gi|336447599|ref|CP002844.1|  Lactobacillus reuteri SD2112, complete genome. 2264399, gc%: 39.03%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
363868..363880                     attL                                                                                 N/A                 ATTCTTAAAAAAG
complement(363925..365055)         PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0538_20360; phage(gi588498272)     1.96e-29            LactobacillusreuteriSD2112MTHLNDTMSTSLLTTHKKNAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNRGTVRQLRRQKSNGKIYEYSYYIYSYEAGQATYLEHHRHSGRRRLYYSSKQFLRLADQLMLGEFDDHHYSPQAVIYKARDLMNDGTLIPKSVVTLYQWINEGVLRTSNLDLFEKPKRKHHRTHPQAKRCLGPNIAQRPQTADQRSEIGHWELDTVQGQKNGNDSVVLVMTDRLSRVNITSKIAGKTAHAVNQFFINLRQKMGTDAYYRIFKTITSDNGSEFSELTQVHDHVFYADPYSPWERGSNEINNRFLRKEITKGEAINNYSSAQIIATNDWMNHYPRAMFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI
365273..366742                     cell envelope-like function transcriptional attenuator common domain protein; HMPREF0538_20361     N/A                 LactobacillusreuteriSD2112MDNNNNNESREHYRKRMEERIQRDVNERKRREREEAHNRRENRLRREEEQSSPDYQPPKKHHYRTPNWVRTLIGLLICLVVAGGFYEYHKVHSVAKGVFGAGDGKISKKLQKGEPVSVLAMGTDVGALDRGNKGGNTDSLELFTINPKKKTITMTSIPRDILVRVETSDGPDYVKINAAYSINGPKQTVKQVSELLDVPIDYYAVINMGVLEKVVNSVGGVEVDNPFAFDYEGHHFKKGKQHLNGANALKYSRMRYDDPNNDYGRQKRQQQILKSVINKFKASGSIGAANKILDAVGDGVKTNIPIDDIATLYGNYHGAMNNVKTYHFQGQNATIEGVSFQIASPKEINRVSKLVRAQLGLKAKNIVNHETKMYKSQPHYNGYNETDFILPGGASYNDPGSGNGSDEVIGSSRSSRRSTNETESSSTYTAGNNESYSESRAVPTTGNQTPTAPIQHHYSTPQYHTYNGYHSTYTHPTYGNHYGYTHRYY
complement(366786..367904)         hypothetical protein; HMPREF0538_20362                                               N/A                 LactobacillusreuteriSD2112MSKQKFYHWLFWPLLLLTVATLIWMCTKIQFIFQPFLTFVSVVFVPLIISGFLYYMLNPVLKLFMKIKIGRFHMNRGIASLLIVLLLIVILVGGIAMLIPPVVKEISTLVRNMPQTVTGIQHLINDTIEHSFLQNVDLNAYYRQFDHQLAGYAQKVLQGLSTRVGDIIGMLTNVTVVTITVPVMLFYMLKDGSKLIPSIQKWLSPHHAKEVNDLLGKMNSTLSSYISGQMIECLFVGVFTSIGYVIIGQPLAIVLGIVAGLTNIIPYIGPYIGIAPALFVALTMAPNKIIWVIVVVIVVQQVDGNIVYPNIIGKTLQIHPLTIIMLLLAAGHIAGIGGMILCIPFYAVIKTVCEYFFDIYRIEHPVDKTKTE
complement(367976..370597)         PHAGE_Entero_EFDG1_NC_029009: putative N-acetylmuramoyl-L-alanine amidase; HMPREF0538_20363; phage(gi971765220)     9.24e-11            LactobacillusreuteriSD2112MEIKKHYKLYKDGKNWCAMALAVAAVSAGLVLGNTNVKADTPTDNVPVVKTTNPTTGDANAELASQEKAAQAKDNGNYGYLDSAQVVNNNDLHVSGWQATNQAAGKDNRYLVAYDSTTNTELGRTSVTESVARPDVAKAYPDVVNAKDSGYQATMNNLDWSKVKSVDDQIHIVSRYSDAANGEGNRVDNWSQPINLDKGNYAYLDNFGVKDNQLQVSGWNATNKALGKANHYVILYDHTAGHEITRVKVEPTVRPDVAKAYSQVINAKDSGFNTAFSLAGIDLNHELQIISRYSDAANGDGNYVSYWYAPQKFAPANTSNQGSLDSFNLSNGQLIVSGWHATDYSQVENNHYLILFDNTNKTQVKSIKVTNVARPDVAKAYPTVATAGQSGFNANFGTVNLISGHSYSLVSRYSTLDGGNGDNGQSKTTDYWFNPVTLDQQASYVDSFTKTDKGYNVKGWMVSDQSINKPNAYLILLNDGQEIARTKVELTDRPDVAKVYPSIYNSQKSGFNGEFKVDPTKANGNLKVIMQFAGDDANKDFSDQYSQNYPTNAGNFDNIHVTASQVNLSGWHASTQAGNKPYEWLIVLDNNGQELYRQEITDKGLGRNDVQNVYPYIEGANKSGFQVTMNIPTKMQGHLVRFVHRLTDDKDGNGNFIDLSSNPVLVNLEYNLNANGINRYILNNHINHATITVNHVIPSDTTDVYSETEDGKPNMVVVHETANPNDSIWGEINYEKAHYNNAFVHAFVDGDQIIEISPTDHEAWGAAYPANGRAVQFEQVEVYGANNFARELVNAAYYTAYKMNEYGMVPSLAQVNGTGTLWSHHNVTQYIANGKTDHTDPDGYWANRASRYFGTSYTMKDFFELVKYEYSHL
complement(370669..371508)         PHAGE_Entero_phi92_NC_023693: Phi92_gp064; HMPREF0538_20364; phage(gi726646997)      6.27e-41            LactobacillusreuteriSD2112MTKILITGANGQLGSELRNLLDKRGVAYDAFDSNQMDITDQAVVNEKISALKPEVIYHCAAYTAVDNAEDVAKDLNWQVNADGTRNVAEAAKSVGAKMVYISTDYVFDGTNEGEYEVDAPTNPRNEYGKAKLAGEKAIQETLVDYYIIRTSWVFGKYGKNFVYTMLRLAKDHDQLTVVNDQFGRPTWTRTLAEFMTYLVDHDQPFGTYQLSNENSCSWYEFATEILKDKDVEVAPVDSSAYPAKAYRPRHSVMSLKKAEDTGFEIVNWQTALNKFMEII
complement(371655..372695)         PHAGE_Entero_phi92_NC_023693: Phi92_gp067; HMPREF0538_20365; phage(gi726647000)      9.02e-85            LactobacillusreuteriSD2112METFKNIIVTGGAGFIGSNFVHYVVNHHPEVEHITVLDKLTYAGNPANLDGLPKDKVELVVGDICDKDLVDKLVSKADAVVHYAAESHNDNSLIDPTPFIQTNIVGTSVLINACRKYDVRYHHISTDEVYGDLPLREDLPGHGEGKGEKFTPESPYRPSSPYSSSKASSDLLVRAWIRSFGLRATISNCSNNYGPYQHIEKFIPRQITNILSGIRPKLYGSGKNVRDWIHTNDHSRAVWDILTKGKIGETYLIGADGEKNNKEVLEMILELMGQPKDAYDHVKDRPGHDLRYAIDATKLRTELGWEPEFTDFKTGLQHTIDWYTEHQDWWKDEKAAVEAKYAKNGQ
complement(372707..373288)         PHAGE_Entero_phi92_NC_023693: Phi92_gp065; HMPREF0538_20366; phage(gi726646998)      2.11e-47            LactobacillusreuteriSD2112MGKLNVQTTKLQDVKIITPAVFGDHRGFFEETYSDRDFKAAGIDFNFIQDNQSLSTHAGVLRGLHFQRGKAAQTKLIRVVTGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTDNVNFVYKCDNYYDAEADGGISFKTPELNIDWPIEFDKAITSEKDAAQPTLTEFEKDNPFVYGEI
complement(373302..374171)         PHAGE_Entero_phi92_NC_023693: Phi92_gp066; HMPREF0538_20367; phage(gi726646999)      3.73e-130           LactobacillusreuteriSD2112MKGIILAGGSGTRLYPITRGISKQLIPVYDKPMIYYPLSTLMLAGIRDILVISTPEYMPLFQDLLGDGSNLGLNFSYKVQEEPNGLAEAFILGEDFIGDDSVCLILGDNIYYGAGLSDLVQSAAKKTDGATVFGYHVNDPERFGVVDFDDQMHALSIEEKPAHPKSNYAVTGLYFYDNQVVDIAKNIKPSDRGELEITDVNKEYLRQDKLDVKLMGRGYAWLDTGTHDSMLEAANFIATIEKRQNLKVASLEEIAYRMGYINKEQLVELAQPLKKNDYGQYLLRLAQQD
complement(374318..376639)         PHAGE_Temper_phiNIH1.1_NC_003157: cell wall hydrolase; HMPREF0538_20368; phage(gi16271826)     9.18e-33            LactobacillusreuteriSD2112MASDSNLKNNQFRVVLPVIFTFGASLVFFQGNAHADDTNVTANTAVTTTQTSDNQQSSNYQNANVALMTAQAVQTHAAEQTANTDPNKGAVDISAENAQNVANAPAVDTQPNVSTNQISNTQADPENGTASTTVSGAGNINTNGLSARNVQFLESIHQGAVDGWKQFGVLPSLTGAQAIIESGWGQSALTTQGHNLFGIKGSYNGQSVTMPTYEYYGGRYVQINDAFRAYPSNYESIVDHGRFLKENSRYSNLIGQKDYQTVTRLIRQDGYATDPQYTNTLNRVIRQYNLTAWDQEAFNDNINTGHIDNVSVQGDNLKVEGWHATNNYDQSMHHFIILLDGNTKQELYRQEVPGTYRQDVQNVYPNAKISGWGGFSLTVPNSANFAGKAIQVVSRYTKNTNGEPNGGDDLWFNSVNLNTNAGYLDNFNIDAATNTLNINGWHATDQSAGKDHHFIILYDATKNRELGRYEVNSAIRNDVAKVYNVYNAGKSGFNLQVNISPALIGDNIQVISRYSNATNGEGNYVDYWFAPKTFNANQSYLDKIEISDNQVHVSGWQAADASVKQQNHFVILYDATTHREIARKQVSNVSRPDVQRAYPNIANAGKSGFDVTFDFNRAAYAGHQLQVISRYSDANNGEGNRTDAWFTPTTVPSNNQGFLDSFVVKNGEVTVTGWQATDQSYNQKNHFVILYDATTHREIARQQVTNLDRPDVQKAYPSIYNSAKSGFKAAFKLDSSLIGHEIQVVSRYSDANNGEGNRTDFWFNAIKLPQNLY
379148..379160                     attR                                                                                 N/A                 ATTCTTAAAAAAG

#### region 2 ####
424254..424265                     attL                                                                                 N/A                 CTTTAATTAAAA
complement(429066..430112)         PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0538_20421; phage(gi588498272)     2.05e-26            LactobacillusreuteriSD2112MIATLKSQGLSNRAIGRQLGVNHQTINNELNRGTVRQLRRQKSNGKIYEYSYYIYSYEAGQATYLEHHRHSGRRRLYYSSKQFLRLADQLMLGEFDDHHYSPQAVIYKARDLMNDGTLIPKSVVTLYQWINEGVLRTSNLDLFEKPKRKHHRTHPQAKRCLGPNIAQRPQTADQRSEIGHWELDTVQGQKNGNDSVVLVMTDRLSRVNITSKIAGKTAHAVNQFFINLRQKMGIDAYYRIFKTITSDNGSEFSELTQVHDHVFYADPYSPWERGSNEINNRFLRKEITKGEAINNYSSAQIIVTNDWMNHYPRAIFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI
430256..431674                     hypothetical protein; HMPREF0538_20422                                               N/A                 LactobacillusreuteriSD2112MCRILSKGRSFLMDILTEIEQNLVKSGSLFEAEQIILKGVLELGQVIMQNFLESLDRSLKSQAPANYQVINKQPRTLNFIFGPVTFQRRYYQAGTKKREFYLDQQLKIKPRRRLSPHYLMMMAKIAQTTTMRNTADILNLVFNSGITADSVMHAVHELGNQLAKQTQAKEHQATPRHMPKNLTIEGDAFMIKGKKEAGQLTLVHHYRVYERVANQIINRYDFLSVGHQGRLEARLSDYLDRHYKLAGQTIFLASDAGPGYEPAKLLSLVPQGAHGEYFLDRYHCLQKIEHTLGRHNELAMQAIKAVRHHDQAELTIILDTYESQNLTEKQADDLMRLRKYLQRNWRYILSPQMRGFKDIHLIGSVESSHRAFTYRMKKQGKSWTKQGAKAMIGLIEARMNGELQASLNTILEQLTVLPRVAQTSLLQEMHIRTGEFLRKAPTKPSIGAVQGIIPINTATSRPMGQLFKALTH
complement(432117..432689)         PHAGE_Bacill_G_NC_023719: gp275; HMPREF0538_20423; phage(gi593777731)                4.64e-40            LactobacillusreuteriSD2112MRHKNKELAMTKALLIIDYTNDFVADNGALTCGKPAQELEDYLVQLANRFYQNGDYVIFPTDAHCRDRFSPEAKLFPPHNVVGTPGQQLYGKVNDWFEQHQASDRVYQFNKNRYSSFQNTNLDNYLRERKIDNLWIAGVCTDICVLHTAIAAYNLNYQITIPVKGVTTFTKHGQEWALDHFKNSLGATLV
complement(432673..434103)         PHAGE_Bacill_G_NC_023719: gp277; HMPREF0538_20424; phage(gi593777733)                2.68e-121           LactobacillusreuteriSD2112MKHELLTDMYEFSMANGYYQTLPRDKQARFDVFYRKAPDDGSFVISAGLMQVIDEVKNWHFSTGDIAYLRSLNHFSDDFLFYLTSAHNRCSIKAIPEGTPVFPQEPILSISGPLIDVQLLETLILNIINHQSLIATKAWQITSVTGGRPVMEFGARRAQGPDAAIYGARAAIIGGCSSTSNVLAAKLFNLPAAGTMAHAWIESFPDELTAFRAWAKIYPDNAALLVDTYDVVNSGVPNAIKVFKELRAAGHEPVGIRIDSGDIAQLATKARKMMDEAGFTNAKITASNALDAHIVKSLLDEGAPLDNFGIGERLITSSSSPVLSVVYKMSALENDGKWVPKIKISNSREKITLPGNKQIYRLYDKHNPQHAVADVIALADEQIGTEIAAINADIHVTRNKVILTDFIAKPLLKQVLTLKKAAPIETDTFAIQHFAQTELAQLPAATKRLLNPDRFPVYLTKRLADLQQKLVDEAQK
complement(434207..434965)         PHAGE_Bacill_G_NC_023719: gp273; HMPREF0538_20425; phage(gi593777729)                1.54e-13            LactobacillusreuteriSD2112MILDCAIIFCEVKEMADKVVAHPLITIANIIWSFNPLTHLPQVLLVKRAYPPFEGHWALPETLLWRDESADAACIRLIKDKIGVRLSNSATEQLATFTDPDRVSRGRALAIAYMTFLPTMPQLRAGYGATEVGWFSLNFDHGKFILQNGDLVLSLAAGPALAFDHHQIINTAIVRIKNKLDYQPTILQILGPTFTLRQAREVYATFRQTTVDQIDNSNFKKTHQKLFKEVGTAATKRSGRPPKLFKLVLPCV
complement(435015..435509)         redoxin family protein; HMPREF0538_20426                                             N/A                 LactobacillusreuteriSD2112MEITINGEKRQLVGNPPAVGDEFPHFKVFDKNGDKVKTRQLLGKITLLSVVPDINTPVCSIQTQRFNSTMDQFPEVNFLTISTNTTEDQQKWCAAEGVKNMELVSDKEESFGYESKLLIPDEGILARSVWILDPDGKVVYRQIVTELTDEPDYEKAIAELKKLI
435766..436803                     PHAGE_Geobac_GBK2_NC_023612: minor capsid protein; HMPREF0538_20427; phage(gi589893767)     7.39e-44            LactobacillusreuteriSD2112MPINKEIDRRHKQAEIEAALNQPTSKALTNSPTAGKLPKSQDAYAQNFWQMMRGHAVVDALKEGTDPDGGFLVPDEFENQLIQKLQKANVLRTISHVIQTNSGEHKIPVVASEGTAAWLEEEAAYTESNTQFSQVSLGAHKLGTLIKVSEELLNDSAFDLMSYISDEFGRRLGNAEEQAFLTGNSTGQPTGILTDTNGASAGSTAAKADTLTFDDLIDLFYSLKAPYRQNAVFLMNDDTVKAIRKMKDKNDQYIWQPSVQAGQPDRILNCPVYTSPFMPTLAAANKPVLFGDFNYYWIADRQGRTFKRLNELYAVTGQVGFLGSQRVDGKVVLPEAIKTLSMAAK
436820..437098                     hypothetical protein; HMPREF0538_20428                                               N/A                 LactobacillusreuteriSD2112MAAITLAETKACLRVDNTVEDDLITKLIGSATATVENVLRQPLSAFGPLPDNIHTAILYTIAYLYEYRETADFDAMIKFLRAILAPYRKEEF
437099..437473                     PHAGE_Geobac_E2_NC_009552: putative head-tail adaptor; HMPREF0538_20429; phage(gi148747735)     7.14e-09            LactobacillusreuteriSD2112MQKQNNRVSKIADIGELNNRITLMKEKYVGENPNTGMSMYKNVKLGDVWAKVSSLHGQECHTAVTVKLEKQLSFIIRYRPDVDEDTNIWFEGRGYDIGFIDDVKYGHEFMELKAEYKRGITLED
437629..437874                     PHAGE_Bacill_phiCM3_NC_023599: holin; HMPREF0538_20430; phage(gi589892729)           1.08e-18            LactobacillusreuteriSD2112MKLAGFRGLTRKVLILVLVGIANVLDIYLLKNGSAIRTATIFFYISNEGISLLENASRLGLPVPDKLKSVLQQLHNKDNQQ
437888..438208                     hypothetical protein; HMPREF0538_20431                                               N/A                 LactobacillusreuteriSD2112MDCGLQAFFVAMVYFLALTGLSVEVITMTKQVKTVTHQPLMPIKTDTTQQQLLDELHYQQSRQVITKLLNKGLISENEFKQIDQLNQQSFPPLIEPENVDTSIIQS
438238..438708                     PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; HMPREF0538_20432; phage(gi77020163)     3.29e-13            LactobacillusreuteriSD2112MSTITKINSYQRDVKQLRVAAYCRVSTDNVEQLESLENQRQHYQEYINRHPNWQLVRVYFDEGISGTKLNHRNALKELLVDCHNQRIDLVITKSISRLSRNTTDCLKIVRELQQLNIPIYFEKERINTGEMASELFLSILSSIAQDESNSTAGNLR
439330..439638                     hypothetical protein; HMPREF0538_20433                                               N/A                 LactobacillusreuteriSD2112MMNKLIFSRKFLLSPLVQELKEHFNDPDGELGRLTNQIKANDQKAETLMNLVKEGLIDKGLYINQTAELEQSTHQCQQQIKQINSNNTDNANNLEDFRDLLR
439878..440465                     PHAGE_Geobac_E2_NC_009552: putative recombinase; HMPREF0538_20434; phage(gi148747753)     2.32e-15            LactobacillusreuteriSD2112MGKVRIIPAHQQRGNSINRSPDEPQSERLRVAAYCRVSTELDEQANSYETQISHYKALIQKDPSWEFAGIFADDGISGTNTKKRDQFNKMIRACKAGKIDLIVTKSISRFARNTIDCLKYIRDLKAINVAIFFEKENINTIDAKGEVLITIMASLAQQESESLSQNVKLGLQYRYQQGKVLINHNHLSLSRLHQG
443526..443537                     attR                                                                                 N/A                 CTTTAATTAAAA

#### region 3 ####
470431..470443                     attL                                                                                 N/A                 ATTAAGAAAGGAT
472069..472644                     PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; HMPREF0538_20473; phage(gi100017)     1.02e-70            LactobacillusreuteriSD2112MNLRRKNNMSQQTKVVTGINTRLSYANIWEPKSINGGKEKYSVSLIIPKSDQKTVTAIEKAIDASIQEGIGKFGGKKPNKATLKLPLRDGDVERDDAAYQDSYFINANSITAPQIVDKHVQPILDRDEVYSGCYARVSINFYAFNTNGNRGIACGLGNIQKIRDGEPLGGHASANDDFTAIDDSNDDDFLA
