gi|00000000|ref|CP002290.1|  Pseudomonas putida BIRD-1, complete genome. 5731541, gc%: 61.74%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
3114451..3114462                   attL                                                                                 N/A                 GGCCCGACCACT
complement(3114555..3117596)       PHAGE_Pseudo_PS_1_NC_029066: tail protein; PPUBIRD1_2752; phage(gi985757719)         0.0                 PseudomonasputidaBIRD1MMTIEGWLQRNVPGYVPRSSPPISIEVNGVFISPDHWGKVEFSPMDTVRIYPEPKGTGLEVAVWAVVAAVVAVGVIMLTQKPLATPTNKSQKGQSLNLAKTTGNQVKVGDIIREVAGRTRIFPDYLVPPRHYFVNETEQWVEMLLCVGVGEFEINPTDVKIGDTPIASLGSTARYRIYGPGESLADEPARLWWHNSTEVGSTSTGGAGLTLTTTTTVAQQFTGESVLVADHVLTVPEGAGWFPLGWDSGMIARIEVPYPYTYTGPVDGSATVVSGPHLTMLKPFVGMRIEISGANAGEYVVASYTPEVPGTPAVPGSASMVTGSAAPTRFDFNVTPLSFTVSRGVSDFPVALTTATTDLAGLVSAVNAALAGTPLVASASSGRLRIAEQAAPFTGTGLTITGVVVDILGVSPMSATGVKSEAATDGQDASMTMAYDGGAPAVGLQTGELLSSIGYRDMRYRITEVSDDSVEDDSETPEDESHGPSAITVVRLTDTGSVDDEWDGFDAIQSNGVSAVLDGSTTEGDWAGSFVVCPEGETVRRVELDFFFPSGLIRYTEKNGNQRQVSVKVEAQYRDASTAGDWTSVFWTFTATRRDQIAFTRAVTFPTYMRGEMRVRRIGEESTANTKQDRVQWYGMRARIDKAPLRYPGVTVIAVYARGGTKLSAQSESQVSVIGTRKLPVLVDGAWSAPTATRNIAPWVHYVAEDAGATDDDLDIEEFVRHGATWQSRGDYFDFAVEEAGTVKDALNDALKAGFAKFTLERGRITPVRDELRTQIGKMYTPQNMTSSLKRAFTLPAPDDYDGVLIKYRDGNTWAEETVKCKLDGDAFSRVEEITLDGVTDRDRAWRYGMRQRRAQVYQTKSYSWSTELSALNSGYLSYDAVADDIPGYAQSAIMVDCSHGEGPVIVESSEPFTWESGKTHVLAVRRPDGSVSGPWAAARLDDYRVIIPTIDFEPDLSLEIEPPHLLFGVSNRWCYPVLITSIEPGDYSADMEAVNYDARVYADDDNFAPEDA
complement(3117631..3118032)       PHAGE_Pseudo_PAJU2_NC_011373: hypothetical protein; PPUBIRD1_2753; phage(gi209552440)     9.19e-33            PseudomonasputidaBIRD1MFESYLAATYEDGGRGPARFDCWGMARAVRHEVYGLRLLPSWGYVRNTMPMEFTRAVNHEAVGMERCEPEVGAIACVWRGDICIHVALIVEAEGRLHGLEMKPTGATIKPLRRFQEQYLKVSYHRDRILPEQA
complement(3118032..3118517)       PHAGE_Pseudo_PS_1_NC_029066: hypothetical protein; PPUBIRD1_2754; phage(gi985757717)     1.44e-57            PseudomonasputidaBIRD1MTAIATLYASGGKAWIIPTLELRCPAWPAPIYLCAGFDDVLATLETGAKVKFTAAAFDAALPKRDDSGSQTLTFAIDNVTGVAQQLIDQALEARQKITLVFRIFLSSDLSAPAEKPYRMTVLSGFMEGASVQLQAGYSDYINLAWPRRKYTLSFAPCLRYA
