gi|00000000|ref|CP002110.1|  Staphylococcus aureus subsp. aureus TCH60, complete genome. 2802675, gc%: 32.87%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
518484..518496                     attL                                                                                 N/A                 ATATAGAAATGTA
525491..526330                     PHAGE_Gordon_Nyceirae_NC_031004: hypothetical protein; HMPREF0772_10473; phage(gi100046)     8.56e-12            [Staphylococcusaureussubsp.aureusTCH60]
526499..526783                     hypothetical protein; HMPREF0772_10474                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
526883..527236                     hypothetical protein; HMPREF0772_10475                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
527304..527699                     hypothetical protein; HMPREF0772_10476                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
527952..528521                     PHAGE_Bacill_250_NC_029024: helix-turn-helix domain protein; HMPREF0772_10477; phage(gi971766654)     7.19e-09            [Staphylococcusaureussubsp.aureusTCH60]
complement(528648..528848)         PHAGE_Lactoc_bIL312_NC_002671: Csp; HMPREF0772_10478; phage(gi13095918)              2.84e-26            [Staphylococcusaureussubsp.aureusTCH60]
529332..530135                     PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; HMPREF0772_10479; phage(gi100269)     5.14e-23            [Staphylococcusaureussubsp.aureusTCH60]
530154..530903                     hypothetical protein; HMPREF0772_10480                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
530893..531402                     putative phage tail component domain protein; HMPREF0772_10481                       N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(531470..531871)         PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0772_10482; phage(gi588498272)     2.23e-20            [Staphylococcusaureussubsp.aureusTCH60]
complement(532163..532282)         hypothetical protein; HMPREF0772_10483                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(532489..532680)         hypothetical protein; HMPREF0772_10484                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(532772..534652)         efflux ABC transporter, permease protein; HMPREF0772_10485                           N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(534642..535400)         PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; HMPREF0772_10486; phage(gi371496158)     1.49e-45            [Staphylococcusaureussubsp.aureusTCH60]
540654..540666                     attR                                                                                 N/A                 ATATAGAAATGTA

#### region 2 ####
1251823..1252824                   PHAGE_Staphy_phi7401PVL_NC_020199: Panton-Valentine leukocidin chain S precursor; HMPREF0772_11177; phage(gi448244684)     1.70e-44            [Staphylococcusaureussubsp.aureusTCH60]
1252846..1253865                   PHAGE_Staphy_phiPV83_NC_002486: LukF-PV(P83) precursor; HMPREF0772_11178; phage(gi9635737)     1.72e-66            [Staphylococcusaureussubsp.aureusTCH60]
complement(1254122..1254964)       sphingomyelin phosphodiesterase; HMPREF0772_11179                                    N/A                 [Staphylococcusaureussubsp.aureusTCH60]
1255053..1255457                   PHAGE_Staphy_phiNM3_NC_008617: hypothetical protein; HMPREF0772_11180; phage(gi118725099)     1.48e-91            [Staphylococcusaureussubsp.aureusTCH60]
1255454..1255861                   PHAGE_Staphy_phiNM3_NC_008617: hypothetical protein; HMPREF0772_11181; phage(gi118725100)     2.45e-93            [Staphylococcusaureussubsp.aureusTCH60]
1255862..1256506                   PHAGE_Staphy_phi5967PVL_NC_019921: phi13 family phage major tail protein; HMPREF0772_11182; phage(gi431810276)     1.98e-153           [Staphylococcusaureussubsp.aureusTCH60]
1256632..1256772                   PHAGE_Staphy_phiNM3_NC_008617: hypothetical protein; HMPREF0772_11183; phage(gi118725102)     1.22e-24            [Staphylococcusaureussubsp.aureusTCH60]
1256822..1257172                   PHAGE_Staphy_phiNM3_NC_008617: hypothetical protein; HMPREF0772_11184; phage(gi118725103)     8.30e-81            [Staphylococcusaureussubsp.aureusTCH60]