472700..474634                     PHAGE_Strept_315.6_NC_004589: putative DNA polymerase A domain; HMPREF0538_20474; phage(gi28876473)     0.0                 LactobacillusreuteriSD2112MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQIIEVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGLPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLANPNSPLQLKDWLQQQGIKTNSLSKASVAQLLQTTTGTVHQVLALRQLLSKSSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAPFNRSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKKD
474701..475105                     hypothetical protein; HMPREF0538_20475                                               N/A                 LactobacillusreuteriSD2112MKGSESMSEATIAITKLRQDKLNPHYRPMIFVIAPFTEVVKSDAKSTMTVRSYCRFIYQHGGIPVCPQLYLPQFINMHHSREFQVAAFINIVLLTKCAEAWSFGKPTHDMRYFIRLAKRKNKNIRYFNNEMEAN
475108..477363                     PHAGE_Lactob_A2_NC_004112: putative primase; HMPREF0538_20476; phage(gi22296557)     4.32e-52            LactobacillusreuteriSD2112MHFTLSTAANSGQASNTIYPHQQAITNAQELEQAVHYDHVCGQFKNNQRTIANFIKADCLIMDCDNDHSDDPTTWIKPANIANYFDDVSYAITLSRNNMKAKHHKAPRPKFHVYFPITEITDAKTYTELKHEIQEYFPYFDDNALDAARFVFGVPSTKAIWHEGSQTVDKFMMVQRYFAQQNVGAIPEGQRNATLSHFAGRIIMRLGNTDEARQAFQEEAAKCDPPLSKQELKNIWHSATKFGQRMASQEGYIPPEKYNQPNDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLADAQLRVTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKERSTRGINGILTNSRPKLVKEINDFDADPFLLNTPNGAFNLKKGMHGQQEIQADELITKSTSCVPGNQGASLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADALTTGVRRNVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIRSTTDFYTALKNAGFQRQHKQNGRFIKGLRLKVEADEFLS
477411..477857                     PHAGE_Strept_315.6_NC_004589: hypothetical protein; HMPREF0538_20477; phage(gi28876471)     3.94e-17            LactobacillusreuteriSD2112MFTNPNDSRDTLLHYLYIGIKIEKKSIEKSSKTTVTTVINPDESPIYQRLGRILQMLEKQIETAFVKATHQRGGLCLKFISPSMAGVPDRLVLLPDGHMGFVEMKAPGKRPRPLQVQRLSQLKQLGYQVFVCDQFGQIGGMLDAIQTA
477838..479193                     PHAGE_Strept_315.6_NC_004589: putative helicase; HMPREF0538_20478; phage(gi28876470)     3.02e-151           LactobacillusreuteriSD2112MQYKPHEYQQYATRFILDHPVAAILLDMGLGKSVITLTAIKQLIQQGKVQRVLVVAPLRVAKQTWPEEIEKWDHLKGLNYSVVTGSKLQRIKALQQDVDIYIINRENLKWLIESSGNSFDYDMLVIDELSSFKSYRSQRFKALKRVRPLIKRVVGLTGTPSSNGLMDLWAEFRVLDMGQRLGRFISSYRMNYFDPDKRNMYQVFTYKPKPGAEQSIYRAIDDITISMKSKDYLSLPPLTMNTVPVKMSNSEQAIYDELNAQLVVSAQGKQIDALNAASLSNKLCQMANGCVYDDQQQIIQIHQRKLDALEDLVEAANGKPVLVAYWFKHDLIQIKSRFKVREIKTPRDIQDWNAGKIPLALIHPASAGHGLNLQAGGATLIWYGLTWSLELYQQTNARLWRQGQRQPVVIHHIITEGTIDENILAALKRKDKTQLALINAVKANLKGSVMA
479190..479657                     hypothetical protein; HMPREF0538_20479                                               N/A                 LactobacillusreuteriSD2112MSIMWNYLDKRRATVAALKDYDGMKFIIDSYQDDLKLAKEQMIGVSSPRYGFVPGSSKKDNPTEHRLLHGIDETTKLNERYQQAQLYFKWFEPAWQELSEDERFVLDVCYRTPNQSMNEGLTIVMDKYFIAKTTAYNRKNKALDHLTLLLYGSHH
479806..480183                     PHAGE_Burkho_phiE125_NC_003309: putative class I holin; HMPREF0538_20480; phage(gi17975232)     7.47e-19            LactobacillusreuteriSD2112MPYSPKKPCRYPGCPRLTHNTYCDVHAKQVSSHYNRYQRPKRSRPRYHRGWPKIRQRYLLHHPFCEMCLSQGRYTQATEVHHVLPLEHGGTNEFKNLMALCKPCHSRITAQMDDRWHKKPRRYHY
480303..480845                     hypothetical protein; HMPREF0538_20481                                               N/A                 LactobacillusreuteriSD2112MAKDGTNRGGARVGAGRKSKSLHDKLEAGQEATVIDLPEPANLEGHVMPPVKKYLKAKQKNGLEFDAADIFKETWEWLVERGCEKLVNTQLIEQYAVSVSRWIQCEECISKFGFLARHPTTGNAIASPYVSMSRDYMKQSSQLWFQIFQVVKENNATTYQGSTPQDDVMERLLRSRKGMN
480845..482071                     PHAGE_Lactob_Lj771_NC_010179: putative adenine methyltransferase; HMPREF0538_20482; phage(gi163932178)     4.77e-76            LactobacillusreuteriSD2112MKFVKKKITDLIPADYNPRKDLKPGDPDYEKLKRSMHEFGYVDPIIWNQQTGHVVGGHQRLKILQDEGIQEAECVVVSLDDEKEKTLNIALNKISGDWDKDKLALLMTDLQASDLDVSLTGFDENEISDLLGTADDTHDDDFDVDSELNKPTFSKAGDLWHLGKHTLLCGDATKKESFHKLLSDNKVNLVLTDPPYNVDYQSKAGKIKNDHQDNDKFYKFLLAAFQNMNTAMANDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLVLGRSPYQWQHEPVLYGWKHDGKHEWYTGRKESTIWEFDRPKQSKEHPTMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPKYCDVIVNRYIKQVDSDQDISVERDGHIIPYSNLKKPA
482144..482764                     hypothetical protein; HMPREF0538_20483                                               N/A                 LactobacillusreuteriSD2112MEINFNVHGQQRKKLVEQIANYTQQKAEYQYTPTYAYQIGKYTVSKDGNLSSPDEIPSNLTDKLKELGFRPANIIKLHLAYRRDDFTDQALENLRHLIWAKGQLIKDACQLDSLKLDVDDQQVTFNWFNKVKLDDATAYQQFIDKLVQYAKDHQRIVSEPHEESNEKYAFRCFLLRLGFIGPEYKTQRKVLLRNLAGSAAFKNQEA
482767..482973                     hypothetical protein; HMPREF0538_20484                                               N/A                 LactobacillusreuteriSD2112MSRIKDELARRDRIRQQVLQIRNTGEVNMFDIENVKRLAYYYNCHDLIDYLTTERAGYVNLILTGKFN
483104..484072                     PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0538_20485; phage(gi588498272)     1.90e-35            LactobacillusreuteriSD2112MTYKHLTTRELTLIANFWHQGTKAYQAAKLLKRSQETIYRVYRFLDSGKTIAQYLKAYQRNKQRCGRKQAQLAKDEISYINEQVKAGWTPDTIIGRAERTISCSMRTLYRMFARGQYNFAVQQLPMKGKRHPNGYVERRGKAGHLGRSIYQRYHDFPHYQHEFGHFEADTVQGKAHRGAVMTLVERQSKVMIVLNVHRKTDEAVNYHLDKWLSKMPRHFVKSITFDNGKEFAGWREIANKHDLHTYFAEVGAPNQRGLNENNNGILRRDGLSKRLDFRNLPDELITQLMHKRNTIPRKSLHYRTPLEVFLSHVTDEQLSTFF
484096..485715                     PHAGE_Gordon_Nymphadora_NC_031061: hypothetical protein; HMPREF0538_20486; phage(gi100002)     1.73e-106           LactobacillusreuteriSD2112MKRSDVFLRKLKDYKPTRFMAKDSTYSKDAADFAVSFIECLCHTKGTWAGKPFDLIDWQEKIIRDIFGILKPDGYRQFNTAYVEIPKKQGKSELAAAVALLLCCADGEERAEVYGCAADRQQAAIVFDVAADMVRMNPALKKRCKILASQKRLIYEPTNSFYQVLSADAYSKHGFNVSGVIFDELHTQPNRKLYDVMTKGSGDARTQPLYFLITTAGNDENSICYQVHQKAIDIMKGRKHDPRFYPVIYGAGRDEDWSSPEVWKKANPSLGITVKMEKVKDAYNSAKENPAEENTFRQLRLNQWVKQDVRWMPMDKWDACAFPVDPNELRGRDCYGGLDLSSTTDITAFVLVFPPRDDSEGYTLLPYFWIPEDNVDLRVRRDHVPYDIWKQQGYLQTTEGNVVHYGFIEHFIDDLGKKYHIREIAFDRWGAVEMVQNLEGMGFTVVPFGQGFKDMTPPTKELMRLTLEKKIAHGGHPVLRWMMDNIYIRTDPAGNIKPDKAKSTEKIDGVVATIMGLDRAIRNEDNGDSVYDGRGLLML
485744..487009                     PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; HMPREF0538_20487; phage(gi46402090)     1.47e-86            LactobacillusreuteriSD2112MGLFNKLFHTNKASPKNTLSSTMSFFFGSSMAGQNVTERTAMQNTAVYACVRVLAEGLAELPLHIYQYTSDGGKQRAINHPLYFLLHDAPNPEMTSFIFRETMMNHLLLWGNAYAQIIRNGQGKITGLYPLMPDRMDVNRAANGEIYYTYTRNYDDYQAKNKSKQVILLSDEVLHIAGLGFDGLIGYSPIAMAKNAIGLSMAAEQYGATFFKNDATPGGVLEHPNVVKDPERLRKSWQSQFSGSNNHSIAVLEEGMTFHQLSIPPDQAQFLDTRKFQLDEIARIFRVPPHMVGDLDRSTFSNIEQQSLEFVKYTLNPWCIRWEQAMNQQLLSADDQRKFFVKFNVDGLLRGDYESRMNGYAIGRQNGWLSANDIRELEDLNRIPADEGGDQYLVNGNMLPLNQAGNFYNTQTTKESEEPKE
487006..487677                     PHAGE_Geobac_E2_NC_009552: putative Clp peptidase; HMPREF0538_20488; phage(gi148747731)     1.56e-41            LactobacillusreuteriSD2112MKRFWNWKQNGDQRQLAISGVIAPDSWVHDDVSPQVFQDELNESQDPIDLWLNSPGGDCTAASQIYTMLMNYPNEVNVKISGIAASAASVIAMAGTTVSMAPAAMLMIHNPLTIVGGQERDLDHAAQMLAETKESIINAYELKTNLPREKISTMMDNETWMNVNKAIELGFADAMLGDNKNVTDCYSYSDKQSDLVLLNKLKPKAKSTISVKSLQKRLSLLSH
487696..488874                     PHAGE_Azospi_Cd_NC_010355: Phage major capsid protein; HMPREF0538_20489; phage(gi168495136)     3.90e-42            LactobacillusreuteriSD2112MNKITELQEKRARIWKQAKYFLDTKQKEADVLSAEDNATYEKMEQDVVNLGKEIDRLHKQAQIEAELNQPTTKALTNTPTAGELPKGQDAYAQNFWQMMRGHAVVDALKEGTDPDGGFLVPNEFENQLIQKLQEANVLRTISHVIQTNSGEHKIPVVASEGTAAWLEEEAAYTESNTQFSQVSLSAHKLGTLIKVSEELLNDSAFDLMSYLSDEFGRRLGNAEEQAFLTGTGTGQPTGILTDTNGASAGSTAAKADTLTFDDLIELFYSLRAPYRQNAVFLMNDDTVKTIRKMKDNNGQYIWQPSVQAGQPDRILNCPVYTSPFMPSMAASNKPVLFGDFNYYWIADRQGRTFKRLNELYAVTGQVGFLGSQRVDGKVILPEAIKTLAMAAK
488891..489169                     putative phage DNA packaging protein; HMPREF0538_20490                               N/A                 LactobacillusreuteriSD2112MAAITLAEAKAYLRVDNTVEDDLITKLIGSATATVENVLRQPLSAFDPLPDDIHTAILYTVAYLYEYRETADFDAMIKFLRAILSPYRKEEF
489169..489552                     PHAGE_Clostr_phiCT19406C_NC_029006: head-tail adaptor protein; HMPREF0538_20491; phage(gi971821549)     1.15e-13            LactobacillusreuteriSD2112MQQQNKRVSKIADIGELDRRITLMKKKYVGENPNTGMSMYKDVRLGDVWAKVSALHGQEYYTAVTVKLEKQLSFIIRYRDDVDEETNIWFEGRGYNIGFIDDVKYNHEYLEIKAEYSRGVDDPNEDN
489539..489952                     PHAGE_Bacill_WBeta_NC_007734: phage holin; HMPREF0538_20492; phage(gi85701395)       4.90e-31            LactobacillusreuteriSD2112MKTTSLTVINSCFGAIGAFLGWFLGGLDGFLYVLLIFMVVDYITGVLCAINEHKLSSEIGFRGLTRKVLILLLVGIAHCLDIYLLKNGSAIRTATIFFYISNEGISLLENTSRLGLPVPDKLKSVLQQLHDKDGDHQ
489949..490098                     hypothetical protein; HMPREF0538_20493                                               N/A                 LactobacillusreuteriSD2112MISGIDVSEWQGHVDFNAVKASGVKFVLIRAGYGRSASQEDRYFAEHYT
490120..490239                     hypothetical protein; HMPREF0538_20494                                               N/A                 LactobacillusreuteriSD2112MGAYWYSYAVSPADAANEARACLTVLGNRHFDFPIYFDL
490306..490827                     PHAGE_Strept_Scap1_NC_042042: DNA topoisomerase medium subunit; HMPREF0538_20495; phage(gi100004)     1.56e-23            LactobacillusreuteriSD2112MEQNGCYAGLYISRSPLQNYISPSVAQRYAVWVAEYGPCCNYNGNYGIWQHSSTGSVPGVNGNCDLDYAYIDYAAVINKKQPITRKNPDELAAEVLDGQWGNGTDRQQRLTAAGYDYAVVQEKVNRLLNRKSVDQIAREVIRGSWGNGNERINRLKQAGYDPTQIQKRVNQLL
491094..491327                     hypothetical protein; HMPREF0538_20496                                               N/A                 LactobacillusreuteriSD2112MIKKVQTVTHQPLQSIKNNISSEQLLNDLHYQQSKQIIQVLLNKGLISTTEFKEIDDLNKQSFPPLLGPGSVDTSRF
491363..493024                     PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; HMPREF0538_20497; phage(gi77020163)     6.99e-34            LactobacillusreuteriSD2112MSTITKIQGYQHDVKQLRVAAYCRVSTDNFEQLESLENQRAHYQKYINNHPNWELAKIYYDEGISGTKMTKRNALKELLTDCHNHRIDLVVTKSISRLSRNTTDCLQIVRELQQLNIPIIFEKEHINTGAMASELFLSILSSIAQDESHSTAGNLRWAIRKRFASGKFHVSSAPYGYSIEDGNLVINHTEAKTVRQIFQRFLSGTSASQIAKELNQKQVSTKRGGQWRSNTVINILRNGNYTGDMLCQKTYRDDQYHRHFNQGELAQYLIEDHHPSLINHENFNRVQVLLKEAVKKRHIETGSHKYQQHYLFSGKIICGQCGTIFKRQTRPHKIYWACQQHLRSAQQCPTKAVSEASLKAAFCNMINKLVYSKKFLLQPLLEGLKEEANVNSDGQLISLTKQIKANDHKAETLTELMHAGLLDKAIYVNQTARLEQDTYQCQEKIKQLNGQNTDSANDFEDVRTLLRWCHQGKQLTEFDEGVFQEFVQQIVVNSSNKATFILKCGLKLPEKLNKNATIDGHFYRDIIKQRYNDPIKQAEYLYSIIESEGDLIG
493017..494594                     PHAGE_Lactob_phiPYB5_NC_027982: putative integrase; HMPREF0538_20498; phage(gi937456185)     9.36e-28            LactobacillusreuteriSD2112MGKVRIIPAHQQKGNSVQPQKNRLPFEQLRVAAYCRVSTDYDEQASSYETQVIHYKELIQKEPTWKFAGIYADDGISGTNTKKREQFNQMIAACKAGKIDLIVTKSISRFARNTIDCLKYIRDLKAINVAIFFEKENINTMDAKGEVLITIMASLAQQESESLSQNVKMGIQYRYQQGKVFVNHNHFLGYTKDAQGNLVIEPAEAKVIKRIFYSYLNGMSMKQIADSLKADGILTGGKTKNWRSSSVAKILKNEKYMGDALLQKTYTVDFLNKKRVKNEGIMPQYYVENDHPAIIPKSVFMQVQQLIKQRRNGITTKNGKHRRLNGKYCFSQIVFCGKCGDIFQRNMWYRPEKVAVWRCASRVRRSKTGRRCMIRNVKEPLLKEATVEAFNQLIEGHELASKQIKANIMQVIKDSQGPTLDQLDKQLEEVQMKLIQAANQHQDCNALTQQIMDLRKQKEKVQSRETNQQVKLHSLEEINELVEFHKYGLVDFDEGLVRRLIEKITIYQRYMEFTFKDGEVIRINM
494764..495615                     PHAGE_Bacill_G_NC_023719: gp245; HMPREF0538_20499; phage(gi593777701)                3.54e-20            LactobacillusreuteriSD2112MLIEATNLTKKYGSKLALNNVSIQIKRGQLIAYIGTNGAGKSTTINMLTGLLKPTSGIISRNQGMKIGIVFQNSILDKELSVKDNLYYRSKLYHEDHSEWLQKLIHIMGLTNFLNQRYGTLSGGQRRRVDIARALITKPDILFLDEPTTGLDLQTRLVIWNLLQKMQSEYGLTIFLTTHYLEEAENADQMYILENGKILASGSATEIKKRYAPTKLVVTTNGNQLRTDYPSEQLTAQKLSFDNLTFSEVIELLHHNQDYITNFSYSPGSINDAFVKITGKELQ
495578..496468                     ABC-2 type transporter; HMPREF0538_20500                                             N/A                 LactobacillusreuteriSD2112MLLSKLPERSFNKMFALIRRNLKIYFANKIGVLMSCLGALISFFIYIGFLQENLTSSYQSLPHAKEMLDLWMISGIVAIAGITTSFQSLGQLVKDRESRTWDDLSLTDLTPFKINLSYLVSSIFISTLMQIITFFIMAIYFISVDNITIPDFAILPGLVFIVLGSFGASTINLIIIDLIHSSTTFSRLSAIVGAAAGFMIATYMPYGTLSKSAQFIVKLFPSSYEAASLRSFLLNKLSKKTLPAVGRQQMIEYLGIHFKIYGYQLSNYNNALMILGMSLILLGLAAVLTNLYQRKN
496471..496923                     LytTr DNA-binding domain protein; HMPREF0538_20501                                   N/A                 LactobacillusreuteriSD2112MQIHFQSDPSLDPDDLNITVNAVTKNNRVVNLLNYLDKYNQKSSMFIPIKTEDRILTIKQAELIKVEVTKNTLTFYTKSDEIQANGRLYQVLERLNENFVQVSKHCIINLNHLVSLEAGFTGNMVAKLNFKQRADVSRKYLPEIERRLGL
496925..497311                     hypothetical protein; HMPREF0538_20502                                               N/A                 LactobacillusreuteriSD2112MKNFRKSIRYFIRGMGYGSITYLVIATFFTSNMIVSKTSVITVFIFSGLIGELSFLFQTELSYSVALVIHLIGTFILYSGMMLINHWLFDWRTILIFVIVYIIIWLIIRLVEKQHINRINQQIMNRRK