complement(3118514..3121849)       PHAGE_Pseudo_PMG1_NC_016765: tail tape measure protein; PPUBIRD1_2755; phage(gi374531664)     7.01e-86            PseudomonasputidaBIRD1MAQASERIDKSLERVDGAFDRAGESAQQAAGMIKSALAAAVGAASVGKIIETADSYGQMSDRIGMATSSVGEYNQVQDRLLETAQRTFRPLSEAQELYIRTSDSLKSMGYNTSQALDVMDSFSFLLVTNSATADKASSAIDAYSKALQTGKVEADGWQSILAAMPSVVDTIAKATGKTAEEIRTLGAEGKLSLDVLTDGLQKSAVANGLLADSMSVAVRDAVQNLSNAFTVYVGRLNETTDFTGTLASAIGVLGSNFDTLADVAVVAAVAALTRYGASAVGSAALAARSAYQDVVARKAQATAVLLAAQAEQQKAQTTVFLAEKEAVAARGTAVQTQMSLQLAEARLVETRATNAVAAAQQAVSRAGVSLLGILGGPVGVATLALGAATAFMMLRDNTSVLEEKLGDLADPVDKLIERFGELNRATQSVTLRQLQSEIDDMQSRLGQKSGAIADQFENDLRNIGAAGADGLIAGLAPLPAEAQNALDLVRKASRDQAAGMAVDWKAVADQLRVIPGVTESMAQAIEESQGPVTELSAELDKQRAAFAALTGETDENTRAERENEAAKAKAAGVGKAYLEQLQKQLGAAQDKTSLAAANRFIEENTDLTEGMIVAIRSAAAAKDAQKAADDAAAKASRKNSSVTDSSAKQQLKSFESTEEGYQRQIELINTTGDKQKDATEVAKLSFELQEGKLGNLSKVQQKRLLELAAELDALNKIKKANEDDLKLSAFRAAQQAGTQTAANGYAQELAGIGMGHKARDRMRADLALRQKYVEDLQNLNEQRNAGQLAPELYASETQVLQEELGKRLQAQQDFYAAVDEQQSNWMNGVHEAWANFADDAQNYSAQAADATTNILGSARSELSTFMTDVATETESAGDALGNMLSGFAESVLNALADMAAQWLIYQGVQLLVGKTTQASAAGMMAANAQATALQAGLAAFASTAAIPIVGPALAPGAMATALTIANPLASAVGMTAMSGVGFMDGGYTGHGRKDEVAGPVHRGEYVFDAEATARIGVGTLEAISDGRAAFVGGPGSSSAATADSVPSTSPAPVQPAPQVNLYEDASRAGQVQMSTGPDGRQILDICVASIRQGGVLAKAYEQTYGAKRVGR
complement(3123247..3123576)       Hypothetical protein, conserved; PPUBIRD1_2757                                       N/A                 PseudomonasputidaBIRD1MNNTLHGTVTVNLGDEVFTLTPTLKAVRAIESRFGGLRGASQAITSLSVDGCAAILVAGAGLDDKAAKAVPEQVWLHGVLDASTQLNAYLVALYNPRGKELGNDQAGTA
complement(3123617..3124120)       PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; PPUBIRD1_2758; phage(gi472340186)     2.32e-12            PseudomonasputidaBIRD1MPAEDNLNTAAGCRLFIGSKTGATTKTEFEADTYVRVGEIEDLGEFGDTFSSVTFTSLEDGRVRKYKGTADAGDMTMTVGLDNGDAGQNAVKTAHKDRSKGDYNIKVTLNDGDPDASPAISPTTFYYRAKVMNNTVAAGAADNVVRRNITFGINSEILELLPAPVIP
complement(3124176..3124562)       PHAGE_Marino_P12026_NC_018269: hypothetical protein; PPUBIRD1_2759; phage(gi399528327)     3.45e-12            PseudomonasputidaBIRD1MADPSLALQEAIFARLQAEVSCPIYDGAPLNADMPYVSIDREVSVNSSPISGRKRETRLLYLSVWSDAVGQAEVKRINGEVIAALDERRLPLEVGRAVSVRVEQADAQRDADGITYQGSITVRVITTH
complement(3124555..3125055)       HK97 family phage protein; PPUBIRD1_2760                                             N/A                 PseudomonasputidaBIRD1MARRSSIRGDIRLRRTLRNIHKTMDNELQPAMLEAANRILETQRQLMPKDTGAAAAALTVYVSPSGLDAQIGIRGKRANRKFYYLRFIEYGTKGYLGGKRTGNRNRKATNKSDGTHFFGKYPDIPARPAHPWLRPSMQVNHEYVMADIEAAVRRTLRKASQGVGNG
complement(3125059..3125238)       Hypothetical protein, conserved; PPUBIRD1_2761                                       N/A                 PseudomonasputidaBIRD1MKIQALGPLTGASGEREKGEIFDVKKEYGEGLIARGYAVEIKDQPAATEKPAKAAQAKE