1257199..1257360                   PHAGE_Staphy_77_NC_005356: 77ORF100; HMPREF0772_11185; phage(gi41189576)             1.65e-31            [Staphylococcusaureussubsp.aureusTCH60]
1257417..1261946                   PHAGE_Staphy_phiNM3_NC_008617: phage tail tape measure protein; HMPREF0772_11186; phage(gi118725105)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1261943..1263427                   PHAGE_Staphy_phiNM3_NC_008617: hypothetical protein; HMPREF0772_11187; phage(gi118725106)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1263443..1267228                   PHAGE_Staphy_phiNM3_NC_008617: phage minor structural protein; HMPREF0772_11188; phage(gi118725107)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1267218..1267370                   PHAGE_Staphy_phiNM3_NC_008617: hypothetical protein; HMPREF0772_11189; phage(gi118725108)     3.06e-29            [Staphylococcusaureussubsp.aureusTCH60]
1267417..1267704                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 22 homologue; HMPREF0772_11190; phage(gi9635732)     7.54e-63            [Staphylococcusaureussubsp.aureusTCH60]
1267762..1268058                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 17 homologue; HMPREF0772_11191; phage(gi9635733)     7.43e-64            [Staphylococcusaureussubsp.aureusTCH60]
1268250..1268384                   PHAGE_Staphy_phiN315_NC_004740: hypothetical protein; HMPREF0772_11192; phage(gi30043935)     9.93e-22            [Staphylococcusaureussubsp.aureusTCH60]
1268596..1268850                   PHAGE_Staphy_phiNM3_NC_008617: holin; HMPREF0772_11193; phage(gi118725112)           6.06e-57            [Staphylococcusaureussubsp.aureusTCH60]
1268862..1269617                   PHAGE_Staphy_phiNM3_NC_008617: amidase; HMPREF0772_11194; phage(gi118725113)         0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1269807..1270298                   PHAGE_Staphy_phiNM3_NC_008617: staphylokinase precursor; HMPREF0772_11195; phage(gi118725114)     5.18e-114           [Staphylococcusaureussubsp.aureusTCH60]
1270987..1271283                   PHAGE_Staphy_phiNM3_NC_008617: truncated amidase; HMPREF0772_11196; phage(gi118725115)     1.21e-65            [Staphylococcusaureussubsp.aureusTCH60]
complement(1271378..1271827)       PHAGE_Staphy_phiNM3_NC_008617: chemotaxis-inhibiting protein CHIPS; HMPREF0772_11197; phage(gi118725116)     1.03e-103           [Staphylococcusaureussubsp.aureusTCH60]
1272511..1272861                   PHAGE_Staphy_phiNM3_NC_008617: Staphylococcal complement inhibitor; HMPREF0772_11198; phage(gi118725117)     5.67e-77            [Staphylococcusaureussubsp.aureusTCH60]
complement(1272885..1274531)       PHAGE_Staphy_Pvl108_NC_008689: putative transposase; HMPREF0772_11199; phage(gi119443708)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
complement(1274838..1275029)       PHAGE_Staphy_JS01_NC_021773: hypothetical protein; HMPREF0772_11200; phage(gi526003548)     4.11e-36            [Staphylococcusaureussubsp.aureusTCH60]
complement(1275077..1275385)       PHAGE_Staphy_StauST398_1_NC_021326: hypothetical protein; HMPREF0772_11201; phage(gi509140092)     1.85e-63            [Staphylococcusaureussubsp.aureusTCH60]
complement(1275409..1275588)       PHAGE_Staphy_phiN315_NC_004740: hypothetical protein; HMPREF0772_11202; phage(gi30043926)     1.80e-35            [Staphylococcusaureussubsp.aureusTCH60]

#### region 3 ####
1737832..1737843                   attL                                                                                 N/A                 TTGAAATAATTT
1738379..1739266                   PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; HMPREF0772_11644; phage(gi157265299)     1.89e-23            [Staphylococcusaureussubsp.aureusTCH60]
complement(1739344..1739850)       hypothetical protein; HMPREF0772_11645                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
1739918..1740673                   ScpA/B protein; HMPREF0772_11646                                                     N/A                 [Staphylococcusaureussubsp.aureusTCH60]
1740666..1741208                   segregation and condensation protein B; HMPREF0772_11647                             N/A                 [Staphylococcusaureussubsp.aureusTCH60]
1741201..1741938                   pseudouridylate synthase; HMPREF0772_11648                                           N/A                 [Staphylococcusaureussubsp.aureusTCH60]