complement(497439..497561)         hypothetical protein; HMPREF0538_20503                                               N/A                 LactobacillusreuteriSD2112MSYFDSRVDEGPVWQVVSIRVVEVRVKADMKAYTADTKID
complement(497928..498164)         hypothetical protein; HMPREF0538_20504                                               N/A                 LactobacillusreuteriSD2112MEDKFHKVDDGTTLWSEDGRYYYDNDCYLNVRLIRDGNYLRDKDNNKVYEIVEDQFIYLREDNFKHIEGRPYIWYKEK
complement(498189..501305)         PHAGE_Lactoc_P087_NC_012663: putative helicase; HMPREF0538_20505; phage(gi229604971)     3.49e-06            LactobacillusreuteriSD2112MSKGYLLESDVENLALDTLQKVGYDVYKSPSTTSPNPEIDKMRNNDHAVAVLTEKLQASLKKLNPGYPEEIYKEALRQLTRLADNPDMMVNNHYFHKLLIEGIRVKTTVNGENRTEVLYPIDFDHVGNNQFVATNQFTFKGSHERRPDTTIFINGLPVVTFEFKDASNPNVSIENAYRQLQTYKAEIPEYLKYNEILIASDGINSRAGSLTAGFDRFMRWRAPKNINVGDDLELETMIKYMLTPKDLLNLIENFIIFETDGDNTIKILAAYHQYYMVNKAVKAAKRTMADPNDKRIGVVWHTTGSGKSLSMVFFASIVARKLNNPTMLVINDRNDLDDQLFDTFAAAHEFLRQAPEHAESRDELRKFMDKQAGEIIFSTIQKFSPDFESGETEMPVLTNRSDVIVIADEAHRTQYGLKAKFTNNGLRYGFAKYLRDALPNASFIGFTGTPISTADKSTVAVFGNYIDVYDITQAVNDHATVKIYYESHVFPLKLKSDAQAKYQQLLKEANLDDDPNLEENTRRNREFSSLEALAGAQPRLESIAKHFVNHFEARQKETFGKAMIVEMSRRNAVRLYNQIIKLRPEWDSDDLNKGKIKVVMTSSAADGPEMAKFQTSKADRRVLQKRMKDNNDELQIVIVVDMWLTGFDVPSMNTMYIDKPMKGHNLIQAIARVNRVFKDKDSALIVDYIGIAENLKEALNVYSTEDQGQVGINMQKALALLKEKYDIITNDFLYGVDYSGFDSEDGAVRLKITRRVANEILGEDEETQQKFLDVVTELQKAYALTSTQPEAQAYGKEIAFFKTVKVFIQKLKQPTTPVGSGKHTDVKYQMQQLLDQSIISEPNVDIYNELGIKRQSIDLISDEFLQKVNSMPEQDVAITLLEKLLKGKIKAMMKSNKVTSEKFEDMLQKSIDEYNQRGITSEIVIRKLIDMAKKINAEQEKGKDLGLSQEEIAFYDALADHKKAVEVLGEKKLHLIAQELVKLVKEEAGVDWEKRRNIQAKMRVAVKHLLRKYGYPPDIAPEAVNTVVEQAELMATND
501340..501354                     attL                                                                                 N/A                 CTAAATGCTAATTTA
complement(501360..502517)         type I restriction modification DNA specificity domain protein; HMPREF0538_20506     N/A                 LactobacillusreuteriSD2112MTKYRLGDVLTIIMDYRGKTPKKLGLDWTEDKNDIVALSAKNLKNGELINLDKSHYGNSALYNKWMKDGDISVGDILMTSEAPLGELFLVDKPIKAILSQRIFLLRPNNSIVLPWYLYFYMSSKNFQNRLNGHATGTTVIGIKQKELRNIEIELPSLSIQKSIVRKLVPISKKIEINKEINANLLELITLIWSRYSQNISNKVPLKKIAKDIVTGKTPSTKIKANYGSDIPFVKIPDMHNKVFIDETLQSLSLLGADSQKNKYLPANSIMVSCIGTPGLVSLTGSIAQTNQQINSLVLDEKFIYWVFLELRSLSNKIGNLGSGGTTIKNLNKSDFSKLEVVVPDNDILLDKFNSIAKPIFESIHTNSFETNKLNQLKKRLLHKFF
complement(502514..503482)         PHAGE_Bacill_Mgbh1_NC_041879: hypothetical protein; HMPREF0538_20507; phage(gi100037)     1.16e-20            LactobacillusreuteriSD2112MNSIIDEIVQEMLKVLDNSQLIQLKRVLKKKLGNNTDSGPKKSNESYITDYLAAKQVEGCSEKTINYYQATLKMMFSYLGKHVQKITTEDLRDYLGNYQQSRNSSRVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRDHCNSERDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQNYLAKRKDANSALFVSLHVPHQRMSINGIENRLKNLGKRAGIAKVYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSNVKMAHRRFIG
503535..503549                     attR                                                                                 N/A                 CTAAATGCTAATTTA
515692..515704                     attR                                                                                 N/A                 ATTAAGAAAGGAT

#### region 4 ####
513061..513636                     PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; HMPREF0538_20518; phage(gi100017)     4.05e-73            LactobacillusreuteriSD2112MNLRRNNNMSQQAKVVTGINTRLSYANVWEPKSINGGKEKYSVSLIIPKSDKKTITAIEKAIDAAIQEGIGKFGGKKPNKATLKLPLRDGDVERDDEAYQNSYFINANSITAPQIVDKHVQPILDRTEVYSGCYARVSINFYAFNTNGNRGIACGLGNIQKIRDGEPLGGHASASDDFTAIDDNSDDDFLS
513692..515626                     PHAGE_Strept_315.6_NC_004589: putative DNA polymerase A domain; HMPREF0538_20519; phage(gi28876473)     0.0                 LactobacillusreuteriSD2112MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQIIQALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGLPRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLANPNSPLQLKNWLHQQGVETDSLAKASVAQLLQTTTGTVHQVLALRQLLSKSSVKKYQAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTALAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTDRSLDTIVKIMTEVPDWADGLILNAAGFVGGFYKKD
515713..516099                     hypothetical protein; HMPREF0538_20520                                               N/A                 LactobacillusreuteriSD2112MSEATLAIAKLRTNKPNPNYRPLIFVVAPFTEVVKKDPVIVHKVQSYCRFVYQHGGIPICPQLYLPQFINLHHSQEFQVATFINIVLLTKCAEAWSFGKPTHDMCYFIRFAKRKNKNIRYFNNEMEAN
516102..518357                     PHAGE_Lactob_A2_NC_004112: putative primase; HMPREF0538_20521; phage(gi22296557)     1.07e-52            LactobacillusreuteriSD2112MHFTLSMAGNSGQASNTIYPHQQTITNAQELEQAAHYDHVCGQFTNNQRAIANFIKADCLIMDCDNDHSDDPTTWIKPANIANYFDDVSYAITFSRNNMKAKHHKTPRPKFHVYFPITEITDAKTYAELKHEIQEYFPYFDDNALDAARFVFGVPSTKAIWHEGSQAVDKFMMAQRYFAQQNIGSIHEGKRNATLSHFAGRIIMRLGNTAEARQAFQEEAAKCDPPLSKQELKNIWHSATKFGQRMANQKDYIPPEKYNQPNDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLTDAQLRVTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKERSTRGINGILTNSRPKLVKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCIPGNQGASLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADALTTGVRRNVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNEKCELNPEYEQKSGDLYQKYREYCQGIGEYIRSTTDFYTALKNAGFQRQHKQNGRFIEGLRLKVDADEFLS
518405..518851                     PHAGE_Strept_315.6_NC_004589: hypothetical protein; HMPREF0538_20522; phage(gi28876471)     1.97e-17            LactobacillusreuteriSD2112MFTNPNDSRDTLLHYLYIGIKIEKKSIEKSSKTTVTTVINPDESPIYQRLGRILQMLEKQIETTFVKATHQRGGLCLKFTSPSMAGVPDRLVLLPDGHMGFVEMKAPGKHPRPLQVQRLNQLKQLGYQVFVCDQFDQIGGMLDAIQTA
518832..520187                     PHAGE_Strept_315.6_NC_004589: putative helicase; HMPREF0538_20523; phage(gi28876470)     5.67e-152           LactobacillusreuteriSD2112MQYKPHEYQQYATQFILNHPVAAILLDMGLGKSVITLTAIKQLIQQGKVQRVLVVAPLRVAKQTWPEEIEKWDHLKGLNYSVVTGSKFQRIKALQQDVDIYIINRENLKWLIESSGTSFDYDMLVIDELSSFKSYRSQRFKALKRVRPLIKRVVGLTGTPSSNGLMDLWAEFRVLDMGQRLGRFISSYRMNYFDPDKRNMYQVFTYKPKPGAEQSIYRAIDDITISMKSKDYLNLPPLTMNTVPVKMSNSEQAIYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVYDDQQQIVQIHQRKLDALEDLVEAANGKPVLVAYWFKHDLIQIKSRFKVREIKTPRDIQDWNAGKIPLALIHPASAGHGLNLQAGGATLIWYGLTWSLELYQQTNARLWRQGQRQPVVIHHIITEGTIDENILAALKRKDKTQLALINAVKANLKGSVVA
520184..520651                     hypothetical protein; HMPREF0538_20524                                               N/A                 LactobacillusreuteriSD2112MSIMWNYLDKRRATVAALKDYDGMKFIIDSYQDELKLAKEQMVGVSSPRYGFSPSGSKKDNPTEHRLLHGIDQTTKLNERYQQAQLYFKWFEPAWQELSDDERFVLDVCYRTPNQSMNEGLTIMMDKYFIAKTTAYNRKNKSLDHLTLLLYGSHH
520799..521176                     PHAGE_Burkho_phiE125_NC_003309: putative class I holin; HMPREF0538_20525; phage(gi17975232)     6.87e-19            LactobacillusreuteriSD2112MPYSPKKPCRYPGCPRLTHNTYCDAHAKQVSSHYNRYQRPKRSRPRYHRGWPKIRQRYLLHHPFCEMCLSQGRYTKATEVHHVLPLEHGGTNEFKNLMALCKPCHSRITAQMDDRWHKAPRQYHY
521299..521841                     hypothetical protein; HMPREF0538_20526                                               N/A                 LactobacillusreuteriSD2112MAKDGTNRGGARVGAGRKPKSLHDKLADGQEANVIDLPEPANLEGHVMPPVKKYLKAEQKSGLEFDAADIFKETWQWLVERGCERLVNSQLIEQYAVSVSRWIQCEECISKFGFLARHPTTGNAIASPYVAMSRDYMKQSSQLWFQIFQVVKENNAVAYQGTTPQDDVMERLLRTRKGKY
521841..523070                     PHAGE_Strept_EJ_1_NC_005294: transferase; HMPREF0538_20527; phage(gi39653711)        1.08e-78            LactobacillusreuteriSD2112MQIIKQKINKLIPADYNPRKDLKPGDPEFEKLKRSIHEFGYVDPIIWNKQTGHVIGGHQRLKILQDEGLTEVDCVVVDFDEAKEKALNVALNKISGAWDQAKLGLLISDLEASAFDVSLTGFDESEIADLLETDSNTKDDNFDVDAELKQPTFSQAGDIWHLGRHTLFCGDATKAESYQKLLGKTQVNLVLTDPPYNVDYQSKAGKIKNDHQASDKFYQFLLDAFQNMNQAMADDASIYVFHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLVLGRSPYQWQHEPVLYGWKKTGKHEWYTGRKESTIWEFDKPKKSKEHPTMKPIPLLAYPIMNSTMTNCTVLDPFGGSGSTLIACEQTKRTCFMMELDEKYCDVIIKRYIEQVGSVQDVSVERYGKTIPYSEVVKRDK
523144..523776                     hypothetical protein; HMPREF0538_20528                                               N/A                 LactobacillusreuteriSD2112MIINFGVTGKNRKQLVTAIANFTNCKAEYQYTPTYAYKIGPYTVTQNGELVYQEENIQPLLIDLAKQGFNPKDDKINLKLSYNRQNFDESSLDHLRQLIWAKGNLIKKALAIDSLPLEVTDEKVSLDWFKEIDPKESEAYQLFLNHLVDYAKKRTRVITQPREYENPRYAFRCFLLQLGFIGPEYKEARKILLSKLHGSCAFRKEATNHA
523769..523975                     hypothetical protein; HMPREF0538_20529                                               N/A                 LactobacillusreuteriSD2112MRRIEDELAKRDRIRKQVLTIRDTGEVNMFDVPNVERLAYYYNCHDLIEYIHEDRAGYLNLIMTGKFN
524041..525642                     PHAGE_Gordon_Nymphadora_NC_031061: hypothetical protein; HMPREF0538_20530; phage(gi100002)     1.19e-103           LactobacillusreuteriSD2112MNKLKNYQPSRFMAKDSTYDKDAADFAVSFIECLCHTKGTWAGKPFELIDWQEQIIRDLFGILKPNGYRQFNTAYVEIPKKQGKSELAAAVALLLCCADGEERAEVYGCAADRQQAAIVFDVAADMVRMNPALKKRCKILASQKRLIYEPTNSFYQVLSADAYSKHGFNVSGVIFDELHTQPNRKLYDVMTKGSGDARTQPLYFLITTAGTDEHSICYQVHQKALDIMEGRKHDPRFYPVIYGADREEDWSDPEVWKKANPSLGVTVAMEKVKDAYNSAKENPAEENTFRQLRLNQWVKQDVRWMPMDKWDACAFPVDPNQLRGRPCYGGLDLSSTTDITAFVLVFPPLDDSEGFTLLPYFWIPEDNVDLRVRRDHVPYDIWKQQGFLQTTEGNVVHYGYIEHFIEELGKKYNIREIAFDRWGAVEMVQNLEGMGFTVVPFGQGFKDMTPPTKELMRLTLEKKIAHGGQPVLRWMMDNIYIRTDPAGNIKPDKAKSTEKIDGVVATIMGLDRAIRNEGGDGDSVYDNRGLLLI
525670..525831                     hypothetical protein; HMPREF0538_20531                                               N/A                 LactobacillusreuteriSD2112MNHEQGKAPIDISLLTKEQFDNEIQKGFSDFENGRTFTAEQVQAQLLKHENDN
complement(525972..526133)         hypothetical protein; HMPREF0538_20532                                               N/A                 LactobacillusreuteriSD2112MIIREVIFMDKIPTAEDWVELLKNYPVEDIEIDENGHYDPEKHPEFHDWMVNG
526190..527446                     PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; HMPREF0538_20533; phage(gi46402090)     2.07e-81            LactobacillusreuteriSD2112MSIFNKLFHTNKASPKNTLSSTMSFLFGSTTAGQNVTERTAMQNTAVYACVRVLAESLATLPLHLYQLTDDGGKQRVNDHSLSFLLHDAPNPEMTSFIFRETMMTHLLLWGNAYAQIIRNGQGQITGLYPLMPDRMDVNRARNGELYYTYTRNYDDYQAKDESKQVVLLSDEVLHIAGLGFDGLIGYSPIAMAKNAIGLSLAAEQYGSTFFKNDATPGGILEHPSVVKDPERLRKSWQSQFSGPSGHSIAVLEEGMTFHQLSIPPDQAQFLDTRKFQLDEIARIFRIPPHMIGDLERSTFSNIEQQSLEFVKYTLNPWCVRWEQAMNQQLLSKEEQGRYFIKFNVDGLMRGDYESRMNGYAIGRQNGWLSANDIRELEDLNRIPTEDGGDEYLVNGNMLPVKDAGQFYQTKTTGSDQA
527443..528105                     PHAGE_Clostr_phiCTC2B_NC_030951: membrane-associated initiation of head vertex; HMPREF0538_20534; phage(gi100034)     2.44e-35            LactobacillusreuteriSD2112MKRFWNWSSENNTPTLTINGTIAPDSWIDDEVSPQVFQDELNQSCGPIDVWLNSPGGDCVAASQIYTMLMSYPNDVNVKIAGIAASAASVIAMAGTKVSMAPTALMMIHNPLTIAAGNRSDMAKAIQQLDETKESIINAYEIKTGLPRGKIAALMDEQTWMNPNKAIELGFADEVLNAESVSDSYTYSEHQSTLQILNKLQSKNHYPIESLQRRLFLLPH
528126..529304                     PHAGE_Geobac_GBK2_NC_023612: minor capsid protein; HMPREF0538_20535; phage(gi589893767)     1.14e-39            LactobacillusreuteriSD2112MSKLTELQTKRAKIWQQAKDFLDEKHQESDVLSAEDNATYEKMEADVVSLGKEIDRLTKQMEIDNQLKLPTSQPLTTNPATDKQGLVTNYSQDFWNLMRGQAPVTNALKEGTDPDGGYLVPDEFEKQLIQKLHEANILRSISHVIKTNSGEHKIPLVATEGTAAWMEEEAAYTESNTQFSQVSLGAHKLGTLIKVSEELLNDSAFNLMGYLSEEFGRRLGDAEEKAFLTGTGSGQPTGILNDTTGATLGSTAKSATDINFDDLIDLFYSLRAPYRKNAVFIMSDDTVKAVRKLKDKNDQYIWQPSVQAGQPDRILNCPVLTSQYMPTLAASNKPVLFGDFNYYWIADRQGRTFKRLNELYAVTGQVGFLGSQRVDAKVILPEAIKYLSMAAK
529317..529595                     PHAGE_Cellul_phi10:1_NC_021802: head-tail connector protein; HMPREF0538_20536; phage(gi526178175)     4.59e-05            LactobacillusreuteriSD2112MEIVSLDEAKTYLRIDGTSEDQLITRLINSATTIVENILRQPLSSFDQVPEDIHTAVLYCLAYLYEYRETADFDAMVKFLRAILTPYRKEAF
529596..529976                     PHAGE_Clostr_phiCT19406C_NC_029006: head-tail adaptor protein; HMPREF0538_20537; phage(gi971821549)     3.14e-14            LactobacillusreuteriSD2112MQKQNNRTSKIADIGELNQRIQLMKIETYGRNPNTYQPLERNVVFANVWAKVSALHGQEYYTAVSVKLEKQLSFIVRYRPDIDEKTNIWFDGRGYNIGFIDNVKYRNEYLEIKANYSKGVRPPNED
529966..530388                     PHAGE_Bacill_250_NC_029024: holin; HMPREF0538_20538; phage(gi971766651)              3.65e-33            LactobacillusreuteriSD2112MKISISAFPINSWFGIVGAFLGWFLGGLDDLLYVLLIFMAVDYLTGVLCAISERKLSSEIGFKGIMRKVLILVLVGIAHALDVYLLKNGSAIRTATIFFYVSNEGISLLENASRLGLPVPEKLKEVLKQLHGKNDDHNDQ
530486..530674                     hypothetical protein; HMPREF0538_20539                                               N/A                 LactobacillusreuteriSD2112MDKPKMEFKITTQEIIDDLHYHQAQAIAEDFLARGLINQSQFEEIEKLNRQSFPPLLAELMV
