gi|00000000|ref|CP003234.1|  Mycobacterium tuberculosis RGTB423, complete genome. 4406587, gc%: 65.62%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1766223..1766236                   attL                                                                                 N/A                 GTCGTCGTCGAGTA
1778555..1778965                   phiRv1 phage protein; MRGA423_09835                                                  N/A                 MycobacteriumtuberculosisRGTB423MTTTPARFNHLVTVTDLETGDRAVCDRDQVAETIRAWFPDAPLEVREALVRLQAALNRHEHTGELEAFLRISVEHADAAGGDECGPAILAGRSGPEQAAINRQLGLAGDDEPDGDDTPPWSRMIGLGGGSPAEDER
complement(1779254..1779466)       hypothetical protein; MRGA423_09840                                                  N/A                 MycobacteriumtuberculosisRGTB423MALRRLWFHGTKAGIGDRCTEATTLALALLGFRAFQLGDPAASGAICFSENRRISLSSLWVALSIRLSRR
1779697..1779852                   hypothetical protein; MRGA423_09845                                                  N/A                 MycobacteriumtuberculosisRGTB423MGPKPESERRSTKTDTAIGAALGISAGTYRRLKRIDNATRSELAAWAARHP
complement(1779886..1781310)       PHAGE_Gordon_Zirinka_NC_031097: hypothetical protein; MRGA423_09850; phage(gi100006)     4.00e-77            MycobacteriumtuberculosisRGTB423MTEFDDIKNLSLPETRDAAKQLLDSVAGDLTGEAAQRFQALTRHAEELRAEQRRRGREAEEALRRYRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDSCVRDGLMSSRAGGDRGNLVPHRAAAVHLVGAALAGGHRQPRLFGRVRQAGFQSCCGAHRFGPTGKRPRGVRLPRWPPEQRAMGLVDTQGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEIWRGVTSEGAEARWYSEAQEVSDDSPALAQPAVPNYRGSCWIPFSIELEGDAASFVGEIGKILADSVEQLQAAAFVNGSGNGEPTGFVSALTGTSDQVVVGAGSEAIVAADVYALQSALPPRFQASAAFAANLSTINTLRQAETSNGALKFPSLHDSPPMLAGKSVLEVSHMDTVDSAVTATNHPLVLGDWKQFLIVDRVGSMVELVPHLFGPNRRPTGQRGFFACFRVGSDVLVRNAFRVLKVETTA
complement(1781318..1781830)       PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; MRGA423_09855; phage(gi100007)     4.91e-11            MycobacteriumtuberculosisRGTB423MAELRSGEGRTVHGTIVPYNEATTVRDFDGEFQEMFAPGAFRRSIAERGHKLKLLVSHDARTRYPVGRAVELREEPHGLFGAFEIADTPDGDEALANVKAGVVDSFSVGFRPIRDRREGDVLVRVEAALLEVSLTGVPAYSGAQIAGVRAESLTVVSRSTAEAWLSLLDW
complement(1782004..1782474)       PHAGE_Gordon_Kita_NC_031233: methyltransferase type 11; MRGA423_09860; phage(gi100001)     5.45e-47            MycobacteriumtuberculosisRGTB423MPRPPKPARLKLVDGRSPGRDSGGRKVPESPKFIRQAPDAPDWLDAEALAEWRRVAPTLERLDLLKPEDRALLSAYCETWSVYVAAVQRVRAEGLTITSPKSGVVHRNPAVTVAETARMHLLRLASEFGLTPAAEQRLAVAPGDDGDGLNPFAPDR
complement(1782555..1782869)       phiRv1 phage protein; MRGA423_09865                                                  N/A                 MycobacteriumtuberculosisRGTB423MTPINRPLTNDERQLMHELAVQVVCSQTGCSPDAAVEALESFAKDGTLILRGDTENAYLEAGGNVLVHADRDWLAFHASYPGNDPLRDARPIEQDDDQGAGSPS
complement(1782866..1783138)       phiRv1 phage protein; MRGA423_09870                                                  N/A                 MycobacteriumtuberculosisRGTB423MAETPDHAELRRRIADMAFNADVGMATCKRCGDAVPYIILPNLQTGEPVMGVADNKWKRANCPVDVGKPCPFLIAEGVADSTDDTIEVDQ