complement(3125570..3125911)       PHAGE_Psychr_Psymv2_NC_023734: phage head-tail connector; PPUBIRD1_2762; phage(gi593779766)     8.54e-12            PseudomonasputidaBIRD1MSVISMTIARHHLRDPDDADEYLELLIEAAEGQAMDYLNRRFYADQQALDEAIASGEAGDSPMVSNKQINAACLLILGHLYANREDVVIGTIATELPKGSLALLTPHRIGWGV
complement(3126496..3127680)       PHAGE_Pseudo_PMG1_NC_016765: major capsid protein; PPUBIRD1_2764; phage(gi374531651)     0.0                 PseudomonasputidaBIRD1MDFEAQVKELNASLKGIGDQIKSQAEATEKQIKASGEMNIETRAKVDELLTKQGELQARLGEAEQKLVNASRDRNHQEEPQKSVGALVIESEEMKDMNSSFRGSRRVAVPRAAITTATGGDLVETQRLPGIIAPPQRRLTVRDLVAPGTTESNSIEYVRETGFTNNARTVAETTAKPYSDLTFGLATANVRTIAHLFKASRQMLDDAKALQSYIDGRARYGLNMAEEAQLLYGNGTGVNLQGLMTVAQMYAAPAGVAVVGEQRIDRLRLALLQAELAEFPSDGIVLNPIDWAAIELTKDGEGRYIIGQPQEGTNPKLWNRPVVSTQAMTQDDFLVGAFKLGAQIFDRMEIEVLISTENSDDFEKNMATIRAEERLAFAIYREEAFVTGQLTGTP
complement(3127683..3128540)       PHAGE_Pseudo_PMG1_NC_016765: Clp protease; PPUBIRD1_2765; phage(gi374531650)         2.11e-82            PseudomonasputidaBIRD1MKHKIQSRGLRSEMSPRALDKWNPAIQAAVENTSDTITVYGVIGEDWYGEGVTLKRIDAALRAIGERDVTVYINSPGGDMFEGIAIYNRLQEHSHEVTTKVLGMAASAASIVFLAGKKREVASSAFLMIHNCWTWLAGNRNYLRDIANDMEEFDAAMADLYAETSGQSAEDMAELMDDETYIRGKRAVELGLATGLLSSTEVTERETEDAAQANALKAMDVALAKGGMTRSERRELFANFKSGMPRAAGGGTHNAAPPDKPRAVAPDLSASLSAATNILNSLKGK
complement(3128544..3129854)       PHAGE_Pseudo_D3_NC_002484: portal protein; PPUBIRD1_2766; phage(gi9635589)           0.0                 PseudomonasputidaBIRD1MIKTLSQALGAAATKPSASMSEWLGKTIKLSDGGFWSAFNGAQSSSGKSVSVDKAMRLSTVWACVRIISTSVAGLPLSIYRRMPDGSRESARDFPLYDVVHTSPNEDMAAFHFWQAVVASMLLWGNAYCEIHRSAGRVIALDFLMPSRVDLEFDDDGRLRYFFRPRKGARREIQRQDMLHIPAFTLDGRVGLSAIRYGADVFGSAMSADDAANSTFRNGMMPTVAFSVDKTLNPAQRVEFREYVKTISGALNAGKSPVLEQGVKPEMIGINPADAQLLESRGHSIEEICRWFGVPPWMVMKTDKGSNWGTGLEQQQIAFLTYCIMSFTAPIEQCVNKWCMTAVDRIKFYAEYSLEAFLRADSAGRAAYLSTMGQNGYLTRNEGRRKENLPSMPGGDVLTVQSNLVPLDQLGNQNDGQAARAALMNWLQEPESKSRE
complement(3130005..3131684)       PHAGE_Entero_YYZ_2008_NC_011356: putative phage terminase-like protein large subunit; PPUBIRD1_2768; phage(gi209427775)     0.0                 PseudomonasputidaBIRD1MQWTTACPDWWRCLAAGESIIPDPLFPDEAEAGLEVFKGLKIVDAPGSPTIEAACAPWVLAFAGAIFGSYNSETGERLIREVMLCIPKKNSKSTIAAGIMLTALIRNWRLSAEFIILAPTKEIADNSFIPAKDMVNNDDELKALLHVQPHLRLITHRETGATLKVVAADSDVVGGKKAVGVLIDEAWLFGKNPKAADMIREATGGLLSRPEGFIIWLTTQSNEPPAGVFRSKLNYARGVRDGRIDDNRFLPIIYEFSQEMIKSGEARKPENFHLVNPNIDYSVDRPTLERLFMQAELDGEAELRGFLAKHLNIEIGLALMSDAWVGAEFWEPQGATWLNLDEILTRCEVIDVGGDGGGLDDLLGLAVMGREAGTRRWFHWAHAWAHPSVLERRKSEAPRLRDLEKAGDITIVERIGDDVEQFAAIVARVNDTGLLDKVGLDPAGIGAVLDALADAGVEEDKIVGISQGWKLTGAIKTTERKLAEGTLLHCGQPLMAWSCGNAKGVPSANAFLITKQASGTAKIDPLMATFNAVSLLSLNPEGRGGMDNFMAGIRDPLIA
