gi|00000000|ref|CP002897.1|  Paracoccus denitrificans SD1, complete genome. 2985589, gc%: 65.22%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(63146..65428)           PHAGE_Ralsto_RSB2_NC_023736: putative tail tubular protein B; PDI_0065; phage(gi593779936)     8.64e-145           ParacoccusdenitrificansSD1MNFLSSVAEGLSKRPPTRHLAKLSSTRWDGAFVHTINRDVSERYTLIIRNGQARVFEAETGVERVVNAPGGWGYLTSNGGDYRAVTVADYTFILNRNTIARLSPELSPVRTNSAMVFVRGGNYSRTFKVFIDGTERAEYTTDDGSEKEDVGQTRSTHIAQQLYNDLIADTALTEYTFLLEGDIIYITRSTAEPFDIRVEDGSGGTLMVAIASQVQRFADLPSKAIEGFATEVVGDNASSFDNYHVRYTSGDVGGTGVWKEVLKGGERFTMDPATMPHVLIREADGTFTFKAAEWVPRKVGDLNKIPAPSFTDRPIKDIFFFRNRLGLIADENVIMSQAGEFFNLWRETATTTLDTDPIDLAVTNAQVSLLNHAVPFNRSLLLFSDQSQFILDGGDVLTSTSAAVNQTTSFESSPLARPVGVGNFVYFPVPRGSFSGIREFYVQDSDMAHNAIDVTAHVPRLLPRDIRHMTASTAEDILLALSDETPNTLWVYKFYSSEEGKLQSSWSRWLFSPEDTILHAGFIESSMFILLARPDGTHLVSMDVGSGAAEEGMDYQIRADMGVYTPNLVTTYDPEDGPYGSTTWTLPYNTSRPLWTIVVDGDADNPPGMVLEHDRPNPSQVTVRGDLRGFKILIGLRYEALYEFSTLHIRSQEASGGLSATSEGRLQLRYIAVDYARTGYFEVVTQARGRDPSTKVFTGRILRTHSATVGAFQLTDGRFRAPVLSRNTEARIFLRSDSFLPCSFTSAEWEGSYNTRSRRV
complement(66198..67154)           PHAGE_Mesorh_phagevB_MloP_Lo5R7ANS_NC_025431: putative major capsid protein; PDI_0066; phage(gi712913284)     2.34e-83            ParacoccusdenitrificansSD1MSNATPSRSGQVLGAGDTDALFEKVFSGEVMTIFENEVVTKSRVMSRTIDHGKSASFPVMGRASAFYHTPGNEILGGSIKHNEKIIVIDDMLISPVFIAEIDEAKNHYEVRSHYSTEVGRVLAQTWDKHVLQVGVLAARTTVSNIPGEAPAGSVITEAAAGDWDDPEAVAEAFFAAAQIFDEKNVPESERAAYLKPSTYYRLIKSPKAINRDFGGEGSYAKGKVFEIAGIEIVKTNQLPTANITAGSVAGGSGNRYVGNFTKTEGLFMHKSAVGTVQLLDLSTRMDYDPRRLGTQIVSKYAVGHGVLRPEAAIELARL
complement(67306..67476)           hypothetical protein; PDI_0067                                                       N/A                 ParacoccusdenitrificansSD1MLNLTIKGAVRHVVQFVAGAAGISALQTGEGLDLAVSAAVALVTLGSFLWDACKAA
complement(67518..68174)           PHAGE_Podovi_Lau218_NC_024329: phage capsid assembly protein; PDI_0068; phage(gi971848700)     5.10e-25            ParacoccusdenitrificansSD1MSKPAADPNRPAWLPEGFNTPEELAEAYKATQTKPAGDTQPDADAAAAKAVEQAGLDMDALSNKLIETGKLDDADYEALAKVGISKEMATSYIEGQKALGQQLVSRMHDAVGGEAQFNAIIEWAGKTLSPAEVETFNKIVDTADEGTLKLALEGLAAKYAAAGRKAPSLIQGQPSAAQADVFRSKDEVRRAMSDARYQKDAAYRADVIAKLGRSDIFR
complement(68275..68448)           hypothetical protein; PDI_0069                                                       N/A                 ParacoccusdenitrificansSD1MSAENPENNAEVGEPAPATRRKRTPKETPEVNPEAATEDNPLGTPEKFGKFTFLIRK
complement(68445..69530)           PHAGE_Pseudo_PPPL_1_NC_028661: head-tail connector protein; PDI_0070; phage(gi966198141)     4.56e-76            ParacoccusdenitrificansSD1MIELIAHEEVAYEALPENVANLLRQDGKYLAEQREAQRDWKANAQRQKPTVKLYTWLRRKGDIYEVIQWANDIPLGDTYGTYPIDLCPWLPLRWNRVDGESYGRSYVEPIWGDLLTIEALSKAITEFAAGAAKVIALVNPNGVTDESDLSDAENFEFVPGVATDVSFLKIDKYADLQVAKSLVDDLTRRIEFHFLMNTSIQRSGERVTAEEIRYMAADLEATVGAVYVLLSHEFQLPLVNITMANLTDQGRLPQLPEGLVSPTVTTGIDALSRMSDLSKLDRMVAGLRDLYGPEALAQETNVSDYISRRAAALGVDPTGLIKTPEQKQAEAEQRMQLEMMRQMGPNMVNQMGQLAQKGMEQ
