burkho_KS14(1),PHAGE_Entero_Mu(1),PHAGE_Entero_phiV10(1),PHAGE_Escher_TL_2011b(1),PHAGE_Ralsto_RSM3(1),PHAGE_Ralsto_RSM1(1),PHAGE_Human_herpesvirus_4(1),PHAGE_Entero_Fels_2(1),PHAGE_Salmon_SPN1S(1),PHAGE_Entero_mEp237(1),PHAGE_Entero_epsilon15(1),PHAGE_Entero_HK225(1)   3                                32%                              57.54%                        
                                  27             23.7Kb                   incomplete(20)                injection                                    3980731-4004471          0                        21                      15                               2                                80.9%                            4                                no                               3                                PHAGE_Entero_EF62phi(36),PHAGE_Ostreo_OlV1(1),PHAGE_Halocy_JM_2012(1),PHAGE_Yersin_phiYeO3_12(1),PHAGE_Pandor_dulcis(1),PHAGE_Pandor_salinus(1),PHAGE_Microm_12T(1),PHAGE_Feldma_species_virus(1),PHAGE_Macaci_herpesvirus_4(1),PHAGE_Atelin_herpesvirus_3(1),PHAGE_Human_herpesvirus_8(1),PHAGE_Bacill_SPBc2(1),PHAGE_Erwini_FE44(1),PHAGE_Erwini_vB_EamP_L1(1),PHAGE_Microm_MpV1(1),PHAGE_Bovine_herpesvirus_4(1),PHAGE_Megavi_lba(1)   13                               171.42%                          55.84%                        
                                  28             17.2Kb                   incomplete(20)                coat                                         4035969-4053217          1                        20                      12                               4                                80%                              4                                no                               2                                PHAGE_Entero_EF62phi(13),PHAGE_Pseudo_YuA(1),PHAGE_Pseudo_MP1412(1)   11                               65%                              52.10%                        
                                  29             35.1Kb                   incomplete(20)                NA                                           4093607-4128776          0                        38                      25                               8                                86.8%                            5                                no                               1                                PHAGE_Entero_EF62phi(58),PHAGE_Bacill_SP10(3),PHAGE_Bacill_BCD7(2),PHAGE_Entero_phiEF24C(2),PHAGE_Bacill_phiNIT1(1),PHAGE_Parame_bursaria_Chlorella_virus_NY2A(1),PHAGE_Mycoba_Phrux(1),PHAGE_Mycoba_Contagion(1),PHAGE_Mycoba_PegLeg(1),PHAGE_Mycoba_Dumbo(1),PHAGE_Parame_bursaria_Chlorella_virus_AR158(1),PHAGE_Mycoba_Myrna(1),PHAGE_Bacill_SPBc2(1),PHAGE_Burkho_phi1026b(1),PHAGE_Fowlpo_virus(1),PHAGE_Staphy_GH15(1),PHAGE_Mycoba_Quink(1)   25                               152.63%                          56.34%                        
                                  30             23.5Kb                   incomplete(20)                protease                                     4130588-4154173          3                        24                      20                               0                                83.3%                            4                                no                               4                                PHAGE_Entero_EF62phi(46),PHAGE_Acinet_Acj61(1),PHAGE_Mycoba_DrDrey(1),PHAGE_Pseudo_F116(1),PHAGE_Parame_bursaria_Chlorella_virus_FR483(1),PHAGE_Vibrio_VvAW1(1),PHAGE_Acinet_Ac42(1),PHAGE_Mycoba_Dumbo(1),PHAGE_Pseudo_phi297(1),PHAGE_Cafete_BV_PW1(1),PHAGE_Yersin_phiR1_RT(1),PHAGE_Mycoba_Kostya(1),PHAGE_Entero_RB69(1)   17                               191.66%                          56.22%                        
