gi|545582967|ref|CP003604.1|  Staphylococcus aureus subsp. aureus SA40, complete genome. [asmbl_id: NC_000000].2728308, gc%: 32.86%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
844349..845374                     PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; SA40_0751; phage(gi371496158)        2e-30               MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
845367..846062                     PHAGE_Bacill_G_NC_023719: gp243; SA40_0752; phage(gi593777699)                       9e-09               MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
846080..846901                     putative lipoprotein; SA40_0753                                                      N/A                 MKKLFGLILVLTFAVVLAACGNGSKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
846960..846971                     attL                                                                                 N/A                 TTGAAAATAAAA
complement(847044..848264)         PHAGE_Staphy_PT1028_NC_007045: ORF002; SA40_0754; phage(gi66395166)                  2e-106              MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
complement(848353..849081)         PHAGE_Staphy_phiN315_NC_004740: enterotoxin P; SA40_0755; phage(gi30043936)          2e-27               MKKLISILLINIIILGVSNSASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVAAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
complement(849105..849833)         PHAGE_Staphy_phiNM3_NC_008617: enterotoxin type A precursor; SA40_0756; phage(gi118725111)     6e-32               MNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYDDNKTIDTENFHLDVEISYEKTE
complement(849903..850334)         PHAGE_Staphy_37_NC_007055: ORF039; SA40_0757; phage(gi66395766)                      2e-39               MRKLLGLALASTLILGACGSNDGDKKEESKSYTTNDIVKGFKDNKLNVINEKEMTREDFGLAPMKTDEAKMFVVQDDKNARVMKFKNSDDLKQTKKYYDELGKESAAFYSHTHSKGKFLIQMNGDIDDATFNKYKNSMDKTLK
complement(850351..850809)         PHAGE_Staphy_55_NC_007060: ORF028; SA40_0758; phage(gi66396141)                      4e-68               MYLYEKMVIENKEIPIDDGKSLGNFEGLYDNGVILINKNLSERRKAEVLYEELAHHKLTYGNILDQSKFNNRKFENYARRHGFISAVPLREIVEAYNYGVRNLYELSEYLQLSEEYILEAIEQYKKIYGIGTHYGEYSITFEPLRVFKYKEI
complement(850821..851153)         PHAGE_Lactoc_bIL286_NC_002667: repressor; SA40_0759; phage(gi13095747)               1e-21               MRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTREFPLNRAEDFAKVLGIKTEYLLGFAEREESTKQDTIAAHLDGDFTEEELIEIRKYAELVRKAHRNQ
851346..851609                     PHAGE_Lactob_A2_NC_004112: Cro protein; SA40_0760; phage(gi22296546)                 3e-26               MVLNLKRLRAERIACGITQDEMAHKMGWKTRTPYAKRENGIVDIGANEFIKMAKILGYETNNLDIFFTNNVPRKERKNILKGGELNV
851602..851874                     PHAGE_Staphy_PT1028_NC_007045: ORF019; SA40_0761; phage(gi66395183)                  2e-42               MSRTKLHDVPAKENTITEPKQVVVNPLFAKPNALASIFGISYSSVNRILKEWEKDSKGVDDLYYSLSSTMIVISIPRFEEYMKARHKKWM
851886..852032                     pathogenicity island protein; SA40_0762                                              N/A                 MKMYLAYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE
852025..852234                     PHAGE_Staphy_PT1028_NC_007045: ORF021; SA40_0763; phage(gi66395185)                  1e-32               MNNEQKEVIEHLVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