1742071..1742796                   PHAGE_Roseob_1_NC_015466: transcriptional regulator CtrA; HMPREF0772_11649; phage(gi331028091)     8.22e-06            [Staphylococcusaureussubsp.aureusTCH60]
1742777..1744528                   sensor protein SrrB; HMPREF0772_11650                                                N/A                 [Staphylococcusaureussubsp.aureusTCH60]
1744780..1745712                   hypothetical protein; HMPREF0772_11651                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
1745699..1747741                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11652; phage(gi209363553)     1.06e-64            [Staphylococcusaureussubsp.aureusTCH60]
complement(1747784..1748989)       PHAGE_Staphy_phi2958PVL_NC_011344: phage integrase; HMPREF0772_11653; phage(gi209363554)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1749095..1749110                   attL                                                                                 N/A                 AATAAAAAGCAGGTGA
1749115..1749729                   PHAGE_Staphy_phi7401PVL_NC_020199: Na/K ATPase; HMPREF0772_11654; phage(gi448244644)     1.04e-142           [Staphylococcusaureussubsp.aureusTCH60]
complement(1749726..1749872)       PHAGE_Staphy_47_NC_007054: ORF136; HMPREF0772_11655; phage(gi66395724)               8.98e-21            [Staphylococcusaureussubsp.aureusTCH60]
complement(1750102..1750686)       PHAGE_Staphy_42E_NC_007052: ORF022; HMPREF0772_11656; phage(gi66395530)              6.15e-92            [Staphylococcusaureussubsp.aureusTCH60]
complement(1750704..1751174)       PHAGE_Staphy_3MRA_NC_028917: toxin-antitoxin system; HMPREF0772_11657; phage(gi971755521)     4.26e-108           [Staphylococcusaureussubsp.aureusTCH60]
complement(1751178..1751492)       PHAGE_Staphy_71_NC_007059: ORF022; HMPREF0772_11658; phage(gi66396062)               7.44e-74            [Staphylococcusaureussubsp.aureusTCH60]
1751644..1751880                   PHAGE_Staphy_phiMR11_NC_010147: putative transcriptional regulator protein; HMPREF0772_11659; phage(gi162290112)     9.28e-52            [Staphylococcusaureussubsp.aureusTCH60]
1751894..1752670                   PHAGE_Staphy_phiMR11_NC_010147: putative anti-repressor protein; HMPREF0772_11660; phage(gi162290113)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1752699..1752842                   PHAGE_Staphy_StauST398_2_NC_021323: hypothetical protein; HMPREF0772_11661; phage(gi509139886)     1.72e-24            [Staphylococcusaureussubsp.aureusTCH60]
complement(1752832..1753041)       PHAGE_Staphy_StauST398_2_NC_021323: hypothetical protein; HMPREF0772_11662; phage(gi509139887)     1.11e-42            [Staphylococcusaureussubsp.aureusTCH60]
1753097..1753342                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11663; phage(gi209363562)     7.08e-55            [Staphylococcusaureussubsp.aureusTCH60]
complement(1753311..1753676)       PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11664; phage(gi209363563)     7.29e-83            [Staphylococcusaureussubsp.aureusTCH60]
1753719..1753946                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11665; phage(gi209363564)     4.27e-24            [Staphylococcusaureussubsp.aureusTCH60]
1753971..1754234                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11666; phage(gi209363565)     1.66e-43            [Staphylococcusaureussubsp.aureusTCH60]
1754247..1754408                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11667; phage(gi209363566)     4.25e-29            [Staphylococcusaureussubsp.aureusTCH60]
1754487..1754810                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11668; phage(gi209363567)     4.68e-62            [Staphylococcusaureussubsp.aureusTCH60]
1754825..1755187                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11669; phage(gi209363568)     1.07e-77            [Staphylococcusaureussubsp.aureusTCH60]
1755184..1756350                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11670; phage(gi209363569)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1756376..1756933                   PHAGE_Staphy_phi7401PVL_NC_020199: hypothetical protein; HMPREF0772_11671; phage(gi448244654)     1.25e-132           [Staphylococcusaureussubsp.aureusTCH60]
