gi|433300835|ref|CP003079.1|  Mycobacterium smegmatis JS623 plasmid pMYCSM01, complete sequence. 394147, gc%: 64.92%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(138892..139254)         PHAGE_Mycoba_Adephagia_NC_051610: DNA adenine methyltransferase; Mycsm_06615; phage(gi100041)     8.49e-05            MycobacteriumsmegmatisJS623MKRLALGLTAATTTAAAILGIATYPPAARADAVAYLVNVTVRPGYNFANAEQALTYGRGVCDKIAAGRGYGQIIADVKADFATSDEYQASYLIAQSANELCPAQIWQLRNSAANYRPAAG
complement(139251..139979)         hypothetical protein; Mycsm_06616                                                    N/A                 MycobacteriumsmegmatisJS623MSDEQLSVDEPVNTAEQASPRASRSRSRRITLRRRRHADAVAHQDTAADVVEPPVPKSNCETDEGEQRGSASDGTEENRSRRGGFTRVICFGVLPVVALLSTLGVAYLKYQEATNTAAERASIESVQVAKDSAIAMLSYTPDTVEAKLTAARDRLTGNFRDSYTSLTHDVVIPGAKEQKISATATVPAAATVSASANHAVALIFVNQAIVIDNSAPSETSSVVQVALDKVDNRWLISGFDPK
complement(139976..140623)         hypothetical protein; Mycsm_06617                                                    N/A                 MycobacteriumsmegmatisJS623MTIETDRDITTADADSIADPEPIETVGNADELGEEEHHADPPEVGGRKRRRLRLPKSPLRQALIVVVLIIVVLIGVAGWLGWHVYQSNRLSQDHAALLQVGRQGALSLTTIDWQHADADVQRILDCATGTFYDDFSKRSKPFIDVVKQAQSTSVGTITAAGLESATANDAQVLVAVSVKLSNRAGPEQNPRAWRMRISVQKVGEDVKVSNVEFVP
complement(140627..142075)         virulence factor Mce family protein; Mycsm_06618                                     N/A                 MycobacteriumsmegmatisJS623MHLSKRIQVQLAVFAVLTLVAGGIMSFAILGLPNLLFGVGHYQVTMDLPQAGGLYQNANVTYRGTEVGQVKALELTPGGVRATLSLDSDVAIPADLDAQVHSQTAAGEQFVALVPRSGGGALLKNGDAIPRDRTSVPPDINSLLTATNRGLQAIPHDNLKTAIDEAYTAVGGLGPELSRLVKGTTTLTQDARTNLDALTTVIDQSKPILDTQTDTSDAIQAWAANLAQITGELKSQDDSLNGILATAPGAADEARQLLDRVRPTVPILAANLVSVGQVAVTYQPNLEQLLVLLPPFVAHVQGAELANRDTKQAYKGAYLSFNLNLNLPPPCTTGFLPANQVRPPSEVDYPERPAGDLYCRVPQDSMLNVRGVRNTPCETRPGKRAATVKMCESDENYVPLNDGFNWKGDPNATLSGQPVPQLPPGSPAPAAPPPPPLAVANYDPATGTYIGPDGRQYTQANLAAERPEQQTWQDMLLPPKGN
complement(142077..143213)         virulence factor Mce family protein; Mycsm_06619                                     N/A                 MycobacteriumsmegmatisJS623MNTTRRWAAAVIVLVVATVGLSGCGWRGLNSLPLPGTQGRGPGSFSIQAQMPDVNNIQPNSRVRVGDVTVGTVTKIERQGWHALVTMRLNGDVDLPANSTARIGQTSILGSLHTELVPPADAPPAGKLHEGSLIPLSSEGTYPSTEQTLAAASMLLNGGGLGQVQDITKALTTAFGGREDDLRSLLVQLDTFIGRVNTQTDDIIAATDSINRLAGKFAAQKPVIDKAFDTIPDALAVLNGERDNLIEAVDQLGKFSALAADSVNQTKQPLVQELKNLGPVLESLANAGKSLTRSLGLFSTYPFPKDTLTKWFRGDYANITLVVDLTLSRLDSSFFTGTRFEGDLTELEMQWGRTIGVLPSPYTAGNPLLAPYRHDQGP
complement(143210..144550)         virulence factor Mce family protein; Mycsm_06620                                     N/A                 MycobacteriumsmegmatisJS623MTRSRLLRLALAAVLVAVIACATAVGISLTRKASRIHAVAYFDNSNGVFVGDDVRIRGVDVGKIDAIEPEPTRAKITFWVDDKYPVPADAKAVILSPTLVTSRALQLTPPYQGGPTLPDNAVIPQNRTAVPVEWDDFRGQLEKLAATLQPTQPGGVSTLGELVNTAADNLRGQGPSIRDAIARLSQAISALGDHSGDTFTSVKNLATLVSALQDSTDLIRQLNQNLASVTGLLANDPGEVADAVKNLNDVVGEVRDFVAENRETLGTTSDKLTSVSQTLTESLDDIQQVLHTAPTTAANVVNIYQPAQGTLSGAAAINNFSDPITFLCGAVQAASRLGAEQSAKLCVQYLAPIVKNRQYNFLPIGLNPFVGPMARPNEVTYSEDWMRPDYIPPQPNPPAAAPPPAGPPLPAEAPLPADTAPVATQAQQTDPAAGLPGIMVPHGGGS
