gi|00000000|ref|CP003739.1|  Pseudomonas putida HB3267 plasmid pPC9, complete sequence. 80360, gc%: 60.03%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2664..2688                         attL                                                                                 N/A                 GTGCAGTCGTCTTCTGAAAATGACA
4616..5629                         PHAGE_Mycoba_Butters_NC_021061: integrase; B479_26834; phage(gi479336499)            2.05e-12            MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
complement(5588..5767)             putative transcriptional regulator; B479_26839                                       N/A                 MDPSGNDGLLPAISGRREDFPQPAVRCGTDGLRAGVVNPPGLTCAALPLTSEGRQRIKR
5790..5831                         attL                                                                                 N/A                 TCGGCTTCTGACGTTCAGTGCAGCCGTCTTCTGAAAACGACA
5930..6856                         PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; B479_26844; phage(gi169936026)         5.47e-56            MKIGYARVSTRDQNADLQVDALKQAGCERIYQDIASGAKSARPELDKLLAHVRAGDTVVIWKLDRLGRSLKHLVELVGELAERKVGLQSLNDPIDTTHAQGRLVFNLFASLAEFERELIRERTQAGLSAARARGRIGGRPKGLPAKAEATSMAAETLYREGRLSVSAIGEKLHISKSTLYSYLRHRGVEIGAHQKSAQPRGQQRNVASPAEPAAEQVATVTLRLAVVNNSKFVRGRKRAKENIERYCLEPYSMKRLESGNYELAIPYRSDDELDKTVHDLLTEISQEADMRNCFIEADAWEEGSERRW
complement(7184..7861)             tetracycline repressor protein; B479_26849                                           N/A                 MFISDKVSSMTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAMLAENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGTRPGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSDAGERGGTVEQAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD
7865..9139                         tetracycline efflux protein; B479_26854                                              N/A                 MSTNLSVIKNPRVQSDQRRLVRRPDVKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALVQFACAPVLGALSDRFGRRPILLVSLAGATVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQTMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR
complement(9171..10055)            hypothetical protein; B479_26859                                                     N/A                 MSLRTPDLLFTAIAPAIWGSTYIVTTQYLPNFSPMTVAMLRALPAGLLLVMIVRQIPTGIWWMRIFILGALNISLFWSLLFISVYRLPGGVAATVGAVQPLMVVFISAALLGSPIRLMAVLGAICGTAGVALLVLTPNAALDPVGVAAGLAGAVSMAFGTVLTRKWQPPVPLLTFTAWQLAAGGLLLVPVALVFDPPIPMPTGTNVLGLAWLGLIGAGLTYFLWFRGISRLEPTVVSLLGFLSPGTAVLLGWLFLDQTLSALQIIGVLLVIGSIWLGQRSNRTPRARIACRKSP
10609..11460                       replication protein C; B479_26864                                                    N/A                 MVKPKNKHSLSHVRHDPAHCLAPGLFRALKRGERKRSKLDVTYDYGDGKRIEFSGPEPLGADDLRILQGLVAMAGPNGLVLGPEPKTEGGRQLRLFLEPKWEAVTADAMVVKGSYRALAKEIGAEVDSGGALKHIQDCIERLWKVSIIAQNGRKRQGFRLLSEYASDEADGRLYVALNPLIAQAVMGGGQHVRISMDEVRALDSETARLLHQRLCGWIDPGKTGKASIDTLCGYVWPSEASGSTMRKRRQRVREALPELVALGWTVTEFAAGKYDITRPKAAG
11768..12583                       dihydropteroate synthase; B479_26869                                                 N/A                 MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADVIDLGPASSNPDAAPVSSDTEIERIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR
complement(12954..13790)           streptomycin 3''-kinase; B479_26874                                                  N/A                 MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY
complement(13790..14593)           StrA; B479_26879                                                                     N/A                 MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
complement(14659..15027)           PHAGE_Burkho_KS14_NC_015273: gp6; B479_26884; phage(gi327198275)                     5.29e-21            MNKTKGCLIANFATVPAQIDTTTASGRMVFGIFATLAEFERDLIRERTMAGLASARARGRKGGRKFALTKAQVRLAQAAMAQRDTSVSDLCKELGIERVTLYRYVGPKGELRDHGKHVLGLT
complement(15033..15737)           PROPHAGE_Brucel_1330: transposase, putative; B479_26889; phage(gi23502708)           1.98e-53            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
