gi|00000000|ref|CP003341.1|  Rickettsia parkeri str. Portsmouth, complete genome. 1300386, gc%: 32.43%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(710065..711195)         PROPHAGE_Escher_CFT073: transposase; MC1_04020; phage(gi26246249)                    3.68e-137           RickettsiaparkeristrPortsmouthMDQKQNAAMNQAIDLLINNDTDISTLLKEDGLLKQLTKRLVENALQSEMNNHLGYDKYCHTDSDNVRNGKNVKNLVTNNGVVEIEVPRDRSSTFEPALIPKRQRRIEGFDDKIISLYAKGMSLSDIKIQMQELYGADVSESLISQITDDVIEGVKIWQSRPLDRVYAIIFFDCLVVKVRQDKRIINKSVYVALGIDLSGRKDILGLWISENEGAKFWLGNFTEMKNRGMQDMLIACSDNLTGMSEAIEAVFPKTEHQLCIVHQIRNSLKYVSYKDRKELAADLKPIYTTSTEEEAHLALESFEAKWSKQYPQIAKSWYVHWENLMVFLGYPEAIRKVIYTTNSVESVNSQLRKVTKNKRVFPNDNAVFKTLYLAID
complement(711603..711968)         PHAGE_Pseudo_phi3_NC_030940: protector from prophage-induced early lysis; MC1_04025; phage(gi100001)     1.18e-12            RickettsiaparkeristrPortsmouthMKIEWKRSFSWAIDKVIDNLNPSIMGWCSYFNKVISKRTFTQLDRWMWMRQARFVCRRHPNKYWWWLKEKYWGRIKARNDNWVFMDKSKDLYLWKLQWTAIKRHILVKGKASPDNPELKEY
complement(712276..712383)         RNA-directed DNA polymerase; MC1_04030                                               N/A                 RickettsiaparkeristrPortsmouthMEEYQFTKTTVGTPKGGVISPLLLNTALHGMEDIT
complement(712487..713059)         PHAGE_Pseudo_phi3_NC_030940: protector from prophage-induced early lysis; MC1_04035; phage(gi100001)     2.03e-25            RickettsiaparkeristrPortsmouthMQNANVTIKTDNNNFEKIYWYAINWQEVNKKVNNLRRRIYRASANGNMKLVRSLQKLMLKSRSNKLLAIRRITQINRGRRSPGIDKIVVNTDKERNLLMEKLANNNLSSVKPIKRVYIPKRKGKLRPLGLPIILDRCMQAVVKSALEPFWEAKFEGSSYGFRPWTQHPRCNTENFCYCLPWHNQGMDTGR
713785..717921                     PHAGE_Sulfit_EE36phi1_NC_012696: DNA helicase; MC1_04040; phage(gi237651507)         9.06e-10            RickettsiaparkeristrPortsmouthMAIQFARIEIVGRSSGGNACLKAAYNARLTIKDERINVTYNFSKKGDNVYHAVLLPTLVDQKFKDSSVLMNEVERTEKRKNSQLLKDVVIALPDDKELDLQDRIAITHEIIEEMAWVKNGLGVQVDIHQPHDGEKNWHAHLLVTTRRFTEDGKSLGAKAVDLNPKFAKVSGKAFIIPEDKIIHERAKEVINKYFAKLDLDIRVDRISFVPQQHVGPTRMRNIINEISEQNKICNLAHLEIIKGADGVLDRIIRHQAIFTKFDIAKAVKEIPEKEEKLKLLRDVLNSDRLIKLYNADATDTKYYTTHDVREEELRIVRIADKVNSQMHFSNVLKIKSDIANITSVNEAQRASLQHILINSQGIRILRGRAGTGKSQVLAEAYKIATNHGQNVIGLSPTHKAASELKSKGYRQCYTVKGFLFRLYNGKAELPRNTTLVVDEAGMVGNSDYLELLKVARNNNCNLILAGDERQLTSVEQGGMFAILANKFGSYELSSIRRQNKLWAREMASCFAQSDITGGLHLLKQHNCLKVDHTLAESMARLINDWSNSKFAIDERLIITMRNAEVDSINQGIRELLKAQGFLTGQEYRHYVSSEKYEDYMAGDRILFKTTNKNLQIDNGDFATITSVSNDRFIAKTDNGKEVAFNPREVGFKHGYASTVYKAQGSSIKDVYVLHNLAGNSRNSYVAMTRHIEEVKLYSNRETTKDMASLISQLSKSDNNLASINFKSLEELRTQEIKHNTGLPGIIIKIGNWFKWVVEDIHDRSHSNDNYYHPKILSNTASKIKNIFGNTKNLYQHHNAQEEIRTSSDNLKHHNQKDTITKIKLQEDVMAKNKIDYNAINKQETVELKQRVSFKAEEIGRNLLGSPNKHLSNSQLLRWDQDGKIAMKINGSKAGIWYDFSKGEGGDLFTLVQREKNCDFVEAKKYLQDMVSMSTKVDEALAVNLSTNKKRQIKTQTEQEAEIAKIKMAEMLYEKSEDLKYVMPNNVATRYLSEHRGIQDVLTKYQLSFDLRTNMMWDSNSKQYYPALIAFARSKDGNVTGGQAIYLNKETNNKAEIAINKSSFGKIKGSFVEISKNHEEQKNIPSSNDSNNAANNVTIIAEGLETSLSIKEAGIKGKILCSLGVSNIRNYEPLKGEKILIAADNDGKDAVSVRTVIKAAEELMRKGAVVAIIQPPEKGDFNDMLKSQGAESIKNLIDPEIAKLISDSKVAALQSSLKANDNSKTSFQPIELLFTKLKNQDNSELSHLQQQQIKALAKFGTAENINTALQIYREKGVDSCMLYSQKICIAAIEQKIQKDLQIMKNKFDPNYNLGNNRFSDIVVRDFQGKSHLLPEDYLVAIGKDKQVMQYINPASEIDKAIKAEIQNAAEIKLNQGIRV
717933..718925                     PHAGE_Sodali_phiSG1_NC_007902: transposase; MC1_04045; phage(gi89886005)             1.53e-43            RickettsiaparkeristrPortsmouthMVLLYESNNKSYMAKKLKHDALVKKILTEKIAAQEFLEHYLPSDFKELIDLREITVEKESFVEDDLKRKYSDIIYSVKTRDQEKAFVYVLIEAQSSCDYWIALRLWKYMLLLCERHENNKNKLPLICPLLIYNGSEVYNAPRNFWELFTKPERAKKLMVQDYQLVDLQNQSDDEIEQKKHLGMMEYFLKHIHQRDMLKLWDEFLIRFKPSIIMDKESGYIYLRSFLWYTDAKISEEKQQELEQIIVKHLSTEEKDNIMRTIAQKYIDEGVQHGIIQGIQQGIEKGKAEGKAEENIRVKTEIARKMLSQGCDFSLISSVTGLEEAFIRSLS
complement(719163..719666)         putative conjugative transfer protein TraD; MC1_04050                                N/A                 RickettsiaparkeristrPortsmouthMIKALMDRNINNINQNMWFIIDELPSLQKIPALSVALAEGRKYGGCFVAGVQNIYQLEEIYGLAGAASMLDLFGSKFIFRVSDYQTAHRSALMLGEQEIIETQESPSYGANTMRDGVNINHLEKKKLLVMPSEIMNLPDLTCYVKLVGNVPITKLQMNLQTDFNPKI
720422..720820                     conjugal transfer protein TraA; MC1_04055                                            N/A                 RickettsiaparkeristrPortsmouthMQQQQITALAKFGTAENIDTALQIYREKGIDSCMLYSNKICIAAIEKKIQQDLQIMKNKFDPNYNLGNKRFSDIVVYDFQGKSHLMPEDYLNAIGSDKQVMQYVSPSSKIGKEIRSVVKQASEVNLSQGIRV
720858..721901                     PHAGE_Sodali_phiSG1_NC_007902: transposase; MC1_04060; phage(gi89886005)             3.24e-51            RickettsiaparkeristrPortsmouthMSKQGNLLGDPDKGTKKAKHDKIFRKALENPLVAHEFFNAHLPKEIKALIDFPSLAMENTTFIESSLKDSISDVLFSCKFDKQDGYLFLLVEHQSTADHFMAFRLFKYMINICERYLIQNPKAKTLPLIYPMIFYNGQEKYNVARNLWDLFANNKLARELWINDYQLVNVHEIPDEKFKQRIWSGILEFFLKHIHERELLKRWQEISDILPELTKITIGYDYLEMILCYSLTKIEQADKIKLESLLSTKLNPEIGTRLMRSLAEHWQQEGKELGVLEGLQVGEAKGIQIGEARGEARGKAEGKAEGKAEGEYNKAVEVAKKMLAQGCNISLISSVTGLDEVFIRSLE