complement(144547..145908)         virulence factor Mce family protein; Mycsm_06621                                     N/A                 MycobacteriumsmegmatisJS623MRPFRERNPIVIGVVAVVAIGAITLGTLNFNRLPFINTGDTYSAYFEEAGGLTTGAPVQVSGFDAGQVKGITLEPQGVLVTFTVADDIRLGERTEAAIKTIALLGNKVLSINPRGEGHLSGPIPLQRTVSPYQLPDAVGDLSATISGLNTNQLSDSLKTLSQTLQDTPPQLKLAVEGVSRFSETLNERDTELRNLLANASKATTVLAERSDRIVQLIHDSNALLAALRNQSAALDQISGNISSLAQQIRGFIGENRATLKPALDKLNGVLATIDNRKAEVQKSIKGLSSYVMSFGEAVSSGPFFKAYVANLLPGQFVQPFIDAAFSDLGLDPHVLLPSQRTDPQIGQPGTPALPVPYPRTGQGGEPNLTLPDAITGKPGDQGCGPPGLPLPGPTGCYPYREPLPAPPPGGPPPGPPALPPGQDHLQQPAPTPVYVPAPGEPAPTPAPAAEGDR
complement(145905..146933)         virulence factor Mce family protein; Mycsm_06622                                     N/A                 MycobacteriumsmegmatisJS623MPGNLFSTIWRLSAFVVVCLLGAAALVIVFGQLRFEQAQVYNAIFTNVSGLKSGNFVRIAGVEVGKVQSIKIRDDATAMVSFTADDSVVMTEGTRAVIRYDDLIGGRYMALEEGAGGIKKLPVGATIPVDRTAPALDLEALIGGFRPLFRALDPDQVNALSGQLIAAFQGQGATIGSILTQTAALTNTLADRDALIGQVVVNLNTVLGSLGDHSDKLGTAVDSLSELVHGLEGRKHDISTAVAYANEAAGSVADLLSQARPALQKTVTETDRTAGNVLADHDYFDNLLKTLPDAYRVLGRQALGGDFFSFYLCDLVLKVNGKGGQPVFIKMAGQDTGRCTPQ

#### region 2 ####
297648..299165                     PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; Mycsm_06780; phage(gi589892216)     9.85e-85            MycobacteriumsmegmatisJS623MALNLTSRLQVTAHYFWNRRNAAALSHHGVRLDYDPEQRRIAALILGFVLTLVAIALAALMAYIKPAGQVGTSAVLADRDTGAIYVLVDGRLHPALNLTSARLISGQNANPTFVKAAELDKYPKAPWVGIVGAPTQMPIRTALQSQWAVCDTTPSATATASAGRAPVVTAIAGPLTLGTRSAPLQMPNAILARNNDKTFVVWDGHRSDIDLSNKSVALALGVDSAAPQPVTMSNALYDAIPATDPLVVPAIADAGAPSPYNLGPGAVVGSVLSVRDVAQGGGESLYVLLANGVQRISPFVASLLRAANSFGDVAPVAVSPDRLAPVPVVDTLPVSYYPATRLHLVDTSVAVTTCMAWSKGSTDKAAVVAVLSGQGLPIPAESDNRLIHLVKDGRNDPDSDEADQVYIAPGSTNLVMTTNADPSSVSRDSLWWISDEGVRYGIALEDATLRPLGIATASARQAPWAMIRTFAPGAALSKADALTQHDSLTPVGGAEALPTKTQAPQ
299233..300597                     PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; Mycsm_06781; phage(gi589892225)     1.40e-36            MycobacteriumsmegmatisJS623MSNPQRDDSDEYATGPTAQPGGAESVERPAPAQSPEAPRHLAGAPDPGVTRPVPPAPWPDAPAPFRPDPAAPPPSTGARHLEQPARHAPEGLSETTSLINRDELLAGPRAPQGPAPRGPAGDWGSAPPGWGPTPGAAGSFNFVDDIRSSELVPTRKIPPQRGWRKALYAATFHLINPGQSPDERYQAELEAKVRSLLRGRYKIGVLGKGGVGKTTISACVGSLLAQMRPDDRVVAIDADTAFGKLASRIDPKTSGSYWELAGDRNLHTFADVRSRVGSNASGLFVLAGEMSTARRRVLDPVVYAAAVAQLDRHFTVSIVDCGSTMDAPVTRAAVADLDALIVVSSCWYDGASAAGQTLEWLANNGYTGLLHRTVVVVNNSDNQASKRDVKLLIERFGSRGQKVIEMPYDRHLRPAGVIDIDNELSKHTRRRVLEIAAALAEHFTATTERPRERR