530736..532289                     PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; HMPREF0538_20540; phage(gi77020163)     4.62e-30            LactobacillusreuteriSD2112MASVTKLTKPQSKVQATLQVAAYCRVSTNSDEQEDSLANQQDHFKSYIQQQPNWLLHKIYYDNGISGTKAQNRPGLQALLKDCQNGQVDLVLTKSISRFSRNTTDCLRIIRQLKQLDIPVIFEKENINTDSMDSELILSVLGSLAQDESQSIAHNVRLGYQQRASNGVFHYSLPPYGYQKDANRDLIIDPIERKVVLRIFNWTIEGKSPGQIAQTLNEQAISTKRNGKWHDSTIRGILQNTVYLGTTEFQKTFTDDEYHRHPNQGEQGKIIIEEHHPAIIDQATFTQVQKIIMLKRKFYPQAKAKPQRHTFSRKIYCGNCQKLFKRQSRSGKVCWGCQTHIKSAKDCPVKSIREDALHLAFCTMVNKLIFSQKFLLEPLVEQLQADQNQEQAAKLSQVETELKEAKDKQDNLQQLRKQELIEKDFFTKQDAELEQEIANLQSEIERLKQLLGDQNSKLPLTHELLKLCQRSNYLTAFNAELFEQIIESITVDQDHNLTFHLKCGLNLTEGSKHHVKA
532276..532680                     recombinase; HMPREF0538_20541                                                        N/A                 LactobacillusreuteriSD2112MSKLKYGYQWQAGQIVINPDQADVIKQIFAGFLAGQTRNHLARQFNLTHTSVLRILTSNKYVGGDGYPQIITTTNFKQVQKQLKKQIVRKPKKQPTPPTKFYRGIINRYSDDAFKQAEHIYQLIYSEVEVYGES
532667..534253                     PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; HMPREF0538_20542; phage(gi77020163)     8.91e-27            LactobacillusreuteriSD2112MAKVRIIPAQVKQGNRNRQIEESEAKLKVAAYCRVSTLYEDQASSYETQVAHYKEFITKNPKWELAGIYADDGISGTDTKKRNQFNQMIDDAKQGKIDLIVTKSISRFARNTIDCLQYIRELKELHVAVFFEKENINTMDAKGEVLITIMASLAQQESESISRNIKIGLQYRYQRGQVIVNTARFLGYDKDDDGNLVINPEQAKVVKRIFYECLTGKSAIEIARELTKEGIKNGIGRTQWHSSGIIKILRNEKYIGDALLQKTYTVDFLTKKRVKNDGQVPQYYVENNHPAIISRAVFYQVQKLLDMRREGFTTEGGHHHGYTNAYCFSSIVYCGRCKDIYTRCVWYRPRIGEVEKVNVWRCYSRLHWNHKGKRCMGRTITEADLEEASLKAMNELIQQHQLADKQIAANILKVTKGTTGPSLDELDQQLEDQQLLLLNMSTHNKNVEQLTEQVQALRKQREQLIQQEIDHDIKRSNLKNIQSFFQTYQGGLTKFDEKLVRLLIEKITIFKSKIDFTFKDGEVITVKM

#### region 5 ####
696279..696290                     attL                                                                                 N/A                 ATTTTATAGATA
696741..696752                     attL                                                                                 N/A                 AATATTCATTAA
complement(697561..698337)         PHAGE_Bacill_G_NC_023719: gp245; HMPREF0538_20704; phage(gi593777701)                1.18e-21            LactobacillusreuteriSD2112MQSEDKRMENSVALEVKNLQVLYGDKHVVHDVSMKFPANKITAMIGASGSGKSTLLRSLNRMNDDLATVKGEINFHDLNINQPKVNVYRIRQQIGMVFQQPTPFPLSIYENVIYGLRLAGVKDRQILDQRVEESLRQAALWEEVKDHLKESALALSGGQQQRLCIARTLAVQPEIILMDEPTSALDPVSTSQIEDTLVQLKEKFTIIMVTHNMQQASRSADWTAFMHQGKLIEFNQTADTFMNPQQQQTADYLSGKFG
complement(698327..699208)         phosphate ABC transporter, permease protein PstA; HMPREF0538_20705                   N/A                 LactobacillusreuteriSD2112MRPEKVDRLATVIILTLTGLVGLVLFALLAYLLLSGIPHISWHFLTSSAESFRSGGGIRDQLFNSLYLVVLTLIVSIPLALCAAIYLSEYAPDNRWTNLLRLAIEVLSSLPSVVVGLFGYLVFVLQWGLDFSLLAGALALTILNLPILTRACEDALCQVPYLQRQAGLGLGMSKWRVTTKIVLPAALPGIITGAILSAGRIFGEAAALIYTAGQSSPAISYTDWNPFSPTSFLNPLRPAETLAVHIWKVNSEGLVPDARAVSNGSAAVLILTILIFNLLARYIGYLIKRRLAK
complement(699208..700107)         phosphate ABC transporter, permease protein PstC; HMPREF0538_20706                   N/A                 LactobacillusreuteriSD2112MEDLRQRLTQPSVESKQEASGKVISYLAITLIGGLVATILIFLTWKGIALFTGNHYSLWDFLSGIKWRPSDHVFGALPMIATSFSVTLLSGVIALPLALVVAIAITEILPSTAYKFLQPTIELLVGIPSVVYGYVGLTVIVPFLRRFFGGTGFGILAATCVLFLMILPTMTSMTIDSFRAVPKQYRNASAGLGATRWQTISRVIIPSAKSGILTAMVFGMARAFGEALAVQMVIGNTTVMPTGLMHSAATLTSVLTTGIGNTVMGTISNNALWSLALILLVMSLAFNLLMRLVSRKGVK
complement(700112..701017)         PHAGE_Synech_S_SKS1_NC_020851: ABC-type phosphate transport system; HMPREF0538_20707; phage(gi472340910)     7.35e-11            LactobacillusreuteriSD2112MKTTNKQVGIVMKKTIIGVVIVAIVCWLGGSWVLAKQQPSQEKITIVGSTALQPLAEAVANNYRTKHPQTSIIVQGGGSGTGLSQVQAGAVNIGSADIFADQQDGINANKLDDNIVAVSGIVPIVNEELGIKNLTMKQLQQIFTGQITNWQEVGGPDLPITVINRAHGSGTRVAFEQTVLKPGMQAVNAQEQDSNGTVKEIIRNTPGAISYIAFAYLNDQVQSVSLDGVAPTADNITTNKWPLWSYEHMYTQKQPSQSTANFIKYMQSEKVQKTLVTEAHYISIHDMKVEKTPTGKVTERK
701110..701820                     transcriptional regulatory protein, C-terminal domain protein; HMPREF0538_20708      N/A                 LactobacillusreuteriSD2112MTKKFLLMSQQDDLVQQLQAICKKEHWTYELVTTPTGLVVALEKNQISGIWWDMTEVSLDTTIATMTLIRSQVQGPITVFTPRFTEHIQRKLYRAHVDDVIAFPLLPSVFRSLIQQRLWTYHYPQMHSLADDNMTKNDPVITTGSWEINQETYTVTKNDKTIALTPKEFQLLSYLVDHKGQVLNRDQLVNGVWGYDILDTSRIVDIHISHLRDKLEDDSQHPTHLLTVRGFGYKFV
701912..702454                     PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0538_20709; phage(gi9635740)      7.30e-08            LactobacillusreuteriSD2112MTYTHLTTNELTIIAHSFVQKLKAYRVAQMINRSAETVYRVYRYLETGASIADYQDHYMRNKQRCGRKRTQLSLAELTYINDKIAQGWTPDTIIGRAERPISCNRRTLYRMFERGQFGLDVRALPMRGKRHPNGYIERRGKAGQLGRSIHERAKDFPHYATEFGHLEADTVQGQKAPKGR
702454..702879                     PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0538_20710; phage(gi9635740)      3.46e-19            LactobacillusreuteriSD2112MTLTERQSKVEIVLNVHEKTADAINQHLGQWLRKFPQHFFKSITFDNGKEFAGWREIANQFDLHTYFAEVGAPNQRGLNENNNGLLRRDGLTKQLDFRNLPDELVTQLMSKRNNLPRKSLGYRTPYEVFMSYVTDEQLLSF
703155..703166                     attL                                                                                 N/A                 CTAGCGAAGACA
complement(703196..703843)         PHAGE_Pseudo_phi3_NC_030940: protector from prophage-induced early lysis; HMPREF0538_20711; phage(gi100001)     3.18e-10            LactobacillusreuteriSD2112MIKYLQQYIDDPWTLRLIRKFLTSGVLDHGLFAKSEKGTPQGGPLSPILANIYLNELDKELTRRGHHFVRYADDCNIYVKSQRAGERVMRSITQFLEKRLKVKVNPDKTKVGSPLRLKFLGFSLGVDHNGAYARPAKQSQQRVKKALRLLTKRNRGISLTRMFEEIHRKMRGWLQYYSIGKLTDFIQRLDKWLRARIRQYIWKQWKKLKTKVTNL
complement(703932..704897)         PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0538_20712; phage(gi9635740)      5.38e-35            LactobacillusreuteriSD2112MTYTHLTTNELTIIAHSFVQKLKAYRVAQMINRSAETVYRVYRYLETGASIADYQDHYMRNKQRCGRKRTQLSLAELTYINDKIAQGWTPDTIIGRAERPISCNRRTLYRMFERGQFGLDVRALPMRGKRHPNGYIERRGKAGQLGRSIHERAKDFPHYATEFGHLEADTVQGKKHQGAVMTLTERQSKVEIVLNVHEKTADAINQHLGQWLRKFPQHFFKSITFDNGKEFAGWREIANQFDLHTYFAEVGAPNQRGLNENNNGLLRRDGLTKQLDFRNLPDELVTQLMSKRNNLPRKSLGYRTPYEVFMSYVTDEQLLSF
complement(704974..705486)         PHAGE_Pseudo_phi3_NC_030940: protector from prophage-induced early lysis; HMPREF0538_20713; phage(gi100001)     2.55e-13            LactobacillusreuteriSD2112MRQSQKTEQQADRLSRIGLENRKYTRARSTDYGEGKGMSVTIQDLVLDRNNLNQAYLRVKRNKGAAGIDDMTVNDLLPYLRENKTELIASLREGKYKPAPVKRVEIPKPNGGVRKLGIPTVVDRMVQQAVAQILTPIFERVFSDNSFGFRPHRGAHDAIAKVVDLYNRRL
706046..706510                     PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0538_20714; phage(gi9635722)      5.58e-34            LactobacillusreuteriSD2112MYQNYTIGQTEFVLNYNYDLPQNHVARLISDFVDSIPQDVLLEDSVAATGRPSLHPAIMLKILLFAYARQTYSGRKIEMMLDENLPMRWLAYDYTYSYHTINNFRRSQHASKLIKHAFVYFTMVLKDHGLIQNHAVFIDGTKVEADANKYSFTW
706586..706768                     hypothetical protein; HMPREF0538_20715                                               N/A                 LactobacillusreuteriSD2112MVQEMAPELVTSAEGMDVMEQELAEKITKLDGEIKQEPKIIKGDSVRKRRRRFLKSFVTN
706873..707109                     PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0538_20716; phage(gi9635722)      1.20e-26            LactobacillusreuteriSD2112MKEDPMMNRELKPGYNLQIATHKQFVLDYGLFSNPTDTRTLVPFLTQFHALDFFEHIVADAGYGSEYNYTMILDRFEK
707331..707342                     attR                                                                                 N/A                 CTAGCGAAGACA
707364..707765                     PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0538_20717; phage(gi9635722)      2.68e-12            LactobacillusreuteriSD2112MKVNPTWNYYKAKVKDTLSSDEGKAIYRRRMSDVEPVFGHMKRDFGIPRTHLSGQRAVENDIGLALMALNLTKFGQSISRLKTNFITNLKSELRFLDRSKIIVRILLLENQELIVNSQPRFISVINLIYLSSV
complement(707791..708174)         hypothetical protein; HMPREF0538_20718                                               N/A                 LactobacillusreuteriSD2112MMNQEANHGITYSLSFLRNADYSKVLFWLGIKPLDFDDLHELLTNISNNQSITIIEELQTKYLISPIKEAGCFVLTTGGQEIARLIMSLGVWGRQQMDENGGNNSVQVVLPRFFHGAKRTIKVSKHG
complement(708337..709350)         hypothetical protein; HMPREF0538_20719                                               N/A                 LactobacillusreuteriSD2112MDKIIALTRQQREDILQQLRPDQVQALSEFTRYAMLSRFHTHHYLKQTDWEFQGMVIDPWYQRQHDHPGDNLYCDCGRRLKNQFILRSRTTGRQLFLGISHFQQHASIPHKVAREIQAGINEINLYMDSILLAYQAGRRFPKKIFQFVVAQQGFKNHEGTILYQRCNLFSQVDLPLHQRDYQDLQTLYHQLKQGVTHRLTKEEITQLRDDIATDWRQVDQQITMFNYLLRQHGLTVQDLHRIKSNSINYALQRRKTRFMIHDYKQFKDVTLTKARSQLAIKLRQLSFYLQIFQPNELAKVQCEQAQQILIAHKMSSPKSHFFGIKEAQILLKSKYTI
709467..709997                     acetyltransferase, GNAT family; HMPREF0538_20720                                     N/A                 LactobacillusreuteriSD2112MDLDIQPVRLSLKEYKQVKQLYMRAFPKYEREPWTWLLIKSKYQRADFMAFYDQEQFVGFAYVIHSHGMHYILYLAVNDQIRSQGYGTRIINELRRLYPEDSLALDVEQPNPQAANNQQRLRRLKFYRRNGFFPTPKLFKEEKVTFQVLATNKKINQRKIDKAFEWFSWPLGWLIQ
710309..710761                     mannose-6-phosphate isomerase GmuF domain protein; HMPREF0538_20721                  N/A                 LactobacillusreuteriSD2112MPKVYQQHPELFGNPRSSVFPLLTKILDANASLSIQVHPDDAYAEEHEHELGKTECWYVIHAEPGAYLTYGHTAKTRDELIKMIDNHQWSKLFSRKPVKTGDFVYVPSGTIHALNKGIIVLETQQSSDTTYRIYDYDRRDKKQVSYASFI
710934..711359                     PHAGE_Prochl_P_TIM68_NC_028955: putative zinc-containing alcohol dehydrogenase superfamily protein; HMPREF0538_20722; phage(gi971760362)     4.39e-06            LactobacillusreuteriSD2112MGATETINNTAEDPVKAIKEIVPRGVTYAIDTTGNTGVIKSAIDSLATAGECVLLGVCGDITLNLMNDILSESKKISGVVEGDSNPQEFIPQLVKYYKQGKFPLDKLVKYYDFADINQVIADSTNGKVIKPIIKIDPELAK
711370..711381                     attL                                                                                 N/A                 TGTTTTTATGAA
711377..711841                     putative low molecular weight protein-tyrosine-phosphatase PtpA; HMPREF0538_20723     N/A                 LactobacillusreuteriSD2112MKVIFVCLGNICRSPMAEAMFKKMVAEAGLADQITIGSAGTSNIAEGSPADSRTKAILDKYHIKDDGMIARQLQDRDYYDADYIIAMDQMNVRDAKDMAPAGLENKVHGIFKATPGKENCYIVDPWITHRFQDTYDSLSEALPNWLAKLKKEIK
complement(711924..713342)         PROPHAGE_Escher_MG1655: IS150 transposase B; HMPREF0538_20724; phage(gi16131429)     3.14e-47            LactobacillusreuteriSD2112MYPQSWKSTLGVFYMTKISVKTKLKAVEEYANGNVTLASVRHKYGIAEHDFQIWVGIYARFGKGPLLNPPKVTGDFRLNLVKWKQENLASISETCIHFGYRSPGSVYQWECLYNKQGPQALLRLRRGRKPKNGQTTRQESRQASSAPKTEPNLTKRKLIVKDTNRCLKKIDSLEKASKKELAQVIYDLKAKYLLKDLIDALPISMSTYQYWQNRFEHPDEDEEELKAVIKGLFNYYQAEYGVRRLSTQIRDYYRLIGKKTPNHKRIQRLMHEMGLKCIKYNRRVRKYDSSKGPNGKKAKNKLNRRFMSNRKYQKMVCDITELKAHDGRKVYLEIIKDLATNQLLTWSISQHPNLQFALDPLQQLLKQLPHTGYQLTLHTDQGWHYQHRAWRKLLRQGNIRQSMSHRATCLDNAACETVFSKLKAEIDPDTSYRNQEELSQAINEWIHFYNERRIQTKLGNQTPLQYEQNLVA
complement(713378..714421)         hypothetical protein; HMPREF0538_20725                                               N/A                 LactobacillusreuteriSD2112MNKKIGFLMVTGMGLLLAGCGNQANNKAANSSSASSSSLLVAKSNVKVNSDNMSPQEAVSLISTYCGLRYGGNWAAMAKEAQKEGLQVNLYPSSKYQLSDGGQGVAYDVTAGGKSQGLVYTVNNDDVNIYQNVKENQKSTKLATISKSEMANYVNQEGQGKLVNDLAAKAQVVDKRSGDSNSSASTSNSGNDHKYGRSGTIDVPSEMQGTWYSADNDADSTITFGPHTFTYSGENSSTTTQLFKQDSEWGEDEDNYTNEGIQNATKNWGKASFFNMDGSRWLNIRGWVQNAGDGSSYTVKTETIDGKQVKVLVSAGGAGNWVDAVYYQSKDMAQQNADKKFDDLNYQ
714562..715893                     PROPHAGE_Staphy_N315: transposase; HMPREF0538_20726; phage(gi15927655)               2.72e-54            LactobacillusreuteriSD2112MNNSIKTILGIKDPYLKLDEKNFDNPIEDQPNQIIVHLIQTYPMHCPKCGHLMCKNGYKTVNCLGPELHFKPTIWSIKKQKYICKASSSCPEVVTKLAAVEDIHYRNHISLAIKQRAMMLLTKNESQSDLAKELNVSDWTIRRVITNLDQFFKPNYHWLPRHIAFDDFKSGRFAPSGMSMILMNIENKRTLDIILSRKNSYLRKYFLRYDRSARLAVQTVTVDLYTPYRHLIHELFPHALIIADHFHIVAQAYRAFNKIRIQVMNRAGAGTHKWRALKHFWKLLLTPANELKYDNYWSRRNFSYAQLTDVEVIHRLLSFDNELKRAYEYYQNLILVIAHHSKKELKNLLAIKWTQLPQALQKVQRTLRRHKQEIYNSFKYDTYTNGPVEGTNNKIKVIKRTAYGFRNFFNFRIRILLALPNTYIAINWRNKQTAHAKVQAQAA
715984..715995                     attR                                                                                 N/A                 TGTTTTTATGAA
complement(716115..716672)         translation elongation factor P; HMPREF0538_20727                                    N/A                 LactobacillusreuteriSD2112MIQTIDLKKGMVFERDGKLLKVLQINHHKPGKGNTLMQMDIQDLRSGSIVHTTMRPSEKVEQVNVDKRSAQYLYDEGDSAVFMDLESYEQYSLNHDLLGDDKNYLVENMKVILNFVNGDIIGVELPTTVELTVAETEPMIKGATIDGGGKPATMETGLVVNVPAFIKNGDKLIINTTDGSYKSRA
complement(716932..718113)         hypothetical protein; HMPREF0538_20728                                               N/A                 LactobacillusreuteriSD2112MTFNFHSDKLTTIIKQKINYKEALMMENRVSNSKANATYQNSSKVKEVAYRIFAAVANAILVVLGGGLLTQTIGNLTGIHVLTLIGGEAQALLAPAIGVAVASQMNTNTLVTFASMVAATVGSNGVHFTDTAVKGMTATGQVTAAAAGAPVLTTGQPVSAVLAALVAVLVGKYLTGKTPLDMVLVPFGALAVGIGFGLVVAAVVTPALLAVSAYIAHSMQVSPVLGSMVISVVWALFLMTPASSAALAVALMLDPISSAAALIGTTAQFVGFTAMSFRQNNLGANIAQGLVTPKVQFPNLLINPYLLVPTVVSAAVCAPIATVLFDFRSTSTLGGLGLNSLIAPIAYLSRGWAQFSTYMVFGVVAPAVLSIALYLVLKRAGFIGEKQLHLELV