852237..852557                     PHAGE_Staphy_PT1028_NC_007045: ORF016; SA40_0764; phage(gi66395180)                  5e-25               MNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLHVYLKEFSELIQKFHEIEKASSENFDEESDDAKNSIKVAE
852621..853490                     PHAGE_Staphy_PT1028_NC_007045: ORF003; SA40_0765; phage(gi66395167)                  4e-135              MNEIKLKYDTQVSVVHYESLDSRSFKSFSMPKWSKLVNKLSVPIEANYKYARGVAVYGDIKDNTNDHGEIIKKHRNDKNVIYRNVIVLDYDEINDVKQLHDAISSVLSSVAWYWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMDVDMLEQWSKEYKQSNGSPNIKGYTRRDSAYWRDIAFGVSEGERNSTLASITGYLLRRYVDPNLVYGLVSAWASVCKPPINQSEVNNTFKSILKKDSKNS
853507..854976                     PHAGE_Staphy_phi2958PVL_NC_011344: virulence-associated protein E; SA40_0766; phage(gi209363581)     6e-81               MEDVTNEEVFEMIDSRTGVLNANDWKSQLRRSATTQALKKTTTNAEIILCNDESLKGLVQYDAFEKVTKLKRLPYWRSKGDTNYYWADIDTTHVISHIDKLYNVQFSRDLIDTVIEKEAYQNRFHPIKSMIESKSWDGIKRIETLFIDYLGAEDNHYNREVTKKWMMGAVARIYQPGIKYDSMIILYGGQGVGKSTAMSKLGGHWYNQSIKTFKGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQCVFVGTTNNYEFLKDQTGNRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAKVYFDEDPTDKALLLDKEASEMALKVQEAHSEKDALVGEIEEFLERPIPSDYWYRTLEEKRVSAHDVIDQDYIKLYGDGKLIELPNTKPGAYVWRDKVCSMEIWKVMMKRDDQPQQHHLRKIDKALRNTSYCGQSKSRHRFGEGIGRQYGFGINLISYYQGLKSKEQK
855262..855624                     PHAGE_Staphy_PT1028_NC_007045: ORF013; SA40_0767; phage(gi66395177)                  2e-12               MNKNQLKSEILEYIKAHAGTSFVEIERVFEENNFDYKGDGAYTSGQHPNVVFWIGWNQEAFDVIAELKKDRRIEMDICEPIVYMVDGKGLDLPIVRSKNIKTDHWLPVTFTISKKETECV
855626..855910                     PHAGE_Staphy_StB27_NC_019914: hypothetical protein; SA40_0768; phage(gi431809698)     4e-09               MNDKEKIYNQLHHDAPIQIMPAPENLFVEYIEDGEVWYSPVVCIALSKAHNINFYDSDDVGCIDKAATCSIKKFNPETGEFEQFSKMAQKEITQ
855907..856548                     PHAGE_Staphy_PT1028_NC_007045: ORF008; SA40_0769; phage(gi66395172)                  1e-110              MNIETIVNEFETRAGTLLRYYTGLLERSKVQPCCFKLYNDPFDMVYVMMNSKLFSHVYIKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDMMASQLFEDEYFMYGLQTYAESNNSDVFKCLENGFDTDTLEGIQSSNTDVIANIEMLYQLATGINEPVPELVEGLKLVTEFVQDENATQEDYKALERKLNDLKTSYYSLSK
857065..857406                     PHAGE_Staphy_PT1028_NC_007045: ORF015; SA40_0770; phage(gi66395179)                  1e-60               MQSIAEKETYHLPTEHLQVFNVIKNTSNKYITKTKILNQLGYEYNSSNERWLRRVINSLVYDYGYPIGCSYKPSERGYYIITTEQEKQQAMRSIKKLADGSMKRYEALKRIKV
857418..857996                     PHAGE_Campyl_CP30A_NC_018861: recombination endonuclease; SA40_0771; phage(gi410493113)     1e-04               MKTESYFKEYNQFVIDQQKAIQELKQERNALESKIKIDKSTYKQLIMDGQDDKADNLYQATDADEKKLKALNKRLETKKSVSKEVKYQKTIELLKHQSELSSLYESEKQSALGKLKKVVDAYNEIIDEIEDINDRYEDEHQQYASIYSQEQLYDDKEAREALNGYFRENIFTSYINGNDLPYEHNNKLFLKR
858014..858232                     hypothetical protein; SA40_0772                                                      N/A                 METKYELNNTKKVANAFGLNEEDTNLLINAVDLDIKNNMQEISSELQQSEQSKQKQLGTTLQNLAKQNRIIK
858283..858810                     PHAGE_Staphy_PT1028_NC_007045: ORF010; SA40_0773; phage(gi66395174)                  7e-92               MKLLKTKNCLYYRNGDNKLSEYQLLTQFNPAFINKKIKMCEFQIESMYHMSASTTTCDEIMGVVSVSYPIEKLVIKIIETKAGLQNYKNRSINNMALLKKVLNHYTEKEQKQVVKYMRSNGRYKPYNVIERLQVDLYQASIKQRSERQKQRNTAIENSKIARVNAYHQSSYVKVV
