gi|315057441|ref|CP001960.1|  Campylobacter jejuni subsp. jejuni S3, complete genome. [asmbl_id: NC_000000].1681364, gc%: 30.49%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
641642..641654                     attL                                                                                 N/A                 TCGTCAAATTAAA
641880..643994                     PHAGE_Feline_virus: Gag-Pro-Pol precursor polyprotein gPr80; CJS3_0685; phage(gi9630708)     1e-05               MWVNANIFCDNNSIGLRNLQKKSKRAIENNEKILHIDTKIFSYRYTQGKGRGGKTLQIWSKPLSKEEAQLVEQGFNIEDISNTTISSKTTQEFLSKALNDDVLLKNSKALQVQNTDKTKLSENQIQINKDSLSLFAKASSKKQNLALQKAAVVKEWLHAKGKISTNDFINYINAKKIYEFKLTQNKLFAWQKEYLANGLDALIDKRENKKDDAISALGIKELFVNTLLAQKGRLNASNIHRVLNYELAKNGKLDLKDFLGKKDEFISYECVLRSMKKYLKENKLIKNIILYGEDGAISRHLPALGVSNWKVNTINEIVEIDASPLDAICKVDFINETYGLKGDECSWHKRYTIISLIDTYSGVTSFYLGFSEDSLSIARAIAKYISTYGVPKCIHSDNGKAFLSKNVKALLERLNIDYKAMPAYSGWSKPYVENKFKDLQNSLTANLVGYIGANIKERQAIEFFYSKKERRLKKGYKTNQRRLKTLEYMRECIDDYSAYFMNNKWLDRLGATPKESFEAKIEDAITIDELSLSMYLGGELKLRKVLNKGLSLNGTLFYNPKLYTHEEVFVCENLNNQNEIFCFDKQKELICVANNLDLELGVSIEEAKVARKLVNRAIKANKDKIDEQRMILEKNMEKYLALGKEKLEKVKSPKTKASNNAKKELEFSKALVSNGDFEHLSTKVIKDTKCKIPKWENAAKKAGY
644083..644940                     PHAGE_Haemop_SuMu: phage transposase; CJS3_0686; phage(gi418489040)                  1e-30               MQELSKELECFLEQSGMKPSALARAIGASASLISQIKSASYKGDVALWSKKIRDFIANHKDKQNEKPKKEQLFRSRDFSMATFVMSEAVNEKEIALIFGEAGTGKTTIINEFIKTRPQSILIEATCHTSVGVMLDELLNALKIEANSNNASKLKAIARFLKTNEKILIVDEAEYLPLKALEDLRRIADFARVPLILVGTEILYKNLMGKNKELKQLYSRICGKWMMRGLSKEESDEFFGKGYFKFSNGNFRSSAKLLKKALRLAELEECEINDELLTSASEMVIL
644937..645128                     conserved domain protein; CJS3_0687                                                  N/A                 MSFEEIAKELNLSVTRVHQIYTEALRKLKSPKNKDKWMAIFETIDLIKKEKAKKENLIQGEKK
645125..645310                     hypothetical protein; CJS3_0688                                                      N/A                 MIPMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYIAKKIIRFHLGKKLNKSA
645366..645797                     hypothetical protein; CJS3_0689                                                      N/A                 MQLSYYCFKDRKKRKMPLDTPLNTKNFKLKDKLGLNIKEQIEICNKYGITHKLYVKRKEKGWSLKEILETPKGDKRFKYIIIDDIRRNKQAVSLNSHSKFGRNVLHLGNMSKKANLHFKYSKLDHLALQNNLYQDKNGVIKAY
645871..646209                     hypothetical protein; CJS3_0690                                                      N/A                 MALVYVASPYKALAVRESQRKAQAISVAQQECLKIMRECEGFTPVSPILQFSYLDENKHRDKALQMGLELLKASDYIYMSNHKDAKYSKGMQEELALAKKLGIKELVLELPL
646206..646418                     hypothetical protein; CJS3_0691                                                      N/A                 MTSQCGKATFCDKELHSLNPPEGSATLREKKGLRIVKKRTKHAVLLRYGVVLWDYQINKFNLKGDLNANK
646405..646890                     PHAGE_Haemop_SuMu: host-nuclease inhibitor protein; CJS3_0692; phage(gi418489043)     4e-05               MQINNLEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGEIKVLSDELKYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLENLIKAIKSYGLNDCITYKEELNKDAIAELEDSTLVKLGLKRVTKDNFRIEPKIESLEIEK
646887..647066                     hypothetical protein; CJS3_0693                                                      N/A                 MRELSLATFKLLNSVFKTKTAHFNGFLELDFKNKPKLKKQSFKRKKKMTSKQKIRLKRI
647130..647402                     PHAGE_Campyl_CPX: hypothetical protein; CJS3_0694; phage(gi371670991)                1e-14               MYVNVSIDASDLEDIDAHDLAELFEDLSTKEQEEFFGIIHKDIKPLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK
647399..647785                     PHAGE_Campyl_CPX: hypothetical protein; CJS3_0695; phage(gi371670986)                4e-21               MKLQDFDFRVWDKHHKGCGNKDCKCQTKYVYGEEAKTRLSEFKEDCEIELFTGLYDKKGKKVYENDIVKVKSLYDYFLAKISIHKEGTFYFEGKNGDYIGSLIYLVEDEGYTIETIGNIHENPELLKC