1756993..1758954                   PHAGE_Staphy_phi7401PVL_NC_020199: phage encoded DNA polymerase I; HMPREF0772_11672; phage(gi448244655)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1758966..1759121                   hypothetical protein; HMPREF0772_11673                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
1759121..1759306                   PHAGE_Staphy_P954_NC_013195: hypothetical protein; HMPREF0772_11674; phage(gi257136383)     3.45e-36            [Staphylococcusaureussubsp.aureusTCH60]
1759307..1759660                   PHAGE_Staphy_96_NC_007057: ORF040; HMPREF0772_11675; phage(gi66395925)               6.79e-78            [Staphylococcusaureussubsp.aureusTCH60]
1759657..1759911                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11676; phage(gi209363574)     3.21e-57            [Staphylococcusaureussubsp.aureusTCH60]
1759911..1760159                   PHAGE_Staphy_3A_NC_007053: ORF049; HMPREF0772_11677; phage(gi66395634)               1.61e-54            [Staphylococcusaureussubsp.aureusTCH60]
1760173..1760421                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11678; phage(gi209363576)     5.52e-50            [Staphylococcusaureussubsp.aureusTCH60]
1760414..1760947                   PHAGE_Staphy_DW2_NC_024391: putative SaPIbov1 derepressor; HMPREF0772_11679; phage(gi658608059)     6.90e-127           [Staphylococcusaureussubsp.aureusTCH60]
1760984..1761136                   PHAGE_Staphy_55_NC_007060: ORF071; HMPREF0772_11680; phage(gi66396173)               9.99e-23            [Staphylococcusaureussubsp.aureusTCH60]
1761129..1761587                   PHAGE_Staphy_71_NC_007059: ORF027; HMPREF0772_11681; phage(gi66396067)               5.79e-86            [Staphylococcusaureussubsp.aureusTCH60]
1761600..1761752                   PHAGE_Staphy_YMC/09/04/R1988_NC_022758: integrase regulator RinB; HMPREF0772_11682; phage(gi557308111)     1.86e-29            [Staphylococcusaureussubsp.aureusTCH60]
1761787..1762020                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11683; phage(gi209363580)     2.80e-40            [Staphylococcusaureussubsp.aureusTCH60]
1762073..1764520                   PHAGE_Staphy_3A_NC_007053: ORF002; HMPREF0772_11684; phage(gi66395590)               0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1764861..1765151                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11685; phage(gi209363582)     5.94e-66            [Staphylococcusaureussubsp.aureusTCH60]
1765132..1766499                   PHAGE_Staphy_3A_NC_007053: ORF009; HMPREF0772_11686; phage(gi66395597)               0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1766512..1766949                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11687; phage(gi209363584)     1.70e-99            [Staphylococcusaureussubsp.aureusTCH60]
1767106..1767420                   PHAGE_Staphy_StauST398_2_NC_021323: hypothetical protein; HMPREF0772_11688; phage(gi509139912)     3.50e-70            [Staphylococcusaureussubsp.aureusTCH60]
1767530..1767853                   PHAGE_Staphy_phi2958PVL_NC_011344: terminase small subunit; HMPREF0772_11689; phage(gi209363586)     9.96e-73            [Staphylococcusaureussubsp.aureusTCH60]
1767843..1769534                   PHAGE_Staphy_vB_SauS_phi2_NC_028862: hypothetical protein; HMPREF0772_11690; phage(gi971750134)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1769539..1770777                   PHAGE_Staphy_phi7401PVL_NC_020199: portal protein; HMPREF0772_11691; phage(gi448244665)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1770761..1771534                   PHAGE_Staphy_phi2958PVL_NC_011344: prohead protease; HMPREF0772_11692; phage(gi209363589)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1771501..1772709                   PHAGE_Staphy_phi2958PVL_NC_011344: putative capsid protein; HMPREF0772_11693; phage(gi209363590)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1772778..1773056                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11694; phage(gi209363591)     3.52e-61            [Staphylococcusaureussubsp.aureusTCH60]
1773068..1773400                   PHAGE_Staphy_YMC/09/04/R1988_NC_022758: hypothetical protein; HMPREF0772_11695; phage(gi557308062)     1.68e-76            [Staphylococcusaureussubsp.aureusTCH60]
1773397..1773798                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11696; phage(gi209363593)     2.10e-93            [Staphylococcusaureussubsp.aureusTCH60]
