gi|372116212|ref|CP003216.1|  Corynebacterium diphtheriae PW8, complete genome. [asmbl_id: NC_000000].2530683, gc%: 53.70%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
140421..140500                     attL                                                                                 N/A                 TTTTTAATGCTCAAGCTAAAGAAATTTATCCATGAAAAACCTTGCAATTATTGTCCTAATGCGGTGTAAAGTGGACGCCA
152452..153936                     PHAGE_Coryne_BFK20: gp2, terminase; CDPW8_0159; phage(gi157168375)                   2e-116              MYPFQKWALIHGLELLEDGSFRWRVVVIEVARQNGKTMLMVVLGLWRIFQYGASRVLSAAQSLSDAEDTLNEAFLIAAWNPVLRTFLPDNPRSEGEDDKFNGAWRPRANGKASMKLASAPVPGILDVAKTMPIWSLAVTSRKGGRSKSVDLALLDELREHLDWEAWNAIVPTSRNRPQSQVWGFSNAGDQSSVVLRSLRESAIRQIDDGNTTSKTAFFSWSADPEASILDPEAHAQANPSMGYSNITAESIMAEAEDALSGDNEAGFRAEALCQWQQVITPGKIPTKIWESLTDPESHRATDAPVHIGIDVASDGRFSHIAIASQREDGLWHIEIIASRAGFKWVPEWLGRRKAEAWFPGKVGMQIKGSASASLAPLVEEAGIEVIPWQGTSMSASVLGFIDEIRNRGLRHRSQPILNVSIEGAIDRRLGDISIWDRVKSATDVSPTVAANIAWWMATRPDDDQFVSAYADEDYDTAIDYDGDDYDDDDYLLIV
153949..155199                     PHAGE_Coryne_BFK20: gp3, phage portal protein; CDPW8_0160; phage(gi157168376)        2e-109              MGFLQRIGLLPQVTTTPTQHELLAPLLDTYIGVVTEMPTEELFAEQPHLRTVTTFIARAISSTSLHVYRRDPDGGRHRVRDSDLAKLMRRSSKTELMQDMLNGSILDLCLYDEFIWVAMEDSDSGEWELHRIPPTWIKQRKHSDPWTLEWMGIIDAKTGQQIKIPAERIIHVHGYNPTSTSRGLTPVVALRETLKEQLESAAYRGQLWRNGPRLGGVITRPKDAKWDSTSRKRFKAAWQSQYSGRGSGAGGTPILEDGMQFVPAHLKAQDEQVVEMTKLSLQTVASIYHVNPVMVGLLDNANYSNVREFRRSLYGDSLGPIIKQVEGVINEFLRPMIDDDDAVYVEFNLDEKLRASFEEKAAVTSTAVGGPWMTRNEARAMNNLPAIDGGEDLITPLNVTTENSESNNDVGLEEEA
155196..156239                     PHAGE_Coryne_BFK20: gp5, head maturation protease; CDPW8_0161; phage(gi157168378)     2e-99               MTIHVVIGPPCSGKSSFVEANAPAGIGRFDFDNIAGTVAGQDVKNASPNPVANAVLAMRRGLMGWLLDVELDPPEFWLINAQPSPALIAALSARGATFHLCDPGMEECLARAARDGRPQSVEDRIRQWYDNPPELPTKGGHEVKTKSYDVSIDETQTEGTITAYASVFGNVDSYGDVVIPGAFEETLGEWQKSGNTIPLLYGHDFKDPFSNIGGVTSAVEDAHGLKITAQLDLDNPKARQVYNLLKAKRLSQMSFAFDVVEGSWGEREQQEVYELKKVKLYEVSVVPIGANQETSIIDVKAVVAEELANMLDSRQLTKSISNKPPKQGAFALSALDAHLSILEKENR
156236..157486                     PHAGE_Coryne_BFK20: gp6, major capsid protein; CDPW8_0162; phage(gi157168379)        5e-102              MNLKDLLAHRENLMDSAKRARSAITDDMDPADAAQAVENVKSIISEIESTDEAIAARRGVSDVTQKLKGLTITERGTENDSAASRSLGEHFVKAAGDRLKNQAAGAHIEYSVPEYQVKEDAHSSPKDLVEGWGTFYQRGIINQRRERLVAADLMGAATVTASTVKYIVEKANRIASGAPATVAEGTKKPYVKYADFDVVTESLSKAAALAKFTDEMIDDYDFVASWINNNLVYDLSVVEEKQLINGDGRGSNIKGLLNREGIQTHKSAKQADWFNDLFKAKNKVSQATNLEADGIMINPVNYEALRLTKDGNGQYIAGGPFQGQYGNGNILIDPPLWGIKTVVSNAVPAGTAIVGAFRQGATVLRKGGVRVDSANTNADDFENNLVTLRAEERLGLMVPLPAAFVKVTLEETTEEL