647900..648079                     hypothetical protein; CJS3_0696                                                      N/A                 MSKRNGALRAFKTLLKDVLNDENGFYKHKNGKVNIAKLSRVSGLSRSFLKKELYIRGLL
648076..648504                     hypothetical protein; CJS3_0697                                                      N/A                 MSPKQAMLRKQLLAKIHMHKEYLYYKENNAWQDFLALRFEVLSSKDLSIDELKILLDIFDGKIKDDINFVPDFKGRLMLKKASSNKQFFYLKALLKQTKMPIFSFYKLCKKTLKKDIYSLQTLSKKDCTIMLVVLEKIAKTK
648556..648747                     hypothetical protein; CJS3_0698                                                      N/A                 MICPRCANEKTKVLKTIKSDTNERFRRCLKCGYTFMSIELIKVDNWAKYYIKETQKGLFDEEL
648734..649213                     hypothetical protein; CJS3_0699                                                      N/A                 MKSFELKGLENFLKKCENLENEQKQIILKEIIAETLYKESKENLEKEQDSNAKKWAPLKQSTLNSRKAQKIMHTKKLFATGSMQSSLHSGVENDRAFVALNATYKGFAYASVHQFGSKNVIARPFLPIDENLNINKRVARAMEEETKDMLWTLFKQTLK
complement(649352..650485)         PHAGE_Pseudo_MP38: virion morphogenesis protein; CJS3_0700; phage(gi215479954)       8e-31               MSNIFNKSVDEAYSYLENKGLKISFKYHEIKKQAHDRAFSAAGIMKTDVLNDLHEELKKAMKEGRNFNEFKNNLKELLTSKGWYGKKEITNPKTGEKRTININANRLKTIYHTNMQSAYAKARAKQLSTYSYKTYWVYKCALLEDSRSEHKKMHNCAIHRDDPFWKTSFPPNDYNCKCKVIAVSEKEARAKYKILENPKSIASKNFAYDKRENSQIPKETRISLDESLENLPKIQNYENLSDKELIDKVYEAFNVKKGDLLVDKIGDVISLDDDFFYDKKKQTTKIKKQNRHFYLDYFPKLINDPDEIRLSMDADPRFKGFTKKTYIKYFYDNGVKALVMVLNQKGNQINNKTMFLSEDNSYFKEILNQGKTIYKKQ
complement(650478..651857)         PHAGE_Haemop_SuMu: portal protein gp29; CJS3_0701; phage(gi418489080)                2e-15               MRILNKTARKSVASSVDFDSIIAALNSENFSELISIYDYFKRFDPQIASEVMKRRFKMCSFPMFITCKDETQRIFLQNYISKSDFRKFVFEMSAAVVYGFAAFLLEWKVKDLNVFPKLKYISPRFFSMDDKERLFIYNESKKLFVDECDDIFLHLHPSDSGSFIEQSLFYNVVSIAVLKQLAMSKNISYLDNLSVPPIIAKTTNANSDKEIEELLMQLSNLRSASVGIFNKDDMVELLNSGLSTSTFTDFLRYCDEAISKLISGQVLAGNAVQNGTQALGNVHEEVRLNVGEMDTLFLSKSIQKLLEQILKLNFAKPAEFEFVFDTNKEVDEQYLAGVYSTISSMGYEIPAEFLAKTFRIEGLKKKEVSTENYAFNSLMLEKNNLLKDKIELNSSAEDEISDEIYEKIKAFWEECQSYEELEERIFKEYPNISFEKLKESLDKKIALASMQALLDTGNE
complement(651854..653380)         PHAGE_Haemop_SuMu: terminase; CJS3_0702; phage(gi418489081)                          5e-55               MDKLEINEIKSRLKALKFNHKEDKNLRRDRILKQGFKAFVFEYFPHHINFIKKESSNFRNFIYDNIDELEKKNNHLCFKAYRGSAKTTLLVRLFTLYSLLSNKKQYALIISSTLDIASESIASLKTELEENAKLINDFEIKLGDEWTSEAIVFTSFKIHKKIKAFGSGKKIRGTNYLGKRPDLIICDDIENDENVESKTQRDKLYKWFNKAILKLVARTQENYLYLVVGTILHQDSLLNRLNDDKRFLIYDFPLVLSFPDKLDLIDKNNILKSDLKGFKLDDENLNKIEILKEYFADTQSFFSEYQNKALSTENAIFSEYKIIEKEQDFDLVVLGIDPALGKAKGDYFAIAELKKVDKNKFHLKASGYKISPSKMIDVILKLYIKYLSLGKIVKIAIETIAFQEFFKDKLKEEALKLGIILSICELKNKVAKELRIDSLAPYINDGTILIDNNSNLLIEEMLTYPKAAHDDLLDASEMAFRIACSAANADYKAINRILSKRKIKKGFL
complement(653470..653784)         hypothetical protein; CJS3_0703                                                      N/A                 MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFLKGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKLDKL
complement(653787..653909)         hypothetical protein; CJS3_0704                                                      N/A                 MKENNKMINQKSIAKDLLIALLFSTFALALLYLFEIFTRN
complement(653896..654144)         lipoprotein, putative; CJS3_0705                                                     N/A                 MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKLPLKPLDKKDLESAKEISKYYLEVENIAKLCTGEKDERK
complement(654141..654482)         PHAGE_Helico_1961P: hypothetical protein; CJS3_0706; phage(gi422935793)              2e-07               MFSFILSRFLSPSKIAFFVLIALCGFLYLKNNALALENENLKLKALHFSNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCESELKAYKELFNILGAKK
complement(654493..654882)         PHAGE_Entero_5: 43; CJS3_0707; phage(gi108862028)                                    3e-23               MKNNPYFKESEFKCKCGKCELPQNVPSDELIDILCEIREHYNAPVIINSGYRCKEHNAEVGGAPKSQHAIGSAADFVVKGVKTEEVHQYVLITYGERGLGIAIKHNFNDPYAGFVHLDTRGKKARWTYP