3132835..3132846                   attL                                                                                 N/A                 AGCAGTTCCAGC
complement(3133327..3133629)       PHAGE_Pseudo_phiPSA1_NC_024365: lipoprotein; PPUBIRD1_2770; phage(gi658307755)       7.59e-25            PseudomonasputidaBIRD1MEFIARRWWRRIEVWVIAWLLVVGGGFGGYQLAQWALARAYLEQVAEVRKAYDAATEQRDLRLDELARQTGNAAAKASKAATTATQAADKADEALNRVSP
complement(3133644..3134015)       PHAGE_Pseudo_phiPSA1_NC_024365: chemotaxis protein; PPUBIRD1_2771; phage(gi658307754)     1.06e-60            PseudomonasputidaBIRD1MDPTDLGPGTATWLGGTGTVLLGGFLWLRKFLSKDAADRAMDNADIGTVRRLNELLDSERESRKLAEARADQFAKERNDLAATVGRMEGKIEALTSQVASLTERVTLQSDEIARLRIKLGGTA
complement(3134041..3134463)       Host specificity protein J; PPUBIRD1_2772                                            N/A                 PseudomonasputidaBIRD1MQSANYVPGVAGWKIHDGVRLELNDGNRRIYAEVKMVTTAGPGQTNQQAAQSIRESADAVAVERLTTRVTRQNDNLLTADASGYITGEKPARQAAEDVRRQEAADIANAKRMGALDGDLADTVREVIREEIRPGGMLHSH
3134832..3135233                   PHAGE_Acinet_YMC11/11/R3177_NC_041866: hypothetical protein; PPUBIRD1_2773; phage(gi100076)     1.43e-28            PseudomonasputidaBIRD1MQYPICIEWGDENTAIGIQIPDIPGAVTAGDTFEETYASAVEVAHIMLEEIAGSGQAIPMPTSAAAHRSNPDFAEMGWGMLEIDITPYLGKTEKVNVTLPGFVIQQIDRYVRDHNVKSRSSFLADAAMEKLGR
complement(3136042..3136383)       PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative antitermination Q protein; PPUBIRD1_2774; phage(gi589286935)     1.68e-13            PseudomonasputidaBIRD1MLEQWGWWRMDGMGVPQYVCPLYALMKEHVPAEGGLKQYVITDDLALAVDGAVARLNKRNPQMGGFVWLYFGAKWPALRIAREHKMGEAKARELINTGVAWIDCALEQLREAA
complement(3136443..3136670)       PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; PPUBIRD1_2775; phage(gi100058)     4.62e-08            PseudomonasputidaBIRD1MFHELPCDHCNASGFVVAATGEALALDELVTQLSMRLQAATRQIEQLKNPQASGPEATYQGSNRRGAGGTNYTGD
complement(3137032..3138330)       PHAGE_Vibrio_X29_NC_024369: integrase; PPUBIRD1_2777; phage(gi658311188)             4.76e-83            PseudomonasputidaBIRD1MSATREVKLSEAEVRRQAADKSVRDLRDPRHPGLYLRFWSNRERGTWHLVRGKKWVPIARWPDLTVAAVIAELPVLRQRLLRDPATAPVVSGMATVGQLLDWYGDRMARDRSLSAKRKAGARSAIAQHLKPRLDDLALADVSADALDKHLMWPCQAEVSLSYLRQMFALLLTAFRQALQLGLIDRNPMAGMRFNDFTKAKILPKAARLRDVQLPELMQQLAQAFQQEPGDAMLALMMLAHGTRIGETRMARWNEISLAAAEWFIPAANAKTRTEHRLPLTAQVQALLTRYRAIQQAEGYEGVYLFPNRRGLCLSETQASNVFKRLGQGEWTSHDLRKVSRSTWTDLGIDGHIGEMLLNHKLGKIASTYIHTQAMQQRRAALEKWHGWLDRIGFAAIHGLTKALFEISQNSPEATAAVVPNDLTAFVISEDSK