complement(718366..718590)         PROPHAGE_Salmon_Ty2: transposase; HMPREF0538_20729; phage(gi29143766)                4.00e-15            LactobacillusreuteriSD2112MGYLKEKSALMMFDRHANLKYKYGNRHFWAECYYISTVGLNESTIKKHIRDQEKRDISMDKLTSVEYSDPFKGK
complement(718986..719387)         hypothetical protein; HMPREF0538_20730                                               N/A                 LactobacillusreuteriSD2112MLAFGPTGVVNASVQADTTTPATTQAGGIVAESAQPQNSGDETALDTAETKRNVVANTTDTSRTSEQKTTTAQATENSSAASSANKTNSEEENKNAFLTFNVNTADTPANEAIQENKIVATTATTTTNGGYDY
complement(719677..719802)         hypothetical protein; HMPREF0538_20731                                               N/A                 LactobacillusreuteriSD2112MKWVRKLAQSVVTIVLQALVARLVYHLFAKKQPKETTKSND
719910..719922                     attL                                                                                 N/A                 AGATTAGATAAAA
complement(719955..721085)         PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0538_20732; phage(gi9635740)      2.21e-25            LactobacillusreuteriSD2112MTHLNDTMPTNFLATHRKYAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELKRGTVRQIRRQKFNGKTYDYPYHIYSYEAGQNIYLKCHQRSGRPRLYYRSKRFLQLADQLMLGEFDEHRYSPQAAIYKARDLMSDDSLIPKSVVTLYQWINDGVLRTSNLDLFEKTKRKHHQSHPQAKKCLGPNIAQRPQVADQRSEIGHWELDTIQGHKDGKDSVVLVMTDRFSRVNITRKITSKTAYAVNHFFVELRQKLGKNAYYRIFKTITSDNGSEFSELTRVHDHVFYTDPYSPWERGSNEINNRFLRKEITKGQAINDYSSAQIIATNDWMNHYPRAIFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI
721203..721215                     attR                                                                                 N/A                 AGATTAGATAAAA
complement(721347..722246)         NLPA lipoprotein; HMPREF0538_20733                                                   N/A                 LactobacillusreuteriSD2112MTNSKNKSKGVVMMRKKKHTGWWIIGIVVVILVAAGLSVGANGGFTRNDEITVGTIGPDVQVWQHIANSKQAKSEGLKIKVKSFTDPVALNRATASGEIDVNAFQSWSYLQAYNKENKKAQLAAIGTTYLEPMGLYSDKYKSVKDIPDGATVAIANNPANTARGLLLLQSAGLIKLKPGFGATSGTNEIAANPKNLQFKEIDDTTGPRVLKSTDLVLIGNTIALTGHLNVLKDSIYHEKVDQSTKDNINVLATAKKNRDNKEYKKLVKLYHNKQIQQWIAKKYQGTKVNVDKPLNYLEN
complement(722326..722802)         S-ribosylhomocysteinase LuxS; HMPREF0538_20734                                       N/A                 LactobacillusreuteriSD2112MAKVESFTLDHTKVKAPYVRLITVEEGAKGDKISNYDLRLVQPNENAIPTAGLHTIEHLLAGLLRDRLDGVIDCSPFGCRTGFHLITWGEHSTTEVAKALKSSLEEIAYKTKWEDVQGTTIESCGNYRDHSLFSAKEWSKKILDEGISDKPFERHVVD
722894..722905                     attR                                                                                 N/A                 AATATTCATTAA
complement(723190..723876)         Matrixin; HMPREF0538_20735                                                           N/A                 LactobacillusreuteriSD2112MRRFLVALLVAGMVGISDYHVHADADAPSQPFQSSFFSQDSSDSNDFQFSNGGQRPNAERLRIPENTPTPLEGFRWKKKNITIYMETANPKLKWAFRDAVKKWNKTKAVHICWTKNEDKANIIAADGDLARNNTGNNGVGYTTSELGSTRTEYDPTTNTLHKATSTLDPNQLDYTNKEFRSEVAQHELGHALGLAHAPEYEHSVMIPRNIKNGITKNDAKTLRMLYHE
complement(724056..724325)         hypothetical protein; HMPREF0538_20736                                               N/A                 LactobacillusreuteriSD2112MVGEFVPKEFGWELTFLVPYSIFMQLFANLWRFWGIDTMNIFLRFGFNLLGLVIAFAGYALYQQCDCCFQPHDKLTVYLKRRASLKFTK
complement(724723..725004)         hypothetical protein; HMPREF0538_20737                                               N/A                 LactobacillusreuteriSD2112MGRKSKYSAEEKFLILNEVLRNGIHKVIIKYKISQKTIRWWSLLYKYQGMPGLQASHHNQSYSKEFKNSLVEQYQQTDEALDLWLVSKVSQKR
725250..725537                     PROPHAGE_Staphy_N315: transposase; HMPREF0538_20738; phage(gi15927655)               1.68e-08            LactobacillusreuteriSD2112MLDQLIKRNNLPSTMRRVKRTLAKHRQEIIASFYIRLTNGPIEGTNNKIKIIKRTAYGYRNFFHFRIRILISLKTSNLMIRELSKKRTRPKAKVA
725629..725871                     cytochrome b5-like Heme/Steroid binding domain protein; HMPREF0538_20739             N/A                 LactobacillusreuteriSD2112MMADKVMTRDELAKYNGQAGQPAYVAVEGVIYDVSANPAWQGGRHHGNLAGQDLTDVLLEKSPHGKRVLKDLPVVGRLAE
726107..726880                     PHAGE_Staphy_phiPV83_NC_002486: transposase; HMPREF0538_20740; phage(gi9635740)      2.71e-31            LactobacillusreuteriSD2112MCRNRTQLSLAELTYINDKIAQGWTPDTIIGRAERPISCNLRTLYRMFERGQFGFDVRSLPMRGKRHSNGYVERSGKAGQLGQSIHERAKDFPHYATEFGHLEADTVQGKKHQGAVMTLTKRQSKVEIVLNVHEKTADAINQHLSQWLRKFPRHFFKSITFDNGKEFAGWREIANQFDLHTYFAEVGAPNQRGLNENNNGLLRRDGLTKQLDFRNLPDELVTQLMSKRNNLPRKSLGYRTPYEVFMSYVTDEQLFSF
734057..734068                     attR                                                                                 N/A                 ATTTTATAGATA

#### region 6 ####
1539262..1539273                   attL                                                                                 N/A                 CAAAAATTTTTA
1539539..1540669                   PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0538_21517; phage(gi588498272)     1.96e-29            LactobacillusreuteriSD2112MTHLNDTMSTSLLTTHKKNAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNRGTVRQLRRQKSNGKIYEYSYYIYSYEAGQATYLEHHRHSGRRRLYYSSKQFLRLADQLMLGEFDDHHYSPQAVIYKARDLMNDGTLIPKSVVTLYQWINEGVLRTSNLDLFEKPKRKHHRTHPQAKRCLGPNIAQRPQTADQRSEIGHWELDTVQGQKNGNDSVVLVMTDRLSRVNITSKIAGKTAHAVNQFFINLRQKMGTDAYYRIFKTITSDNGSEFSELTQVHDHVFYADPYSPWERGSNEINNRFLRKEITKGEAINNYSSAQIIATNDWMNHYPRAMFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI
1540713..1541645                   UDP-N-acetylglucosamine 2-epimerase; HMPREF0538_21518                                N/A                 LactobacillusreuteriSD2112MHPGQTLTEITIETMTKLEPIIQKEQPDIVLVHGDTSSAYASALVAFYNRVAIGHVEAGLRTWDKYSPYPEEMNRQMIDDLADLYFAPTQTSANNLKMGNHQHGIIVTGNTAIDALRYTIDHSYHHQVLDEIDPDKKVILLTMHRRENWGKPMEETFKAIQEIVDQRDDIDVIYPVHLNPKVQAVANKIFGNDNHFHLISPLDVVDFHNIMSKSLLVMSDSGGVQEEAPALHKPVLVLRDTTERPEGVTAGTLKLIGTQFNNVMRELSSLLNSPEEYNKMSEAQNPYGDGHASERIIDAIAKWAATQKEL
1541843..1542343                   ribosomal protein L10; HMPREF0538_21519                                              N/A                 LactobacillusreuteriSD2112MSEAAIAKKAEIVKQTTDMLNAAQSAIVVDYRGLTVAEVTDLRKQLRDAGIQMSVIKNKILDRAVEGTDYEDLRSTFVGPTAVAFSDEDPIAPAKILKKFADDHDALEIKGGFIEKSVKTLDEINEYANMPGREELLSMLASALQDPMRKIARAVKAIADKEDEAA
1542406..1542771                   PHAGE_Ralsto_RSB3_NC_022917: hypothetical protein; HMPREF0538_21520; phage(gi560186135)     9.56e-05            LactobacillusreuteriSD2112MAFDKDAIIASLKEASISDLNDLVKAIEEEFDVSAAAPVAVAGAAGGDAAAKDSFTVELTEPGSAKVKVIKAVKDITGLGLKDAKDLVDGAPSAIKEDVKEDEANDIKEKLEAAGATVTLK
complement(1542959..1543243)       hypothetical protein; HMPREF0538_21521                                               N/A                 LactobacillusreuteriSD2112MLFNVIFWILAIWFVINVIWMWFQLNNQILQKTFAWINVCAIVIGFWVYYGVSHDASAINGWFIAMNWVNIAIAAIQFYFGYRTSNDSTTHPAK
complement(1543375..1543605)       hypothetical protein; HMPREF0538_21522                                               N/A                 LactobacillusreuteriSD2112MFKKKNCPTSNSQNGATNAYQKGYDQAVKDYKALEPFRKYPQRIINVTNKFIKGKMHALRDYVDGYEDAKQQLSQN
complement(1543739..1544110)       large conductance mechanosensitive channel protein; HMPREF0538_21523                 N/A                 LactobacillusreuteriSD2112MLKEFKTFIARGNVIDMAVGIIVGAAFTSIVKSLVNNLINPLIGLFIGRIDLSNLVLTVGDAQFKYGSFLNAVINFLIISFVVFLMVKAINTFRKKEDNKKDTPSEEVMYLKEITELLKKNKD
1544217..1544549                   transcriptional regulator, PadR family; HMPREF0538_21524                             N/A                 LactobacillusreuteriSD2112MKIQITADLLDGMVLAILEHKDYYGYALTQRMQSAITISESTMYPVLRRLKKDGYLITYDQPYQGRNRRYYQITEAGKEHLQRIRKLWTDYKNSLDGIFYGLGEGEDKDE
1544542..1545153                   hypothetical protein; HMPREF0538_21525                                               N/A                 LactobacillusreuteriSD2112MNERQKYINDLSIYLRQLTDEERNDALEFYDEYIADAGLETRTAIEERLGTPRQLSHKILADYSIKANNESIKEGHPASPHSSWRVFWWVLVAIITSPITFGLGIAVLALLLAAGGVALSLIVGIVALIFGVAAIAIVSIYIGIGLIATNLFSGLFYFGLGLTLIGLFLVCLPLIYWLIRVIVQGIANFAKFIYAKVQARRKK
1545154..1545909                   hypothetical protein; HMPREF0538_21526                                               N/A                 LactobacillusreuteriSD2112MKKVFKVGVIVLILGVILLGIGFFNNGNKAVYFENNRPAIFHSHTKTISTNKAFERIDISASTANVIVREGKKYQITYSGISKHSPAVTVHNNVASIRQTDGFPLVFNFNDYQPHQDLIIVTIPHDQAIAGRIHLESGDLTVSQVKMDNIDVNSDAGKVEYRQVTLRGGSTKLSSGNFTGHDLTVQGQYTVNNQSGDNTVTNTTVDGYFLKTDAGDNELNGEDKGEEPLHQNDDAENVLRLITQSGDNEVN
complement(1546008..1548644)       aldehyde-alcohol dehydrogenase 2; HMPREF0538_21527                                   N/A                 LactobacillusreuteriSD2112MPANNKKQVEKNVLTEEEKKQNAQKLVNDIIAKSEAAFEQLRYYSQEQVDKICQAMALAAEEHHMDLAIDAAEETGRGVAEDKAIKNIYASEYIWNNIRHDKTVGIIEDNDENQTITIADPLGIIAGIVPVTNPTSTTIFKSIISAKTRNTIIFSFHRQAMKSSIKTAKILQEAAEKAGAPKNMIQWLPESSRENTSALLQHPKTATILATGGPSLVKAAYSSGNPALGVGPGNGPAYIEKTANIERSVYDIVLSKTFDNGMICATENSVVVDEEIYDKVKEEFQKWNCYFLKPNEIDKFTEGFIDPKRHQVRGPIAGRSANAIADMCGIKVPENTKVIIAEYEGVGDKYPLSAEKLSPVLTMYKATSHENAFDICAQLLHYGGEGHTAAIHTLDDDLATKYGLEMRASRIIVNSPSGIGGIGNIYNNMTPSLTLGTGSYGGNSISHNVTDWDLLNIKTIAKRRENRQWVKIPPKVYFQRNSLKELQDIPNINRAFIVTGPGMSKRGYVQRVIDQLRQRQNNTAFLVFDDVEEDPSTNTVEKGVAMMNDFKPDTIIALGGGSPMDAAKAMWMFYEHPETSWYGVMQKYLDIRKRAYQIKKPTKSQLIGIPTTSGTGSEVTPFAVITDSETHVKYPLADYALTPNIAIVDSQFVETVPAKTTAWTGLDVLCHATESYVSVMATDYTRGWSLQTIKGVMENLPKSVQGDKLARRKMHDFSTMAGMAFGQAFLGINHSLAHKMGGAFGLPHGLLIAIAMPQVIRFNAKRPQKLALWPHYETYHATKDYADIARFIGLKGNTDEELAEAYAKKVIELAHECGVKLSLKDNGVTREEFDKVVDDLARLAYEDQCTTTNPVEPLVSQLKELLERCYDGTGVEEK
complement(1549002..1550021)       PHAGE_Entero_phiEF24C_NC_009904: putative ribonucleotide reductase; HMPREF0538_21528; phage(gi158079504)     3.49e-144           LactobacillusreuteriSD2112MKLEEFKPVNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRELDDDHQWTVGHVFGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIKEIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKKVANVFLETFLFYSGFYTPLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYNFLYELYDNEEKYTHLLYDQVGWTDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVVMNGISTSTSNHDFFSQVGNGYRMGAVEAMNDSDYDVKDPNAGKDINARD
complement(1550136..1552307)       PHAGE_Entero_phiEF24C_NC_009904: putative ribonucleotide reductase; HMPREF0538_21529; phage(gi158079505)     0.0                 LactobacillusreuteriSD2112MALSDIDMTKVKYYDYNNEVNIPKNGQIQLDKDKLALEDFIKNNVEPNTKSFSSLKERFQWLEENDYIEEEFMNKYSEAFIEKLYDYLKTQNFHFHSFMAAYKFYAQYALRTNDKEYYLENYIDRVAMNALYLANGDEELAMQLADEIIHQRYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSNLREAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSYVDITKEYDNLVANDDIRKKKVNARDLEDEISKLQQESGYPYIINIDTENRDNPINGKIVMSNLCSEIAQVQVPAQVNNDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVEDLDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASNEIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKKLKENVMQDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQEKMIGKIYYPAPYLSNDTMPYYRSAYDMDMRKVIDTYAAAQQHIDQSLSMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRTFTDDSDEIGANQCESCVI
complement(1552407..1552628)       PHAGE_Entero_AUEF3_NC_042134: hypothetical protein; HMPREF0538_21530; phage(gi100010)     1.72e-14            LactobacillusreuteriSD2112MVTVFSKNNCIQCKMTKRFLEQHKISFIEHNIDEQPEYISQLKSEGFMATPVVKLPNGQAFSGFRPDQLNQLA
1552886..1553398                   PHAGE_Sphing_PAU_NC_019521: gp37; HMPREF0538_21531; phage(gi435844540)               3.73e-06            LactobacillusreuteriSD2112MKKINSSLSEQQKFMKMAIAEAKQARILDEVPIGAIVVHEGQVIGRGHNMREKFQDVTYHAEMLAIMEACTNLGSWRLEDCDLYVTLEPCIMCSGAIINARIKNVYYGAADPKAGAVDSLYHLLNDSRLNHQVNVHSGILGDECSQMLKNFFRKIRRRRKEARRKNKANP
1553689..1554099                   PHAGE_Sulfol_SMV3_NC_029103: putative transposase IS200-family protein; HMPREF0538_21532; phage(gi985760792)     2.70e-36            LactobacillusreuteriSD2112MVITIELDRNQHSVYLLNYHLVMVVKYRRKVINDEISEYLKHRFVVVGQAYGINLQEWNHDQDHVHVLFRATPHTEMAKFLNAYKSSSSRMVKKQFPEIKQYLWKSAFWTQSYCLISTGGAPLEVVKRYIESQGRK
1554099..1555274                   PHAGE_Lactob_CL1_NC_028888: transposase; HMPREF0538_21533; phage(gi971752662)        1.51e-149           LactobacillusreuteriSD2112MVLKAVKMRIYPNSAQRNQLWQTFGCVRFVWNQMLNMQIERRKNNPEAKFVNAFGMNNLLKQLKVEYPWLKQAESTALQSANRNLADAFQRFFKGQNKFPRFKSRKYSQSYNSKYVNGNIKVLDCHHIKLPKLGIVYFRAGRLPMGKIKNVTVRLNVAGQYYITVLVESENQTLPKTSKYIGGDLGLKSLLNLSDGCKEPINHFEDKYHKKLYRWEKLRSRRFLKAQQEIAWDHHNKVLVPRQLDDFKNYQKARIMVAKYRQKIANQRLDQLQKFTTKLVKKYDIIVLEKLNTKGMMKNHHLARAIANASWSKLVDVLQYKCDWYGKKLIQVNPSYTSQICANCGKNNHRLGLNKSEWLAVREWDCPNCGKHLDRDINAAQVILQKGLAIR