complement(654872..655237)         hypothetical protein; CJS3_0708                                                      N/A                 MTLDSVSKDLLKHFNAIGIANYEDVKQGGLYLMLESLTSINHHKDSVNFSLIFSSHTFNKDKDSLIKKIDELRLKLFEFDTSKKLLSSIESGFISSSLFAYRLKFNIEIFSKPEGEEENEK
complement(655234..655587)         hypothetical protein; CJS3_0709                                                      N/A                 MIALLSPPKMLALTLKELALMKRAQQNLANIDEITREVVAKAAKDADDICKNKDIADFIWEDFAYIRIKIYLKIVLDDEDKILLDNALKRIENAPLIDKEGNLSSLRLKIMQRKDRF
complement(655584..655895)         hypothetical protein; CJS3_0710                                                      N/A                 MDNIVSANKLRNQNAILNPKENDDQKALFLKEKQEFEKEKALFLKEKQEFEKEKALFLKEKQEFEKEKALFLKEKQKTLEENEETIINESLKNKETKKGKQDK
complement(655895..656782)         PHAGE_Pseudo_D3112: putative major head subunit protein; CJS3_0711; phage(gi38229147)     1e-46               MAFTELSTAYMQAVNKGFSTIFNNALEGGNKDYEKFAMVTNANSLVVEYQFLASLPKMREWIGDRQFSKLKGQGYTITKKDWESSIEVPRDVITYDNLGIIRPQIEMLAYEVQNHYNDLIFTLLEQNQTCFDGKAFFANDHDIGGVSFSNLGDKKLSAASLMEARKNMRALTNESGRTLNINPALLVVPLSLEAKALEIVNSDLINGSSNVFKGVVEVFTSPNLSDQDAWYLIDNTKPIKPLILQINKGAEFVAKDNPTDEAAFMRKTFQYGIDSEDNAGYGLWQLAYKSSGKAE
complement(656782..657822)         PHAGE_Haemop_SuMu: bacteriophage Mu I protein gp32; CJS3_0712; phage(gi418489085)     3e-08               MRDLLLELNTKLTNEKVKISPIGIAKGLDGRVFKIDGEKLINNIQKNGLDIALNLNHQGGEAYGWFDRNSLELREDGIYASLELTPKGKELVENKAFRYLSPEYYVDDDKNVIHLDAMGLVNQPNLLNRALNKARSLINSTKNSKLSTPRSGTEAKKGKVEHGLQVGAGSETPTRKDDFSSSAKLKKERNTMNEEELEELQKLAEQVEEQAENVEESVQETEDCVGEGENPDSELETLRQENEELKAQIAELKAKLETALNKNEETEIELNKKRLDSLLQNGLILPNRYQKALNMKGRVLEDYLDVCKKEANIVLGKKELNFTNKRKELNAYEAKVFKQLGIKGGK
657953..658417                     helix-turn-helix domain of resolvase protein; CJS3_0713                              N/A                 MSKKELAKSLFIQGKSIKDICVLTGLSRQGIYCMKKDDFSKGIDWESLKLAALRDEKDLENKEAMFLNALIGEFERFLESASKNELDIDTLEALNKYAKTYWTIKAPQKVDVKALNLQTCKKTIDSIIELASTNEAVCEWLSDNSDLIISKVLK
658414..659046                     PHAGE_Mannhe_phiMHaA1: baseplate assembly protein V; CJS3_0714; phage(gi109289954)     1e-13               MNELGIICDIKDNKAKVAIGDMVTDFLSVFQSLANSYAVSFSPLRIGEQVLVIPVRGDLNSGVILRGLYQEKHRAKNTDENTFNIDFEDGTHLEYNSKSSTLKLDVVKNINITCVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTSGEGGASGTFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR
659055..659246                     hypothetical protein; CJS3_0715                                                      N/A                 MKELFLLLFSLVFFMLFCMGAFYAFLNLNFFIKSIFIGFFIAFMFLGFSQILENIFEFYKGLK
659243..659533                     PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; CJS3_0716; phage(gi428782737)     2e-11               MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDFKIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK
659530..660696                     PROPHAGE_Xylell_Temecula1: phage-related baseplate assembly protein; CJS3_0717; phage(gi28198989)     7e-13               MSELLSANDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKSFLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYLIQRLKGVKPAAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQGILELDEFIQSKESKTEFLQTPLPFVAKIKQLEYFSGGASEESDEALRERAVMSVHRFSTAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRPLTDEVSVELAKKREFIVDAKLLLLELSRANEISEKINALQKDFDLSVDLALGFIYKCLHQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL
660693..661313                     PHAGE_Salmon_RE_2010: tail protein I; CJS3_0718; phage(gi418489712)                  3e-08               MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLLPILANAYDVSIDGLNEKEARKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNYGGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIKSKNDSFNANAQISGETIEILPFQTTFLENEIKSTKNVFGIFMCEITRTNIDFKGVY