1783240..1783605                   hypothetical protein; MRGA423_09875                                                  N/A                 MycobacteriumtuberculosisRGTB423MDKALYTAGVRWGPTARNNALAQVGALLLRRVGGSGDGVAVVAQLGGQQWGPVSVDEPAAGVRGPGAGIGGDRGLDQRHDRRVVGESDAVPTAGCRGDRDSGHAAPPVFAGLAVQSARWRP
complement(1785161..1785559)       phiRv1 phage protein; MRGA423_09890                                                  N/A                 MycobacteriumtuberculosisRGTB423MTAGAGGSPPTRRCPATEDRAPATVATPSSADPTASRAVSWWSVHEHVAPVLDAAGSWPMAGTPAWRQLDDADPRKWAAICDAARHWALRVETCQEAMAQASRDVSAAADWPGIAREIVRRRGVYIPRAGVA
complement(1785556..1785777)       PHAGE_Mycoba_Larva_NC_023724: gp40; MRGA423_09895; phage(gi593778559)                4.39e-06            MycobacteriumtuberculosisRGTB423MSTIYHHRGRVAALSRSRASDDPEFIAAKTDLVAANIADYLIRTLAAAPPLTDEQRTRLAELLRPVRRSGGAR
complement(1785833..1786354)       phiRv1 prophage protein; MRGA423_09900                                               N/A                 MycobacteriumtuberculosisRGTB423MAMSRHHNIVIVCDHGRKGDGRIEHERCDLVAPIIWVDETQGWLPQAPAVATLLDDDNQPRAVIGLPPNESRLRPEMRRDGWVRLHWEFACLRYGAAGVRTCEQRPVRVRNGDLQTLCENVPRLLTGLAGNPDYAPGFAVQSDAVVVAMWLWRTLCESDTPNKLRATPTRGSC
1786184..1786197                   attR                                                                                 N/A                 GTCGTCGTCGAGTA
complement(1786345..1787559)       PHAGE_Mycoba_PegLeg_NC_021299: integrase; MRGA423_09905; phage(gi508177970)          5.90e-53            MycobacteriumtuberculosisRGTB423MLADITAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVARLKGSVAAHETEHKKARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYADILAGASLGDVCRQWNDAGAFTITGRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKSVRRHLLTGLAGCGKCGNHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRREIHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPLGTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR

#### region 2 ####
2968585..2968596                   attL                                                                                 N/A                 GATCTGCCCTGT
2970541..2971017                   PHAGE_Mycoba_Halo_NC_008202: integrase; MRGA423_16540; phage(gi109392319)            1.29e-12            MycobacteriumtuberculosisRGTB423MNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEDGLNGWSG
2971150..2971476                   PHAGE_Gordon_Cucurbita_NC_031029: hypothetical protein; MRGA423_16545; phage(gi100019)     1.15e-29            MycobacteriumtuberculosisRGTB423MSGGSSRRYPPELRERAVRMVAEIRGQHDSEWAAISEVARLLGVGCAETVRKWVRQAQVDAGARPGTTTEESAELKRLRRDNAELRRANAILKTASAFFAAELDRPAR
2971527..2972411                   PHAGE_Stx2_c_Stx2a_WGPS9_NC_049923: hypothetical protein; MRGA423_16550; phage(gi100002)     6.93e-95            MycobacteriumtuberculosisRGTB423MRWGVESICTQLTELGVPIAPSTYYDHINREPSRRELRDGELKEHISRVHAANYGVYGARKVWLTLNREGIEVARCTVERLMTKLGLSGTTRGKARRTTIADPATARPADLVQRRFGPPAPNRLWVADLTYVSTWAGFAYVAFVTDAYARRILGWRVASTMATSMVLDAIEQAIWTRQQEGVLDLKDVIHHTDRGSQYTSIRFSERLAEAGIQPSVGAVGSSYDNALAETINGLYKTELIKPGKPWRSIEDVELATARWVDWFNHRRLYQYCGDVPPVELEAAYYAQRQRPAAG
2972688..2972700                   attL                                                                                 N/A                 CGCTGGGAGCCGA