complement(3138327..3138755)       PHAGE_Butyri_Arawn_NC_048848: HNH endonuclease; PPUBIRD1_2778; phage(gi100046)       3.81e-26            PseudomonasputidaBIRD1MNSPAIRPFRAKPARAKPVDREGQEQAALMQELQLRYPQAYKLIYHVPNGGHRVKAVAAKLKGQGVKAGVPDLVLPMARGGYFGLYIEFKAMPPFDAPVSPSQDAYLQALADQGYLAIVCRGNIDAVEAIRAYLLLPATVAA
complement(3138752..3139048)       PHAGE_Salmon_103203_sal5_NC_031946: minor tail protein; PPUBIRD1_2779; phage(gi100056)     4.93e-41            PseudomonasputidaBIRD1MRQTKLTKAARGRECQVRIPGVCNGNPETTVLAHYRLAGTCGVGKKPHDLQGAWCCSACHDACDGRSRDVDRATARQYHAEGVMRTQALLLNEGVFVA
complement(3139051..3139860)       PHAGE_Pseudo_phiPSA1_NC_024365: ATP-binding protein; PPUBIRD1_2780; phage(gi658307749)     1.58e-59            PseudomonasputidaBIRD1MRSESVITMSDVRNAAGFRVQPAHCEHHGDFEQRVTMLMGREIVGRCSECEKAAIAERHAKQQVEETRLKREAMSRKLGSALIPKRFADRTLANYRVEHEGQRKALAYCTRYVAAFEEIERTGRCLMLLGKVGTGKTHLGAGMANELMRNTSATAVYRTVGAILQSIRATYDRHSEQSEADILSSLIEPSLLVLDEVGVSKEQPSEFELTTLFSIINGRYEQLRPTVVISNLEAGQLRHAMGERCYDRLREGGGVVVPFEWDSHRGKES
complement(3139850..3140662)       PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative replication protein O; PPUBIRD1_2781; phage(gi589286926)     3.72e-34            PseudomonasputidaBIRD1MDNQLMDGLLAIDLPAREMKIVLYVAKATINFGAGAQRIPATDIAKAIHAHPDTVSKAISSLLRRRVLFREGGARGDIGVNDPKDWVYVTEPKQTKTAESAQVVRIGEESKQTKAADSLLYSKNLTPYVFLPSEENTCPPNEADEPSAKTDRKAPFGKAAMLADNPHGLDESLIADYLVVRKAAKAPVTARIWSALNAKLEQCKAFGIQPAQALEVAVENGWRGFEVDWVTKRISAQLPAKANPNSRHHGFSDRDYTGGLTEREDGTYAI
3141164..3142045                   PHAGE_Pseudo_phi297_NC_016762: putative phage repressor; PPUBIRD1_2782; phage(gi374531272)     2.80e-55            PseudomonasputidaBIRD1MTKKRILPPDRLAECEAAHALFLARKNELKLSQKKIADEAGMTPAAVNLYFKGLNPLNAKFAAVLARLLEVPVEQFSPRLADEIRSLRSLPAGDQEHKKGAAEKVMAMLKQHAGKKLDEDAQQKIAAAVAESLVEDRPSNVVSADFSGLKVKKDEIFIPQYDIRASMGHGQVPPDYTEVMRNVIVKESVLHEKGVTYTSQSALAMIFGWGQSMEGTINDKDPLIVDRGVNEFVGDGIYVLTWHGHLYIKRLQFFDEDHFWLISDNEKHKDQQARIDDVTIHAKVLLIWNAKKA
complement(3142074..3142391)       PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909: minor tail protein; PPUBIRD1_2783; phage(gi100055)     1.91e-21            PseudomonasputidaBIRD1MAKQNKTAPTQQHQGMTALERLGLRVSNMINHPKAQEQRWVAIHRLDTDGDAEWGEIMRILSETDGLEITQLEEGGIKIEWEMQSVDDREAPIEELEALEEEAPF