661313..662392                     PHAGE_Clostr_phiMMP04: tail fiber; CJS3_0719; phage(gi414090463)                     8e-27               MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSEEMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSDVGGFEVNAVGVYDEAGDLLAVGNVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKVELNLKIDALTQKYDAEFKKVWDEFAKYLLENKFNTEIAKYVTLATNQTITGAKDFTKLPTSSIKATNDNQFVNLATLKENQLNLKDPELLALIGFNTYLDGTSLLKSHSMSNNVIYTNTTGGKTPIAIKIQQIDNVVNQASISIYINNSLIKKINAIQYTNSTGKYIPLTHYEGILKPNDTYKIELFNIIIDKSNIEATILNVR
662402..662908                     PHAGE_Edward_MSW_3: putative tail assembly chaperone; CJS3_0720; phage(gi448261067)     3e-06               MKYFIDKNNNNQIYAYEDEVSDEQIKTGLTPISEEEFNALTSPPKSEEEFLNEAKELKINEINAKKESVLNGGFSFKGKIYQSSNEDQLRINGAVTNALVNPNLIPYIDWIALDNSTTRFSVDEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELDLIVWEGKE
662905..663276                     PHAGE_Campyl_CPX: hypothetical protein; CJS3_0721; phage(gi371670957)                2e-08               MTKAELKRVCVKPYDKDRFEVIQDYEFALLSFKGIVPQGFKTDGASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSRLKIFVFYHSCNLYHAIKCLIKGK
663401..664414                     PHAGE_Campyl_CP21: putative tail fiber protein; CJS3_0722; phage(gi422935209)        5e-29               MKDYGISFIPDINQGSKEPSEPIVSDKLNAQKVNELIDKKLKLFKEELVNKEELKSLIQEILKDEGFQNTNIKISKTPPNYNTQAKVGEIWAVLESKKQLFICTANDNDFTSWVDLLGDGSNDIIPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFATPNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPIAGENQILGTIKTSGIYQETYHKIAHVFKKYNGGADECCLWSSSGSREVSIELENTPMPNKLFARGNGYYGQTEITNVRVKKSIFIGEQEIQSEDFNVEKLEASSDTYGDYAFLFEISKQDQIVMKKELNLNPKKTKNTKNVKK
664425..665615                     PROPHAGE_Xylell_Temecula1: contractile tail sheath protein; CJS3_0723; phage(gi28198986)     2e-20               MAANYGVNFNISNGAASPIKVQSDTPIGIAGAIKGASKEMIYTKAGYESADSFPIFAFSNVSKAKEFVNDLIKENNLQDFRLLDTLECINLQNVSNVIIISFFEESEESENTLTNIVNAIEAFKKAKHKTGFNPDLIIAPYYSHEAGVKAKLESVASSMNITAIVDLYATNVGEAINTMEAFSSKRLIATWPWVQILNTQGKYAYVPQSPIIAGLIAHTDGDKEYGFSDSYSNRVMNGVTGTEYFIEFINGFDCDAERLRNAHISTCILSEGYRSWGGETSHEDTIWQDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKGAKVLIGYEVSWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDEWASDLIKTISAE
665738..666253                     PHAGE_Vibrio_vB_VpaM_MAR: tail tube protein; CJS3_0724; phage(gi428782747)           3e-09               MFNKVPQVIEQANCFIDGYGYAGVARDITLPIIEQEVLESKGALSANYGTGVFKAMECSFKISEMGEQAFEAFGANTFSKTKIPLVFKASIHQSGSGKQVPFVVELNGEFTSMTPPSIVAGGEFTSEIKINVHFIKITMDGKRLFLADIKNLILEFNGIDKMAKVKANLSL
666264..666500                     hypothetical protein; CJS3_0725                                                      N/A                 MSKIIKLSNGNEVKFNPPTAGMLRRSMDMQKGEGSRAFYIIGECTNMSLEELDNLSLEDITLLSNELNNYQTPSGSTE
666484..666621                     hypothetical protein; CJS3_0726                                                      N/A                 MGALNNEAIALIAHYLHFSYSEIMSLNIKDYLEFLDISLKIAKSV
complement(666608..666838)         hypothetical protein; CJS3_0727                                                      N/A                 MKKIDNAFNAKIIFLKNFKIVFKAFLTLGIFVAFMLSFLSDDYLAGFVNITSFFVLFSLMLYIVTFIYCFFKLKHS
666868..668832                     PHAGE_Vibrio_VP882: phage-related tail protein; CJS3_0728; phage(gi126010872)        9e-33               MQDLGLSFGISLAFKGFKEFAKNTEALKKFSANLDQSNKSVKALNKSIDALEKSKAKIKAIGEEFSALKGELMAKGASALAIGVPVKISANLEDDMNNINAFLNTNNESLNLLRKNFLKLSSNIGMNVNELTKLGEAGARLGIKSESELLKFSELGAKYSKVFKLNNEESINFMSKLSNIYKLNTKDMQNLGDKIIGVAKASNVSASSVAKIMNEVGGDAKLIGMSAEGAAALSAAFASATKDEGEAIGTFKAMTSVMSNLNNASDDMKTKFLSLGLSTEQLSAYFKQDASGAVKVLLNQIKTLPKDEMTDFLNSVFGTGAAGMMQNLVDNTDKYEQALKSLKNTKMGALNNEFKKLGDSTNTSFAKLSASMANLSASIGEALAPALSFVMDSISSLINFIREIIDAFPNLSKVIGTLVVSLTIASVALSALKVGFLVAKIAGAQFAFTLNAIRTAFNILKIAFLTNPIGLVLMSIAAIATLVIMNWDKVKTFFIGFIDKISFVFSGFGEFFSSLWGGLFNWFASKFEWLSKAFAKIKDIAKSVASFFGFSDNDKKVDGEKYQNLQNDNSRTHHGIVRSGAPKHEARQAEIAALSKRSDISKKNEINVNINGTFNISSNNGVFDLKAFAKEVENSVLSALNKNADKKVQTTIWG