69648..70313                       hypothetical protein; PDI_0071                                                       N/A                 ParacoccusdenitrificansSD1MKPNAGWGSLDEAHRRALHHCQPLLHTGANLRAFREFRQGELLYVQTEERLVGRKDGLHGLGGKGDDATGTHALKRGGQFGASGGPLRGNHGGQRQLGIVAGSGQVRLAVSFQLLVSGRRCLLHGRHFIGMFRPEEPAETPAPPNCGSMRRLLRPRRRRLAVVVSLSAPSSWRGVLVSEMGAGACASFGVSIFGRNSLVMVHPSEECCRSICRRRKSKTCC
complement(70476..70820)           PHAGE_Lister_P35_NC_009814: gp38; PDI_0072; phage(gi157325403)                       1.87e-12            ParacoccusdenitrificansSD1MPYYDHLEKGIPVLNAYDIPASDRTVSRNDNGGPTMDDLVVKPTHYVKWPIEPITFIMRNGFEFWRGNIVKYASRAGSKLYDGQDAVQSEITDLRKVIRYAEMRINQLNGEVNL
complement(70962..71120)           PHAGE_Entero_K30_NC_015719: hypothetical protein; PDI_0073; phage(gi338826833)       2.37e-07            ParacoccusdenitrificansSD1MDTAENVTITREEYETLKRETAKLAALEAGGVDNWEWYGEALADFWDDKDDG
complement(71099..71959)           PHAGE_Citrob_CR44b_NC_023576: predicted exonuclease; PDI_0074; phage(gi589286970)     1.11e-60            ParacoccusdenitrificansSD1MAKAKRTLIIDGDIWAYQGAAGAEEATNWGTDDDDGCIWRVTADETTAKQFIDNAFSELMDTLDATDMVVAISDTVNWRKTVLPTYKGNRSATRRPIILPQMREYLRTKYDAWQRPGLEGDDLLGILSGLHSRFPGEKVMVTLDKDMTTLPGLHYRPHHSILGVFEVSQEEADKFHLRQGIAGDPTDGYGGCPGWGMKSAEEFLEEPYKLVAETFTPSRGKFAGVEKTRWVKQPCDDLWACILSLYEKEGLTEGDAIVQFQVARILRTGDYDFKKKEPILWTPQRM
complement(71952..72230)           PHAGE_Synech_S_CBS4_NC_016766: Srd putative anti-sigma factor; PDI_0075; phage(gi374531802)     1.30e-19            ParacoccusdenitrificansSD1MPFNITTADISIPHECPVLGIPLIVGQPQATDNSPSLDRVMPLLGYVPGNIIVISNRANRLKNNGTVAELRMVADFYERLITTSWMKGKPDG
complement(72292..74337)           PHAGE_Klebsi_vB_KpnP_KpV289_NC_028977: T7-like phage DNA Polymerase; PDI_0076; phage(gi971762319)     2.61e-172           ParacoccusdenitrificansSD1MTRKRFVYDIETDGLLQDLTKIHSLVMWDLDAEELLSFRNDGHPDNLKRLEEGVRLLNDADLRVGHNIINFDEPALAKLFPFFAPNVPGRVLDTIILTRLIWANIKDSDLLRVKRGTLPGKLIGSHSLEAWGYRLGEWKGDYSKEFIARLLAEGWDKKDAEKEVWRLWSPEMQDYCEQDVRTNLAIYRRCQQKGFAKAAVWDEMDMAILCQKIEENGYPFDEAKAGALYASLAGQRAQIEDELRQTFGLWVEQDGAVKTPKASNAAQGYWGKVEWLFPSGEPLGPEDFTPKGQPKTNAKKSGAYRTFEGFPYTPIKIIEFSPTSRHHIANRLKALYGWKPEVFTPSGEPKLDDEVVKGLDYPTAPLLLRYFTIVKRLGQLAEGKQAWLALVRDGKIHGRYNTVGAVTRRATHSNPNIGQVPGATFVKKEVDGIKKAIPVYGEEAGWGTECRELFGVPSGWWQVGTDASGLELRCLAHFMGRWDGGAYGDALLNGDIHTMNQEAAGLPTRDMAKTFIYGFLYGAGDAKIGSIVGGDSARGKLLRETFLSQLPALGELVKAVKHKAKLHKHLSALDGGLLHVRSDHAALNTLLQSAGALICKKWGVMIERELLRRGYRHGWDGDFAFMAWVHDEYQIAARTKEIAHEIGEVSLWAIKQVEKHYSFRCPLDAEYKIGKNWAECH
complement(74610..75971)           PHAGE_Ralsto_RSB2_NC_023736: DNA primase/helicase-like protein; PDI_0077; phage(gi593779924)     2.31e-101           ParacoccusdenitrificansSD1MPWVGDKKDVTLFGSHLFGKGKRIVITEGELDAMAVAQAQGNKWPAVSLINGAKGARKDIANNLEYLANFDEVVLMFDMDEHGRAAVEEAAEVLSGRRVLVATLPLKDASECHVAGQTEAIVQAIWNAKPYAPPSVMFGEEIWQRMKSRPPVVSIPYPDWLPAFNKKVLGIRLGELDTWTSGSGMGKTTLIKQLQHHIWATTDHNQAIIHLEEPLENTAESLLGVHLKKRLTLPEVAATVDEATMRGAFEELFLSQDQHGNHRIYLHDAFGSMGSDENLMNRIRYYAHAHNCKVVWLDHLSILVSGMGEEGDERRRIDALMHNLKTLTVELGIYIGLISHLKKAGGGTSFEEGAIPSLDDLRGSGGIKQLSDSVYAMSRNQQAETEVARNTAQVHVLKSRYTGDTGPADFILFDKMTGTFLPGEDPEGNKHGFTDTTDEFAGKAPERETSQDF