858813..859154                     PHAGE_Staphy_PT1028_NC_007045: ORF014; SA40_0774; phage(gi66395178)                  2e-59               MDKKQIKDFVCDYHKRTRSDVLIDDEINTDEFFSIGDENSNEWMADDNIDDHIVKNHLEMIVDRVANDKEFYIFDSLIQGRSFKDISNVLECSEQSVRLWYETLLDKIVEVIE
859151..859720                     PHAGE_Staphy_PT1028_NC_007045: ORF009; SA40_0775; phage(gi66395173)                  7e-104              MSELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKIIDENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPKSGKVQLVYNEHVELIEVPIKPSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGDDEELDKAVKDVSNANPNHTVIVDDIPLED
860028..860828                     PHAGE_Strept_pyogenes_315_2_NC_004585: streptococcal superantigen SSA; SA40_0776; phage(gi28876204)     1e-83               MYKRLFISHVILIFALILVISTPNVLAESQPDPKPDELHKSSKFTGLMENMKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSITVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFNNSPYETGYIKFIENENSFWYDMMPAPGDKFDQSKYLMMYNDNKMVDSKDVKIEVYLTTKKK
complement(860906..861463)         PHAGE_Staphy_71_NC_007059: ORF024; SA40_0777; phage(gi66396064)                      1e-70               MNKKLLTRTLIASALVLTTVGSGFHSSSNYNGINNVAKASEITDRDLWKNVRDALKEANIIDKTANETVGVTYNLNNGGESSITGTADLDELSNFNNKPINTDSVKRIDLSRINPNGNRFDANDAWKKLTDKLKEKQIVKNGDTVTIHSKDKNDPPISAKVGENYNGNKGLMLNQRDITKITITK
862172..862357                     PHAGE_Staphy_StauST398_5_NC_023500: hypothetical protein; SA40_0778; phage(gi588498372)     4e-28               MSDYKLKIIELIKSDITGYQIHKQTGVAQYVISQLRQGKREVDNLTLNTTEKLYSYARQVL
863481..863675                     PHAGE_Lactob_LF1_NC_019486: hypothetical protein; SA40_0779; phage(gi418489439)      4e-05               MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
complement(863909..864760)         putative membrane protein; SA40_0780                                                 N/A                 MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
865089..865850                     PHAGE_Bacill_G_NC_023719: gp245; SA40_0781; phage(gi593777701)                       1e-06               MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
867260..867271                     attR                                                                                 N/A                 TTGAAAATAAAA

#### region 2 ####
1296659..1297999                   PHAGE_Megavi_lba_NC_020232: putative glutamine synthetase; SA40_1181; phage(gi448825676)     2e-12               MPKRTFTKDDIRKFAEEENVRYLRLQFTDILGTIKNVEVPVSQLEKVLDNEMMFDGSSIEGFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVYKTDGTPFEGDPRANLKRVLKEMEDLGFTDFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFFDPNTEMGLTETAYQFTAGVLKNARGFTAVCNPLVNSYKRLVPGYEAPCYIAWSGKNRSPLIRVPSSRGLSTRIEVRSVDPAANPYMALAAILEAGLDGIKNKLKVPEPVNQNIYEMNREEREAVGIQDLPSTLYTALKAMRENEVIKKALGNHIYNQFINSKSIEWDYYRTQVSEWERDQYMKQY
1298492..1298689                   PHAGE_Staphy_StauST398_3_NC_021332: hypothetical protein; SA40_1182; phage(gi509141007)     6e-07               MNCYDEIYNTIKKLIENKEITSYQINKDTGISYGNINAMRRGERRIENLSLKNAKILYEYAKKVL
1299391..1299603                   PHAGE_Staphy_StauST398_5_NC_023500: hypothetical protein; SA40_1183; phage(gi588498372)     2e-07               MNQFKEIYNTIEKLLNDKSISNYRINQDTGVSYGGISESRSGKRKVNNLTLETAEKLYNYQKQLEIMIED