668834..669208                     PROPHAGE_Xylell_Temecula1: phage-related tail protein; CJS3_0729; phage(gi28198982)     5e-06               MIFCLGEFEFEALNVDELEKNYEYGIRSIERINNHNALISVAKANESIKISGKTLPLSKDKNTYLDTLKQMASQNKSYAMCSASGVYFGKFAILSISEKQSAFLEGSGFLTQNFELNLQRDFDE
669201..669392                     tail protein X, putative; CJS3_0730                                                  N/A                 MSEIYIAKNNERLDSVVYRHYGTLLYFDQVLLANPKLEPLLKTGDKVILPNIEIQENKEETLW
669386..670354                     PHAGE_Entero_2: P2 gpD-like tail protein; CJS3_0731; phage(gi169936019)              8e-15               MVNHPSFKIKANDKDITQKISLNLINLSFDDKAKDESDEISISLNGLYARAPFGDKLELWLGFDEKLFKCGTFSINSFSKNYSSKTTDIKATAINFASNIKNKKSRTWENTNLADIALKIAGENNLKAKTNNANKAYIKHELQNNVSDIEFIYTLCAKYGFLACIKEQTLIIIEQKEAAQEGVKGGGKQEGGIKYTLDISEFSDLNISIKNRNDYTGVKLTYQDIEQGIVKSVLSGNDKGCVYELKVAGVKNDSEALNLANAKLNALNKGSFEGSFSMIGKNIKAGANLEIKGIDEKVIFSIKDVKHDFSLSGYTISVNFEG
670456..671271                     PHAGE_Clostr_phiSM101: putative modification methylase dpniia; CJS3_0732; phage(gi110804053)     7e-48               MKNNTDKFLKTSTLTKPTRTTLKAPFAWVGGKNYLAKEIIALMPEHKSYIEVFGGALSVFYQKSASKIEVINDINDELINLHLCIRNKPQSLTSILHSMLVSRKIFHMLKNKEIKPRNNIERAAFYFYLISTSFGSSMGQFAMSKQRAPKRLCRDFSLYTKRLKNASIENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLLKNIKGKFMLSYNDCELIRELYKDFNIKELKVRYSLNNNVLKRKESKELLIMNF
complement(671299..671586)         hypothetical protein; CJS3_0733                                                      N/A                 MSKVIADIKKGFRKTFINAICNHNNELVLEYLKNGMSATKECMGEEPMFYAITHNNFGAILLLLKYGAILDKEYLEESNKDFSKEALKFLSSLLK
complement(671666..671860)         PHAGE_Lister_vB_LmoM_AG20: hypothetical protein; CJS3_0734; phage(gi472437265)       1e-12               MKYPNVYVKLVGEDGNAFSILARVSNALKKAGVSKEEISQFQKEAMSSDYNHLLNVVQDWVNTN
complement(671870..672190)         hypothetical protein; CJS3_0735                                                      N/A                 MKDIKNYTDKELKEKIMQDLEDEFRILYKKLLKEKDYLARDNILELMTIYNMGINSYSIAKNLEMNEDKSLIQVPLFERYIIGRKFVVKYNNEKQRYELKSTFCEF
complement(672271..672900)         PHAGE_Staphy_phiPV83: repressor; CJS3_0736; phage(gi9635682)                         6e-09               MQMQEVIEKLKDILASEGKRDLKTKDIAKELGIHPDTFNSMKFRNSIPYPQILNFLNERNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDLIDCSELIMDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKTFKNKSICVINTRDGLFIKQVLKQDDGVILHSLNPLYKDIFYKSGDFLLIGVVIGELSKM
686922..686934                     attR                                                                                 N/A                 TCGTCAAATTAAA

#### region 2 ####
1239334..1239346                   attL                                                                                 N/A                 TTTTATCTTTTAA
1239644..1240819                   PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; CJS3_1327; phage(gi16130540)     4e-32               MAKINKLTDSFLKSIKCESDKKFIKFADPSLKGLYVFIYPSGKKLFKIRQANDTYIKIGEYPLLSLAELREIALNAFKLKAKGQNIKNAKRLKFGDIYDEVLEKCKADGLSLKEIQRGLKYKNGVFKNFKDVDIESIKRSHVIETLKTIEHQIPTLIKAKGWINKIFKYALQLEIVENNPVTSIDNSIVFKKASKVIHQPTLLENDKIKEYILALKNSDLKKTHKNLMLFNLLTAQRPGNVIKATWDEIDLKNAIWTIKAEKMKMRKEHIITLNSQALKILKEQKKMKVNDYIFAGSSKNGCNSENITCNINKRLGYKGIQSAHGFRAMFRSLANEHQLDHGVSMDIAEQCLAHEQKNAILKAYNRSENIELKRKLMQWWGDYIEKLAGDF
complement(1240816..1241022)       DNA binding protein, putative; CJS3_1328                                             N/A                 MAKFGKIEKLLSTKEVAEYLGFTPLKIRKMRMRVNQNKFNFPKGIKIGSTFKYEKAEIDKWLQTCKVI