75924..76388                       hypothetical protein; PDI_0078                                                       N/A                 ParacoccusdenitrificansSD1MGAKQGDILLVPHPRHPFVLVSKANLLGHHHPGPVGIAGEVTGLSPEGARHVAVSLGGLLAQLAGAERAVRPLHQIGSGLRPGRRRALGVAVGRRFVVVAGCAEAIRMAVRVSGQVVFASTLGARLPSHKLAVVVVAHCGVLGNEKAPAEVAGA
complement(76411..76593)           PHAGE_Vibrio_phi_A318_NC_025822: hypothetical protein; PDI_0079; phage(gi730966615)     4.60e-05            ParacoccusdenitrificansSD1MKELAAVLALLTSITAVLAFAYGWAWNIITLSGLDTFGGEAVVRVVGIFIPLVGAVAGYF
complement(76615..76797)           hypothetical protein; PDI_0080                                                       N/A                 ParacoccusdenitrificansSD1MLALSFYALGVVVFTALFCWQCRRFIPGTLRTERAVAFIFLWPVAVPVVLVWVILELADS
76796..77065                       hypothetical protein; PDI_0081                                                       N/A                 ParacoccusdenitrificansSD1MVSGTQMLFDQPFRTRRHVSDDAENGGYFEPSRYGGENTCDQQVGGNLGVGVLGFFQQRHDDGLADVLQAKLHIGGVSHGGQSFLWLSG
complement(77038..77295)           PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; PDI_0082; phage(gi970580066)     1.08e-10            ParacoccusdenitrificansSD1MAKTQLDHLKAHLRSGRSISALEALGLYGAFRLAARIKELRDRGWAIDTEMKEDPNGKPYASYKLSPKNDHGLPDFAQPDSHKKD
complement(77405..77557)           hypothetical protein; PDI_0083                                                       N/A                 ParacoccusdenitrificansSD1MDDYERGEWATLSRIMDHLNTFDDREIPKKALYRDLMEMRPKGDPRKQRG
complement(77557..77763)           PHAGE_Pseudo_LKA1_NC_009936: hypothetical protein; PDI_0084; phage(gi158345160)      1.86e-07            ParacoccusdenitrificansSD1MDDPEYTIEENRELPFITCRKGKFNLIVFASEVGFTAFCKATEVARRLNLTSKSDRVALFQAVCWGRL
complement(77949..78656)           PHAGE_Yersin_Yepe2_NC_011038: lysozyme; PDI_0085; phage(gi194100481)                 2.10e-39            ParacoccusdenitrificansSD1MQYVVARGDTAWAIAHRHGLTLDHLAALNPAADLSRIKVGQKLSVKGGTQPEAPSTPSASLHIGPPPATVSNVKFKARAATTGITVHCSATKPSQNWTAADIDRMHRSPATGYICIGYHFVIRRDGTVEQGRPIHVVGAHARDGGRNSTHVSVCLVGGVSEKPQAHVPGNPWNGSDAECNFTAAQFAALKELRAHINKQYGKALPVEGHRDIPGVRKACPSFQVGHWLKTGEAKL
complement(78689..78988)           PHAGE_Ralsto_RSB2_NC_023736: endonuclease-like protein; PDI_0086; phage(gi593779921)     1.09e-32            ParacoccusdenitrificansSD1MARYTPDYVLPNGIVVECKGLWDSDDRKKIALVREQFPDLDLRIVFDRSKATINKTSKTTYAMICDKLGIPYADKDVPTAWLNEPPNARSLEILKDLKK
complement(79849..80598)           PHAGE_Ralsto_RSB2_NC_023736: putative ssDNA binding protein; PDI_0087; phage(gi593779920)     3.86e-05            ParacoccusdenitrificansSD1MATDRRIVKMNTPLATFKWPKLTEPDYGTKDYPKPEGEYSVKAVFDENDPKFTAFRAKLEAYLKPVIEMGEAEFAKLKKPQRDKLGSISVNDIFTPIYDEDDEPTGQVEMKLTMKASGVVKKGPREGKKWTRKPDLFDALGRKIKGKIEVWGGTEGILAFSFTEDGYFIPATGAVGIKLQLEAAQIVTLRQGGERDAGAYGFGAQDGGFDASQYEAPKAGEGEDEGDDEFAGGEEDHLPGGDPDGSADF
complement(80624..80743)           hypothetical protein; PDI_0088                                                       N/A                 ParacoccusdenitrificansSD1MPTDLLAALAGLYEDAKCPMPVDLKMELPFRGIPVPATA