1299899..1300105                   PHAGE_Staphy_phiMR11_NC_010147: hypothetical protein; SA40_1184; phage(gi162290174)     2e-15               MNEIETIISEIEKLLTNNTPYSISKNSGVPRQTVTDLKVGNTKIKDAKFKTIIKLYEYQKSSENNSEC
1301340..1301525                   PHAGE_Staphy_StauST398_5_NC_023500: hypothetical protein; SA40_1185; phage(gi588498372)     9e-22               MSEYKKKIIELIESNLTGYEISKKTGVSQYVLSQLRQGKREVDNLTLNTTEKLYEYANKVL
1302096..1302251                   hypothetical protein; SA40_1186                                                      N/A                 MATFKRRKNNKKQDLILLRHEALEHYLMNKYNYNYDYAHKIVSKNTIIQFL
1302268..1302519                   hypothetical protein; SA40_1187                                                      N/A                 MLTLIKLKEDEQVIIYEYIPEDDISNGKGSVTFNKKDAEVIDFSLSEIENEEYFMLYRNKSFSVVRDFIEKQEFPENYKIAWY
1302724..1302996                   PHAGE_Staphy_StB27_NC_019914: minor head protein; SA40_1188; phage(gi431809708)      2e-10               MIPGVNAPPMHPWCRSTAVPYVGKWRDKFFKEREGKYQVEVKEAKLQEKAKNQMKEMIESGKIKIEINPEKQNRHSLGHRLYEEYKKRIC
1302990..1303247                   PHAGE_Thermu_OH2_NC_021784: SPP1 family phage head morphogenesis protein; SA40_1189; phage(gi526118333)     1e-11               MLKGKQTPSYTLLKNDELNKMLNQKFGTGRLIIENERKWKNKEIINFGQIIGKYYIDGKFIETKWGTVHYSKTGSHIIPNGKEGK
1303247..1303441                   PHAGE_Thermu_OH2_NC_021784: hypothetical protein; SA40_1190; phage(gi526118332)      8e-05               MKLWTYIGKKVMIELTNGQKFIGEVTNYDDEIDNESGEDSIHLDDGIDLYDFDESQIKYIEVLK
1303597..1303875                   PHAGE_Staphy_StB27_NC_019914: scaffold protein; SA40_1191; phage(gi431809709)        2e-11               MERNESNITDVTQNEEQLDNSDEQSQQNEKTFSQEEVSQLIKERIARERKKSDERIKDAKENNDSNEVAYLLKGGKVTKVYGDQGSVSYMLR
1304203..1304325                   hypothetical protein; SA40_1192                                                      N/A                 MSIQHLDGYISIEDFFKHMEELSKKEELEKEINQSKSKYQ
1304528..1305043                   PHAGE_Staphy_StB27_NC_019914: minor head protein; SA40_1193; phage(gi431809708)      1e-11               MIPGVNAPPMHPWCRSTTVPYVGNWRDKFFKEREGKYQVEEKEAKLQEKAKNQMKEMIESGKIKIEINCEKQNRHMLGHHLYNENKKRAILNNKKLPSYTILSIDLLNELLREKMSTGNLILSDELFDMKEIINFNQIIGKVHIDNVYIETRKGKVHYSKTGAHIVPYIDK
1305054..1305248                   hypothetical protein; SA40_1194                                                      N/A                 MRIEDAYRKDVIITLLNNEEYEGFVTDYENEFESETGNLVVDIQTDFAVYSFDETEIKSIRLLK
1305462..1305995                   PHAGE_Staphy_StB27_NC_019914: minor head protein; SA40_1195; phage(gi431809708)      8e-11               MIPGVNAPPMHPWCRSTTVSHVGNWRDKFFKEREGKYQVEGSFIESGALNNKSDEYGIKRNRHAQIYYNSVRNRDKQIEISKIAKNTNINKNTIQRVYEHIFENKYLLESGFKQFDPDFYMAQSWQRLREGKNIKKMDIIMLKHEALEHYLMNKYNLNYIEAHKLTEIKYNYSILIN
1306008..1306163                   hypothetical protein; SA40_1196                                                      N/A                 MLILKIKEINDKSVTYKYFPNNDENIKPGIIQMDIDSLEVINAEKSSLEKI
1306405..1306647                   PHAGE_Staphy_StB27_NC_019914: scaffold protein; SA40_1197; phage(gi431809709)        5e-11               MEKNESNITGVTQNKEQLDNSDEQSQQNEKTFSQEEVSQLIKERIARERKKSDERIKDAKENNDSNEVAYLLKGGKVTKV
