gi|00000000|ref|CP003302.1|  Escherichia coli O104:H4 str. 2009EL-2071 plasmid pAA-09EL71, 75573, gc%: 47.17%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
604..617                           attL                                                                                 N/A                 GTCTTACCCACACC
complement(829..1635)              PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; O3O_25867; phage(gi764159894)     5.05e-07            MSGSVIHSQSAAMVPAVYSAGQFPQLPVVIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDTGYVSQLQTMVATLKIPLERRNKRTGRTEKARIWEVTDRTVRTWIGEAVVAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFSMPESDAVSMLKRIP
complement(1636..1941)             plasmid maintenance protein CcdB; O3O_25872                                          N/A                 MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHVGDESWRMMTTDMASVPVSVIGEEVADLSHWENDIKNAINLMFWGI
complement(1943..2161)             plasmid maintenance protein CcdA; O3O_25877                                          N/A                 MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWQAENQEGMAEVAKFIEMNGSFADENRDW
2756..2986                         hypothetical protein; O3O_25882                                                      N/A                 MRTVSIFKNGNNRAIRLPRDLDFEGVSELEIVREGDSIILRPVRPTWSSFAALEKADADFMAEREDIVSDEGRFDL
2983..3411                         hypothetical protein; O3O_25887                                                      N/A                 MKQTRTKTYMLDTNICSFIMREQPAAVIKRLEQAVLRNHRIVVSAITYAEMRFDATGPKASPRHIALVDAFCARLDAILPWDRAAVDATTEIKMALRLAETPIGPNNTAIAGHAIAAGAILVTNNTREFERVPDLVLEDWVK
complement(3494..3649)             PHAGE_Stx2_c_1717_NC_011357: transposase; O3O_25892; phage(gi209447153)              5.34e-18            MCALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVGELLPWNVVLTNK
4735..5712                         PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; O3O_25897; phage(gi410491479)     1.22e-134           MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNTLSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVTGDKVELPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSAYYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKLFCIHYRRPRLKAPNDESKENPLPPSPVEKVSPEMAEKLALLEKLGITLDDLEKLFKSR
complement(5991..6731)             PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; O3O_25902; phage(gi971744895)     9.03e-06            MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRIQSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTLPPLK
complement(7100..7261)             hypothetical protein; O3O_25907                                                      N/A                 MSNHNIGTPRPELGEYTFALPVERHMVYFLQTDTEIVIIRILSQHQDASRHFN
complement(7463..7708)             hypothetical protein; O3O_25912                                                      N/A                 MWGQLNIACRVKFKLTITRLDMARTMTVALGDELWEYIESLIESGDYRTQSEVIRESLRLLREKQAESRLQVSCGIYWQKA
complement(7714..7989)             hypothetical protein; O3O_25917                                                      N/A                 MELKWTSKALSDLSRLYDFLVLASKPAAARTVQSLTQAPVILLTHPRMGEQLFQFEPREVRRIFAGEYEIRYEINGQTIYVLRLWHTRENR
complement(7989..8273)             hypothetical protein; O3O_25922                                                      N/A                 MQMKNNAAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQALSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAWSDSLSTDNPLPVPR
complement(9181..9843)             replication protein; O3O_25927                                                       N/A                 MLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECGLATESGAGKLSITRATRALTFLSELGLITYQTEYDPLIGCYIPTDITFTPALFAALDVSEDAVAAARRSRVEWENRQRKKQGLDTLGMDELIAKAWRFVRERFRSYRTELKSRGIKRARARRDANRERQDIVTLVKRQLTREISEGRFTANGEAVKREVERRMKERMILSRNRNYSRLATASP
complement(9821..10009)            replication protein; O3O_25932                                                       N/A                 MTDLQQTYYRQVKNPNPVFTPREGAGTLKFCEKLMEKAVGFTSRFDFAIHVAHATGAASTGY
complement(10002..10076)           leader peptide RepL; O3O_25937                                                       N/A                 MTGKVQDFFLCSLLLRIVSAGWCD
complement(10314..10568)           replication protein; O3O_25942                                                       N/A                 MSQTENTVTSSSGAKRAYRKGNPLSDAEKQRLSVARKRASFKEVKVFLEPKYKAMLMQMCNEDGLTQAEVLTALIKSEAQKRCM
10849..11829                       PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; O3O_25947; phage(gi16129935)     0.0                 MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVKTLKQHPRKNKTAINIEYMKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSH
complement(12237..12407)           hypothetical protein; O3O_25952                                                      N/A                 MDAGWKLQKHGDGLPVLRPGQTGSSLPEKGLNTATGAAGEGCNEKSSLHYSRDSEG
12557..13234                       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; O3O_25957; phage(gi209447151)     1.93e-23            MSIIFNGHYRMKHRTWITEALRLHFEEHLPRVVAGRRLGVPKSTVCSMFVRFRRAGLSWPLPAGMSEQELDACLYGQFSTVPVVRPESTVISEAPVVKKRPRRPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNMPALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQTLIREIKGSSH
13234..13581                       PHAGE_Stx2_c_1717_NC_011357: transposase; O3O_25962; phage(gi209447152)              3.71e-57            MISLPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFIFRGRRGDQIKVLWADSDGLCLFTKRLERGRFVWPVTRDGKVHLTPAQLSMLLEGINWKHPKRTERAGIRI
13601..15172                       PHAGE_Stx2_c_1717_NC_011357: transposase; O3O_25967; phage(gi209447153)              0.0                 MDTSLAHENARLRALLQTQQDTIRQMAEYNRLLSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETLGEQYDPVLPSALRQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAAPLMQSLYDWIQQQMKTLSRHSDTAKAFAYLLKQWDALNVYCSNGWVEIDNNIAENVLRGVAVGRKNWMFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSSQ
complement(15226..15411)           PHAGE_Stx2_c_1717_NC_011357: transposase; O3O_25972; phage(gi209447153)              1.85e-27            MFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWNVVLTNK
complement(15485..15781)           PHAGE_Stx2_c_1717_NC_011357: transposase; O3O_25977; phage(gi209447152)              1.07e-39            MISLPSGTRIWLVAGVTDMRKSFNGLGEQIQHVLDDNPFSGHLFIFRGRRGDTIKILWADADGLCLFTKRLEEGQFIWPAVRDGKIYQEALGCVVQLL
complement(15778..16212)           PHAGE_Stx2_c_1717_NC_011357: truncated transposase; O3O_25982; phage(gi209447151)     5.45e-12            MDKPTDWRFGTRRIFSNEFKLHMVELASKPNANVAQLAREHGVDNNLIFKWLRLWQREGRISRRMPPTIVGPTVSQSFPASPTLVPVELIDTPRCATDAPAPEALSVACAASCHVEFHYGKMMLENPSPELLTVLIRELTGRGR
complement(16441..17001)           PHAGE_Sinorh_phiM9_NC_028676: putative ProQ/FINO family protein; O3O_25987; phage(gi966199408)     2.03e-05            MTEQKRPVLTLKRKTEGETPVRRRKTIINVTTPPKWKVKKQKLAEKAAREAELAAKKAQARQGLSIYLNLPSLDEAVNTLKPWWPGLFDGDTPQLLACGIRDVLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEAYAAARLDKIRRQNRIKAELQAVLYEK
complement(17056..17802)           PHAGE_Xantho_Cf1c_NC_001396: hypothetical protein; O3O_25992; phage(gi17975752)      2.05e-05            MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLMVLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHANIRQPAINRLWGWGIIAQFAYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAGLLMLAVSHRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVSCAGKSLPRFWPGDFFPVFYACHLAVLGVLAL
complement(17822..17959)           conjugal transfer nickase/helicase TraI; O3O_25997                                   N/A                 MLRESQREREAVREIARENLLQERLQQMERDMVRDLQKEKTLGGD
complement(18035..21748)           PHAGE_Mycoba_Adler_NC_023591: hypothetical protein; O3O_26002; phage(gi589892239)     9.54e-07            MAELVMMAREQGREVQIIAADRRSQMNLKQDERLSGELITGRRQLQDGMTFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMPVADGERLRVTGKTPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPATLPVADSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETSLETAISLQKAGLHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERVPGELMETLTSGQRAATRMILEASDRFTVVQGYAGVGKTTQFRAVMSAVNMLPASERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWEKNPDALALVDSVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYTPDKIRVGTGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKQMAGFESAYVALSRMKQHVQVYTDNRQGWTDAINNAVQKGTAHDVFEPKPDREVMNAQRLFSTARELRDVAAGRAVLRQAGLSGGDSPARFIAPGRKYPQPYVALPAFDRNGRSAGIWLNPLTTDDGNGLRGFSGEGRVKGSEDAQFVALQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRVWGDIPDSSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPDGKTE
20097..20110                       attR                                                                                 N/A                 GTCTTACCCACACC
complement(21753..22427)           conjugal transfer nickase/helicase TraI; O3O_26007                                   N/A                 MWEIPGVPVEAFSGRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQMLKETGFDIRAYRDAVDQRVETRTQAPGPASQDGPDVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMKQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGSRRAA
22549..22824                       PHAGE_Entero_P1_NC_005856: InsA; O3O_26012; phage(gi46401643)                        4.10e-62            MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR
22982..23248                       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; O3O_26017; phage(gi557307573)        3.92e-57            MATLGRLMSLLSPFDVVIWMTDDWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