1773799..1774194                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11697; phage(gi209363594)     1.69e-90            [Staphylococcusaureussubsp.aureusTCH60]
1774229..1774870                   PHAGE_Staphy_phi2958PVL_NC_011344: major tail protein 1; HMPREF0772_11698; phage(gi209363595)     2.88e-155           [Staphylococcusaureussubsp.aureusTCH60]
1774962..1775417                   PHAGE_Staphy_phi7401PVL_NC_020199: major tail protein2; HMPREF0772_11699; phage(gi448244672)     2.22e-104           [Staphylococcusaureussubsp.aureusTCH60]
1775475..1775816                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11700; phage(gi209363597)     1.51e-75            [Staphylococcusaureussubsp.aureusTCH60]
1775867..1776025                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11701; phage(gi209363598)     4.52e-30            [Staphylococcusaureussubsp.aureusTCH60]
1776015..1782239                   PHAGE_Staphy_SMSAP5_NC_019513: phage tail tape measure protein; HMPREF0772_11702; phage(gi422935797)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1782239..1783063                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11703; phage(gi209363600)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1783072..1784655                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11704; phage(gi209363601)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1784655..1784945                   PHAGE_Staphy_StauST398_2_NC_021323: hypothetical protein; HMPREF0772_11705; phage(gi509139930)     5.13e-64            [Staphylococcusaureussubsp.aureusTCH60]
1784961..1786871                   PHAGE_Staphy_StauST398_2_NC_021323: minor structural protein; HMPREF0772_11706; phage(gi509139931)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1786871..1788337                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11707; phage(gi209363604)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1788337..1788726                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11708; phage(gi209363605)     2.52e-89            [Staphylococcusaureussubsp.aureusTCH60]
1788719..1788883                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11709; phage(gi209363606)     8.14e-32            [Staphylococcusaureussubsp.aureusTCH60]
1788929..1789228                   PHAGE_Staphy_phi2958PVL_NC_011344: hypothetical protein; HMPREF0772_11710; phage(gi209363607)     1.50e-64            [Staphylococcusaureussubsp.aureusTCH60]
1789319..1789666                   PHAGE_Staphy_phi2958PVL_NC_011344: holin; HMPREF0772_11711; phage(gi209363608)       8.55e-68            [Staphylococcusaureussubsp.aureusTCH60]
1789677..1791131                   PHAGE_Staphy_phi2958PVL_NC_011344: amidase; HMPREF0772_11712; phage(gi209363609)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1791519..1792457                   PHAGE_Staphy_phi2958PVL_NC_011344: Panton-Valentine leukocidin chain S precursor; HMPREF0772_11713; phage(gi209363611)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1792459..1793436                   PHAGE_Staphy_phi2958PVL_NC_011344: Panton-Valentine leukocidin chain F precursor; HMPREF0772_11714; phage(gi209363612)     0.0                 [Staphylococcusaureussubsp.aureusTCH60]
1793685..1793870                   PHAGE_Staphy_Pvl108_NC_008689: hypothetical protein; HMPREF0772_11715; phage(gi119443711)     7.97e-38            [Staphylococcusaureussubsp.aureusTCH60]
1798195..1798210                   attR                                                                                 N/A                 AATAAAAAGCAGGTGA
1801009..1801020                   attR                                                                                 N/A                 TTGAAATAATTT

#### region 4 ####
1996232..1996245                   attL                                                                                 N/A                 GTATAGTATAGAAT
complement(2007724..2007921)       PHAGE_Thermu_OH2_NC_021784: hypothetical protein; HMPREF0772_11894; phage(gi526118332)     8.61e-05            [Staphylococcusaureussubsp.aureusTCH60]
complement(2007928..2008128)       PHAGE_Staphy_StB27_NC_019914: minor head protein; HMPREF0772_11895; phage(gi431809708)     1.92e-13            [Staphylococcusaureussubsp.aureusTCH60]