complement(80847..83168)           PHAGE_Morgan_vB_MmoP_MP2_NC_031115: hypothetical protein; PDI_0089; phage(gi100010)     1.62e-170           ParacoccusdenitrificansSD1MSKVAGAVAGLVAERESGKAGRKGGAFKLFKDYAEDYETVAYITLRHIVGSLSSDDVNFSSLSLAIGTAVAEELIYREVREADRKLYKKLMEEADERTAVHVKRKVVKKLMAHRGYDLEVPYSKAELAVTGATLIELVITATGIVEKQTIFTGKNKSRVVLAPTEETRKFIHDRSISEGLLRPLYEPMIAPPGEWTTPFDGGYYSQNVRPIRLVKTRAKGYLQSLSSMEMEEVYQAINNAQNTAWTVNPFILTMLEMAWEKDFSFGGIPSREHIPAPPKPHDIETNEEARKEWRRAAHNVFLENREMDGKRIAFLSALNTATRYSLFPAIYMPYQMDFRGRIYAVPQLNPQGPDYMKALLMFAEGKPLDEESAPFLAIHLANCGAFSKIDKAPLEDRVAWVYDNEEAILACADNPIDNRWWTEADSPYCFLAAAKEWAGWVREGEGFISHIPVALDGSCSGIQHFSMALADEVGGAAVNLVPSDKPADIYTLVLNRVTEQARLDSLTFGTEEGELARTWLRSGLMDRSLCKRPTMTYGYGSSQFGFRDQIETDTLRPTLKAHKKGEAPWFFEDNGFKASLYMARLVQQAVEGTVVKAAEAMAWLKAVAKVVTSEGLPVRWTTPDGFPVVQHYRELRSQKVDTVIFGSRVRLNVNQESPQVSKRQQASGLSPNFVHSLDATHLRIVVNRAAAEDIKSFALVHDSFGTHAADTGRFFAILREAMVDMYSRTDVIGDFAAEIASQLSEENRENLPEAPAKGTLNIAAVVDCDFAFA

#### region 2 ####
complement(440745..440984)         PHAGE_Synech_S_CAM4_NC_031900: DNA helicase; PDI_0460; phage(gi100021)               7.63e-08            ParacoccusdenitrificansSD1MKARVTIMLKDGVLDPQGEAIRHALGGLGFAGVSGVRQGKVIELDLAAADAEAARAEVARMCEGLLANTVIEKYAVEIV
complement(440996..441760)         PHAGE_Synech_ACG_2014b_NC_027130: phosphoribosylaminoimidazole-succinocarboxamide synthase; PDI_0461; phage(gi827048086)     3.72e-54            ParacoccusdenitrificansSD1MAPRRKKIYEGKAKILYEGTEPGTLIQYFKDDATAFNAQKKATIEGKGVLNNRLSEFFMTGLTNIGVPNHFIRRINMREQLVRQVEIIPLEVIVRNFAAGSIAKRLGMEEGTPLPRPIVEYSFKNDELGDPFVSEEYIIAFGWASQQDLDDIVSLALRVNDFLSGVFFGVGIKLIDFKIEVGRIWDGDFMRLVVADEISPDSCRLWDVKTGQKLDKDVFRRDLGSLTDAYTEVARRLGLMPANTTSLTKPTLIN
441906..442220                     hypothetical protein; PDI_0462                                                       N/A                 ParacoccusdenitrificansSD1MTTFDDRERAQEAKFAHDAELNFKAEARRNRLLGEWAAGLLGKSGDDARAYALTVVSSDFDEPGDEDVFRKLVADLTGKADEAAIRAKMIELRATARDQIVSEM
complement(442360..443367)         PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; PDI_0463; phage(gi100037)       2.40e-22            ParacoccusdenitrificansSD1MTKRELPKYVYRKKGGRIYFIRRGFKTVRIVSEPGTPEFWAEYAAILRGRAPVPAGRTLKALAISYQLSDRFTALAPRSRQDYLRVLDYVKEKLGPLPADRMKRKDVIRAQQVNKEAVRFANYIVQALRVMFEHAIDQGWRDDNPTKGVRLLKSGRAPRLPWPEDMIAAFRQAAPIGTRARLIFELLLGTGQRIGDVLKMCWDDLAEGGVHVRQGKTGAPLWISLTSGLREALGATPKVGLTICAQANGRPTSYHGAHALIMAVRKEIGAEKFDIHALRHTAAHELAAAECSDEVIQAITGHSSVAMVRHYTGSSRQKARAKEAQSRREQNRCET
complement(443364..443525)         hypothetical protein; PDI_0464                                                       N/A                 ParacoccusdenitrificansSD1MKFSQANVEKVIRTVKEAGLPITDIKVGPQGEIDVRCGPHEPADEFDATDMRR
complement(443690..443914)         hypothetical protein; PDI_0465                                                       N/A                 ParacoccusdenitrificansSD1MSIHRGMQDARCDQARSEADISAEEILRRIYALPVAWQLRTVEFLRTHANPELRACAKPLEDALILRRLMGGAP
complement(443911..444249)         PHAGE_Sulfit_NYA_2014a_NC_027299: hypothetical protein; PDI_0466; phage(gi848469716)     1.74e-08            ParacoccusdenitrificansSD1MDIARNQIEAVLQREVSRLVLRAQEDASREAERRRENAEQVLAARGARALDQRSAGPQPIYVRPVKAQEIFGVHRATLYRWADAGHINIHKRGAATFVRVDEVRAFIEGNQS
