gi|00000000|ref|CP002462.1|  Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete 58739, gc%: 37.62%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
6242..7489                         PHAGE_Clostr_c_st_NC_007581: putative IS transposase (OrfB); LSA_2p00120; phage(gi80159731)     4.94e-63            MKSMTEMKYHYGLKMRCYPGDQQKQLIKINSDASRFIYNEMVAINKELMQLRRVKLPIDIVQDRIKQLTMRQNAKQMSNHYQFLEDKRIDSLAKANAIQNYRKAWNAFRKVHATGIPKFHRKSYRWRYQTNCQYGQKTALLTNGTVCFLDNNHVKVPKLGLLRVAGSQARLLKRICETRIGTVTLTKDSADRFFLSMQLASDESFVKVSKTTHGHVGIDLNTDNFLTDSEGNIVPNPRYYRTIKGKLAKEQRILSRRQQRAKKEHRSLRDSKNYQKQRLLVAKLHAKVMNQRHNFLQQISTALIKNHDLVVAEELRSKNMLKNHALALSISDVGWRTFLDMLAYKATLYGRQFITISPRNTTQTCHDCGFVMGTNGTDKLTLNDRDWTCPNCGIHHIRDWNAAKNILDKGIAKLA
7660..8370                         PHAGE_Weisse_WCP30_NC_031101: hypothetical protein; LSA_2p00130; phage(gi100025)     3.22e-19            MTWLLGQVKGWSKILYLICIVNFIMQCAILIPALLNNTGIISIVAAIAGFMGANLSVLCVCSISARSALNGFTSISSALFIIIAACISHNWATVAEQLFFMFAMDFWVLLDPMWNKDIKAREFSKASEWFKYLGIFILAYIVIYFVFSYTNDPNLIPDSLVLSVSVVASLLEFNRYKEQYVFWLIGNVANCWVWVASWLSQGTATPALLVSYSLFFLNSLTGMYLWYKEARTLRNK
8503..8829                         hypothetical protein; LSA_2p00140                                                    N/A                 MIGIIFILIVVIASGAAYIVGSNSTRNHNEKQNKITRVTYNKKDNSSKKTLKIQLIQMKKRHIQANQQIRHKIHLMKTQHILQIITQKIHRNTKLNYKEKRTILTLPL
complement(9167..9310)             hypothetical protein; LSA_2p00150                                                    N/A                 MKYAVTGATGKFGQTVIKVLSILNTVIIICKLQVIMDARKALLLLAL
complement(9326..9451)             hypothetical protein; LSA_2p00160                                                    N/A                 MKIFMNNRILLKISPSSNFCKPLQSLVTSIKQDNLVVQIMI
9555..9896                         Protein crcB-like protein 1; LSA_2p00170                                             N/A                 MGGIARYEIGNWIHSANGLLGTSVVNLAGCFLLTFIIYSLDLRFDLPEWQILGLGTGFVGAFTTFSTFTVQYVQGISSNPLGSLIFLLVNLIGGMLCVLLGYLAVTAFGRRQR
9893..10249                        Protein crcB-like protein 1; LSA_2p00180                                             N/A                 MTTMIWVGLGAGLGATCRYGITVLGKLVSPTIPYATILINVIGSLLAGYLTGSQLPGTWALFLLTGVCGGFTTFSTFSVDTFVLVRNHRYLLAGWYWLGTVALGVLAVVCGLWLGMHS
10320..10754                       PHAGE_Lactob_phiAT3_NC_005893: putative transposase OrfB; LSA_2p00190; phage(gi48697274)     6.35e-102           MMDLHSRRIIGYSFSKKMATDLVLKTLESAVKNRTITGDLIIHTDLGSQYTNDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA
11074..11664                       PHAGE_Vibrio_PWH3a_P1_NC_020863: resolvase domain-containing protein; LSA_2p00200; phage(gi472342379)     4.58e-27            MEMAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLAYIREDDIVLVTELDRLGRNNQDLTKIMNTIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKRQGKYHGRKPQYTQDDPRLQHAFKLYQAGMSDIDVTRNTGIKRTTFIRYRKKFNIKR