                                  31             20.5Kb                   intact(100)                   integrase,tail,transposase                   4311610-4332207          1                        24                      14                               8                                91.6%                            2                                yes                              10                               PHAGE_Entero_EF62phi(8),PHAGE_Entero_Sf6(2),PHAGE_Shigel_SfIV(2),PHAGE_Shigel_SfII(2),PHAGE_Escher_phAPEC8(2),PHAGE_Ectoca_siliculosus_virus_1(1),PHAGE_Pseudo_73(1),PHAGE_Mycoba_ScottMcG(1),PHAGE_Salmon_PVP_SE1(1),PHAGE_Mycoba_Fishburne(1),PHAGE_Cronob_vB_CsaM_GAP31(1),PHAGE_Lactoc_949(1),PHAGE_Clostr_phiCP7R(1),PHAGE_Erwini_phiEt88(1),PHAGE_Mycoba_Brujita(1),PHAGE_Clostr_phi24R(1),PHAGE_Pectob_phiTE(1),PHAGE_Yersin_L_413C(1),PHAGE_Clostr_phiCPV4(1),PHAGE_Mycoba_Butters(1),PHAGE_Bacill_0305phi8_36(1),PHAGE_Mycoba_ArcherS7(1),PHAGE_Bacill_SPBc2(1),PHAGE_Stx2_converting_1717(1),PHAGE_Entero_P2(1),PHAGE_Clostr_phiZP2(1),PHAGE_Entero_fiAA91_ss(1),PHAGE_Clostr_PhiS63(1)   3                                33.33%                           50.31%                        
                                  32             24.6Kb                   questionable(75)              virion,transposase                           4387702-4412302          0                        28                      19                               6                                89.2%                            3                                no                               4                                PHAGE_Entero_EF62phi(24),PHAGE_Cassav_brown_streak_virus(1),PHAGE_Entero_phiEco32(1),PHAGE_Shigel_SfII(1),PHAGE_Escher_KBNP135(1),PHAGE_Uganda_virus(1),PHAGE_Bacill_SPBc2(1),PHAGE_Halocy_JM_2012(1),PHAGE_Klebsi_K11(1)   16                               85.71%                           56.68%                        
                                  33             40.9Kb                   intact(150)                   protease,tail,plate,lysin,lysis,capsid       4510316-4551274          1                        50                      44                               4                                96%                              2                                yes                              7                                PHAGE_Entero_Fels_2(35),PHAGE_Salmon_RE_2010(34),PHAGE_Erwini_ENT90(20),PHAGE_Entero_PsP3(15),PHAGE_Salmon_SP_004(9),PHAGE_Yersin_L_413C(5),PHAGE_Entero_fiAA91_ss(5),PHAGE_Entero_EF62phi(5),PHAGE_Entero_P2(5),PHAGE_Ralsto_phiRSA1(3),PHAGE_Pseudo_phiCTX(3),PHAGE_Burkho_KS14(3),PHAGE_Burkho_KS5(3),PHAGE_Haemop_HP2(2),PHAGE_Sodali_phiSG1(2),PHAGE_Aeromo_phiO18P(2),PHAGE_Bacter_APSE_2(1),PHAGE_Erwini_phiEaH2(1),PHAGE_Synech_S_IOM18(1),PHAGE_Helico_1961P(1),PHAGE_Entero_lambda(1),PHAGE_Acyrth_pisum_secondary_endosymbiont_1(1),PHAGE_Pasteu_F108(1),PHAGE_Pandor_dulcis(1),PHAGE_Entero_HK629(1),PHAGE_Synech_S_CBS3(1),PHAGE_Salmon_SPN3UB(1),PHAGE_Haemop_HP1(1),PHAGE_Burkho_KL3(1),PHAGE_Entero_P1(1),PHAGE_Pseudo_PAJU2(1),PHAGE_Cyanop_PSS2(1),PHAGE_Cyanop_KBS_S_2A(1),PHAGE_Burkho_ST79(1),PHAGE_Synech_S_CBS1(1),PHAGE_Pandor_salinus(1),PHAGE_Yersin_PY54(1),PHAGE_Helico_KHP30(1),PHAGE_Entero_HK630(1),PHAGE_Helico_phiHP33(1),PHAGE_Burkho_phiE202(1)   35                               70%                              53.73%                        