complement(1241024..1241377)       hypothetical protein; CJS3_1329                                                      N/A                 MKEFKEYIKAKIALEKELENTQEMLKQTIKEMLLLRNDNAFNQNANDEMLKAINKNWKITASLESLSDTLEIKVLEQSTSYNRFCFGDVLILISNFLSYEEQKAIIAKLGFDLEKGV
complement(1241395..1242150)       PHAGE_Lactoc_Tuc2009: putative methylase; CJS3_1330; phage(gi13487817)               4e-98               MFHPQLYNDHFQNFKRYNIPKAQLVIADIPYNLGNNAYASSPEWYINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSKMLIKEPKECGKSPCMIVFCSFEQQTMLIEVAKKYGFNHYINLVFRKQSSSQVLKANMKIVGNCEYALILYREKLPKFNNDGKMIYNCMDWQKDEGIPKVHPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAATNLNRKAYGFEIKKDFFKSANEIMFKHIERSLFA
complement(1242128..1242394)       emm-like protein; CJS3_1331                                                          N/A                 MKKNTNQQLEQLKELNQGELNQEIEVLTKRALAIHRSIQRVKDERSILNQNIKDYQSEFNEIMEKIAFLKEPNLFNQKGSDDVSPTAL
complement(1242378..1242749)       hypothetical protein; CJS3_1332                                                      N/A                 MNITRELEAYDLAKLVLNNDLKYFFKDAKIVGENKERRLCFYFSDSFVLALFEKEKENILQRLREEYKKKLEFYKRIDLVFYSIAAKGINELKARSKEEQEVLERGLLKLENIIKRIKNEKKY
complement(1242750..1242974)       hypothetical protein; CJS3_1333                                                      N/A                 MKVNFIFKGTIKCSKCNLEFVPNSKFFKGLDEIIGDVKSVSLDGFCPECDNKLKTSFKVEKITREFNKTYTMRC
complement(1242983..1243651)       hypothetical protein; CJS3_1334                                                      N/A                 MRYINIKPRNKSLSNTIIILDNSKACFELSKKNKKAKDYYIEVQFNGLYQPSKQIEAEVWKILSKMIKRFKAYSVDIACDFDDDLAVSKPREFKHQERFSKLKIFGDFHTYKTSMYINNPQSKYYKLERILLYDKYEKQKYYHKENIKREFVRWKRLELTLKIKDKFLDRIENDINDALDLMQDYLRMIGIWHFNMRMILEQTKYLNNPRWAKIFKPYALAS
complement(1243681..1243995)       hypothetical protein; CJS3_1335                                                      N/A                 MSFKPIQKDNDAFKKAQRAKVIESLAMRGYALVKISSNGFLMKKGFEKDILCKQIIAQDTTASVSLSTKKPFTNTLKDGGFLKKCEAQQEIKALMNLQKTNSKA
complement(1244074..1244394)       hypothetical protein; CJS3_1336                                                      N/A                 MSNKPYLENEIKALKYQLLIEKQKHKKTKEKVFKLKNIQGEKYEKLKAEFAKNQLFVFRDDELFLWVESLMRELKTKILCTNDELSKKACDILVFKLEKRRKNFNY
complement(1244781..1245017)       hypothetical protein; CJS3_1337                                                      N/A                 MTSEELKQFCKEQGLTYKELAELIGFGEGAVKNAISTEKISFQMAHAINMLKKIFELEAKLEKAEAIKKDFKAWINEN
complement(1245031..1245798)       RloG protein, putative; CJS3_1338                                                    N/A                 MTEEKENIVNFKIKIIHEENIELGIMANSLLSFQKLMDSFISKEHGITQSKIFLEKVETGSDIYSLVFEIAGEVLPIIAPIQALNEFIELIISFKNIKSKSIEEIEENPHFTKYNANNLKNIFAPVTINQNTFFINHKGEELLRINSDEAELIYENANYICEKKEIEYQKIHENALITMYKTTNKIDNKTKHKAKCDALSPYAVDVSFSDEKIAEEVLKNPYGFNFLVDLEYYKNDKNKIILYRIFNIKDKISLE
complement(1245815..1245931)       hypothetical protein; CJS3_1339                                                      N/A                 MQSNKTLGEKLKDSIDLADKEAIKQSVGFVFSLANKIF
complement(1245936..1246166)       hypothetical protein; CJS3_1340                                                      N/A                 MEQEIAKIKKFKLECKNCETQIIIDTHNSIKNCPVCGLKFYDNLESPFENLHEQILLINKNKNVKVYFVCEEKEKR
complement(1246132..1246395)       hypothetical protein; CJS3_1341                                                      N/A                 MDKNLKKITELKIKCKNCDTKIITKIGNVIKTCPQCGIKFIDENLGYNLFEILTELFKSVSKNKNAEFYFVCKKECDGTRNRQDKKV
complement(1246452..1246739)       PHAGE_Campyl_CPX: hypothetical protein; CJS3_1342; phage(gi371670989)                7e-08               MPSDRVEIELFTGFYDKKGNKIYEGDILYSFEGCSEDEAFKYKVVFKEGAFYLVECGDDGEEWDEDLLSEFCLEELEIVGNIHENAELLNENKPS
complement(1246792..1247301)       PHAGE_Clostr_phiCP34O: uncharacterized phage-encoded protein; CJS3_1343; phage(gi422935461)     3e-18               MILVSGYSVELRAKIIDRLEYLENELKKQSYKPLSLKESLQMQLELLERNEKLQIENVNLKNEAKENAPLIHFANRIKDTNDAILIRDFAKILYEKNKIEIGEKRLFKILREKGFLMSDNKPYQKYIEQGLFKVSETTVSTINGDRLVSTTKITGKGQIAILKEILKAS