complement(2973231..2973764)       PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; MRGA423_16565; phage(gi100007)     1.81e-10            MycobacteriumtuberculosisRGTB423MSSILFRTAELRPGEGRTVYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDARTRYPVGRAVELREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDVIVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVSRSLAEARLALMDW
complement(2973900..2974808)       PHAGE_Mycoba_Equemioh13_NC_028852: integrase; MRGA423_16570; phage(gi971749513)      1.23e-55            MycobacteriumtuberculosisRGTB423MTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVFGCCAGGGGGPRRRRVQPVRPRPVMTFCV
2975843..2976076                   PHAGE_Gordon_Zirinka_NC_031097: holin; MRGA423_16575; phage(gi100034)                2.93e-05            MycobacteriumtuberculosisRGTB423MEVRASARKHGINDDAMLHAYRNALRYVELEYHGEVQLLVIGPDQTGRLLELVIPADEPPRIIHANVLRPKFYDYLR
2976087..2976341                   PHAGE_Gordon_GMA5_NC_030907: hypothetical protein; MRGA423_16580; phage(gi100018)     2.93e-05            MycobacteriumtuberculosisRGTB423MKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFGPHSTASP
2977061..2977864                   PHAGE_Paenib_Vegas_NC_028767: transposase; MRGA423_16585; phage(gi971741608)         3.45e-49            MycobacteriumtuberculosisRGTB423MTSSHLIDTEQLLADQLAQASPDLLRGLLSTFIAALMGAEADALCGAGYRERSDERSNQRNGYRHRDFDTRAATIDVAIPKLRQGSYFPDWLLQRRKRAERALTSVVATCYLLGVSTRRMERLVETLGVTKLSKSQVSIMAKELDEAVEAFRTRPLDAGPYTFLAADALVLKVREAGRVVGVHTLIATGVNAEGYREILGIQVTSAEDGAGWLAFFRDLVARGLSGVALVTSDAHAGLVAAIGATLPAAAWQRCRTHYAANHGRHNA
2977886..2978644                   PHAGE_Mycoba_Myrna_NC_011273: gp251; MRGA423_16590; phage(gi203454812)               1.77e-21            MycobacteriumtuberculosisRGTB423MPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG
2990282..2990294                   attR                                                                                 N/A                 CGCTGGGAGCCGA
2991092..2991103                   attR                                                                                 N/A                 GATCTGCCCTGT

#### region 3 ####
3821266..3821277                   attL                                                                                 N/A                 TGGCCGGGTCGA
3829491..3829799                   PHAGE_Mycoba_Macncheese_NC_042338: minor tail protein; MRGA423_21510; phage(gi100056)     9.24e-13            MycobacteriumtuberculosisRGTB423MPQPEQLPGPNADIWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSHALEVGEPYGVWGGLSESERDLLLKGTMGRTRGIRRTA
complement(3829816..3831495)       PHAGE_Vibrio_VAP7_NC_048765: hypothetical protein; MRGA423_21515; phage(gi100134)     1.96e-98            MycobacteriumtuberculosisRGTB423MSKLIEYDETARRAMEVGMDKLADTVRVTLGPRGRHVVLAKAFGGPTVTNDGVTVAREIELEDPFEDLGAQLVKSVATKTNDVAGDGTTTATILAQALIKGGLRLVAAGVNPIALGVGIGKAADAVSEALLASATPVSGKTGIAQVATVSSRDEQIGDLVGEAMSKVGHDGVVSVEESSTLGIELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLAGGVAVIKVGAATETALKERKESVEDAVAAAKAAVEEGIVPGGGASLIHQARKALTELRASLTGDEVLGVDVFSEALAAPLFWIAANAGLDGSVVVNKVSELPAGHGLNVNTLSYGDLAADGVIDPVKVTRSAVLNASSVARMVLTTETVVVGRQAGQGRRSRPSPRARGTELRSADAKAPDTPSVRGL