complement(444318..444668)         hypothetical protein; PDI_0467                                                       N/A                 ParacoccusdenitrificansSD1MNRRDLIALPAVAALAPAPTLGADAPAVSLLALWQQAKALNDRLEATERAEDPTAWDAGMTRLIQLQDRIAAAPACSPEAWAIKILSADDGGAIENASDLGRALVDQARALIGGAQ
444820..444831                     attL                                                                                 N/A                 GACCGGGCCGGC
complement(444959..445096)         PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; PDI_0468; phage(gi100009)         7.42e-07            ParacoccusdenitrificansSD1MLRLPDGWRDQLKKEAQKNGRSMNAEIVQRLRPTLEAADARRPQS
445562..445777                     hypothetical protein; PDI_0469                                                       N/A                 ParacoccusdenitrificansSD1MKAPLPIEHTIAEWLAQIEHSETDDQMQERLAELNDFLAAGPDPSQFEAVIDPDGTSPRLSGKAVVLRLKP
445838..446110                     PHAGE_Burkho_phiE202_NC_009234: gp6, pANL56; PDI_0470; phage(gi134288760)            7.98e-29            ParacoccusdenitrificansSD1MKCTSDPAKRAKTLAERGIDLEADGAEVLAGATLTFEDDRFDYGETRLISIGFLRSRMVVMIWTPRGETAHVISMRKANDREQKAYAPRF
446094..446315                     PHAGE_Burkho_phiE202_NC_009234: gp7, pANL12; PDI_0471; phage(gi134288781)            6.38e-08            ParacoccusdenitrificansSD1MPPDFDDDAPDLATPYWEKRAAKATVQRGRPKLESPKVSTTIRLSPEVIAYFKAGGPGWQSRIDEALRKLAGV
complement(446838..447365)         PHAGE_Entero_Arya_NC_031048: hypothetical protein; PDI_0472; phage(gi100009)         1.88e-46            ParacoccusdenitrificansSD1MAMDELKSTQSEIGKATSRALRRTATSLRVMASKSMNSELKVHKAMDLRRRLETMKLRTRGLDGSQVIGMWFGLNDMPVSKLKGKVKRTPGGASFRGTEFPGAFVAKVGKKARPSIYKRSGRGRFPLIEQTMPIKDIADPIIEDEVFPEATRIFLKNLMHELKYRARLRAEGIGG
447576..447651                     tRNA                                                                                 N/A                 TGCTGTGGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGTCGAGAGTTCAATCCTCTCTCACAGCACCA
447743..449428                     PROPHAGE_Xantho_33913: phage-related integrase; PDI_0473; phage(gi21231066)          6.56e-08            ParacoccusdenitrificansSD1MAGQVKNLKIKGGRFYARVSVPAHLRPILGKSELVTPLGGERRAAMKALPTAVATLQRQIAAAEAKAAGDRLDDLRTPVTTADYGSAVWKRYQAMLAEDEAKRDRLPSVDAIKAEQDKLMQRAQAGQIALADPLAVLDASLDLLVMKDAQAFDQSARQAKLDALRADLTENRTHLVGHEIDDYLDRHSLTAPEGSAERATLAKRIMRAEIEALQRTLERDRGDYGGKPVDPVVTPPAAALEALEPVPIKKLFKDYIASRQALGKHKDGAKAWETAILHLIKFLGHSDARRITKRNLLDWRDKLIAEKKSTKTIADKYLASVRAMLRWAHENDRLPTNEAEAVKQEVAKKRRTREAGYTDAEAIAVLKASTSYQPKQADNPAHRESAHITAAKRWVPILCAFTGARVAEMTQLRKEDVRKEGDRWIIRITPEAGSVKTGVYRDVPLHRQVIALGFMDFVEAAQPGPLFHAGKSSARYLASARATAGRVSQWLQELHLVPAGVQPSHAWRHRFKTQARDLGADSRVVDGIQGHASRTAADDYGDVSLIAKARVIDALPDYNLK
449498..450727                     PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; PDI_0474; phage(gi46402090)     4.22e-49            ParacoccusdenitrificansSD1MPSITKRLARLFGQGVTEQKAFTLTSPEAFGLFGGLPVRSGVTVTSETALRVPAVAAAVGLISEACGNLPFKLHDRDTRKAQKDHAAYELIHGEANPWTSAEELREHLTRDALLCGHGFAQVVRNGIGQPLELHRIEPGAVSIETDDYGEPSYRIRLKGGGDTVLPYTEVLHISTLDGVSPITHAKEAIGLALAAEQHLANWYSRSGRPSGYLATTEKLSGNNATAELENMIKRWNEVNTGENAGRTAILDRGFQYYPLATSNTDAEFYTNRIEQIREIARAFRIPPSMIFEHERATWSNVEQMAQQFLTMTLRPWLKRWQAAYARVLLSPDDRRALYIEAETKDLMTVDFAAQATAYSQYVAMRAMTPNEVRAGLNLPPMEGGDELANPFTTSGGTTTPAPQEENSNA