complement(2008331..2008468)       hypothetical protein; HMPREF0772_11896                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2008465..2008731)       hypothetical protein; HMPREF0772_11897                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2008777..2009055)       PHAGE_Staphy_StB27_NC_019914: scaffold protein; HMPREF0772_11898; phage(gi431809709)     3.17e-10            [Staphylococcusaureussubsp.aureusTCH60]
complement(2009206..2009454)       hypothetical protein; HMPREF0772_11899                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2009765..2009998)       PHAGE_Staphy_StB27_NC_019914: minor head protein; HMPREF0772_11900; phage(gi431809708)     1.10e-14            [Staphylococcusaureussubsp.aureusTCH60]
complement(2010211..2010405)       hypothetical protein; HMPREF0772_11901                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2010416..2010589)       hypothetical protein; HMPREF0772_11902                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2010734..2010931)       PHAGE_Staphy_StB27_NC_019914: minor head protein; HMPREF0772_11903; phage(gi431809708)     6.35e-16            [Staphylococcusaureussubsp.aureusTCH60]
complement(2011258..2011842)       PHAGE_Staphy_StB27_NC_019914: scaffold protein; HMPREF0772_11904; phage(gi431809709)     7.22e-10            [Staphylococcusaureussubsp.aureusTCH60]
complement(2012002..2012199)       hypothetical protein; HMPREF0772_11905                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2012201..2012722)       PHAGE_Staphy_StB27_NC_019914: minor head protein; HMPREF0772_11906; phage(gi431809708)     4.61e-15            [Staphylococcusaureussubsp.aureusTCH60]
complement(2012927..2013178)       hypothetical protein; HMPREF0772_11907                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
2013593..2013796                   hypothetical protein; HMPREF0772_11908                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
2014062..2014268                   PROPHAGE_Escher_CFT073: transposase/IS protein; HMPREF0772_11909; phage(gi26248359)     7.76e-12            [Staphylococcusaureussubsp.aureusTCH60]
complement(2014697..2015113)       PHAGE_Staphy_80_NC_030652: prohead core protein protease; HMPREF0772_11910; phage(gi100061)     3.36e-26            [Staphylococcusaureussubsp.aureusTCH60]
2015540..2016487                   PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0772_11911; phage(gi9635740)      0.0                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2016701..2016901)       PHAGE_Staphy_SA13_NC_021863: hypothetical protein; HMPREF0772_11912; phage(gi526244934)     1.03e-29            [Staphylococcusaureussubsp.aureusTCH60]
complement(2017591..2017725)       hypothetical protein; HMPREF0772_11913                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
2017844..2017857                   attR                                                                                 N/A                 GTATAGTATAGAAT
complement(2018091..2018297)       PHAGE_Staphy_96_NC_007057: ORF059; HMPREF0772_11914; phage(gi66395937)               8.34e-20            [Staphylococcusaureussubsp.aureusTCH60]
complement(2018594..2018806)       PHAGE_Staphy_StauST398_3_NC_021332: hypothetical protein; HMPREF0772_11915; phage(gi509141007)     2.51e-10            [Staphylococcusaureussubsp.aureusTCH60]
complement(2019507..2019704)       PHAGE_Staphy_vB_SauS_phi2_NC_028862: DNA-binding protein; HMPREF0772_11916; phage(gi971750158)     1.95e-09            [Staphylococcusaureussubsp.aureusTCH60]

#### region 5 ####
complement(2461383..2461583)       PHAGE_Staphy_SA13_NC_021863: hypothetical protein; HMPREF0772_12338; phage(gi526244934)     3.30e-41            [Staphylococcusaureussubsp.aureusTCH60]
complement(2461751..2461903)       PHAGE_Staphy_SA97_NC_029010: hypothetical protein; HMPREF0772_12339; phage(gi971765375)     3.20e-29            [Staphylococcusaureussubsp.aureusTCH60]
2462278..2462832                   PHAGE_Staphy_StauST398_1_NC_021326: hypothetical protein; HMPREF0772_12340; phage(gi509140095)     2.79e-85            [Staphylococcusaureussubsp.aureusTCH60]
complement(2463081..2463644)       hypothetical protein; HMPREF0772_12341                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2463663..2464214)       hypothetical protein; HMPREF0772_12342                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
2464199..2464211                   attL                                                                                 N/A                 TATTTATATATTT