157486..157686                     hypothetical protein; CDPW8_0163                                                     N/A                 MRREYEVTTPYGQKLTLEMSEDYKNAHWPDAVLLEDTWPAASSFEAAETKRKTPTRNRAQKPEADK
157708..158190                     PHAGE_Coryne_BFK20: gp8; CDPW8_0164; phage(gi157168381)                              1e-21               MNAITPTPGIDKEAFDRAANAVRRLCGWHIFPIIEETITLDSPGDSLLVLPTKHLVEIINVTIDGTTYPLSDFRSSPDGLLVKRHGRFPRGIAMVTVTMKHGYEKPTEILGVINDMARRANESNLTQLNVGGISVGATNSATPQSSEWRIVDELRLGPLP
158714..159175                     PHAGE_Coryne_BFK20: gp11; CDPW8_0165; phage(gi157168384)                             1e-14               MPMSFRTIVMRNSERRRRNESERSGGQHVVDEKAVIISKLSKLGFPVYSELPHDFEEKHLPVLWVQHVGPAARRQAINSRGIDYVDLDIDLFVSLDMWHTGAAMELAQTIRTHMHRFREGMLKVLDTGRPIARPDFNSTIRRCGLTITVAVPA
159204..160151                     PHAGE_Coryne_BFK20: gp12, major tail protein; CDPW8_0166; phage(gi157168385)         3e-62               MADFDIDTSAANYADELALLGVTGAMSYAPKGTQMPETIAPLNPPFVDFGWLSDGGITESQNEERNDWTPFQSTNPIRGQVTKQDFQFKTVVWSISGLANAMYYGVPESDMRFDQETGVTTFEQGKELPPDFKFGLVVDIVDGKKARRHCMPNVSVVERGDIVYSKDDLVGYEMTFRASYDPVAGYAVRRMFKEGWKPGHAGTTLTDENKDASLGDWSNTLDESEARKQSKTVTLPKGATGGTFTVSINGKASAAINHDATGTAMKLVLNKVDGGESAKVTGRAGGPYTITGVEGEITADGTNLTGSDTQDISIN
160248..160625                     PHAGE_Coryne_BFK20: gp13; CDPW8_0167; phage(gi157168386)                             8e-12               MTIDLNAMLAKRAEVLGEGNKFDVALGDKTFYFVAPELASSEWNDRHQAFLEDIQEGLLTSTTAREEFLGLALEDQAEEFAQVADNIGVDPFIIAQMAFQEHAESVGKTQSQKSLNRTQRRAKRR
160694..160996                     hypothetical protein; CDPW8_0168                                                     N/A                 MLIDHLPENSALHRSQQRETFDGHLWNTELAMMWEMSNLIRITNFLLERSQAKNPNHVQPPKLKLYPWSPDHDIKHYGKVNEEDQVDAVNFLMGLAPPPQ
161006..166648                     PHAGE_Coryne_BFK20: gp15, minor tail protein; CDPW8_0169; phage(gi157168388)         5e-47               MSSDATYVPILASFDGFFKSIDKNAAKAGQQAATTFADSMQRNLQKAERAAEKAGTVLERAHNRAADAAAKTHIEELKLLEIKEKQGAKASEVAAAEAKVEKARRDQEAADKAVAKAAKSLASAQDDVAKATQQAGDAMEVGAEKAGLFSKMTGGLGDKLGTLPALAAGAVAGFAGFAAIKETLLDVGSAFDSAYDTIRVGTGASGEAFAGLQQSMRNVAATNIGIGDDMAAVGTALADVNTRLGLTGEPLEKMTAQMLQLQHMGVDADINAVSQALNGFGIEADAMPAALDSLFQVSQATGLTITELSNSAVKAGPQLRQFGFTMADSAALVGQLDKAGVNADGVLSKMSKALTTFAAEGKDAPKALNETITSIEQLVKAGNSQGAINLAEGIFGAKGAEQFVDAVQTGTLSVEDFMSATGATNDTISGLAAETASFKEHWHQFKMQAMLAIEPVATAVFNMLTPAILNLKDGFTSAIEFVENTLVPGFKKIPDVLETMSQWIEENKNTLIGFAAAISPLVVPLLLGLAAQWTATGIAASISAGQQVRAWIATKIEAVTASAAHIAALWATGAGWIKAGAQAVLGAGQIVGAWLLAKAQSGASLVASIAAVGLGWVKAGIQALAGAAQVAAAWVIGLGPIGWVTAAITAVGAGLVWFFTQTETGKQVWQNFISALQAGWDLFSSALQAGWEWLKAAVFDAWTTRVEQLKSGWETTTRDISASWDWLKDVLHSGWMWISGKVIGGFKTGLNGLRNFFSSVVNGITSTWAMLRSALAKPVNFMINTVYNGGILKAWNVIAGLLPGLKQGNPLAGIPEHAKGGRITGPGTGTSDDVLMWGSNGEHMLTAKEVQRAGGHNAIYFMRDLIASRTPFTWDGGRFIADHRKSVNDYGSEVKRRGIGNVDDNGLFSMLPKFKDGGAIRPMWELQLENGHKAAQSRNGNPYTWGYEDCSGYMSAIADAILHGGRGRRAWATGSFPGGQPWAPGLGKGFSVGVHDNPGGPGGGHTAGTLTGVGPYSTVNVESGGSHGNVAYGGPAIGADHAQFNGVRPGRFHLAIGADGAFETAGSGGVSPQAQRSMIAKAFGGVISTVMDPIAAKLPSSPPAWQSIPRGVYDSGKAALVKGVDNAVNSIEDSLATVYRGTSKIPNLLKEKGPRGIEKKAKIYDRGGILGHGEIAINHGAPERILPPALTASFDKFTTVVPQVADRFGIIADKLLGTKIRETPTAPGSLNAQVDMEKLNDQLSGLHSMADKVVPVLETVNAMGIEGLKGLTHITGAWKEYVSVENSVAKAAEDSKAANEALATARKELADLEREIAKKGPNAKGQAEDSKKLAEARKKVSDAESKAVDSSSALEKALGDVAVGQIKLALSVVSAIAEIGKAIAGAFTAVYEGQSRGWSLVSQMAEEVEKGRQKLSEMRIENANLTIQQIKAINDLRIAQWDTHRAALNGALGIAQAQAELDKRRREGIMLGASGIDAMARAMDRYRKTGIFAIEEVTWYTEEQKRKIKAAEWKVHEARIQSAIDQLDAQGKVELAGLAAAEATLKQHTAVRLLELSAQKLSAQAASFYGVTAQGATALERMNQGKALQGKGAGSIFGGILKGLGGAAGGAAAGFALGGPVGALLGGIAGLLFGGAGQVMNGIAEIKQGRMQESTYKKYAEEELKKLPPEVQKEIHSAGVMGGIASFFGGNGAMIASTPFEAMKIKNQFATWDYEKKLQSMEHDSSIQKQLLATQRAQIEQRLAAQKAALEAERDAAGYHAAAGEADNEGVRQAYDALAQDSARRARDLAETAQRGKSQLDEIVGRLKDLADRSAANIINQGINQTVVVKLEKTGRLHTDQDIAKALEETLNAVKGLEARVEMVEAARAPSALEAAHSQL
166658..167410                     immunity-specific protein beta201; CDPW8_0170                                        N/A                 MQVMFYSPSGQKLFGENGSPAFLLKGGITDLKGAIEARTTVIPEVPGQVFDGVTIKPFTFGVTMVVYPTKEMPMEKAMRKTRQIFSAFDYSTCRIDGTGIPVGLKVRLDSIISAPSQDTAKEIAEEITITLAADEGIFWADRKEASGKIDIVNYGDCDLWPEYRWQKTTTITLPSGAKINLPETPTPRVLRTTRHQVSITDLDGKPDRELLKKLGTVWPEGVPRKETKTYEITQNGYIMWRIGYLDPWGL
168270..169385                     immunity-specific protein beta371; CDPW8_0172                                        N/A                 MDPVIKLVAHAQEMSMTIPRRQACMVYGKLNVTLKKGDVQEERDKRVTDGYVHIPEDMPQGRFDFGFTREDADVNIGTGQSTYELALDTAARRITGQVLFEQDIIAPGFGDWRPLIDFSCGDLVGVRIWGKELVLPVTSITRETTGWRAHVGGQLINDRRKIISENRKILADIESERRERMNEIGAISSVASAASVAAKDADAKAETADGKAEDALEKWRRQKDELDQVQSELIRKNAEWNRLQDVGLKELEAQQEAMKRHVELSRPGTVTADSWDPVWAGPVQVSYPSRNRIQLYLSPSNAIVGASVLGVARVSALSGYSFSFTADIRAGETVTPSVGSFEAFQQVSVTVHPIVNFAAILTEERRKRGLQ
