gi|00000000|ref|CP002186.1|  Escherichia coli W plasmid pRK1, complete sequence. 102536, gc%: 49.95%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1594..3552                         PHAGE_Gordon_Hedwig_NC_031099: recombination endonuclease subunit; ECW_P1m0003; phage(gi100054)     1.03e-05            EscherichiacoliWMSVVKSEPDTTRKASRKSAKTQETVLSALLAQTEEVSVPLASLIKSPLNVRTVPYSAESVSELAESIKGVGLLQNLVVHALPGDRHGVAAGGRRLAALNMLAERGIIPADWPVRVKIIPQELATAASMTENGHRRDMHPAEQIAGFRAMAQEGKTPAQTGDLLGYSPRHVQRMLKLADLAPVILDALAEDRITTEHCQALALENDTARQVQVFEAACQSGWGGKPDVRVIRNLITESEVAVAGNSKFRFVGADAFSPDELRTDLFSDDGDGYVDRVALDAALLEKLQAVAEHLREAEGWEWCAGRMEPVGECREDAGTYRCLPEPEAVLTEAEDERLNELMTRYDALENQCEESDLLEAEMKLMRCMAKVRAWTPEIRAGSGVVVSWRYGNVCVQRGVQLRSEDDVADDADRTEQVQEKASVEEISLPLLTKMSSERTLAAQAALMQQPDKSLALLAWTLCLNVFGSGAYSKPAQISLECKHYSLTSDAPSGKEGAAFMALMAEKSRLAALLPEGWSRDMTTFLSLSQEVLLSLLSFCTACSLNGVQTRECGHTSRSPLDSLESAIGFHMRDWWQPTKANFFGHLKKPQIIAALNEAGLSGAARDAEKMKKGDAAEHAEHHMKDNRWVPGWMCAPHPQTDATERTDNLADAA
3607..4041                         plasmid SOS inhibition protein; ECW_P1m0004                                          N/A                 EscherichiacoliWMKTELTLNALQSMNAQEYEDIRAAGSDMRRNLTHEVMREVDAPANWMMNGEYGSEFGGFFPVQVRFTPAHERFHLALCSPGDVSQLWMLVLVNCGGQPFSVVQVQHIFTPVAISHTLALAATLDAQGYSVNDIIHILMAEGGQA
4038..4757                         plasmid SOS inhibition protein; ECW_P1m0005                                          N/A                 EscherichiacoliWMSARSRALIPLSAEQQAAMQAVAVTEQRRRQGRTLSAWPYASAFFRCLNGSRRISLTDLRFFAPALTKEEFHGNRLLWLAAVDKLIESFGEVCVLPLPSDAGHRLFPSVPFREGERRRQKTTLTEQKYSRQREREAERRELEYQTCFAQAQIDLAFHTPATVGSWLSRWSGVVEEHDLETIFWGWCGRFPSLSSFDRFFWQEEPLWRLIFEAGEAGRGAPVQVRALEQWMIPNKLENAI
4754..5350                         PHAGE_Entero_N15_NC_001901: gp43; ECW_P1m0006; phage(gi9630509)                      4.68e-18            EscherichiacoliWMMKSDEQYQVPVWMRPLLPLLCNTGGNDPEELLNDTETTASANIVRYVLIVAVRSQIDLLQLLYRKGLLRTEIPGGFSPEEAQELLDNLVRSHISKALSGERMAARDRNADLTWIRQQLVDAAWFVRATLEAHRMGVGNESPSAPPETMPDIQTRELVMLIKRLASSLKAVKPDSSVVREAQDWLCDRKLVDITDILR
5813..6313                         PHAGE_Rhodoc_CosmicSans_NC_028677: ArdA; ECW_P1m0007; phage(gi966199624)             1.27e-10            EscherichiacoliWMSVVAPAVYVGTWHKYNCGSIAGRWFDLTTFDDERDFFAACRALHQDEADPELMFQDYEGFPGNMASECHINWAWVEGFRQARDEGCEEAYRLWVEDTGETDFDTFRDAWWGEADSEEAFAVEFASDTGLLADVPETVALYFDYEAYARDLFLDSFTFIDGHVFRR
complement(7041..7892)             PROPHAGE_Escher_MG1655: IS150 transposase B; ECW_P1m0008; phage(gi16131429)          0.0                 EscherichiacoliWMKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV
complement(7889..8410)             PROPHAGE_Escher_MG1655: IS150 transposase A; ECW_P1m0009; phage(gi16131428)          2.32e-124           EscherichiacoliWMSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMYLKKLKALAHPTKK
8488..8922                         PHAGE_Yersin_fHe_Yen9_04_NC_042116: hypothetical protein; ECW_P1m0010; phage(gi100356)     2.90e-16            EscherichiacoliWMTVSSTISVFCRDGVFRTVYCHLHGEPTWNGRILHTHYATGQQAEALVEHGDIRCLGPRCDKPAGHTLQNPVDGVTAYYGRDSGFRMDSEAREYRSFMEAIATESTEEVRFHYVFIDGYWKVMYRTPEGWKMKSLALALRRCPK
9016..9282                         conserved hypothetical protein; ECW_P1m0011                                          N/A                 EscherichiacoliWMRPSIIFATAEYVKRLREECLRENKPLHRHTRFRRQELAQDEINPDVLAMSGHIARRCSEQKRVRIPAMKVSEWGHLLRALEIERVCH
9347..10237                        PROPHAGE_Escher_MG1655: predicted transposase; ECW_P1m0012; phage(gi16131287)        4.22e-102           EscherichiacoliWMSKKKTTTTPTPHDAAFRSFLANPDVARDFLELHLPAEYRQLCDLSTLKLEPATFVEPDLHQYASDILWSVKTTGGEDGYVYTLIEHQSTENLYMPFRMLRYSVAAMQRHLEQHKTLPLVIPVLFYHGERSPYPYSMNWLDCFENPALAAKIYTKPFPLVDITVVDDNEIMNHRRMAALTLLMKHIRHRDMMELLDKLPQVMVEISDEQVRVLIHYIVNAGDSVSPEFMRALAERLPQHEDKLMTIAERLEQKGRQEGALEKALAIACQLQKMGMTPEQIKQATGLSDDELKKITH
10300..10458                       conserved hypothetical protein; ECW_P1m0013                                          N/A                 EscherichiacoliWMTIAERLIQKGALEVAREIAWRLRDMGWTPERIQEATGLSGEELKKLFPDEQ
complement(10489..10740)           PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; ECW_P1m0014; phage(gi374531851)     1.49e-06            EscherichiacoliWMTGWELRIWRKSMLWSREKAAREFGVTQRTWHAWENAEQVDVTVWRTTQALSVRDLLPHMQGMRKADIIRRLENELGETAEDV
11116..11280                       conserved hypothetical protein; ECW_P1m0015                                          N/A                 EscherichiacoliWMYQPQNFLPLASKTFASAPGQLPRDVVIVPRRKGPLRGNTLRPGRQKELRSSGK
11322..12170                       PHAGE_Pseudo_phiPSA1_NC_024365: DNA restriction methylase; ECW_P1m0016; phage(gi658307732)     3.64e-18            EscherichiacoliWMNQTLPTADLNTAGTTDVIPSVAIDRIIAQRNEGIALFMQAMECLATARKILLDASGDIFLYGFEDCVTDSVRRMDKPEEAKRNITRLADRKIWDRLMTDTGMYTFMSSCQRDEWNSQLMSDTCPEITLDNVLATFHHLNASKMQTFEQGLIDVYRKLSWDYRTNNPCRLGKRIIIENLLYRWSNGRVTLDCSGREALDDLVRPFYLLEGRNVPDFRSSIGAQYGEFLGNGDNVGELFEGEYFTVRGYQKGTVHIVFKRPDLVEKLNDIIARHYPGALPTRV

#### region 2 ####
91180..91191                       attL                                                                                 N/A                 ATATCAGCACAG
91350..92129                       PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; ECW_P1m0100; phage(gi764159894)     8.21e-07            EscherichiacoliWMTGLVTLGQLPGTAAQLPVSIDYPAALALRQMALVQDELPRYLLAPEVSALLHYVPDLHRKMLLATLWNTGARINEALALTRSDFSLTPPYPFVQLATLKQRTEKAARTAGRMPVGQQTHRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFSMPESDAVSMLKRIP
92310..92954                       PHAGE_Burkho_phiE12_2_NC_009236: gp12, partition protein; ECW_P1m0101; phage(gi134288738)     4.13e-07            EscherichiacoliWMPVIANTHPKGGVGKTTSSVNIVGEMKSDTVDLDTHTGLSIILGLRPEGKEISVKVPKTVDELIEIMTPYKNSDKTLLIDCGGFDSDLTRTAIAFADCVIVPSKDSLTERIGLMHFDGVLDEISSIMGTDITAHLYLCKVNPNKKKFPKLDAILPSFKHLKLMKSRISARAEFEDVIETGMGITESVHGRYSAGGKEVIALIEEINHLIENNKQ
93041..93349                       putative 60 kDa chaperonin; ECW_P1m0102                                              N/A                 EscherichiacoliWMSKAKFSAQAEKLKNLVDSARLQTSSSAVTATAPSQPNEGAEEVSGRPVAARTKAKNLKAIPLSYFEAHAELKATSKTSLDFSSYIIEAIREKLERDGAIGQ
93763..94743                       PHAGE_Entero_P88_NC_026014: recombinase; ECW_P1m0103; phage(gi744692717)             6.62e-106           EscherichiacoliWMKIFIDDGSTNIKLAWLEDGDVKTLISPNSFKPEWSFSLLDDAAPANYEIDGEKFSFDPLSADAVVTTETRYQYSDVNVVAIQHALQQTGLKAQPVDVIVTLPISEYLDANNQKNKQNIERKKKNVMREVRVQGSDAFVIRSVSVLPESIPAGFSVLAGLEDDESLLIVDLGGTTLDVSHVRSKMTGITKTWCDPNIGVSLITSGVKEQMAVHANTRVSSFQADNIIVHRNEPDYLSRRIYNAEQRESIINVINERQKLLIKRVNDVISRFTDYTHVMCVGGGAEIVAEAVKNLTKVPDERFYLSSSPQFDLVMGMIKMKGGVTNE
94736..95152                       Plasmid stability protein; ECW_P1m0104                                               N/A                 EscherichiacoliWMSDENKSRRCSFELFPDERTGDKIADELIANEKLKERGRFMRAMLVTGAAFAAIDKRLPLLISELLTENTTLDDINKVISSVIPGAFSVEKKLLELLEKQSGLHTSVDCSTPLTEQSLSRNDGEDQTRRNAENMFGDD
complement(95154..96428)           PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; ECW_P1m0105; phage(gi431811050)     0.0                 EscherichiacoliWMFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEAKALGIRMGQPWFQVRQMRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDEMFIDLRGINHCISPEFFGHQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFSGVVALTAENRNRILKLLGLQPVGEVWGVGRRLTEKLNALGINTALQLAQANTAFIRKNFSVILERTVRELNGESCISLEEAPPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAAEKLRGERQYCRQVTTFVRTSPFAVKEPCYSNAAVEKLPLPTQDSRDIIAAACRALNHVWREGYRYMKAGVMLADFTPSGIAQPGLFDEIQPRKNSEKLMKTLDELNQSGKGKVWFAGRGTAPEWQMKREMLSQCYTTKWRDIPLARLG
complement(96428..96865)           PHAGE_Cronob_ENT39118_NC_019934: protein umuD; ECW_P1m0106; phage(gi431811072)       1.60e-26            EscherichiacoliWMSTVYHRPADPSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRPALEPVSDSPEFRTLYPENICIFGVVTHVIHRTRELR
complement(96862..97110)           PHAGE_Sodali_phiSG1_NC_007902: ImpC protein; ECW_P1m0107; phage(gi89886014)          1.19e-20            EscherichiacoliWMIRIEILFDRQNTKNLKSGTLQALQNEIEQRLKPHYPEIWLRIDQGSAPSVSVTGARNDKDKERILSLLEEIWQDDSWLPAA