complement(3831590..3831892)       PHAGE_Bacill_0305phi8_36_NC_009760: GroES; MRGA423_21520; phage(gi156564025)         1.50e-17            MycobacteriumtuberculosisRGTB423MAKVNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK
complement(3832159..3833193)       PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: methyltransferase type 11; MRGA423_21525; phage(gi100001)     5.33e-77            MycobacteriumtuberculosisRGTB423MTTVLGIETSCDETGVGIARLDPDGTVTLLADEVASSVDEHVRFGGVVPEIASRAHLEALGPAMRRALAAAGLKQPDIVAATIGPGLAGALLVGVAAAKAYSAAWGVPFYAVNHLGGHLAADVYEHGPLPECVALLVSGGHTHLLHVRSLGEPIIELGSTVDDAAGEAYDKVARLLGLGYPGGKALDDLARTGDRDAIVFPRGMSGPADDRYAFSFSGLKTAVARYVESHAADPGFRTADIAAGFQEAVADVLTMKAVRAATALGVSTLLIAGGVAANSRLRELATQRCGEAGRTLRIPSPRLCTDNGAMIAAFAAQLVAAGAPPSPLDVPSDPGLPVMQGQVR
complement(3833190..3833666)       PHAGE_Pseudo_vB_PaeS_PAO1_Ab19_NC_042115: hypothetical protein; MRGA423_21530; phage(gi100011)     7.53e-06            MycobacteriumtuberculosisRGTB423MTADTEPVTIGALTRADAQRCAELEAQLFVGDDPWPPAAFNRELASPHNHYVGARSGGTLVGYAGISRLGRTPPFEYEVHTIGVDPAYQGRGIGRRLLRELLDFARGGVVYLEVRTDNDAALALYRSVGFQRVGLRRRYYRVSGADAYTMRRDSGDPS
complement(3833663..3834298)       PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; MRGA423_21535; phage(gi16129761)     4.51e-11            MycobacteriumtuberculosisRGTB423MSRVQISTVLAIDTATPAVTAGIVRRHDLVVLGERVTVDARAHAERLTPNVLAALADAALTMADLDAVVVGCGPGPFTGLRAGMASAAAYGHALGIPVYGVCSLDAIGGQTIGDTLVVTDARRREVYWARYCDGIRTVGPAVNAAADVDPGPALAVAGAPEHAALFALPCVEPSRPSPAGLVAAVNWADKPAPLVPLYLRRPDAKPLAVCT
complement(3834295..3834801)       hypothetical protein; MRGA423_21540                                                  N/A                 MycobacteriumtuberculosisRGTB423MSREGIRRRPKARAGLTGGGTATLPRVEDTLTLGSRLGEQLCAGDVVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLDHNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRHLDVRLERVSHSDTRIATWSWGRS
complement(3836930..3837211)       hypothetical protein; MRGA423_21555                                                  N/A                 MycobacteriumtuberculosisRGTB423MLAISLRLSSRLLAILLAVGGDLLRGYHLPTCVVIGVREAVDHPGGMLKLTGVFRQPLEIPLNRVGQQVRRTTFPVLIQLVELVLERLSRRFN
complement(3837362..3837592)       hypothetical protein; MRGA423_21560                                                  N/A                 MycobacteriumtuberculosisRGTB423MSLCRFGFQLDQSNLKLDQSNLTCKRISSIFNHGVKRLIHLKPRCVVRARKRWAWSTVALLLACKTAPASWTYPPL
3837645..3838175                   PPE family protein; MRGA423_21565                                                    N/A                 MycobacteriumtuberculosisRGTB423MHLMIPAEYISNVIYEGPRADSLYAADQRLRQLADSVRTTAESLNTTLDELHENWKGSSSEWMADAALRYLDWLSKHSRQILRTARVIESLVMAYEETLLRVVPPATIANNREEVRRLIASNVAGVNTPAIADLEAQYEQYRAENIQAMDRYLSWTRFALSKLPRWREPPQIHRSG
3840386..3840397                   attR                                                                                 N/A                 TGGCCGGGTCGA
complement(3840664..3840861)       integrase catalytic domain-containing protein; MRGA423_21590                         N/A                 MycobacteriumtuberculosisRGTB423MLDLVELLTHWHAGRSQVRLSESLGIDRKTVRKYTAPAIAAGIEPGGEPLSAEQWAELIGGWFPE