complement(2464211..2464684)       hypothetical protein; HMPREF0772_12343                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2464885..2465454)       PHAGE_Staphy_PT1028_NC_007045: ORF009; HMPREF0772_12344; phage(gi66395173)           7.18e-134           [Staphylococcusaureussubsp.aureusTCH60]
complement(2465451..2465792)       PHAGE_Staphy_PT1028_NC_007045: ORF014; HMPREF0772_12345; phage(gi66395178)           7.35e-71            [Staphylococcusaureussubsp.aureusTCH60]
complement(2465795..2466322)       PHAGE_Staphy_PT1028_NC_007045: ORF010; HMPREF0772_12346; phage(gi66395174)           3.37e-121           [Staphylococcusaureussubsp.aureusTCH60]
complement(2466373..2466591)       pathogenicity island protein; HMPREF0772_12347                                       N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2466609..2467187)       pathogenicity island protein; HMPREF0772_12348                                       N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2467199..2467540)       PHAGE_Staphy_PT1028_NC_007045: ORF015; HMPREF0772_12349; phage(gi66395179)           1.85e-78            [Staphylococcusaureussubsp.aureusTCH60]
complement(2468076..2468717)       PHAGE_Staphy_PT1028_NC_007045: ORF008; HMPREF0772_12350; phage(gi66395172)           9.53e-145           [Staphylococcusaureussubsp.aureusTCH60]
complement(2468714..2469094)       PHAGE_Staphy_PT1028_NC_007045: ORF013; HMPREF0772_12351; phage(gi66395177)           1.63e-88            [Staphylococcusaureussubsp.aureusTCH60]
complement(2469424..2471133)       PHAGE_Staphy_PT1028_NC_007045: ORF001; HMPREF0772_12352; phage(gi66395165)           0.0                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2471147..2472025)       PHAGE_Staphy_PT1028_NC_007045: ORF003; HMPREF0772_12353; phage(gi66395167)           0.0                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2472104..2472397)       PHAGE_Staphy_PT1028_NC_007045: ORF016; HMPREF0772_12354; phage(gi66395180)           1.20e-15            [Staphylococcusaureussubsp.aureusTCH60]
complement(2472398..2472781)       hypothetical protein; HMPREF0772_12355                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2472783..2472986)       hypothetical protein; HMPREF0772_12356                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2472971..2473147)       pathogenicity island protein; HMPREF0772_12357                                       N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2473138..2473410)       PHAGE_Staphy_PT1028_NC_007045: ORF019; HMPREF0772_12358; phage(gi66395183)           9.05e-52            [Staphylococcusaureussubsp.aureusTCH60]
complement(2473411..2473632)       PHAGE_Thermo_THSA_485A_NC_018264: transcriptional regulator, XRE family; HMPREF0772_12359; phage(gi397912660)     1.77e-05            [Staphylococcusaureussubsp.aureusTCH60]
2473804..2474049                   PHAGE_Bacill_Bp8p_C_NC_029121: putative lambda repressor-like DNA-binding protein; HMPREF0772_12360; phage(gi985761466)     8.53e-05            [Staphylococcusaureussubsp.aureusTCH60]
2474061..2474375                   hypothetical protein; HMPREF0772_12361                                               N/A                 [Staphylococcusaureussubsp.aureusTCH60]
2474447..2475790                   SAP domain protein; HMPREF0772_12362                                                 N/A                 [Staphylococcusaureussubsp.aureusTCH60]
2475519..2475531                   attR                                                                                 N/A                 TATTTATATATTT
2475780..2477024                   PHAGE_Staphy_PT1028_NC_007045: ORF002; HMPREF0772_12363; phage(gi66395166)           3.70e-127           [Staphylococcusaureussubsp.aureusTCH60]
complement(2477167..2477988)       NLPA lipoprotein; HMPREF0772_12364                                                   N/A                 [Staphylococcusaureussubsp.aureusTCH60]
complement(2478006..2478701)       PHAGE_Bacill_G_NC_023719: gp243; HMPREF0772_12365; phage(gi593777699)                1.76e-05            [Staphylococcusaureussubsp.aureusTCH60]
complement(2478694..2479719)       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; HMPREF0772_12366; phage(gi371496158)     1.89e-34            [Staphylococcusaureussubsp.aureusTCH60]