complement(1247298..1247522)       PHAGE_Entero_vB_EcoS_Rogue1: hypothetical protein; CJS3_1344; phage(gi428782487)     7e-05               MNLELFKKDENKEISLTSLEIAELTGKEHFNVIRDIETYLEKVVEGVSSNLKTPTKTHKISNLTSVTAYQKEKY
complement(1247953..1248237)       hypothetical protein; CJS3_1345                                                      N/A                 MKQAIKQKLGVSSITEAGLKLNLAHNVLNSWLSNNLTNAKVEIALLKLGLREDERLIKRIEKLKSEYKKNEIRKQAYEKSMKEIKALLEEIEAA
complement(1248234..1248437)       hypothetical protein; CJS3_1346                                                      N/A                 MQEAKSILDVLSFRKTEEKEELRKCFNFSDEVFEKGLNFLHTNDEISIEAVSDGLFEKTIISIKVSK
1248651..1249034                   hypothetical protein; CJS3_1347                                                      N/A                 MNYEEIIKILKKIANVDTIKELSDVLNINYATFNTWATRGEIPFKRIKEFSEKLGVNIDTIINGNINTKGNENVIVQGKNNVVNFQKNSKYNDKFQEFLALYEKYGNEALLDQFINKLENLKKIIEE
1249038..1249355                   hypothetical protein; CJS3_1348                                                      N/A                 MEIINTLIKFFNSFGVFVLLGIAIIVLWILSIREKNRKEREVYEAIRREEVSRISDGVASGIVRIFNDKSFIQALNNGVSIEVKINVDGSQNIIINGNGNQIQRV
1249357..1250337                   PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp05; CJS3_1349; phage(gi209363557)     5e-22               MENYDIDIYGNPIKVKKPSREFKGQSLIYFPKSYVVIDLETTGFDPKCNEILEIVALRYENNEKIAEFSKLIKVSFLPSFITEFTGINEDMIKNCNDISQTLKEFDDFLKSGDILVAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRLSKLINQELAHHRLKDLCNQYNICYENAHRGEKDCELTHLCLMELKKTAFDNSLIENDVLVNNGLKTQIRQTQTKAKDIQAKIQEFDISHPLYNQNCVITGILGRFTRSQAMQIIADLGGINQDSVTKKTNILILGDNDYRAMIKGGISNKLKRARELILKGQDLKIISENVFYDMIF
1250347..1250967                   PHAGE_Cafete_BV_PW1: putative glycosyltransferase; CJS3_1350; phage(gi310831262)     3e-06               MQLSLFDENNLKDLGIQSIKAYEEKNEKKLKDLIFKINCVLNLDSQKDLVLQIRSIYIEIYKNFLKDEEIKNLTLGFVIKLSLIYDKSVLEELKKINISNNFLQDVLKMDLQNFSKEIKLFVKENLKNQISEKHIEIKQLKIFDLYKKIATYIYIKKFKRYGLLSYIQKNTQDDKLKNQTYDLMNAFRFYLNDFFENFDMSRGLKE
1250969..1252747                   conserved hypothetical protein; CJS3_1351                                            N/A                 MYITIDKIAEFLTSKSRVCLTINGHWGIGKTHLWKQVEEKINADKKVVYIDLFGKESYKQILEEIVFKIHQNYNKTVNVTSRIISKTINIKSAGIININPDAIFSFLKKEDFNNIIVCFDNIERRSDNLSLKEILGLVNLLKEDKECSVVLILNKNELNKQEDNAKNNMQTSSNDKTQHDAKQNNNDWYQEYKEKVIDYKVCLKDNDEIAKALIEEAFMQDEKLIRDNGLKSNLVDIVLKHYQDICDSNLRLLLKILEHIKYFNERCFQSHYDKTIKEEFIIVIHEHYLAIFNAVKDFYIQRKEKRNLSNMYIYDIVTRYLNNFFIINDNDEKKLNDIIIRQLSSKLLLTFEKTYTTYFDEGGSDADFKNKIENILQIRDNKLEVFAKDLNSEKFLKTIYWFKQIIKSDQEVSEEYKKGYFEKIDKIIQILIKEQYPYYSKRIKLLIAFSKQCKKIYSEITKKHNNEDKLKIFKYNIKEYPHIFHFVNIDKFNQYEIKSIKDAFYNDKYFLKNFIDFFRLVPKKNPIPKGDHNLNRYTDTDSKEYEKIFKKNNLFLAFIEYINENKYKKQIFIKDRRVNNDKSNILSKLFYL
complement(1252917..1253336)       hypothetical protein; CJS3_1352                                                      N/A                 MINLLFGNAKLYIALALMAILTGYFYLRLDSTKAKLEKSQSDLALALKINENNQEKLKELNQIHKTELKALNEANNQKNQVQERVQYVKEYIYKSNENNITKLFNDVVDRLWDANSTSSNQNRNSKSKNSARTTNIKSS
complement(1253398..1253856)       PHAGE_Campyl_CPX: hypothetical protein; CJS3_1353; phage(gi371670943)                6e-10               MKVTINRRYTGKTCVIGKFKVLDDEEKILFECFSLEEDKEGLESGKDLRIPEGNYNLKRHSPSRFENTLRSITKKDDTMINVYNDEVPSSRAILIHWGNTDKDTQGCILLGLTKDNNNESVGQSRQACKEFYDLVYGKNLEDIKLEITNELA
complement(1253905..1255188)       PHAGE_Campyl_CPX: hypothetical protein; CJS3_1354; phage(gi371671054)                2e-35               MSVDLREIAIKTEEINKDFSEALEILKELFKNGVKPSDESIKNAINEVLTSFNFIKQSELKEKLEALLEELGINANINEESLKEVVLKVVLENQESLKGDKGDPFTYEDFTEEQLENLKGQDGAKGADGKSAYELWLENEENTGKSQDEFLESLKAQTPTKEEIKPIIEEMLEDMKLNLGINGIKVSNSIPTPKTKANVNDLIITYNENVKQLWLCVASDDKYTSWINLLGNENITAQELIIISFDTNLNSGQYGGCLSDLRFGFENSLASTTQIIKGLNEGSFLITKDGMGLKSKNYTEVSVLSKPSKNQIEGNIKTSGIYNDPAWHNITNALKKYDGNANECCLWASNIKNSVSIELFTNEIPMSLFYRQAGYYGNVNLSNIKMQKALRVQNEIIVERSFIGIKKEIDKTTYGDNAFLFEFEEEK