1555521..1557356                   PHAGE_Clostr_phiCTP1_NC_014457: putative DNA polymerase III; HMPREF0538_21534; phage(gi304360727)     9.21e-66            LactobacillusreuteriSD2112MSYQALYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCHHSKDGEPCNECEICKAITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISAEDAFNRMKYILDQKEVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDNEVKLDDALLVTGSVTKQLLKKYFLEISKHEGATALDTMKDILDEGKDGQRFIEDLISFIRDILLYQESPSLISVESTGLKQEDFEEIVQLASSATLYQMIDELNNIQEEMRFTTHPDVYLEVLTIKLAQIEPQKNIQSAPAVSSDTNTEATKTIEKLQQEIQQLQQTVKQLQNVPAKASRPSPRQQNEQPRVQQKKVQVNLNKIYPVLENATRQDLINVRELWGDMLNLLSVPQRSLLHVSQPVAASAVGIIVAFDYPFLFQQAADDTTLLENMESALQRLTGNERQVVFVPKDKWPKIRQDFIKDHGFGKNQQKSQPIKQKPQTTEESGQTHAATPAPMEEPPLPPEDETLTEEKSPQEDNQVATAQKLFGSDIVKVEDN
1557365..1557685                   DNA-binding protein, YbaB/EbfC family; HMPREF0538_21535                              N/A                 LactobacillusreuteriSD2112MDDIMMRGMNMQQMMKQAKAMQKKMMAEHEELAKQEFVGKAPDDMVTATFSGDNQLIDLKIKPEAVDPDDIDMLQDLVIAAVKDGMKQVNDATQQKLGKYTQGMGL
1557689..1558291                   recombination protein RecR; HMPREF0538_21536                                         N/A                 LactobacillusreuteriSD2112MIQYPEPLAKLIESYTKLPGIGQKTATRLAFYTLSMQEDDVTNFAKSLLSAKRDLHNCSICGNITEDDPCPICRDKTRDHSQILVVEQLQDVMAMERMHEYHGLYHVLHGVISPVAGTGPEDINITSLLKRLKKDNEVKEIIIATNASSDGELTAGYLAKLIKPAGIKVTRLAHGLSVGADIDYADEMTLFKAVQGRTEM
1558296..1558544                   hypothetical protein; HMPREF0538_21537                                               N/A                 LactobacillusreuteriSD2112MFFKRPTKEVERERNQRLLEAVYSTKASWDHARETERAVYEANVNSELHYRSRIQEQKFLYLYKIARKFKVHGTLNDGVIDR
1558464..1558475                   attR                                                                                 N/A                 CAAAAATTTTTA
1558554..1559195                   PHAGE_Pseudo_EL_NC_007623: putative thymidylate kinase; HMPREF0538_21538; phage(gi82701134)     3.24e-33            LactobacillusreuteriSD2112MDGKFISFEGPDGAGKTSVIQQIQQQLEDQLGTEKVMYTREPGGNKISEQIRQVLFDGQNTDMDGRTEALLFAAARRQHIVSEIIPGLKAGKVILCDRFVDSSIAYQGAGRGLGEKEIWQINQFAIDGLMPSLTIYLDIESEIGLRRIAEHRSNQINRLDKEKLAFHQTVRQSYLKLYKNYPERIKLIDASQPLEKVIEDVKATIHDRFSDLF
1559215..1559538                   hypothetical protein; HMPREF0538_21539                                               N/A                 LactobacillusreuteriSD2112MKMIIAIVQSKDSNRLRKAFNKADIHVTQLSTTGGFLREGNATFLIGIEDERVQEVLSVIKKNAESREQYVTSQMHMDVEGGSAFPVNVKIGGATVFVLPVEDFIKF
1559553..1560566                   PHAGE_Clostr_phiCTP1_NC_014457: putative DNA polymerase III; HMPREF0538_21540; phage(gi304360727)     2.81e-10            LactobacillusreuteriSD2112MAEQGQTRTEKLQPAIITRFQKILLNKELAHAYLFVGPGGSGKMSIAQWLSLRLFCLHPQDNKPDLTCDECQRILSGNHPDIVYAAPEGRQIKVDEIRHLKAEFSKSAVEGNKKIFIIKDADKMTNGAANSLLKFIEEPGTGVYIFMLTTNKSAVLPTIRSRTQVIELPPLKRDALLTVLTEHNIPSSQQQIAVGITDSVAMIEQWQEDNWFESAIKGVIQWYQDTTRNGMLGFVDVQTILQKVATDRDKQQVILDLITLIWRDTLMVNSGITVANRLHFNNILGEMGEVVRKYSPQQLLAASQLTLETRHMLEQNISFQNIVEQLTIRLVQVLSIS

#### region 7 ####
complement(2085799..2087217)       PROPHAGE_Escher_MG1655: IS150 transposase B; HMPREF0538_22044; phage(gi16131429)     2.41e-47            LactobacillusreuteriSD2112MYPQSWKSTLGVFYMTKISVKTKLKAVEEYANGNVTLASVRHKYGIAEHDFQIWVGIYARFGKGPLLNPPKVTGDFRLNLVKWKQENLASISETCIHFGYRSPGSVYQWECLYNKQGPQALLRLRRGRKPKNGQTTRQESRQASSAPRTEPNLTKRKLIVKDTTRCLKKIDSLEKASKKELAQVIYDLKAKYLLKDLIDALPISMSTYQYWQNRFEHPDEDEEELKAVIKGLFNYYQAEYGVRRLSTQIRDYYRLIGKKTPNHKRIQRLMHEMGLKCIKYNRRVRKYDSSKGPNGKKAKNKLNRRFMSNRKYQKMVCDITELKAHDGRKVYLEIIKDLATNQLLTWSISQHPNLQFALDPLQQLLKQLPHTGYQLTLHTDQGWHYQHRAWRKLLRQGNIRQSMSHRATCLDNAACETVFSKLKAEIDPDTSYRNQEELSQAINEWIHFYNERRIQTKLGNQTPLQYEQNLVA
2087300..2087704                   hypothetical protein; HMPREF0538_22045                                               N/A                 LactobacillusreuteriSD2112MGLILMNITFTDQAIERLQRYELSSKKILLDFDDGVGPFSAVGGCSLDGDYRLILVKEDLDTPDYNEKITSNLGDVFIKDHTAVQFDDEMEVRFNPRYFTMPLVSPKRVLTDNLEVLDLSNTDLNSQIDRAHDC
complement(2087861..2088130)       hypothetical protein; HMPREF0538_22046                                               N/A                 LactobacillusreuteriSD2112MTIIKIIRKYVEGMIFNDIISILLFCAFAYLFNFNFHRDNYAYAIVMFIGIMVFYGDFYHHLPINWKLYILLIATFYGLYSQSSWGDKH
2088182..2088358                   hypothetical protein; HMPREF0538_22047                                               N/A                 LactobacillusreuteriSD2112MILLELMKAVLTVKKKAMRREIKLLTEENQQLRRYTLLASIGILLSMMIGLVRMVQKN
2088387..2088881                   acetyltransferase, GNAT family; HMPREF0538_22048                                     N/A                 LactobacillusreuteriSD2112MELQYRKATLEDLPKIVEIYNQIIPSRLATADLTPITVDARKEWFEAFDENHPIWVIEHQNEVLGWVALEHFYGRPAYNHTSEIAIYLDQRLRKQGVGTKTMEFIIGQLPNLAVDTIVAYIFGHNIPSLKLFKSFGFTQWGLLPQVAELDGIKRDLVILGRHFK
2088913..2088924                   attL                                                                                 N/A                 AAAAATAAAAAG
2088979..2089758                   PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0538_22049; phage(gi588498272)     4.44e-25            LactobacillusreuteriSD2112MTYKHLTTRELTLIANFWHQGTKAYQAAKLLKRSQETIYRVYRFLDSGKTIAQYLKAYQRNKQRCGRKQAQLAKDEISYINEQVKAGWTPDTIIGRAERTISCSMRTLYRMFARGQYNFAVQQLPMKGKRHPNGYVERRGKAGHLGRSIYQRYHDFPHYQHEFGHFEADTVQGKAHRGAVMTLVERQSKVMIVLNVHRKTDEAVNYHLDKWLSKMPRHFVKSITFDNGKEFAGWREIANKHDLHTYFVGGWSAQSTRPE
2089700..2089948                   PROPHAGE_Neisse_MC58: IS30 family transposase; HMPREF0538_22050; phage(gi15677611)     1.99e-07            LactobacillusreuteriSD2112MTFILILSEVGAPNQRGLNENNNGILRRDGLSKRLDFRNLPDELITQLMHKRNTIPRKSLHYRTPLEVFLSHVTDEQLSTFF
complement(2090123..2090506)       putative alkaline shock protein 23; HMPREF0538_22051                                 N/A                 LactobacillusreuteriSD2112MTTTTNNKTIDEQLTFDDQVIEKIAGITASKVSGILSLDGNMFSELADKVTSGSNPTKGINADVGEKQVALKMEATIEYGKSAPEIFKAVCSEVQHAINKMTGLNLVKFELHINDVKTREEVEKDTK
complement(2090524..2090715)       hypothetical protein; HMPREF0538_22052                                               N/A                 LactobacillusreuteriSD2112MKLATIGVILGSLISISWIMWGFFPMIGILLAVTILGGIGYILDAKGYSLNKLAIKMLDKFAN
complement(2090731..2091276)       hypothetical protein; HMPREF0538_22053                                               N/A                 LactobacillusreuteriSD2112MAAWKKWWVSFVMMLQVIVGIVVVSLWFYRDQTWTIPVNDWLYSPIGQSFSAGVAVFLIIVALTVIAIAVFRPTTTKQMTIARDGANKVQIDQHAVEHSLTTSIAKFDLYNPVINLKMHRNNHKADVTVHGMLSKRTNPKLIHTVLLQTIKENLKRDFDIDLNKLHIKLSPYSNRESVNIV
complement(2091458..2092987)       putative gluconokinase; HMPREF0538_22054                                             N/A                 LactobacillusreuteriSD2112MNYLIGVDVGTSSTKAVLYDQDAQVITQANYGYELHRNAAGMAEQKPEEVINAAEQTIHDVATAADLSTGKLLAVSISSANQSLLLLDKNKKPLSRLITWADSRAQRAADNLKMMTEGQQLYMKTGVPVHPMSTLTKLLWLREDEPDLFNRTAYFADIKAYLFYRLFNEFKVDMSIASSTGLMNLKTCDWDDQALRVAGITKDQLPEIVDGTTQATGLVPEAQEKLGVPADTPFVYGAYDGALSNIGVGATKQNTVAITIGTSAAVRVVTDHPVIDPERRLFCYAINKGLWVVGGPLNNGGDVYEWAVKHLVDSSAVKNEQVDPYTLANHVIEGVPAGAHGLLFHPFLGGERAPLWNAKARGSFFGLSHIHTRADMLRAVMEGISMNIATVFQAVRALVGEPASVTATGGFARSKVWRQMLADILNCPVNVPDSFESGCLGSVVMAMQGLGMIDSLDTPQKFIGKVSSYQPDPAAVKVYQRYTPLFQQIEDMLAPAYSEIAKLQERQNN
complement(2093038..2094057)       PHAGE_Entero_DE3_NC_042057: hypothetical protein; HMPREF0538_22055; phage(gi100002)     7.68e-20            LactobacillusreuteriSD2112MMNKQMTQHTTIADVAKAAGVSVTTVSRIINGRYDKMRSATRKRVEKAIKDLHFVPTASARQLRQTHSHVVGILVGDISNPFSSLLAKGIDDVLQQAGYDILLMNTNNSQENESRALQRLYQQRVDGIIVQPNSRHFSQFAPAIHNDIPLVIVDREVDDQPSTVGKVTSANRDACYNLGKILYQHGYQNILTVSAHFAEASGQIPRIAGLKVAAADNGLSYHNIETRGHDRQWLAKTFLQQLNKLKGKTAVVSLMGPILFDLLAIFKELNLSFPDDLGLVSFDDWEWSQYVANGIFLLKQDMELMGSLAANKLLTQINQQSTISSTTLLPVEIIARQSL
complement(2094140..2095276)       gluconate permease; HMPREF0538_22056                                                 N/A                 LactobacillusreuteriSD2112MLGKLVSDAGGGYRIATTLINKFGRRWIQVAVILASFIIGLALFFEVGLVVVLPIIFIIAHELDMPLMYLGIPMAATLNVTHAFLPPHPAPTAITDILGANLGHVLLLGILAAIPTIIIAGPVYNWVLQKVYPRVYRKNIDISVLGEYKEFKLEETPKFGISVLTAMMPVILIAVATICSFIFPKNNPVNEFIQFIGAPDLAMLLSLIFAIFTMGLWRNKKMEEISTALADSIKQISVMLLIIGGGGAFKQVLVDGGISKYISGLFAQTNISPILAAWLITALLRMSLGSSTVAAMTAAGLVVPMAHQFGGNSIMATLMVLSIGAGSVFCGHVNDAGFWMIKEYFGLSLKETLLSWTTLTSILALAGLGAVYAISLFV
complement(2095381..2096646)       PHAGE_Lactob_phiPYB5_NC_027982: putative integrase; HMPREF0538_22057; phage(gi937456185)     7.39e-119           LactobacillusreuteriSD2112MQQLIKDADTGLYDAVLVYKLDRLSRSQKDTLYLIEDIFQKNNIHFISLSENFDTSTAFGKAMIGILSVFAQLEREQIKERMSMGRVGRAKSGKIMEFNNPAFGYEIDGDNYKVDPLRAEIVKRIYKMYLSGTSINKIKETLNSEGHIGNKKNWSDTRIRYILSNPTYLGKIRYDGKTYDGKFSPIIDEETFNKTQNELKERQTATYKRFNMKLRPFQSKYMLSGLLRCGYCGATLFVNSYVYNGKRKLRYNCPSTYKSKQKTRTYKIMDPNCPFKLVYAKDLEPAVINEIKNLALNPQSIQKPVKKTPDIDVEAIQKELTKVRKQQQRLIDLYVISDDVNIDNISKKSADLKLQEETLKKQLAPLEEPDNDDKIVAFNEILAQIKDIDSLDYDKQKFIVKKLIKKIDVWNDNKIKIHWNI
complement(2096918..2097685)       PHAGE_Lactob_Lj965_NC_005355: hypothetical protein; HMPREF0538_22058; phage(gi41179221)     2.32e-21            LactobacillusreuteriSD2112METRELLNNYYDWLKKKYVIKRHATSDEIITPFLDNINDNISVYVDHLSDKQILLNDDGYTLNNLEMMGINLTDTRKRLLENICKQFNIKIIENSVLAINGTEQDFPVMKYNLTSAILRINDLLFTKKANVENMFYDDVLNYLQDNDFGGLPTTMLGHSGLTYDFKYAIPQKGENPLKLINMQNNISSSQMMKEAFTFNDIKQNSSFNYKDPQYIVIFNDNEKKVSERSQQIADAYGLDLIPWNNKKLVESLKVS
complement(2097721..2098149)       hypothetical protein; HMPREF0538_22059                                               N/A                 LactobacillusreuteriSD2112MKNKDYNYLHNLPKSTDKNHLFCAPFGKQTSFKGTGTLDPNENFRVVQNRKGHRRNNNLTYILFYKQNNIMIRIDINGQRHEGIETPHVHIFDETHNNGLEAIPLSKLPNYDTTDDVVQSLCEFLKYNNFNTKGLMISPSTA
2098175..2098187                   attL                                                                                 N/A                 GGCTTTTTTATTT
complement(2098207..2098728)       hypothetical protein; HMPREF0538_22060                                               N/A                 LactobacillusreuteriSD2112MKKIGLICTTLLAGVSLAACSNQQSKSTKTSNDSSLKAENSSLKKQLSKKHRQNKNKRSSSNQSSTVSSAYSSNSQQSSTRVSSAQHTSSTSQSNGGQQPATQPQQQQAAQSSDQRPDDVPANFKEYTSYTTDGHKMTQWNDAGSYCGDPDTQYETNIKMNQAAERIANGQVP
complement(2098777..2099205)       PHAGE_Lactob_PLE3_NC_031125: RecA-like recombination protein; HMPREF0538_22061; phage(gi100035)     3.86e-23            LactobacillusreuteriSD2112MIYQQTEEACDYLLEKAKEYHIDVKWKHFSPTTPPGSSYEYRRVVMNLDWHRPEELIFQLAHELAHVIHGDTGDVVFYHASFTGKESVEYKANVGAVELLVPFYCQGTEIQCVNSTNFMQSFHVPHYLASIVSEKIREYYKN
complement(2099202..2099510)       PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; HMPREF0538_22062; phage(gi100029)     4.42e-30            LactobacillusreuteriSD2112MNTIDRIKELAKKRGWSLQRVAEEAGIGINSIYRWNSKTPSTQSLNKVAKVLGVSADYLLGETEKKKTADLADKDTVFTYEGREIPPEDLEYMKRLLRGDDK
2099733..2099939                   hypothetical protein; HMPREF0538_22063                                               N/A                 LactobacillusreuteriSD2112MPVENELEKATADVERNIKMKLLERDMTQAELSRLLNINRQQVNRAIKGDNSPKAIEIRKKIYRVLNM
2099951..2100718                   PHAGE_Lactob_Ldl1_NC_026609: antirepressor protein; HMPREF0538_22064; phage(gi764162130)     1.87e-110           LactobacillusreuteriSD2112MQQLFNFNGQQVRTVTINDEPYFVGKDVATILGYSNTRDALSHHVDDEDKGVAKLDTLGGRQNQTIINESGLYSLILGSKLPTAKEFKHWVTSEVLPSIRKHGAYMTPQTIEKALLSPDTIINLATQLKEEQEQRKHLQEENEQMKPKALFADAVSTSNSSILIGQLAKILRQNGVNIGQNRLFAWMRKNGYLGTRGSNRNVPTQRSMDLGLFKTKETVINHSDGHTTVNITTKVTGKGQQYFINKFLNAPVIEA
2100730..2100858                   hypothetical protein; HMPREF0538_22065                                               N/A                 LactobacillusreuteriSD2112MEIINVDKDGNIIPDLSKKTIPKDLSDVIVEMIYEARSKEVS
2100858..2100980                   hypothetical protein; HMPREF0538_22066                                               N/A                 LactobacillusreuteriSD2112MLGLAIPWLVIIGCFLIGAIVNVIEGEKLNVLKPKYRKKH
2100995..2101201                   hypothetical protein; HMPREF0538_22067                                               N/A                 LactobacillusreuteriSD2112MSTKKLNKFVNLSKKLVNFKDYSVEEQEEFVSNAIAIYRNNNLGSSAITTQVARFFLFLVDPRKAVIE
2101198..2101377                   hypothetical protein; HMPREF0538_22068                                               N/A                 LactobacillusreuteriSD2112MTKIINSKLLAMLMGAWITYCAGVGDYGGAVFLLFFYSLMLWDLNAKKATGSDTSDGNK