3143197..3143580                   PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; PPUBIRD1_2784; phage(gi100010)     1.74e-30            PseudomonasputidaBIRD1METITCGSWIGQLGKALAPRELEALLWVAQGLTTKEIARQMAVSPGTVANRIEAALFKLEAGRRIEAVTKAMRQQIISPLCIALAALITMHAVIDDSDPMRRDRRTPERRTAQVRIVRKAEAFELHA
3143599..3143937                   Hypothetical protein, conserved; PPUBIRD1_2785                                       N/A                 PseudomonasputidaBIRD1MQAAIQESQGKLDALRQEVITATEAFRAKSRFYVTQSGNGWIVVSSSNNRVYGRNTSYPQAVRYAESLERAIDAKTLPVVAVVKVRQIGESATRWTALFALALILLAGAASS
3143934..3144431                   PHAGE_Xantho_vB_XveM_DIBBI_NC_017981: single-stranded DNA-binding protein; PPUBIRD1_2786; phage(gi389060431)     6.70e-65            PseudomonasputidaBIRD1MSRGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKRSGEKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIEGKLQTREWEKDGIKRYTTEIIVDMNGTMQLLGSRPQGQQPGQVPDRQPQQRRPARQQPNQQAAPPDHDSFDDDIPFAPLPYLAGA
3144434..3144595                   Hypothetical protein, conserved; PPUBIRD1_2787                                       N/A                 PseudomonasputidaBIRD1MKRRQQVHPTAYYLGRSCRDNSQSRDAQPYGWMTVDCGWWLAGWHDRDMELSA
3144684..3145031                   PHAGE_Vibrio_VvAW1_NC_020488: hypothetical protein; PPUBIRD1_2788; phage(gi460042912)     7.25e-32            PseudomonasputidaBIRD1MSKPTDTTEFLQELNGGAFASQIGHALSEVAAGVVDHGKTGKITITLDFSQIGDSHQVKIKHKLDYKVPTKRGTRSENTSLDTPMYVGTGGNISLFPEKHDQLFTRDEAPVHPRS
3145058..3145873                   PHAGE_Entero_SfV_NC_003444: hypothetical protein; PPUBIRD1_2789; phage(gi19549018)     1.14e-64            PseudomonasputidaBIRD1MSLSKEALELIQENTIAAVGRDLPALGPVVVVPQNFNVVDLERYQEGRNRFRGTYSTHSLADYSAYVVERAAPAARGFIDQDNMSCIVLFNIGTAEEPGHADDRAVLRLKASAAFAAVQAVCGQSLVQKAMSDWIEDWNQHLSATDENGQTMTIAKAIAAVRTITVKASSESDHAVGETRASRSTMDQIEASSKETLPAWLDFKVIPFEGLGEQVIRLRVSVITGGSQPVLKLRWIGEEAQREAIAQEFKAVLDEKVGTAANLSLGTFDAK
3147050..3147496                   PHAGE_Gordon_Nymphadora_NC_031061: capsid decoration protein; PPUBIRD1_2790; phage(gi100066)     8.32e-06            PseudomonasputidaBIRD1MVLTRSKAPLMLQLPQERHVPAASFLDFDAGRWSQIEKPGRAQATLDRVCNGRQRFGDRFIMPYYGKGSGTTGRDINRPIGTITTLDRWALVDGDRMRMLSASEALAAMSFPADTLRPDSHRLTMHMAGNAVPPLAGQRVIEALMKAA
3148244..3148894                   Hypothetical protein, conserved; PPUBIRD1_2791                                       N/A                 PseudomonasputidaBIRD1MVSVPPYIGLEPLVGRYYPAKCRRCGWVGSSEELTEDDAQCTRHVGDRLCLGDCDELERHDLLNIIQAMAQRPHPEPIAWMVGTAFWWTKEEAERDAKAMRSPVIAVGPIGDIGLAGEMLRRADRREGKWASLCAGRSNQIAELRAQLAEAQEVLKDCIEVGELDAETEWKARLVSKGRRLYVDDRALANSPESGSTIERGPWQHPHRSWSDRTSG