450724..451044                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; PDI_0475; phage(gi100014)       3.18e-05            ParacoccusdenitrificansSD1MITATAFFGDKERPFTLSDDMVAELEAKTQTGIGVLYQRLLGQAFKLADLSEVIRLGLIGGGTSPEEADRLVGTYARNRPVAEVLPLATAILAARWLGADEVQADG
451037..452590                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; PDI_0476; phage(gi100006)       1.07e-39            ParacoccusdenitrificansSD1MADLETLDRIETKAQLTVSEAGEISGIAWPFSGPDSVGDMIEPGAFIVPASLPICLEHDKSKAIGVWDTITETARGLEVKGRLFLEGITGAKSAHRYLKAGAIKGLSISFSNAMYRPLANGGRHFVEVPLNEISICKDPKHPEARISAVKSQSTNTEFNVENEEQAQEVKAQTPANDAAQIDTKALNAVLSRLDKLEAKANRPGAPAIAAGKADTEKKAFVDFIRTGDASELKALAVGAPSTGGILAPDSTSTTILEKVVEMSPIRQLATVIQMSGPSLKVPRLVDSVEPQIVAETGTKPDDEPSFEEITLEPFLAGVSVPMTLSLLEDSHVNLDAFVTGHIAKRFALKESQWFVNGDGTTAPEGVMSASAGIEELDGSASMVQANDLIDMFYELPQEHSSNGAWLMNPRTVAAVRKLANTAGDYLWQNGIAAGQPATLLGRPVYLSRGMPEVAPDSTPVLFGDFAFGYTIADRVGLELIRDGITGAKTDIFRITARRRVGARVTMPSAFIKLRTAA
452722..453204                     hypothetical protein; PDI_0477                                                       N/A                 ParacoccusdenitrificansSD1MRQTYTGIRAVLLATATDRAAAGFLLTAAAQEPLAPFLDHAQAACLELLANLLPEPEEAPATSTTAKPITLREYLTELFKFGTTILEWSPSEVWQASPAEIEAILCARLERLEAMETASNTDRQPKHQMSQDQRQANIEAGLDPDFDRHGLRALKARHGA
453236..453541                     PHAGE_Pseudo_PAJU2_NC_011373: putative endonuclease; PDI_0478; phage(gi209552497)     9.11e-22            ParacoccusdenitrificansSD1MPHGVLCACQQARQLERKRRYDRTRPNSRQRGYTREWEKARAEFLRLHPCCAMCGADATLVDHIKPHRGDKALFWNWNNWQALCTGCHSSVKQRQERQADV
454208..454525                     PHAGE_Entero_mEp235_NC_019708: head-tail connector II; PDI_0479; phage(gi428781817)     8.69e-05            ParacoccusdenitrificansSD1MPLPSALVRAHLNFLPDETADDAILTHYGNVAEAWVASYTGLPFDADNPLMLQAALMLVAHQYEAREAVTFASAYQLPFGVTDLLSGIKRQVVGYVPEVEASTDG
454518..454973                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; PDI_0480; phage(gi100010)       3.09e-06            ParacoccusdenitrificansSD1MAKLVTGSEELARKLAAIKDHVAAELRAELVKAGHVVADDARALAETSRRTGDLIESITVTGPGETTPPHSTDGGQRTAGPFEVLVTAGDTDARHAHLVEGGTKPRMHKDGTTTGTMPAAPFFNPAWRLNRRRLEQRINRAMRKAFREASQ
454970..455389                     hypothetical protein; PDI_0481                                                       N/A                 ParacoccusdenitrificansSD1MTPDMELQRAVKLALVATPAIAEHITPERIRAGIARPDETPVIIMAPAQVDILGRASGGQVVAEVSMKLHVWTDAGQSDIAHQITSAAMLALMDAPRAEGFGFDAWERPVMAWVPDPDPAYSFAHAVIGLRATLRWRAG
455374..455703                     PHAGE_Pseudo_Pq0_NC_029100: hypothetical protein; PDI_0482; phage(gi985760533)       6.95e-07            ParacoccusdenitrificansSD1MEGRLMRAGKLQHRIQIERAHVLVDDYGIGRESWLPILTTRAELKEATTSEFLTGPGEVDNRKALFLIRYPLVQITTADRLVMDGKAYNIVELAEIGRRKGLEIRVIAA
455700..456095                     PHAGE_Gordon_Nymphadora_NC_031061: protector from prophage-induced early lysis; PDI_0483; phage(gi100001)     3.22e-06            ParacoccusdenitrificansSD1MSKHLRGVKPALGRDAEALTKAPPAPAYLSAHAKAEWRRVLPLLVARGVITKADLAGVESYCVAAGAARQIGEAMALAGGLPDLRLGGLQIRYMQTARQLAAEYGLTPTSRARMGAGGDADDDTGPNPLAI