2101413..2101643                   hypothetical protein; HMPREF0538_22069                                               N/A                 LactobacillusreuteriSD2112MNEYLKNRLSRIHDDLYLSLIVIDYALSNDQISIGLAHELSRLLTQMDRGSHLKQDLKEAEAEAYRLADEGGLIHE
2101636..2101908                   hypothetical protein; HMPREF0538_22070                                               N/A                 LactobacillusreuteriSD2112MSKENITIERWKTQFKETAQHLANELIAEAKTKNTYGEATAYIRKISQQAYGDITDPEDRAGMAVNDAVCSLAVRRLHEEERSLPINKED
2101912..2102664                   PHAGE_Lactob_LBR48_NC_027990: hypothetical protein; HMPREF0538_22071; phage(gi937456720)     2.86e-52            LactobacillusreuteriSD2112MAEKKEAPKVETPKEKKENLSLAEKLNRAISDIGPVKKDGNNGYQNYRFQSEAAIKAAVKKVIGLNGFDIIPSYEITNQRDIQGRKGTVNHIVDVIGTFTITDGRKDQDIVGKMPGSGMDTGEKAVAKACTSAQKYFYKQLFNISDHEEDPDATNSDIGATYQQNMQQQTNRRPQQRQQSQQESPQEIKERLDNALKMLADMQHTTPAEVKSALIKEYENEPAYKQNSNLALLGGATAMYKLLRKEQKAG
2102667..2103347                   PHAGE_Lactob_CL1_NC_028888: hypothetical protein; HMPREF0538_22072; phage(gi971752656)     2.90e-63            LactobacillusreuteriSD2112MYGKLISTQGNVVKIQLDEEMDINKLIKFANGKQPTVELLVDDGRHITPDQRKKIYALLGDYCLYTGYSLNEAKLFFKSMIADFFHTEMFSLSDCSETVASQMITTMLEFFFFEDIPFHTKIWDSLPDDFPRVMMCIKTKRCAICLKEHADIHHVTAVGMGRNRNEINHVGMYIEPLCRVHHTIFHTIGAKNFMAKYHIKPIKVTPEIAKELHLGKQKSEELKNAE
2103337..2103765                   PHAGE_Staphy_phiETA3_NC_008799: ssDNA-binding protein; HMPREF0538_22073; phage(gi122891801)     1.02e-30            LactobacillusreuteriSD2112MLNSCQIQGRLTAEPELNTSGSTQVVRFTLASQRSFKNKNGDYDADFIRCTAFGQRANFIAQHFHKGQKMIVEGRWQTGSYTDQQGNKVYTNDLVVSNTEFDETRSQNNQQQNNAQNNNQPYQGGYSQQDAPIDIGDDELPF
2103778..2104608                   PHAGE_Lactob_LF1_NC_019486: DNA replication protein; HMPREF0538_22074; phage(gi418489431)     6.86e-25            LactobacillusreuteriSD2112MADEFEGSRIFLNVPVFAARDKDLLKKTKSLLLLGEIVSMLNTTGKFFMSNKTIAKRLDCTPQAVNNYLQLLEEKKLIVRTKVHDKNTNAIVGRIIKAGPALINARLLGLTTDVGEGSKQAFKGVVNERLYKDNNLKEQYKRTNTNSASHGNAQSVSQLEKEFEEVWSKYPNKKGKKQAFNHYKAWRKASVKHTNEYLLERLKKYLTYCQQNNWYHPMNGSTWFNGRFDDELEVDNPKPANKYEQEGYYDDYKDFVRDDGKGENLLDGVSDDELPF
2104624..2105421                   PHAGE_Lactob_LF1_NC_019486: DNA replication protein; HMPREF0538_22075; phage(gi418489432)     2.25e-51            LactobacillusreuteriSD2112MAGITFSTAQRDAAKHLKEFYGIDVNDPEQLAKMEINVRNYRKRVERSFNKQNVLYKAGTYINSSLFNGNQRIDFLFTDWKPDKQKNVVKAKEVANRCFLLAKKMFAEPQKALLSGKPGVGKTSLAMAMLNALCKKNLTVMTVSTLELARLMQKRIENKDVQDKLDYLQNLMETVDVLLLDDFGTEGSMKNESKSVRQDLQEYLFRIANSRIDLNRNEVVNSTIITTNCSTKDLETMYNPKLISRLLPHSSDNIVDFTGLEDLRV
2105424..2105576                   hypothetical protein; HMPREF0538_22076                                               N/A                 LactobacillusreuteriSD2112MNIICPACKGSGIYLNSKCYVCGGCGVYRISNDLIRMMYHNGDLKEKMGA
2105580..2105840                   hypothetical protein; HMPREF0538_22077                                               N/A                 LactobacillusreuteriSD2112MDNAIFNKVEFKGAVEKAQLKKNGEVTIQLTADIDDIDMNTLSLVMDSNGGVQIKLEGNQTELVDEDEESDGQIDLLDQEEDEDEY
2105830..2106351                   hypothetical protein; HMPREF0538_22078                                               N/A                 LactobacillusreuteriSD2112MNISDILTTDDFIDTINGFPEVAAKKSQTYGIIIYRTKEDMKRDLKNGKELLWIASIDPKVKADDMYSNEALNVEEEEAYLDIPFITRKRIDDLLVRYINTPLPARDEWPGEERKESLRHLLEFERKNTAKKSPEYTRGMFDGLKAVFNIMDLRSDYEATMKPKRGVEIVLSD
2106364..2106921                   PHAGE_Lactob_Ldl1_NC_026609: hypothetical protein; HMPREF0538_22079; phage(gi764162136)     9.23e-25            LactobacillusreuteriSD2112MWDIRLWLCDGGTQPMNHFSKKVEVDGYKFDSEKEANFYLRFVKTCGKRYEVHKSFELISKFPVGGYKQRSITYAPDFVVYGADGSIEHVYDVKSGINQRAVDTAAKIRFKLFSLKTGLPVEVVVPRKNDFKMKLYGFTTNRIQDPHGRYDRHGNMKQKKNGEPMYDYYDVHKSVNYDIRDTIGW
2106998..2107447                   hypothetical protein; HMPREF0538_22080                                               N/A                 LactobacillusreuteriSD2112MKIPEEVTEALNYLEQKGYVSQGDLRMPEDILPPDNKHLKAILAFRKQTDINDEIRIKWWIEQTREHLIAQGIVNPFEQAYVLRKLGTAQDAILKVTRLKQFEFEHRIAFLFRGKRSYARKKIGDVEALLRYKNVRFLLEDMKRRYKNA
2107440..2107718                   hypothetical protein; HMPREF0538_22081                                               N/A                 LactobacillusreuteriSD2112MLSFDQRKLIAQLERDMKELGLTVDYSEITTHNCIVFEAEGYNRIIIWLSNGCFLSLSLSNNPQFAKVAPKVLYIANKFMENYRKIDMEVTA
2107715..2108086                   hypothetical protein; HMPREF0538_22082                                               N/A                 LactobacillusreuteriSD2112MKIKEALNFINATTTVRAKVDGDYLNVFSKDMISDNWFLKLNTKAINWDTVLKHWGGLTDVAPEDLARAMDVIQRLLDTPVNERFPEKKYRLVAKRETSFHPKYVSNIITGFDELVFDPKFQE
complement(2108101..2109231)       PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0538_22083; phage(gi588498272)     5.33e-26            LactobacillusreuteriSD2112MTHLNDTMPTNFLATHRKYAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELKRGTVRQIRRQKFNGKTYDYPYHIYSYEAGQNIYLKCHQRSGRPRLYYRSKRFLQLADQLMLGEFDEHRYSPQAAIYKARDLMSDDSLIPKSVVTLYQWINDGVLRTSNLDLFEKTKRKHHQSHPQAKKCLGPNIAQRPQVADQRSEIGHWELDTIQGHKDGKDSVVLVMTDRFSRVNITRKITSKTAYAVNHFFVELRQKLGKNAYYRIFKTITSDNGSEFSELTRVHDHVFYTDPYSPWERGSNEINNRFLRKEITKGQAINDYSSAQIIATNDWMNHYPRAIFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI
2109293..2109490                   hypothetical protein; HMPREF0538_22084                                               N/A                 LactobacillusreuteriSD2112MAFLHLPPIRWLTSFYNPPLVFDLSKDEKEARIFSEKELNQIKGREPSLAPAIDSMKEEVKDDED
2109480..2109722                   hypothetical protein; HMPREF0538_22085                                               N/A                 LactobacillusreuteriSD2112MKIKAIMIMTPKLRKDLNAAFLGCKRINPIKRTRKRQIAKAKHMMAWHDHTSYEWSQWWHSKARKPKRWKNDERRKESIR
2109691..2110077                   hypothetical protein; HMPREF0538_22086                                               N/A                 LactobacillusreuteriSD2112MMNEEKKALGEYLYESLENDAYLKKLETILTEQFGRKQADQPYWISNKQLHDLLRFADLLSKSFNKAGSLEQKLRAMAIMDKLKFLYPEHKAVEFFKRSVEAQYNGKPFITELELAKFNRESEHEGEE
2110190..2110384                   hypothetical protein; HMPREF0538_22087                                               N/A                 LactobacillusreuteriSD2112MLTTQARLAMRNNQSVRLVGDLYHIIDIKRVNGTSRMIATIKKIGLAEWKYKPIEVDIECLERA
2110488..2110631                   hypothetical protein; HMPREF0538_22088                                               N/A                 LactobacillusreuteriSD2112MIKDLLKYIPLVCFTAIIITEILCGFDKHMIGYAVFGLFVLLMFGAV
2110663..2110854                   hypothetical protein; HMPREF0538_22089                                               N/A                 LactobacillusreuteriSD2112MTNKKIIALYKGEEFIDAGTYKEVSANQHMSVRYLRSIKSKTPKRLAHYENEHYRNGMLIISL
2110964..2111479                   PHAGE_Lactob_LF1_NC_019486: phage transcriptional regulator; HMPREF0538_22090; phage(gi418489438)     1.23e-16            LactobacillusreuteriSD2112MGLFPEFNEKKTIKNVRNFFNNDKKYQRICRNAWMDGIKAQVNDVTGIHGSRKGNGSEKMMIYYAECARAKRAVEKAINACSVESQDILNWHYVKQLTVVETKLHINHHLGHSTFNDADEVACLEFAEACDRISMQMNCNLEILPLFLNFDGDDEKAGTNQEQNGNKTGTK
2112045..2112124                   tRNA                                                                                 N/A                 GCTGATGTCGCTTAATGGTAAAGCACCACAGTTGTTTCCGTTTCAACATGGAGAAGGCGGTTCGATTCCGTCCGTCAGCA
2112304..2112783                   PHAGE_Lactoc_bIL311_NC_002670: Orf21; HMPREF0538_22091; phage(gi13095679)            6.51e-32            LactobacillusreuteriSD2112MYDVFKVVNWLRVRNNADMRQNPNIEELSQMKVMKLLYYIQAASLSISGKRMFDNDIVAWKYGPVVEAVHRKYSGCRGIVNSNYPITPQDLEDYKELQADEQASSILNSIYDVYGYSSAYDLMRQTHSEKPWQQTPHNRVIKDKYIKDFYSGVFISDEN
2112773..2113207                   hypothetical protein; HMPREF0538_22092                                               N/A                 LactobacillusreuteriSD2112MKINNSYSGPKFSKTVKIKHHIDRFAFNFSFLTKDSKYNLDSRSKTINKKVRLKLLDRITQLSQDDRVVILNRDKREGLEKMPENKVRLSIHPDFKKSKRYDECDDDFWVFRLGDLGRAIGKINENIFYIMSIDASFDQYNHGS
2113228..2113240                   attR                                                                                 N/A                 GGCTTTTTTATTT
2113753..2113932                   PHAGE_Lactob_JCL1032_NC_019456: hypothetical protein; HMPREF0538_22093; phage(gi418489174)     1.06e-11            LactobacillusreuteriSD2112MAELSEARRKANKKWNEKNKDKQRVYLYRSHAKKFVREIANEDDLKELRKMINERLSNA
2113925..2114203                   hypothetical protein; HMPREF0538_22094                                               N/A                 LactobacillusreuteriSD2112MHRKSFKNVKDHSLIIDDGWFNAMYKDKIDDHLGMEAEISFLKQPDSIDILLTNLYYPNMRQGTREQDDQQTVFKLSKENAIKLRDYLNKVL
2114447..2114617                   PHAGE_Lactob_phiJB_NC_022775: hypothetical protein; HMPREF0538_22095; phage(gi571797856)     1.33e-11            LactobacillusreuteriSD2112MVSEAQQRAKKKWDDKNKDKNRIYRYRSYARKFIRDLATDDDLKELDKLIHKRLND
complement(2114643..2114882)       hypothetical protein; HMPREF0538_22096                                               N/A                 LactobacillusreuteriSD2112MAVKIFVAVKALDSQEARASLGSAYFLTSIKISNKINKVKFNEFMGITSSQFTWEVIPIFCCLADPKEFYGDAYVFKAK
2114838..2115695                   PHAGE_Lactob_LF1_NC_019486: HNH endonuclease domain protein; HMPREF0538_22097; phage(gi418489440)     1.26e-142           LactobacillusreuteriSD2112MRVKRLYCNKDLYGHTYIRKGMSILKPTKLTFINGKPTLVSYDKIVRKDNDKAYNFHRNVEENDYVKFYHSTEWKHKRQEILERDYGLCQRCGMDAELVDHIIPSKDDWIDRLNNDNLQSLCRGCHKIKTKREWMKHHKGLERYMNINIVCGLPASGKTTYVKQHMTEHDLIYDYDELMQALTGLPLHQTNYDVHDYVSLFFDQMLRKLKAEQTFNNVWIIKTLPDKRIDTLLSNYHRINHIVIMTDPNVCEERLRERKERISFQKILNGFKTADFTGYRVVKNG
2115879..2116346                   PHAGE_Lactob_LF1_NC_019486: phage terminase small subunit; HMPREF0538_22098; phage(gi418489384)     2.70e-65            LactobacillusreuteriSD2112MARKQKLLSQSTGHLRVVEQEAKYKAEFMAADGLPELQKTPPAHLDKVAKAEYRRIIGSIGKLPLRNLDRSELELYCTWYSIYKDASVQLNKEQSKKRKNIAKINNAIKTIDKATRAIKGLASDLGLNVNSRLQMNMPQTDKEEHQSLRDKFRIS
2116343..2118052                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; HMPREF0538_22099; phage(gi418489385)     0.0                 LactobacillusreuteriSD2112MMNYAKDYAEKVVAGKIIAGKKVILAAKRYLNDLKKADNDDFEYFYDNERANKVIQFMEILPDPKTMRAYPLADFQRFIIANMYGWWKKDKPSERRFRKGMLSMARKNGKSILISGIALYEFLMGNSPEFSRQIFCTANDKKQANIVFNMIKKRLNALRSSDGDTKRGTKVNRDLISNLDDYSYVRSLSKETGTVDGFEPHVGIMDEYAASKTTEMMELLESGQALLHNSLIMIISTAGFDLNVPMHTIEYPYATKVLKGEITDDTYFAYIAEQDNVSEVDDKSTWIKSNPILSVPALQDQVYGYLAKRWKEAKQKGTKNSVLVKNFNMWRQAEEDSYMDIDTWNAAQIDPIDIDNQRVWFGIDVGKSSDLYAISWLIPQEGYWYADSYAFVGTKYGLEAKIKADRLDYVRLQGMGQCEITKLESGVIDVERVYEWLDGFVREHNLDVQAICYDPAQYGTLLTQIEKGHPEWQQISVRQGTLTLSMPTKQFRDDVLDKRVRHSGNEILTGAMANAILKSDNNGVRIDKNRYSNKIDAADALLDAYAICFRENIDDYLTDEDVFNDDFGF
2118033..2118395                   hypothetical protein; HMPREF0538_22100                                               N/A                 LactobacillusreuteriSD2112MMTSDSKKVVQSESRYDKYILCADWHEMNKRWSTDISLFTSFYGAVTVNQSDHLICTDIEVRHYICPDIVDGIKKVNELEVDASSIQLLSVEELMSLINTFKMRICITRHPKLFSNKCGD
2118558..2119817                   PHAGE_Lactob_LF1_NC_019486: bacteriophage portal protein; HMPREF0538_22101; phage(gi418489387)     0.0                 LactobacillusreuteriSD2112MLFHTEKRDWAQDYIDQGILPGVSNMPSYSGIGALRNSDVLTAVSHVASNVARFPIVILDDDKNAVKNIKSVDYLLNKHPNDMLSAYHWRFLMTVNAILTGDGFSRIIRDPHTKAPLEIQYFPPSQTYIDDSDVTNIKYEFTPINQKGGGQTIVVPAEDVIHFMFFTYDGIHGRSPLLSLADEIGLQDDGIKTLRRFFKSGLKGGLLKAKGKLSPEARLKTRKAFEYAQANSNAGSPIVTDDTFDYSPIEIDTNVLQLINSNNYSTAQIAKALHIPAYKLAVNSPNQSIKQLNEDFITSDLPYYFKPIASNLEMTMLTDRQRHNCHIEFDTRKETGMSMDDVQKGVTNNVITPNEGRVRMGLVKSDNPDLDRFQSTLNTVFLDKKEEYQKQSTAKGGGIDDKRLGNSTVNDANSDENGN
2119756..2120409                   PHAGE_Lactob_LF1_NC_019486: phage head maturation protease; HMPREF0538_22102; phage(gi418489388)     4.63e-79            LactobacillusreuteriSD2112MTSDLETRQLMMPIQMRTATDEDDEPVIEGYAAKYNKPSEVLGGFTRFIEQIAPGAFDDADMSNVVATINHDPNQVLGRSGVNMTLSSDSIGLKFTVKPTDTSFARDLIANIKAGVINQCSFAFTVANTDEAQDWEESDQDGVDYERTIRQIDRLFDVSVVTTPAYPDTEVQVGQRSINMVKQMQSQENRDATDQKRKKMLRELERQELLKTLEGGN
2120410..2121546                   PHAGE_Lactob_LF1_NC_019486: phage capsid protein; HMPREF0538_22103; phage(gi418489389)     0.0                 LactobacillusreuteriSD2112MFREKIKELLAQKEGKRALINEKTNEMRQLLSNEDATDEDLTRAKSLRSEIDAAEKEVRSIEDDLKLYRKAAKGNPAPDPHKRSQNNEDENEEKRNFNAYLHQEHRDGTTGITSSDVVATIPESILYNPENEVKSVTDLSQLVTQFQATTASGKYPVLKRATERMNSVEELQKNPELAKPEFEEVDWKVSTYRGAIPLSQESIDDSAIDLTSLVATNANEQKINTTNFAIAAVLKAFTAKSVAGESVDDIKHILNVDLDPAYNKMIIASQSFYQYLDTLKDKNGQYLLHEAITDGSPRTLLGVPVTVVEDELLGAAGEAHAFIGDLARAVLYANRKDIQVRWVDNDIYGQYLQAVTRFDVKAADKNAGYFVTPSAASK
2121688..2122101                   PHAGE_Lactob_LF1_NC_019486: DNA packaging protein; HMPREF0538_22104; phage(gi418489390)     1.53e-41            LactobacillusreuteriSD2112METDHTFSSDKQFFANLKNYCKIDQDFDDEILKIIVDAAALMIARAIKWESKPADYSDEPRFKIALMKQVKENFYERGITADSYRPVLSSGIDGLINQISSEVNTDETTEHDGTDNILLSPNGDQSGNSSTDQGSES