3149959..3150600                   PHAGE_Pseudo_phiPSA1_NC_024365: hypothetical protein; PPUBIRD1_2792; phage(gi658307728)     2.47e-56            PseudomonasputidaBIRD1MGELGACPYGEPGDRLWVRESWAADAQLDGISPRDLSQGEPIMYPADGSVRQTGCAMVSQGRGRPSIHMPRWASRILLEITEVRVERLQDISEDQAEAEGVNFLRHVPDADETLTAAQLFECLWSSINGDESWSSNPWVWVVEFKAIDPDAAGCDYHGSHFGAPYPDAQCVDGFLWDEDSCDVPGGPLLSGGDIPCPKCNAEAYTEHQREANQ
3150597..3150848                   Hypothetical protein, conserved; PPUBIRD1_2793                                       N/A                 PseudomonasputidaBIRD1MTRLALCLLLLATGASATENVIDVQHDSQRGVTCYLLNGVGISCIPDSQLQAGNQRQLSPHETQPEPTPALAPGRWIDERYQL
3150845..3151072                   Hypothetical protein, conserved; PPUBIRD1_2794                                       N/A                 PseudomonasputidaBIRD1MTTFIMEYRVIGYSLAHAFSTNPKAGKRIFSVSSDDIGSTDILAVIDAARSPENTPDGYKLFSVTDHDAAKVMRP
3151069..3151464                   PHAGE_Pseudo_JBD44_NC_030929: primase; PPUBIRD1_2795; phage(gi100047)                2.15e-12            PseudomonasputidaBIRD1MTDLIEVRVSNLIGAPLDWAVARAEGFEADPVCRTTVWRTPTDPISISIRGATEGFGYRPSSHWDHGGLLIDKHKGTAQHIPGLPEDTCYAGGPAGAGVWCYGPTALVAFCRGLVHYKLGDTIQVPKELMP
3152215..3152226                   attR                                                                                 N/A                 AGCAGTTCCAGC
3152472..3153665                   PHAGE_Pseudo_PS_1_NC_029066: integrase; PPUBIRD1_2799; phage(gi985757645)            1.25e-102           PseudomonasputidaBIRD1MAGKPMDLPPGIDVHYGSLRLRFMWEGTRRSETLPYPPTQKGIKAASQLRDKVNSLIKLNLLDHDKYAELFPSSAAVVGGVPTFGEYAQLWLDSREIAAGTRLNYKGTLNLYWVPHLALVRIDLITSTLLRRIVASITWTSPSVKRNAMVKLSTILRSAVLDGLITRNPAEAIQLPARSRKEVDPFTLDEANLIIAELYKHPHWPSQIYAAFFEFMFFTGLRLSEGLALRWDAVDTTKKTAHVRRTIALGVVEERTKTGRDRFVLLNDRALHALEFAKQYAERRRLGKGQFTESPFVFPPGKNGEHVKQTSDLHHQWRPILKGLGIRYRPPYNCRHTYATICLMSGLNPAFIAQQLGHSVQMLLSTYARWINSSNDWQELEKLQIGPKLVRSCEEAT
3157233..3157244                   attR                                                                                 N/A                 GGCCCGACCACT

#### region 2 ####
3583133..3583144                   attL                                                                                 N/A                 TTGAGCTGGATC
complement(3588048..3588521)       PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; PPUBIRD1_3198; phage(gi100025)     7.56e-23            PseudomonasputidaBIRD1MAKYSTHKGRKIDSIGRLIAIVPTPAPKRFTQQAVLVWAVPQQTKGIQRKVPQFKAPEPRENEEEGQWDWRNKAAAAAVERANKHARAVAEVKPGEMIVLAESNYDMTNWDSQGLTERTYQRWNRAIKGALESLVNEALAEAQHMLEAIGVLFDEAA