complement(12005..12553)           PHAGE_Bacill_G_NC_023719: gp275; LSA_2p00220; phage(gi593777731)                     1.69e-37            MAKALLIIDYTNDFVADKGSLTVGKPAQTLAPEIMRLADQFLSQHDYVIFPTDGHRLNDPFNPETKLYPAHNIIGTTGQKLYGQVGSWFDQHHDDSHVYKFNKNRYSSFQNTNLDNYLRERRIDEVWIAGVCTDICVLHTAISAYNLDYHIVIPQAAVATFSPAGAEWAINHFKNVLGATIR
complement(12555..13994)           PHAGE_Bacill_G_NC_023719: gp277; LSA_2p00230; phage(gi593777733)                     2.26e-127           MNLQLLTDLYEFSMANGYYATLPHDRQARFDVFYRRVPDNGSFVIVAGLQQVVEQVQNWHFTKENIEYLTSLNEFTPEFLDYLSKIKNHCSIKALPEGTPVFPREPIISISGPLIEAQLLETFILNIINHQSLIATKSWQINHAAQGRPIMEFGARRAQGPDAATYGARAAVIGGCTSTSNLQAASQFNIPAAGTMAHAWVESFSDELSAFQAWAKVYPDKVSLLVDTYDVLKSGVPNAIRVFKQVSAQGHQPVGIRIDSGDILQLAIKARKMLDDAGFPKAKITASNALDAHVVKSLLDEGAPIDNFGIGERLITSSSSPVLSGVYKLAEEKINDQCIPKIKVSDSREKITLPGNKQVYRIYRQDNLHQAIADVIALADEHITSPLKVVNANSAATHASQVLTNFNAKPLMQEYLGSNASPIENDLFKIQQFSMDQVAELPEATKRLVNPDRYPVYLTATLAELQEQLITKAQFTEEH
complement(14110..14814)           PHAGE_Strept_YDN12_NC_028974: hydrolase; LSA_2p00240; phage(gi971762176)             5.25e-10            MDSEIIARPLVTITNIIWSFNTELHRPQLLLIKRADEPLKGHWALPETLLRSKESADAACIRLIDDKIGLQVPMNSTEQLATFTDPKRVTGTRALALAYMTYLPSTPKLHPGYGATDAQWFVLDKDQGNYVITHDQQEIILSPAGHLVFDHIQIITTAINRIKNKLDYQPQILRILGNTFTLRQAREVFAAFLGTTIDKIDNSNFKKTHNHLFKEVGVATLNHSGRPPKLYQLN
complement(15224..16153)           PHAGE_Staphy_phiPV83_NC_002486: transposase; LSA_2p00250; phage(gi9635740)           7.88e-58            MSSITYSERIKIETFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKSIYNWLNQGRIDFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQCPMMINQRKRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTPYQVMLTNLSKNSD

#### region 2 ####
50314..50631                       PHAGE_Rhodob_RcapMu_NC_016165: DNA-binding protein HU; LSA_2p00530; phage(gi356870859)     4.60e-10            MTVDFTQAQEIKKIAHQEDIPAVDVKRILDRYISDIRSSVKSNGKASINNLGTFRVRKHHAYIGRNPRTGEKVNVPAKMRIHFTASTIFKAEVNEEFNTETESNN
50762..50998                       PHAGE_Staphy_SPbeta_like_NC_029119: transposase mutator family; LSA_2p00540; phage(gi985761243)     7.47e-05            MNELTTEIIAALAQKQDLDEVFRHHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNGSYERSFDTKYDQLNLTIP
51029..51892                       PROPHAGE_Escher_CFT073: transposase; LSA_2p00550; phage(gi26246249)                  8.61e-53            MPAYGRHSDNLETTVIQLYTKGITTAEIAELIEKMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAVHIAIGIRPDGTKEVLNYQVAPTESTGIWTELLGTLIKQGVKDVLLFVADELVGLDEGLNRHFPKAKRQRCLVHVGRNLMNKVRVKDRKAVISDFKQVHRAANREAAELKLNEFANNWHQTYPKLIKDLLKMPSLLTFMDFPPAIRQSLYSTNLIENFNKHLKRTTHHKEQFPTEDSLDRFLVSQFNVYNEKSLKRIH
complement(52403..52972)           UPF0340 protein; LSA_2p00560                                                         N/A                 MNLSLETLNLQVKTSLKELLQTANLEKDDIFVLGCSTSEVQGKHIGKDSNITIGRTIVKTLLDVLEPLGINLAVQGCEHINRALVVERHVAKDNHLDIVTVFPTLHAGGAAQIAAFENFKDPVEVEHITAEAGMDIGDTSIGMHVKFVQIPVRTSINQIGEAHTTFLRSRPKLIGGQRAKYTWDPFGDL
complement(53516..54217)           PHAGE_Lactob_phiAT3_NC_005893: putative transposase OrfB; LSA_2p00570; phage(gi48697274)     6.90e-119           MFDYIHQESHHHQVTKMCRILGVSRAQYYRYRSPKPSKRRAGDVGLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQRRCSPRRISWLMKELDIHSVTVNKWKAASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLSTIMDLHSYSRKGCPYDNAPMESFHASLKKECVYPVPIFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEITTLTSQMAA
complement(54223..54474)           PHAGE_Lactob_phiAT3_NC_005893: putative transposase A; LSA_2p00580; phage(gi48697273)     2.77e-53            MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
54660..55334                       PHAGE_Clostr_vB_CpeS_CP51_NC_021325: putative resolvase; LSA_2p00590; phage(gi509140089)     2.62e-26            MEISVFMYDTIELSHKYFKKGVKKLKIGYARVSTTDQNLDRQIFALKKAGVQKIFEEKISGKNMERPKLKKMLEYIHDDDVVTVISLDRLGRNSRDLTDVIDKIRRRGAVLDVLDLPTFAGVEDGNLRALLTNLVLEIYKYTAEEERQKILKRQSQGIKIAKTKGIYKGRKKEYAPNGSKRFIYNGVLNGIKNGKSIAQISRETGIGRTQVYRIRDYAKSINEL
55723..55998                       PHAGE_Lactob_phiAT3_NC_005893: putative transposase A; LSA_2p00600; phage(gi48697273)     1.04e-08            MKNRSKRYSLEFKQNLVALFNDEKRSMSSISKEYGVTVSSISKWINDKKLVSVDDGKPITRKDFLKLKKEYEDLKEENEILKAAAMILGKK
56022..56810                       PHAGE_Lactob_phiAT3_NC_005893: putative transposase OrfB; LSA_2p00610; phage(gi48697274)     1.55e-37            MNRFLAENHRLTIILKALQVPRRTYYNWINYTPNYRKMLEEKVKPFLKEAWSKNCKAYGAPRLKVALQRELGINFSIRRITRLMKEFGIRSLMCRRFKKPGTHVDYDQRPNLIKNLSGKSIWRADITYLQLENGVWVYLSTVFDDQTYKILSQKVSKHMTSKLVSHTLIEALKKNKKPEYLHSDMGSQYTSSIFEHVLEGHEIRHSYSQKGHPYDNGPIEAFHSILKREFAFQTRFTSFEDVVLKTENYIHWYNTERIRIAV
complement(57055..57435)           hypothetical protein; LSA_2p00620                                                    N/A                 MSIDPILTTNKKSTLEEKKVKFTDGNDFTSPKFTSPDIELAEKKDSNTVKPAKRKSKKTQTQRLSVTTILKCRTLQPFMTELERADKASIDDIISTLADYYIKEGLPDRQKDVFQGMYDLNLKRLD
complement(57447..58340)           PHAGE_Entero_EF62phi_NC_017732: chromosome partitioning ATPase; LSA_2p00630; phage(gi384519759)     1.43e-46            MTETNKNLEYDQLYFGADETVSGVRDCTVYVVGNFKGGVGKTKTLTMLAYTSAVYKNRKTLVIDLDPQANASSILAKTGGIKIIDKNIYKGFIEGDLTSQVTPIMENLDLISSVTQFKNLPKLLMSKFPNNDEAQINYLNELLKPLKEKYDAIYIDVPPTISDFSDNAMMAADYCIIVLQTQELSLDGAQTYIDYMQYLINTYNKQLQVLGIVPCMLRPGGRVDDKILNDAKKSYGNNVLETIVKYQERLKVYDVEGIHLKKNISKTPDQWDLKAHTVFKNVLTELDQHQQAFEKVE