complement(1255185..1255556)       PHAGE_Campyl_CPX: hypothetical protein; CJS3_1355; phage(gi371670957)                5e-08               MKNELKRVCVKPYDKDRFEVIQDYEFILPNYKGIVPQGFKTDGASIPRLFWSLFPPFKSEYFSACVVHDFLCEKAKSRKDYKLADLVLKEAMQALEINKFKIFVFYCSCNLFHQIKCLIKGIR
complement(1255546..1256010)       hypothetical protein; CJS3_1356                                                      N/A                 MNNLENNTNVILFAGSAILAFFYQFLAYFKIETAQVIVLLIVFSFSGIASMIKTLALRKNFRNFLITDILSKTLMFFVPFILAIMAKQISVFYYLVDYSFSFLTIGEFLAFLISVQSIRKKEDIKEMDFYNLFIEKFKNIANKYLKLEGDKNEK
complement(1256007..1256642)       PHAGE_Campyl_CPX: hypothetical protein; CJS3_1357; phage(gi371670964)                2e-13               MFYDLKNKSLKYDDIFLKDVKIQNEEGEIDAQDTYFLSACDDKLLKELGFAKVKEEEIPSFNEKIEELRQIQTYDEENNLYIISYEIKEKALEELKELKLEELKAIKEEKLLFMPFKNTIFQIDTEAKINISGKVSEIMLANLNNTPLENIAWIDKDNKIITFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATSLEELNLIAWESEK
complement(1256655..1257104)       hypothetical protein; CJS3_1358                                                      N/A                 MNCLLLSNNGIALNLPPSLGGSVANYNYMLKLDMIYKQAVILPSNINNKEVVMLGEVWTTGNMSNKTSANTLHITWNNFNSSVELHALSKYYTANAKIKVEKKFNFGNINNLQIMLSSYQSGSAKASAGWNLNDGNRLNPRANLTLYWN
complement(1257106..1258671)       PHAGE_Human__8: LANA; CJS3_1359; phage(gi139472804)                                  4e-05               MLDNSKIRSTELYATLSQATKDVTAIREWLYASKDRIDEHILENLNAFDEKVKEALQNYENLSDEKLNMLKELYKKVVYPFDYVSDEEPTMANVNETWFKTDEAKIFKFIKNPQITFLQKERPKERKINDIWFKPMDDVNLQVGEFYLCEKVLKNEAWINPSLPENLEPAFNQEEAPQNATLGDIWKKGDEYFVYIKTTSGNSWTSPENPSEYTPTYESEEEPSEAKLGEIWKKGNEYLIYARVTNDTAWILKSDLGLDAFIWFNEEKENINFILSLIGDLKKEDEKEETSKNEIKDLEQNLSNKQEELENIKKQIEEALAKDPPQNVDNLNEKKTQLEQEITKMQEDLNHKQNELEQIQKDKSLVSQKMLSDALKEKVGLKGDETLNGNKTLNGDNIFNGTNTFNQALTSRADPTNDNHLTRKWYVDYGGGIKNLGTTGSINLDLRQAQHFILTANAGTSIGIANFGGVGKSGTITINNCQNVVAFNAPFKFRIAQSGFSGTETFAYFCIASNNVRLVRT
complement(1258664..1259296)       hypothetical protein; CJS3_1360                                                      N/A                 MNKISFINTLPKAPDMANPVDFDKDANNFVNALVPFSKEINDFIKDINILSASLIELNSNMISYTNLALEQIDSKTNINILKIENFCKDFQNVLEQKAKERLKEFTDECLTIVENKGYEMIERLNDNGVGADYIAISQSLTHSLSLERFIMERGFIKLRKEEALNLDDVNLSLEEQRRDINLAQKALENITNILSSQNEINLTLKGENNA
complement(1259293..1259610)       phage head-tail adaptor, putative; CJS3_1361                                         N/A                 MKANGFKHRVKIYKKEQSKNEFLESDFTQDLLFKEVYASCKNLSADVKELNSGLSLVATHEFELRFLELDFSYFLVFRDEKYEIVSLEDESQNKKFLKIKARKFQ
complement(1259623..1260060)       hypothetical protein; CJS3_1362                                                      N/A                 MRLKALKDSKKELIDIQELRDFLRIDSDVFDANLKQFLKAGMNEFETRTNRILALNDYEVEFFNERVILAPFNALKNANFKAEFKTNGGVLYAIGCGNMIVNLGFEELPQDIKLWLKNYVLMAFDGVSMPKISSALITRYKIAYF
complement(1260057..1260308)       hypothetical protein; CJS3_1363                                                      N/A                 MKKVVFKCCLSGNIFYKKGDEVLLEDSEALRLLEKGIVEIVEQEEQKQNTDEKSNTDKKPQEDQEMQEKPQKQNEKEDKKGKK
complement(1260319..1261485)       PHAGE_Entero_SfV: capsid; CJS3_1364; phage(gi19548995)                               7e-30               MQKLRQEIGNLHEQMVALSNKAKNEQRSFSAEENTKYEALMQDFESKRKELSRAEAELEREKYLNEVVSPVLGQNPKGEDEDLNEENHMRSFVNYLRNGSIDNILKRNVLNESTAEQGGILVPTTLQSKIREKLNDLSVIRKIATVQKSSSNQIIPVFDEMGEFSWLGEQESFTEVSAKFSSLSIGAHKLGGIIKISEELLSDNIANLESFIVRKAAEKISKTEELSFINGDGNKKPTGLKNAKKAFTLASNQGITSNDIIDAFFSLDSAYRKNATWLVGDEFMKAIYKLTDNDNRPLWLPALSANGYDTILGKKVVYCSGVDGFGASKVPAFFGDFSFYEIWDRSSMSFTRLNELYSQNDLIGIKVRLRLDAKLMDNSAVCKIVCPA
1275328..1275340                   attR                                                                                 N/A                 TTTTATCTTTTAA