169385..170569                     PHAGE_Gifsy_2: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; CDPW8_0173; phage(gi169257320)     6e-12               MPRLAGKLETITNTPSRVREVLLRAARTRTAGKAVIVDEPVRITVDEAGEFTADIAPGAAVLVLVGADFMARESIPLLVAEGMTTIAEAMEAAETFTPDVHDRLAELAAEVARGVKSTGEAVKSVAADREKAEKSAAAAEESAATASKDAQTAASAWQQVKDRLTQWEARSQQLEKWQPQYEWLKENAEKSFAVVQEKITQATDAIMAQVRGDAESAKRDAATAGQHSLKAQAASKTAESAAQSAADTAVKKLLDGAPQAYDTLKEVADELASQKSAAAALIKQLSEKAATTDLVALRQKVESLTISGVSGLSQALAGKASSSHTHKITDITALQKVLSKHTERINECGVEIDKKADKSGIADIITEVIGINKIEVVDRKPYQPQQGTLYLIKE
complement(170637..170906)         hypothetical protein; CDPW8_0174                                                     N/A                 MSATMPARTNGDRYSPLWHPHSAGLDPPCKPAFTGTSPAAVTSITTTAPTDQNIVYRVRPVRDSQMIGISLSKSMSNRIVVCFPYKIRP
171293..172060                     PHAGE_Mycoba_TM4: hypothetical protein TM4_gp29; CDPW8_0175; phage(gi18496914)       1e-51               MKPNPAHRGDPLFLPEVLRAFGVKVQEWPGWKDRGHGDFGVIQGVFAHHTGTNKDIPGYIASHPDLGLCSQIHLNRDGTAVIVGAGIAWHAGQGSYAGWPTNDANRVSIGIEAASDGTSLWPQAQLDAYYRCCAAILWYLGKPAAPQTLLGHKEYSGAAQGKWDPGGIDMDDFRKKVQHYIDNPPLTNPHKEDAMGLITSLINPKFKFTANSLLSIIDAACWQSLVLLREIAKKQGIDPDMVLEDAIRKDREEKK
172057..172368                     hypothetical protein; CDPW8_0176                                                     N/A                 MSQDVYVAVAKIIVDQPWWARRKETILTVLNGLVWACSVLGAMNGVIPVWGVAVIGAVGSACAALVIALTKAAVTPSMAARIAAAMPAEPVFDLDAERSKLAG
172379..172843                     putative membrane protein; CDPW8_0177                                                N/A                 MPIEHLPKKMQPVALRARAFLMTDSTALLLLAAVQVAVGFYYLPGTFGDPLQWQHPAEMIMPITAWAWVHIGIGSLCGAAAFTDRGHIDVVALAAATGLNLSWTFSLLAAAVEYDQAVLWLVGVLILAMTVSLMWAVWRGKRGDIPFAKEGGAA
172840..173178                     putative secreted protein; CDPW8_0178                                                N/A                 MSVVAAFLSGVGALVTALGGVLIGVVKARSDTHAAKGSRMDVLEARIDKMQADLDDERARRRGVEVDNHRLRMALVTAVKHLEQLIRWADGGAKPPRPDDIDLDEIKSLLKA
173528..175210                     diphtheria toxin precursor; CDPW8_0179                                               N/A                 MSRKLFASILIGALLGIGAPPSAHAGADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDNENPLSGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVLSLPFAEGSSSVEYINNWEQAKALSVELEINFETRGKRGQDAMYEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVIDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIALSSLMVAQAIPLVGELVDIGFAAYNFVESIINLFQVVHNSYNRPAYSPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAENTPLPIAGVLLPTIPGKLDVNKSKTHISVNGRKIRMRCRAIDGDVTFCRPKSPVYVGNGVHANLHVAFHRSSSEKIHSNEISSDSIGVLGYQKTVDHTKVNSKLSLFFEIKS