456095..457726                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; PDI_0484; phage(gi100002)       1.39e-44            ParacoccusdenitrificansSD1MARKSSFPEWVYDNSPIPDPTGQGQRAVDFLKSLRHIKSTAPGRAFTLYPWQERIIRAIYGPRDADGDRIVTRVFFYIPRGNRKTTLSAALALLHLIGPEKVPGGEIVFAAGDKRQASIAFKEAREMVSLDRRLVRATKVINQRNAAREIESLIRGYESKLEVVSSDGSRQNGTTPSFVLADEIHAWQEAAGAEMWEVLESGISKGRNGLMVTATTAGRGATGFAADQYAYARAVATGEISDPSLLPIMFEMQEGDDWTDEKVWHRCNPGLADGFQDLKDLRNKARRAQNLPAAGYAFQQYHLNKWQGNSRDPLFDLAVYDKRKLDDDEADLEQLPAYIGVDLSQTGDLSSVSIAFRHDDGQITLRNRCFVPAADLKAKGEKDRAPYQEWADAGLIDVCPAGIIDEKQVEDHIRELCATYDVQEIAVDPHLANKLMQNLADDGLPVFQHPQSVMQMSRAIGELVKAVNGDLIRHDGDPVMRSHFDNVAVSTNPQSGLVRMHKQRSNGRIDAAVASAMAVSRARIAQEQGGLYSRDDILGLLVA
457810..459801                     PHAGE_Salini_M8CR30_2_NC_042350: hypothetical protein; PDI_0485; phage(gi100019)     6.45e-07            ParacoccusdenitrificansSD1MERAIAQQQQSAKRMEQIARQNANKIASEYEGIGGRIGKAFNGIPASLKGIGGAFLGGVAGGIALGGLDQIATSVSRITKETANLKNEASRAGVSTTVFQEWKFLADQNRISVDALTDGFKEMHLRAGEFFLDGTGAGAEAFKKLGYSAEELKAKLKDPSALMTEILGKLKNFDQAGRSFLLEEIFGGAGGEQLGILIGQGEKALNETIQRAHDVGAVLDSEMIDKTAEIDRRFGELAARVESFGKRAVIAIADAAVELTDFRDKLDGIFDNEAEGRAILGNELYNELAKNRDAVDAQADSLRQLDGAYQRLAEEAATAGNAMRGAIGQLDSWGYDAAADQLRNASAEMMELARQFREGEITGEDFAAKLAEIQKEADAAFASLSDVDRARFSNVTSQLGRLGGVIASVTAQASALVGELAKAAQIDPGTKRLEAMRQQHAAQQASMDSLTAMREANERFNASEAARNALTSEGVKLEREKEAVRKRAAEAGATLTDAQIAEAAQAVLDADGQPVRSSARNCAMVPGKGRPSSSMTTSQSGSSACTRCRIPCAKPPAPPRFSRLRSASSRGSSIMSRYSRVPSPEALSNTTTWSISSASSRPTVTRSLSSRLWVTTRAAMRGRAGAGQGKGSDCCGSWLERMSVLCSGMRRPRPRPDGSAPPD
459953..461098                     PHAGE_Caulob_CcrColossus_NC_019406: DUF475 protein; PDI_0486; phage(gi414088276)     4.53e-83            ParacoccusdenitrificansSD1MMSASILGQPPGTIIHMTQGNSPLSGGGLGDGARRSTLHYFTWAFIVTVLGLALGGLLGWQTTGTLGGTLSVFFICAVLAVLEISLSFDNAIVNANKLKDMTPKWQRRFLTWGIIIAVFGMRIVFPLLIVVIAANIGPWQAMVLAATQPDEYSRIMHEAHLPIAAFGGTFLMMVGLSFFFDHEKDVHWVKWLEDRMQRYATIRGIEVAVVLVTVLIFSRFLEGAESQVFFSSAIWGLLTFLLVEVLGGLLDSSQQTLQAGAKGGIGAFLYLEVLDASFSFDGVIGAFALTHNLFVIAIGLGIGAMYVRSMTIMLVERGTLAEYRFLEHGAFYAIIALSVIMFVQPLMHIPEVITGLGGATLIGISFWSSIRWNRKNHAVEA
466541..466552                     attR                                                                                 N/A                 GACCGGGCCGGC

#### region 3 ####
856639..856650                     attL                                                                                 N/A                 GCCGGCGGTGGC
860695..860994                     PHAGE_Entero_AUEF3_NC_042134: endonuclease II; PDI_0912; phage(gi100065)             4.96e-06            ParacoccusdenitrificansSD1MDRQITIQRYTSWIDDYGTPILTWTDRATVWASLIQRSTNEYIRGYGAADEAVLIFRIRWLDDVRNADRVLFEGKPLNIKEIATIDRRQGLELRCVLIE
complement(861115..861249)         hypothetical protein; PDI_0913                                                       N/A                 ParacoccusdenitrificansSD1MHYYLIQKHGWVPSVVRSLSTEDLVFLLAEEMSGWTLPEDAKDV