3588534..3588725                   PHAGE_Entero_186_NC_001317: Orf84; PPUBIRD1_3199; phage(gi9634095)                   9.69e-05            PseudomonasputidaBIRD1MSRAELTDPTVRPDDKVSATTHGIDRMVDWANTARGGRQFDMVDLIARTDSQNRCSSAYGLCE
3590232..3590525                   PHAGE_Pantoe_vB_PagM_PSKM_NC_048767: tail assembly protein; PPUBIRD1_3201; phage(gi100053)     1.92e-06            PseudomonasputidaBIRD1MTRLALCLLLLATGASAEQFTPNVEVIHDDKRAVTCWVYSGHYYKGGISWIPDSQLQAGNERQLSPHETQPEPTPALAPGRWTDERYQPSQGLAPVP
3590545..3590853                   PHAGE_Pseudo_ZC03_NC_048638: head morphogenesis protein; PPUBIRD1_3202; phage(gi100068)     5.38e-05            PseudomonasputidaBIRD1MPWRVFARYQGQAIEHTKRYNPWEDWALGGPLAVKYQVSLIPEAHEGPEGTEMSERWRASVYYKAGEHYGTDYCGTALIAACQAVVATEFGDTVQVPKELMP
3591568..3591975                   PHAGE_Pseudo_phiPSA1_NC_024365: integrase; PPUBIRD1_3204; phage(gi658307718)         7.45e-50            PseudomonasputidaBIRD1MARKTITGLYEKGGVWQIDKVYKGERIRESTGTGDREEAEQYLIHKLEQLRQRKVYGVRQVHTWEEAAMRYLLEVKDQPSIHLTALCMKQLHPYLGHLPLTHIDDQALEPFIRDRQTEKVLPDGTIENGRKQPDD
3592067..3592747                   PHAGE_Pseudo_phiPSA1_NC_024365: integrase; PPUBIRD1_3205; phage(gi658307718)         2.59e-121           PseudomonasputidaBIRD1MLRKLEEKKSSRKPYPMSWEEQSILFNELPGHLQTMALFKVNTGCREQEVCKLRWDWEISVPELGTSVLLIPAEFGGRHENSGVKNRDERLVVLNDVARSIIEKQRGLSREWVFPYNGTAMHRMNDSAWKKARVRAAKLWQEQHLRPAHPGFASIRIHDLKHTFGRRLKAAGVSEEDRKSLLGHKNGSVTSHYSGAEIGQLIEAANKVSATDSRGPVLTILKRRIG
complement(3592829..3592905)       tRNA                                                                                 N/A                 CGGGGCGTAGCGCAGCCCGGTAGCGCACTTGCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCA
complement(3593020..3593376)       Hypothetical protein, conserved; PPUBIRD1_3206                                       N/A                 PseudomonasputidaBIRD1MLEPSHNDELPPIPGKRYFTIGEVSELCAVKPHVLRYWEQEFDQLNPVKRRGNRRYYQRQDVLMIRQIRALLYDQGFTIGGARLRLSSDEVKDESSQYKQLIRQMIVELEDVLVVLKK
complement(3593357..3593635)       PHAGE_Bacill_SPbeta_NC_001884: histone-like prokaryotic DNA-binding protein family; PPUBIRD1_3207; phage(gi9630187)     5.95e-17            PseudomonasputidaBIRD1MAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKP
3600991..3601002                   attR                                                                                 N/A                 TTGAGCTGGATC