175268..175340                     tRNA                                                                                 N/A                 GCACAGGTAGAGCAGAATTCGAATCTGACTACGGATCAGAAGGTTGGGGGTTCGAATCCCTCCGGGCGCACAA
175820..177394                     putative membrane protein; CDPW8_0180                                                N/A                 MSTPITHESSSHALAEDAEVHGKNENRRQFTGLFAGLILAVLIYLVFPESSVDMVQGVDPDGEYSYNALRITAAIAVLMGAWWMTEAIPLAATALVPLVAFPVLQVIPFAKISAPYASPTIFLFMGGFILALGMQRWNLHRRLALSVVLLVGTKPKQLIAGFMLATGFLSMWVSNTATAVVMLPIGVSVLQLTAESVGGMKAQKKFATALMLAIAYSASIGSLGTIIGTPPNALMVAYMAENHDIHIGFGTWMLVGVPLAIVYMAIAWLVLVSVFKPEVDSIPGGREMIKSELAKMGSMKFGEAATAVIFTGAALSWVFVPLLIDVFQWKVEIADAAIGLIASMLLFMIPADRKTGVRLMDWKTANELPWDVLLLFGGGLALSKMFSDSGLSLWIGEIAKGLGSLPLILLIAAIAALVLLLTEFTSNTATAATFLPIMAGVAVGIGLNANGDQNILLLTIPVALSATCAFMLPVATPPNAIAYGSGHVRIGDMVKGGVWLNLIGVVLVTLATYFLAIPVFNIVL
177471..177546                     tRNA                                                                                 N/A                 GCGCCCGTAGCTCAACGGATAGAGCATCTGACTACGGATCAGAAGGTTGGGGGTTCGAATCCCTCCGGGCGCACCA
177759..178766                     hypothetical protein; CDPW8_0181                                                     N/A                 MGELDTADRLLEKSKEAFALAVELYSRPTLKYHAESCSIFLCNAWELMLKSYIIRKYGIDEIYYDDGDKTIALTDCLKKVFTNDKDPLRINMAELIRFRNTNTHFITDEYEIFYGPFLQMSVNNYADKLFELHGQSVSDLIPENHLTLAVKRGAIEPEVIRAKYEPHVAKKLLSLSKQAADAAGDGNSGRVAAIYETNFRLVKKARDADLNVYVSADAEDGITIVKDIRDSSSYYPFTANGCIEEVNKRLKKAKVQIQFRDSKKNKFTSHDFQLFIKAYAMKGDPRFSHDRKASNEVNPSWTYSQQAIKHIADELIKDPEKCLDRLKFAVSKKNN
178914..178993                     attR                                                                                 N/A                 TTTTTAATGCTCAAGCTAAAGAAATTTATCCATGAAAAACCTTGCAATTATTGTCCTAATGCGGTGTAAAGTGGACGCCA
complement(178995..180221)         PHAGE_Mycoba_SWU1: integrase; CDPW8_0182; phage(gi388570553)                         2e-14               MATVRDLWTKRNPNTTSKTKRIRSARWGVGKRWQAVWIENGREATKTFETRDEAELWAARAEVGQADGTWITKDKVDITLSDLWEPWLASKGNISDKTKRDYLSYWNVHIRPQWGQTPCAHIQRSVINAWIPTLSTMKSVPASQPPRALSESAMRKVGLIIHGILDLAVELGVIHQNPLRTGDLPKQKKSERRYLKITEVDELIRQAPTEQAKLLLRVLIMTGLRPGEAKGLKVKDLDPVRGRLMIRRDVDDLGREDSTKTRNHRDVPIGGEILVLLDRNAQGKDPDAWLIPDERGKVWTTSRWRVVWKNLCIWTGIGDLDTYELRHTAASIAIAAGADVKTVQLMLGHSSAAMTLDIYAHLWEEGLDAIPGAMEAHMESERKRAEEASTVHEASEAERRRAQFKVIG