862305..862859                     hypothetical protein; PDI_0914                                                       N/A                 ParacoccusdenitrificansSD1MELLNREFTAQSASLATGCDARKISDWSTRGLIVGMEGGGIQGRSRKFSWFNVVEIAIALELMEIGMSSVQDAFTAARRFAHIGEARAGWVGEDNSHDPTPRLPGLPHHHKLGLTFLFAWAGGSKVVLTDYHGEVKLGELTPDYHRARGFIVVNVSQLFKGICHRLALDYREVLDEAYPKEAAA
862916..863068                     hypothetical protein; PDI_0915                                                       N/A                 ParacoccusdenitrificansSD1MKVAEFRSLVEAGHLPRGREIAPGVLRWVTDDLRRIASGDASDGMGDVQW
863062..864060                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; PDI_0916; phage(gi100037)       7.08e-18            ParacoccusdenitrificansSD1MVAKKYLWRHPAGRIYVRLKGKLHRITAAEGTADFDRQYWEILTGKRMQAKTSWAALMDDYRKSDRWTGLKPRTRQDYDKVMDYLREKIGTRDVKALTRADVIGAQKANAHRTRFANYIPQMLVVLCEHAIDLGWIQNNPAKGVRALKTPVERQREHLPWPDWAVEKFRTEASELCRLIFEIGVGSVQRPGDWVGFRWGDYDGDSLTLRQNKTDKPLVLPCTDQLKAALDHAKAALGVVPIAARPILIKRDGNPISYRYMADLMLKERKRLGLEAYDLHALRYRGVKELAWAGCDDDEIAAYSGHATKEMIAKYAGEARQEMRARQAREKRQ
864188..864529                     PHAGE_Caulob_rogue_NC_019408: putative Ser/Thr protein phosphatase; PDI_0917; phage(gi414089128)     1.49e-13            ParacoccusdenitrificansSD1MPEPHLRWLDALPLWHLIPRALFVHAGIRPGVDLARQTEHDLVWIRKGFLDDATDHGVLIVHGHTPVERVTHFGNRLAIDTGAAYGGPLSVVVFDETGLHLLAEEGRVPVPRA
864677..865279                     Sodium-dependent phosphate transporter protein; PDI_0918                             N/A                 ParacoccusdenitrificansSD1MQSLSVILQLAGAVALLLFGLGLIRDGMVRAFGMKLKMVLGRGTETGARAFLSGLVATLGLQSSTATALMTASFVDRGMIRPKMAQIVLLGANLGTALTAWIVASGLEALVPALLLVGYVLRRRHQRACPLPPPPSRAMRPATLPAPHASCPRPRQRVRDARTASPPRHAVLPQGFFRPARPHCPASPLRISSSAPCRSP
865478..865894                     PHAGE_Brucel_BiPBO1_NC_031264: exonuclease A; PDI_0919; phage(gi100018)              1.86e-13            ParacoccusdenitrificansSD1MGDLITISPISSSYQVSAEQVTFEVAATPEMLALALAAKDRVRDRAVTIYLQLFDLTNGEAPIGSPMALYSGLMMRMPWSASGPDQRTIRVESEGLFFRRNAAPRGRWTDADQKARHPGDKGFERLPLYVSYETRWRG
865926..866291                     PHAGE_Roseob_SIO1_NC_002519: gp26.2; PDI_0920; phage(gi9964635)                      1.08e-07            ParacoccusdenitrificansSD1MRVVDMIEDLRAAVDGMMPVSRPWTASVVAGLIQNPDGVVLVGEGGFLAGCLQATVINPAKVALELGWFARDRSGMRLLRAFEVWAAESGAAMIKMSTGAVGPDLARIGYTMTEKTWVKRL
866536..868311                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; PDI_0921; phage(gi100029)       5.24e-51            ParacoccusdenitrificansSD1MFFEADDGQLLQIVVCAHGQVDGLIGFWWDGELVETDPDGRVERYKYNYFRDGSGIGGDYSEVLDRFPTLWTADHRLQGQTTFCTKFGDPSDEDFAKVFPKGAYTVVQAEIRGSRVRNLAGDLVYSENAGLCIRDLLTHPDGWNIPLARLDTASWQAFSDLCDEAVPLAAGGTEPRYRLCGFYSLDDALKDVAARMLATCDGQVYETAEGKIGILGGQWSEPDVTITADDIYSVEMQDGYDPFADYNVLKGSFISPSHGYQPTEVAETRDEGALATQEERVEQYDNDMVPASGQLQRLMKIKLAKDRRALEGAIRTNLVGMKARFPKGDGIHTIRIVAEEFGLNGVFEVTSHSFDIPNAVCDIGIASIENCYPWDAASEEKPLPPGLNDLIVPEHGLPPLVPVLTQEIVVVSGDVHGVKVVVTVTEPDRGDLELRAQIAPGTHAAEDAAAWVDMVAANYRAESGVLDDGEAYTVRVRWRGRGEWELAGVVTTIANPSAPEAPTDFGATSAINSIYIDWVNAPADFWRTQIRRGTSIDFEESNVIATVAGSAGQPSSYTDTPPGGVTYRYWAVTLNASGVPSSPAGPATVSA
880587..880598                     attR                                                                                 N/A                 GCCGGCGGTGGC