2122004..2122357                   PHAGE_Lactob_LF1_NC_019486: head-tail joining protein; HMPREF0538_22105; phage(gi418489391)     8.28e-50            LactobacillusreuteriSD2112MKLRNMTERITFYSVQMGINPETHRPIKDQKVKEFTVWAEVPKLSVREFVQNSSNVGFRKESPTFLIAFKTRKEIQSNWLINWRGKWYEITGMDPDYAKQDLTKITAQEVVQNGSDR
2122341..2122715                   PHAGE_Lactob_LF1_NC_019486: head-tail joining protein; HMPREF0538_22106; phage(gi418489392)     7.81e-51            LactobacillusreuteriSD2112MAVTGETELIANLTKLEKTEEKKARKATRDGAKVFQEKLKEVTPVAKSGDHSNMTPLAEHTKHGNLKTNDGDYSMDVGYDKEKGWIAHFPNAGTSKQHPQHFIEKARAQSKKEILAKYIEDLKV
2122712..2123131                   PHAGE_Lactob_LF1_NC_019486: head-tail joining protein; HMPREF0538_22107; phage(gi418489393)     1.95e-52            LactobacillusreuteriSD2112MKTPEMQVADYLTNDERLVAMMDELRQDKLSYVPIFTSTPDDPFIKASSAPWIRITPIPGDDAIYSDDARFFEYPRVQVDFWIREENDDRLMNIQERIYETLHSHGFERYYKNSYPDPDLDNCIMVTANFEGFEERNDI
2123131..2123760                   PHAGE_Lactob_LF1_NC_019486: major tail protein; HMPREF0538_22108; phage(gi418489394)     3.08e-96            LactobacillusreuteriSD2112MGTPNAKVAKFGASNFEYGVLDENEKIKDTRKMSGLSEVKLELTNELKTLAADDGPYLVLSGGITEAKETINLYDIDSIMKKDLYGIDIQNGTEVYTKNLVPNYVATMFRTKLSNGKHCWVGLTKGMFSLPGISIKTQDGAPDPEADEIEGNFVPRGDADTGTILLIGREDNEEFDFAKFHAMVFGEEAPVTDPTNTKDTKPETVVDKG
2123813..2124154                   PHAGE_Lactob_LF1_NC_019486: hypothetical protein; HMPREF0538_22109; phage(gi418489395)     2.39e-22            LactobacillusreuteriSD2112MPLKLKVQLEGKDSDYERKRPPMLENLLDALKIQRLETEMFGGDKGPTDEQNAKRMDLYAEFASRFWGQGLTKDDILKGVSAVDGFNQMVTAVNLTLGYNAEEDNKTKKSAKK
2124163..2124333                   PHAGE_Lactob_LF1_NC_019486: hypothetical protein; HMPREF0538_22110; phage(gi418489396)     2.97e-18            LactobacillusreuteriSD2112MIDDSIKSLSDFIKNQISQGYTWNEISKLTLADLKLMDYVFEEKQTTIDKAFPFLF
2124350..2128852                   PHAGE_Lactob_LF1_NC_019486: phage tail tape measure protein; HMPREF0538_22111; phage(gi418489397)     0.0                 LactobacillusreuteriSD2112MTQSLGHLAATVSLDINPFKAANGVLKAQIKSTANALRAQEAALKASGGSINNMRAAYATMSQQMRNYNAQLQNAKKAMDDTTRSKQSRAKAATQYNKTSAQIEQLRGRMQALNRDIELQSNKWTQLANRTQHFGNVATNVGSKISGVGRGMSTYLTAPIAAGLTYSAKKLIDFQDQMTKVKNVIRTSGESAAETNAAYKTMTADARKYSDEYGVSQQKIAAGYQDLVKRGYTSKAAIGVMRNELKASVATGDDFNDVIKVASQAMESFGLATDKAGRPIKNAAVMQRRSTKTLNELAYAADATSTDFQSLGVGMSYVGSTAHQAGFSLSETASAMGILSNNGLEADKAGTGLRKVINSLITPTANGQKALASINLSTKDFLTKSGKLKSMSSIFKTLNDHMKGLSGHQKNDIFHALFGTTGQQAGAILTENANRLRELNKEVQNSAKRDYIGDLSQKNLQSPKAQLAIFKESLTNAGMDMAKYVLPAVIPLVQNISKLAHGFGNLSPAVQKAIVATTLFTAGAGPLFLILGKLTSGAGKTVLAFGKLAAGLGRAQTAMKLGASGLDVIGSAFSKSTFRAAKFGTTMTGAGGRAVQAANGVGAATVALQGTGVAAGEAGAATAAAGVSLGTVAAVAGVATLAIAGGITVWELWGKKAAESSQRTDRWGSDVGAAADKALGKFKNTSTGIQAALTDMDTATKTSTKSMADSFDREFSQMESDARKHLEGVKKAEKDMSPEVAAAVDREAQHEKDTMNKILSNADQARTRANTILQTSNKNIASLSDTQRVMLQNNQQQIVDDELKMWSLTGNQRKKAMAALNNDVANMSHRQRNTALADLRTQSDNMRNEYAKQENSLKRQLKAGTINQNEYAAGMRANKKTLQDYVDKASAEYIRLARANGQSTSRIKEDMQAEGLSYSAGMKQLDKLAKNAEKNSKSIAVSLDGLKGKTKDAAKMWNDLVFDPKTGKVRTNAQEEVNKAVNSKDQWNQIKLLKKEGKLSTNAQQMVAAALIENGKWDSMSWKEQKAWLKDGFSETIVQALEKSGEWNNLDLKTKEAIVKAKGKQEMADILLESGAWNSLSLKQQEAVITNKATKPIYEALQSSGQWNNLTLKQQEAIIDAKGTPQLVDALVQANQWNNLTFKQQQALVTTKGTADVMDALNKIGRWNQLSPKQQEAIVNAKGSGQLGELISKYNLWKGMPASVVKQIVAEDRASGNLKAANDAILAWQRANPGAPKNALAVDNASGPMRNAAGGVNVFANSNPGSPKNAQGYDNASGSMYGARNSVNAFAGSNPGPAKIAKANDRASAPVKTALDAVHNFMSIPNLIEKTVSVVFHKSKHAKGTNYHEGGLMEVNDQPGPVFRELVQFPGETPFIPYGRNVVFPAPRGTKVVKASETAKMFKHLPQYANGTDDAVSVLNNFKPNLQSSQVVTNNYNGGQTDNGVPKELLNRMDQLIGRFGTLLGLNAAQLSAIKAGAFNKDQLYGTMGKDQIFFDNQSL
2128856..2129698                   PHAGE_Lactob_LF1_NC_019486: hypothetical protein; HMPREF0538_22112; phage(gi418489398)     2.58e-114           LactobacillusreuteriSD2112MVGIAVNVLYIKLDDQKEVASTDITDHLTFLGLSEGPSLSNNYRDDTLEDGQVWNYSRYVQTTVTAKFLLQFIDRRDFKMAKHEIYRVLAQKGIYRLRTGVEPDIVRYCRAGSFEIKSDPEEVNYCTFEVPFENPSGMRFSKLHSDEMKDEDFLDLNMNMDENTPSYHFKGQNKFTVYNDSDITIDPVQQHHDFKITMKHNGGKFTIKNETTNTSWTYNKNVAGTDTLVLQGRKLEKNNNFDSANTDYGYITLAPGPNQFTVTGADDLDITFSFPFIYLG
2129773..2132241                   PHAGE_Lactob_LF1_NC_019486: phage-associated protein/endopeptidase; HMPREF0538_22113; phage(gi418489399)     0.0                 LactobacillusreuteriSD2112MWPTFKPSWEKNSTYQVTFSVFNYGDPLYDELDVESSFFLDGQEYIVKNCVENFDTNTKDITAWHVYNEINRIYKRSDLTLNKPTDDNQNQDVSYSVEDILKAWIDGNNLGFSYEVHGNFDKQSTSKFDSGSGKDMLSKILELWPNAIVFPNNKNIRVYSEDEFYKDNGRIIDFPHDAKSVKTTRDSQSIINEIRCVGGKHEVQHTVYTGTGGANASGPTEPVNGDWTPVIQYAASFYGIKPTDQQLNVLRAQIHLESGGREDAQQPGADPDGDGSGPALGLLQFKQRTFNYYCREPYTNVKHGFDALIAFFNIPNALGQINGVTGWSPHGAPITKDKLIITPPNPWGWPFPNVGEGHFSLGQTFGTHPQDGVGRTNGFHDGLDFGSVDHPGSEVHAVHGGKVQDIGYIAGLENYVTVVSNDYLICYQEAFSSRSNIKVSVGQDIKTGDVIGIRDTSHVHIGITKQKNLMVALRSAWSDDGTWLDPLQIIRDGIGGKDNNDAVGNDTTTESQEEYYFQPFIVKDQKSIDEWGEHPGPDLVDERFQDAEAMRKYALTTLKPDPDLNLEVTLNGNEFVPEANEIVRVIAGKKYSGSYKTVGFTLAPAKGQDNTISLNNTKTTILDYQNQRTKRLEEALDEQRQRMEGLAGSLDQQSKSLTQVVNDKKETDKSMEAVDQNIYWMQNGQHNLVTTMTGGTASSEKYNDSPVIEVEQGALRSNEFNLNGVSSISSRLIAKLNATDNSISATTYVEFLKSDGSSAGKSNIVYIVNNGAWQSAGTVNIKIPAGTTKGRLVFDVSGSGKAYVSRAQVNLGYRVTDWGSLK
2140292..2140303                   attR                                                                                 N/A                 AAAAATAAAAAG

#### region 8 ####
2132248..2132259                   attL                                                                                 N/A                 TTATTCTTGAAA
2132616..2134490                   PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; HMPREF0538_22115; phage(gi23455814)     1.93e-111           LactobacillusreuteriSD2112MSQTLTYVIGQDRRPHVDNVQDFKVNFDGSNTNWVQARQYERSMRQVFVNIKNEDGTPLDLTGCNVWFEGLLPKNSAGDFRIIDDKGYVALDPTAGRFRFDMPGHAFTVAGSYRQAFFRILKDGNSITTLEFDLDVLADKVIDGLVPRTYISPVEELINEIETKYQDSTDKLTKMTSDFVDQFTQSMNTLKALGVTVQNGLDALEAKIKQDNLFTQAEADAFKQALQEAVQKQLDEFQSQFNGPAFKEAQQASLDTNMMYGESLPAYFQNSFNHVTQGIPTGNNIVNIATIADAHWQEEGATIFSGYTAKSLEHYQWCALSTLYNHADALIALGDNINGDEPTGRLNMTLMHVRAMLQTKYVRTAMFMIRGNHDNGAGHQNTEGKSADEVLDDNAVKNGFGTKFNYYGEVRDGDSFYFYKDFPEKKVRIIGLDSNDIPLEKKDSNGHYAYDTNTAGFRSQQLNWFANKALMLPDNTWQVVVFFHIPFPNAFGQWAEDDSFKNYHHAIEILDAFKNGTTVSVNDTSNSDFSITGLQADYRSQGQGTLIAVVNGHLHKDDQDTSILNGTPIIEVTTSASFVSSVVNDSKQRNTNDEDAWDIISINTKERKIHCYRFGRGSDRDFTY
2134502..2135287                   hypothetical protein; HMPREF0538_22116                                               N/A                 LactobacillusreuteriSD2112MDETKPTIESLAQKVNYLQGRINTLWMNPNAFPVMNADPSAGNPFGWQRGFVNSHTVRAAERIPAFLNDGIDVFTLKPGFYQIRNLRAVKNVPAEAAGQGLLEVAATYPEENDQLGHLTLWDLPTHKTFHAWKSVYTNKQYVWDRIDKKQNFGGAMASSGSYYSLIRTLNTTLLYCYFDLNINVPKHGYINIDTGFPGTLRPSVPVYFAGSGEGDNVWGSVAIVLKQNGAIQIINTSDYDVSRVYGTGTYSYDEDQNTSLK
2135302..2135700                   PHAGE_Lister_A118_NC_003216: gp21; HMPREF0538_22117; phage(gi16798804)               1.16e-05            LactobacillusreuteriSD2112MLNNGNSIQASEIPDNNPPLNQPSNNKTMYYCYDKNGNYTGFIYSDSQPTDSTTKAPVKPYRDESGKSIEGITVGMANPRWNGTDWVERTVVSREQQLAQLALQQAQFQASQQKLNSQLALQLAQLTAKEAK
2135944..2136324                   PHAGE_Lactob_LfeSau_NC_029068: hypothetical protein; HMPREF0538_22118; phage(gi985757745)     3.94e-45            LactobacillusreuteriSD2112MLNNLRHNWLWLLTAVETYGLGVYFILTNSTGNFTPPPNSVLDMLDDPPFIFLLGVVGTITLVYSLWNIQHFHYKTIMTASLTFVWLLFLCGFVIHDQLRGNLLSIPSMYSFFVLFRIVLTVILKG
2136485..2136961                   PHAGE_Lactob_LfeSau_NC_029068: hypothetical protein; HMPREF0538_22119; phage(gi985757747)     1.38e-27            LactobacillusreuteriSD2112MKALNDIINWIINSGFLALLIYIAVAFGKPWVDSKIKHAKTAQEKEAWTLLQQVSMTVVNSLVGKDMTGQAKFVEAVTQVQAYLANKGLNVDMKQVQSAVQSAYELSALTPTVDPNKSNDDKQQAKKADPVLEAIKTAPNRANKLTLDKNDVTGEVKG
2136974..2137900                   PHAGE_Lactob_LfeSau_NC_029068: endolysin; HMPREF0538_22120; phage(gi985757748)       3.16e-159           LactobacillusreuteriSD2112MTMYTVDVYSGSPDSVIRDPHAQGVIVKATQGTGYVNPKCNHQWDLAGQLGKKRALYHYAGGGNPINEAQFFISNIKNYVGQGLLILDWESYQNASWGNTNWARQFVNEVHHLTGVWPLIYVQESAIWQVANCANDCGLWVAKYASMNWNSWTVPNMNVSSGAFKFITGWQYTGGDIDRSIFYLDAASWDKLANPAGATTPKIEAPKPNPTPTPVNPAPSTSNWVDALGDHWFEENGTFISNCALHLRWGATINSSVIAVVPAGTVIKYDAYSRHGGYVWLRQPREHGQYGYIACRDANTNEAFGTFK
2138047..2138205                   PHAGE_Lactob_LfeInf_NC_029058: hypothetical protein; HMPREF0538_22121; phage(gi985757321)     1.10e-17            LactobacillusreuteriSD2112MNKNLKRQFVKVPSRKINKIVNQTVDINPKSMMDELLENPKLVKTLQKLSLV
complement(2138455..2138622)       hypothetical protein; HMPREF0538_22122                                               N/A                 LactobacillusreuteriSD2112MPLLIVLIGVIILIFMIVKLKMNTFVGLVITSFVVGLLLGLPLTKIPQTIETGYT
complement(2138635..2140167)       putative gluconokinase; HMPREF0538_22123                                             N/A                 LactobacillusreuteriSD2112MNYFIGVDVGTTSTKAVLYDQNATVLDQFSQGYSLYRDASGMAEQNPTAIVEAVEKVIHDAAQKADLTNGKLLAVSFSSANQSVIMLDKNFNPLSRVITWADTRAHDVANELKNSPAGQQIYAKTGTPIHPMSPLTKIMWLNKTQADKVAQTAYFGDIKSYLFYQFFNTFKVDVSIASCTGMMNVNTCDWDDQALELANVDRSQLPEIVNGITQAIGLTAAAQAKMGIPADTPFVYGAFDGALSNLGVGAIKQNTVAITIGTSAGVRVVTDHPVIDPQQRLFCYAVDKGLWVIGGPLNNGGDVYQWAVEHLVDASAVKNENIDPYTLANRVIEGVPAGAHGLLFHPFLGGERAPLWDANARGSFFGLSHIHTRADMLRSVMEGICMNIATVFQAVRDLVGNPASVTATGGFARAEVWRQMLADVLNCPVNIPNSFESGCLGAITMAMKSLGMIENYEIIKTLVGDISSYQPNQDAVNVYQNYLPLFKQVEGLLTPAYSTIAKLQQQSTTH
2140394..2140927                   acetyltransferase, GNAT family; HMPREF0538_22124                                     N/A                 LactobacillusreuteriSD2112MKIRKATMADLDVVVDILRDGRNQLAERGVDQWQGDYPNVTHVKEDIENGYAYLVKADDGQTVGTLAIVEAPDHFYDKLNGEWLINTENYVVIHRVAIHSRHAGKGYASKLFLSLIEYLETERPEIKSIRLSTNENNMAMQRIATKSGFKKVGTLHGAFRPSELSYVYELLTKVRVA
complement(2141112..2141285)       hypothetical protein; HMPREF0538_22125                                               N/A                 LactobacillusreuteriSD2112MMNILLIILTAIFIIESIFEVRYFCQIRTIFNQSNRIEPTKRVQRIVTIETQWSWIS
complement(2141425..2141655)       hypothetical protein; HMPREF0538_22126                                               N/A                 LactobacillusreuteriSD2112MAKGSIIMEINADALKNFQDSKFNFVDADGNDVDFDNLDESVKYTLRDGETVVEDDMHAKDVVDTINNEYGKTMNV
2141852..2142127                   hypothetical protein; HMPREF0538_22127                                               N/A                 LactobacillusreuteriSD2112MSLMQNTSEINKTDKQVYLITLLRKSTNMPQYIDHMIYETAEGGQEFMARLVEAFSRAGYREKKLSDDKYNLDNGLDKITLRGSYQPIYKG
complement(2142188..2142679)       hypothetical protein; HMPREF0538_22128                                               N/A                 LactobacillusreuteriSD2112MIEAYKYYWENSFKYRATSTRADFWWPVLVNFIIFVILYFLLAIAGFASVTSIMNGYNRGVGFLIFLLFVIAVFAIAIIIPGIAICVRRVRDTGLTGWTVLVFWLLSLIFTSNDSAVMETISSVINIIFLVILCLPTGYVSKHGWWSANYGNDITVPSLRNDD
2142905..2144035                   PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0538_22129; phage(gi588498272)     5.33e-26            LactobacillusreuteriSD2112MTHLNDTMPTNFLATHRKYAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELKRGTVRQIRRQKFNGKTYDYPYHIYSYEAGQNIYLKCHQRSGRPRLYYRSKRFLQLADQLMLGEFDEHRYSPQAAIYKARDLMSDDSLIPKSVVTLYQWINDGVLRTSNLDLFEKTKRKHHQSHPQAKKCLGPNIAQRPQVADQRSEIGHWELDTIQGHKDGKDSVVLVMTDRFSRVNITRKITSKTAYAVNHFFVELRQKLGKNAYYRIFKTITSDNGSEFSELTRVHDHVFYTDPYSPWERGSNEINNRFLRKEITKGQAINDYSSAQIIATNDWMNHYPRAIFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI
2144050..2144061                   attR                                                                                 N/A                 TTATTCTTGAAA
2144121..2145287                   type III restriction enzyme, res subunit; HMPREF0538_22130                           N/A                 LactobacillusreuteriSD2112MSKKYVFKEFKINRVSERPEPLKNDEIGLKDQKRLEKGDTIYIYFGKSHSYVGQTKQFLKRYKQHYMAQSKFDLRNYKCVVMSFGQLINQLSLDDIENQLITYIAADGKHNEVLSDNSTLGNSIIPYPQQDQVKSDFITPFWHELYTHNYVHTPDIETVRQSVLFKYSPFHELSEIQAQIIQEIVNDTRNNFVINGMAGTGKTVMLTNLAAVLSKKNPNKKVAVIVKANWKKTAKRIFKTYGKSNIAVYTAVKFIQAEEDYDFVIIDESHRLRRYYSKSQNTLNTIFRLPPKVAEERGVNYDVGANELEKIVKRSKQIVLMYDPSQQIRPGDITMEQFNNITHKFKHFYLPTEYRINIPEKSGKYRRAYTGENYIKGIKNFLGPEMSI
complement(2145289..2146257)       PHAGE_Staphy_StauST398_4_NC_023499: putative transposase; HMPREF0538_22131; phage(gi588498272)     1.90e-35            LactobacillusreuteriSD2112MTYKHLTTRELTLIANFWHQGTKAYQAAKLLKRSQETIYRVYRFLDSGKTIAQYLKAYQRNKQRCGRKQAQLAKDEISYINEQVKAGWTPDTIIGRAERTISCSMRTLYRMFARGQYNFAVQQLPMKGKRHPNGYVERRGKAGHLGRSIYQRYHDFPHYQHEFGHFEADTVQGKAHRGAVMTLVERQSKVMIVLNVHRKTDEAVNYHLDKWLSKMPRHFVKSITFDNGKEFAGWREIANKHDLHTYFAEVGAPNQRGLNENNNGILRRDGLSKRLDFRNLPDELITQLMHKRNTIPRKSLHYRTPLEVFLSHVTDEQLSTFF