300594..302105                     PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; Mycsm_06782; phage(gi589892226)     9.93e-10            MycobacteriumsmegmatisJS623MTATADRGVAGRDVRADTGVPASSRVSLLVGESHQIDLLLPAAVPLAKLADPTRDAINRQLRAIGAEELPRGNFVFARAAGMTMLAGNLSLSAQGVSDAELLAFVPAASAQRYEPNIENVSAAIARWARSHFPAVSAGDAAAVAVALTTVALMVSGALVWRQRWATAGGWLTPVIFGAAGLVLIAVTVVTVRMSAPLPARTAACWSAVAALVAAGACAPPGPHPGAPHAFLAAGVALVATALVARFTSRYWVAAAAVITVSVSVLAASAARMFFTVPGQRIATVMLIAVLTVSLAAPAIGRQLAKVPRQSFDSITGKDMYTRAPGEPEDTITPVADAPHDITLRGEELAEVARRSNRVLTGLLLGNALVQVVSSWCAIHPGVGAQWPFVVVVATVAVILVLRARAFRDRRHAITVVTGGAVSLFAIPVHYGIAADAASVTGLWAGAVVLGIAVCALLGGTVIPNRNFSEPVRELVEYVEYVATTAVIVFAAWAIDLLHFVRYH
302105..303739                     PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; Mycsm_06783; phage(gi589892227)     2.02e-52            MycobacteriumsmegmatisJS623MRMRSAAAGFGAAVLLGANVAAPPAALAIGPPVIDPGALPPPETPGPVEEMRQTEACINPVVIADPDVTQPAPGNVMLSVPQAWQFSTGAGVTVAVIDTGVTPNPRFPALFAGGDYVQGLAGGGLTDCENHGTAVASIIGAAPSNPADRPPTKPLGAPPVGPPPAVPANPAPTSAPPPPPPPQTITVIAPPPPPPPPPPPEGDAPADGAADPAAAAPLVPGPPPGGPDGVVGVAPDAALISIRQASVAFAPAHPTPEEQSLHRKAGDILSLAKAIRTAADLGAKVINVSLASCTNAAAPVNQDPLGAAVRYAAVDKDAVIVAAAGNRNDPLQPDCGQNPAFNPLNPADPRDWAGVRTIVSPAWFSDYVLSVAAVTPGGLPMPDSINGPWVGVAAPGARIMGLSSVNGAAVNASPAKDPGTGNGMWGTSFSAAYVSGVAALVRAKFPNLTAHQVIRRITETAHNPAHGVDNQVGHGVVDPVAALTFDVTPGDPKPAEHLSSALHVPPPPPGPDLRPRNVALIGVGAAIGLALIVAAVAGIRRRMS
303736..305490                     PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; Mycsm_06784; phage(gi589892228)     1.75e-10            MycobacteriumsmegmatisJS623MKARTVALRPALGAVVAAEVVALAAFTALPPGRSGWWPAAVITAVAVVTLVVTVHRRNAVSWVAAQARWRRQRRFASPVGAAVDINHGGHVYGVRTAGEEAVTMLRIDGRADSPTFLRSAATLHTTNTVPLRVLIDHLEQPGGLHLELDIVNDGYRVVPQSGYPPLYSTLLADRSAAGQRTTWLIVRLILPESVAGLSYRHSIGTAAAAASDRILKALLQQGIRAVPCNAEEHDAALAALGVGLAAPPPRPAVAVADEEIAPDVLEEPGYDELESEVFAGVGAPAEPVADVGEHSDARPVRVRPTANVGWRTINTRPGYLTTYYFSAEDITTESLNAMWALRSDHVVQMTTLRKQRDGKIAVSALVRTTDPQATQQPPTLFLNPLPGDQYSAALAAAPTSRPRLALPRRVLKARDELAIPIGATGVLVGAAISDDPAARPPMQRDDLVMWPLTDPQRATRITMDTSAFYLRQLLIRAAACGERIVIYSEEPRRWYSLAQRHLSVVEPGRHADFVPTIIVNDHSQIVPSAGLSSTVITLGHNPSEAARPDVLFQQTSENTVRITAGARVVDIAMVVFRQEQTWTG
complement(305748..306104)         hypothetical protein; Mycsm_06785                                                    N/A                 MycobacteriumsmegmatisJS623MSISVLGISVDAVDAAGLANFWAQALHRTVDDGATEDFASIAAGADAERGPLLMFHKVPEGKTVKNRLHFDLQAADVRAEADRLMGLGAKEIRSLADNNNRWISFIDPEGNEFDLVAR
complement(306212..306949)         PHAGE_Escher_vB_EcoM_WFC_NC_048195: capsid decoration protein; Mycsm_06786; phage(gi100066)     1.51e-09            MycobacteriumsmegmatisJS623MTAPTDGRDLVGKVALVTGATSGIGQAAALQLAAQGATVIVHGRDVGRGAAVVKEIESAGGSARFVGADLTQPTEALRLATQVGEVDILVNNAGFAWFGPTEKLAANTLNQLFATNVQAPYLLVSVLAPKMVARGHGAIVNVASRAGAVGQPTTAAYGATKAALASLTRSWSAEFGPVGVRVNSISPGPVYTNAAERELFDAIGETTVLRRAGEPQEVADLIGFLASPRASYITGTDVAIDGGRR