97221..97490                       conserved hypothetical protein; ECW_P1m0108                                          N/A                 EscherichiacoliWMWLYACCGLLCPAYPQHFAHGSVNKIPGYPGRAGTLTGLHPMQVCRCRRPPHPVTFRRSSSTRCGFGAAPAFVCGRPVTGAARPDGGRM
97504..98430                       conserved hypothetical protein; ECW_P1m0109                                          N/A                 EscherichiacoliWMPNWCSNRMYFSGEPAQIAEIKRLASGAVTPFYRRATNEGIQLFLAGSAGLLQITENIRSEQCPGVTAAGRGAVSTENIAFTRWLTHLQNGVLLDEQNCLMLHELWLQSGIGRRRWKGLPDDVRETITVHFTAKRGDWCDIWGSEDVSVWWNRLCDNVVPEKTMPFDLLTVLPTRLDVEVNGFNGGVLNGVPSAYHWYTERYGVKWPCGYDLNISSQGDNFIQVDFDTPWCQPESDVIAELSRRFSCTLEHWYAEQGCDFCGWQLYERGELVDVLWGELEWSSPTDDDELPEVTGPAWIVDNVAHYGG
98427..98738                       conserved hypothetical protein; ECW_P1m0110                                          N/A                 EscherichiacoliWMKYDGDGRETARFFSDKGCRRAPLFTAPADAARHKRCLWSVSRVRRARDGRFYRSRLASVTVYASPSPFSDERPSSRFRGITLPSERRRLRYSTVGLTRYRTR
98814..99497                       PHAGE_Staphy_Stau2_NC_030933: aerobic ribonucleotide reductase B subunit; ECW_P1m0111; phage(gi100063)     1.99e-28            EscherichiacoliWMSRFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRTIAGDKTDEWLQPACNEMFRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKGRPRLPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAANDDWFMPEAA
99498..99719                       PHAGE_Entero_N15_NC_001901: gp50; ECW_P1m0112; phage(gi9630517)                      6.70e-07            EscherichiacoliWMNYAGHEKLRAEVAEVANAMCDLRTTMNEMEQRYSFNADTLPERLVRQTLFRANRLLMEAYTEILELDACFKD
99733..100167                      conserved hypothetical protein; ECW_P1m0113                                          N/A                 EscherichiacoliWMYGTCETLCRELAVKYPGDMPLMLVIWSPEEIQALADGMDISLSDHEIRTVLARLEDIPEDQRTESGISSGVAMEIINNVSENRQVTVPAELLASLIQTAEQALWKREWAARDHGLAVPECVTRRQAVINQARTLLKNNRHEND
100213..100989                     conserved hypothetical protein; ECW_P1m0114                                          N/A                 EscherichiacoliWMNENTTLNALICRHARNLLLAQGWPEETDVDQRNPKYPGWISIYVLLDAPRLATLLINRHGGVLPPLLASAIQKLTGTGAELVLSGSQWQSLPVLPADGTQVFFPYAGEWLTEDEIRAVLDAVRDAVRSVSCRVAEDAQRIRAALTTTGQTLLTRQTRRFRLVVKESDHPCWLDEDDENLPVVLDAILNRGARFSAVEMYLVSECVEHILSSGLACDVLRIPDEPPRRWFDRGVLREVVREARAEIRSMADALAKIRG
101400..101825                     PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; ECW_P1m0115; phage(gi162135127)     3.86e-16            EscherichiacoliWMQYAKPVTLNVEECDRLSFLPYLFGLDFLYAEASVYALAKQMMPEYEGGFWHFIRLPDGGGYMMPDGDRFHMVNGANWFDRTVSADAAGIILTSLVINRQLWLYHDSGDAGLTQLYRMRDAQLWRHIEFHPECNAIYAALD
102295..102306                     attR                                                                                 N/A                 ATATCAGCACAG