                                  34             18.8Kb                   incomplete(20)                protease                                     4677416-4696239          0                        22                      15                               1                                72.7%                            6                                no                               4                                PHAGE_Entero_EF62phi(31),PHAGE_Choris_fumiferana_DEF_MNPV(1),PHAGE_Pandor_salinus(1),PHAGE_Escher_D108(1),PHAGE_Ostreo_OlV5(1),PHAGE_Choris_fumiferana_MNPV(1),PHAGE_Helico_2(1),PHAGE_Entero_Mu(1),PHAGE_Antica_gemmatalis_nucleopolyhedrovirus(1),PHAGE_Vibrio_12B12(1),PHAGE_Choris_alphabaculovirus(1),PHAGE_Pandor_dulcis(1),PHAGE_Ostreo_tauri_virus_1(1),PHAGE_Haemop_SuMu(1),PHAGE_Pseudo_JBD24(1)   12                               140.9%                           53.85%                        
                                  35             32.1Kb                   incomplete(30)                NA                                           4790540-4822646          0                        55                      44                               3                                85.4%                            8                                no                               1                                PHAGE_Entero_EF62phi(54),PHAGE_Thermu_OH2(1),PHAGE_Pandor_salinus(1),PHAGE_Lausan(1),PHAGE_Prochl_P_SSM7(1),PHAGE_Synech_S_SSM7(1),PHAGE_Burkho_phiE255(1),PHAGE_Cafete_BV_PW1(1),PHAGE_Synech_S_SKS1(1),PHAGE_Caulob_CcrColossus(1),PHAGE_Vibrio_12B8(1),PHAGE_Pandor_dulcis(1)   44                               98.18%                           50.84%                        
                                  36             17.4Kb                   incomplete(20)                envelope                                     4850891-4868356          0                        18                      11                               0                                61.1%                            7                                no                               4                                PHAGE_Entero_EF62phi(19),PHAGE_Synech_KBS_M_1A(1),PHAGE_Entero_M13(1),PHAGE_Ostreo_OlV1(1),PHAGE_Salmon_RE_2010(1),PHAGE_Synech_S_IOM18(1),PHAGE_Entero_Ike(1),PHAGE_Equid_8(1),PHAGE_Equid_herpesvirus_1(1),PHAGE_Pseudo_Pf3(1),PHAGE_Entero_I2_2(1),PHAGE_Entero_Fels_2(1),PHAGE_Ostreo_virus_OsV5(1),PHAGE_Synech_A.HR1(1),PHAGE_Ostreo_tauri_virus_1(1),PHAGE_Entero_If1(1)   7                                105.55%                          56.35%                        
                                  37             26.6Kb                   incomplete(10)                NA                                           5286532-5313216          0                        26                      23                               2                                96.1%                            1                                no                               4                                PHAGE_Entero_EF62phi(40),PHAGE_Entero_c_1(1),PHAGE_Parame_bursaria_Chlorella_virus_1(1),PHAGE_Entero_mEp213(1),PHAGE_Megavi_chiliensis(1),PHAGE_Synech_S_SKS1(1),PHAGE_Parame_bursaria_Chlorella_virus_NY2A(1),PHAGE_Synech_S_SSM5(1),PHAGE_Cyanop_P_RSM1(1),PHAGE_Entero_HK544(1),PHAGE_Parame_bursaria_Chlorella_virus_FR483(1),PHAGE_Bacill_0305phi8_36(1),PHAGE_Cyanop_S_TIM5(1),PHAGE_Parame_bursaria_Chlorella_virus_AR158(1),PHAGE_Entero_IME10(1),PHAGE_Acanth_moumouvirus(1),PHAGE_Synech_Syn19(1),PHAGE_Acanth_mimivirus(1),PHAGE_Megavi_lba(1)   20                               153.84%                          53.80%                        