complement(15894..16244)           aminoglycoside 3'-phosphotransferase; B479_26894                                     N/A                 MNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEFF
16860..17042                       PROPHAGE_Brucel_1330: transposase, putative; B479_26899; phage(gi23502708)           1.85e-17            MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMGL
complement(17430..17756)           hypothetical protein; B479_26904                                                     N/A                 MSRSRRKTPIVGHTTCRSEREDKKLWHQRWRTHERTALASASPEALCAHLPLLENQVSNVWSMGKDGRSYWPIKRQAATADRIANHKGRNPQERASLKKRLLRKWMSK
complement(17780..18115)           hypothetical protein; B479_26909                                                     N/A                 MAARITDDEWDELTPENFDTTALLRAVDAVDVLRGDLNDSADGAPPQLRTDLLKLHQLAMAAFNEGSRSRVAELFDLAVDLQDQVDHLMTSLEQVQETLSRLTALYPESLS
complement(18130..18465)           PHAGE_Escher_172_1_NC_028903: helix-turn-helix motif protein; B479_26914; phage(gi971754318)     7.80e-09            MQKRIIEGVEVQRSSGNVFADLGLPDAEKLKIKTGLVVEIRRAMRALGLTQQAAAKRMGIPQPKVSGMMRGDFTNLSERKLMDCLNRLGYDIEIKVRPAAEPIGHLTLATA
complement(18446..18823)           hypothetical protein; B479_26919                                                     N/A                 MTNKEKPLEWIASSHKDLMALPSDVRRRFGYALSLAQIGDQDDAAKVLKGFGGAGVLEVVEDDAGGTYRAVYTVKFAEAVFVLHCFQKKSKSGIATPKADMDIIRARLKVAEVLAQELRNAKTNH
19015..19617                       PHAGE_Escher_pro483_NC_028943: DNA invertase; B479_26924; phage(gi971758535)         7.21e-48            MLVGYMRVSSDSDRQSTDLQRDALLAAGVDPRHLFEDRASGAKDDRAGLARALEFVRAGDVLVVWKLDRLGRSLSHLLAIVTSLKDKRVAFRSLTENLDTTTPSGEFLFQVFGALAQYERALIQERVVAGLAAARKRGRIGGRPQAITGEKLDAIVAALDGGMSKAAVCRNFNVKRTTLIETLTRAGWRGAGRTVDEQQE
19601..22630                       PROPHAGE_Xantho_306: Tn5044 transposase; B479_26929; phage(gi21243163)               0.0                 MSNKNKLLTVFSDAEQEALYGLPDFDDAQRLEYLALTESELAFASSRPSLQAQVYCVLQIGYFKAKHAFFRFDWHEVEDDCAFVLSRYFHGEAFERKAITKHEHYSQRGQIAELFGYRSWAASFLPQLAQQAEQIVRRDVMPGFVAAELIVWLSEHKIIRPGHTTLQELVSEALSTERRRLGGLLAEVLDESAKAALGQLLVRDDTLSQLAALKQDAKDFGWRQMAGEREKRATLKSLHGIAKALLPKLGISQQNLLYYASLANFYTVHDLRHLKAEQTRLYLLCYAWVRYRQLTDNLVDAMAFHMKKLEDESRTGAKQSFVAEQLRRHQETPQVGRLLSLYVDDSVADPTPFGEVRQRAYKIMSRELLQNTAQRMSVKPLNKLALHWQAVDGLAERIRRHLRPLYVALDFAGTAPDNPWLAALTWAKSVFAKQQRLSQRPLDECPAATLPKRLRPYLLMFDAEGTPTGLHADRYEFWLYRQVRKRFQAGELYIDDSLQHRHLSDELVSMDEKAAVLAQMDIPFLRQPVSAQLDALAAELRAQWVAFNRELKQGKLTHLEYDKDTQRLTWRKPKGENQKAREQALYEQLPYCDVADVFRFVNGQCQFLSALTPLQPRYAKKVADADSLMAVIIAQAMNHGNQVMARTSDIPYHVLESTYQQYLRQATLHVANDCISNAIAALPIFPHYSFDLDSLYGAVDGQKFGVERPTVKARYSRKYFGRGKGVVAYTLLCNHVPLNGYLIGAHEYEAHHVFDIWYRNTSDIVPSAITGDMHSINKANFAILHWFGLRFEPRFTDLDDQLQELYCADDLALYEKCLIRPAGQIDRQLIVGEKANIDRIVATLGLKEMTQGTLIRKLCTYTAPNPTRRAIFEFDKLIRSIYTLRYLRDPQLERNVHRSQNRIESYHQLRSTIAQVGGKKELTGRTDIEIEISNQCARLIGNAIIFYNSAILSLLLTKYEAAGNAKALALITQMSPAAWRHILLNGHYTFQTDGKFIDLDALVAGLELG
23474..23842                       hypothetical protein; B479_26934                                                     N/A                 MSAYILNRFHISAILMFTCTGKPDATTYQILADQGQQLLDENIRSVRTRYPGETFKGELFGLDETVRKPTPLEALKLIQCLEYQSNQNPDYYATQAFRTLHEIRRIAQSKLPGWDQTSWDFV
23875..24192                       PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; B479_26939; phage(gi461475014)     6.45e-14            MWRYSLRWCLPHQPCPGDFELLVIEAPAGTRMPEEMHQAWQRRPVGYGVCLDFPQSRAVKRWSAEAKDRVRKQKMAKRIEKAAPLFADELIARELEQRPDYFKGE
24196..25284                       PHAGE_Azospi_Cd_NC_010355: hypothetical protein; B479_26944; phage(gi168495116)      3.30e-18            MLSTQIRPAQPGLFTAQALGVDDFELSQITAEFSAISSGELEHHLFDAPRPSEIVRLADKVARHTRSHGWLDQAAAQARIAEWKRHAFAQGEGRANADKVVLSLFDHTGQWSQPWEDAGYQVLRFDIQDNPVTGDVNEFGAGFFGDWFGDFDGLDIYAILAACPCTEFATSGARHFAAKDADGRTVAAVQLVHQTLRTIEYFRPAVWAIENPVGRIEKLGGLPPWRLAFDPHHLGDPYTKKTLLWGRFNANLPIAPVEASDGSKMHRKFGGNRLATKNARSATPEGFSYGFFMANNAQDNPALAIAYKYDRLDAGLLRAALDANVSAREIDELVADAYYMDMDDSAAESALRQAISTQNPPT
35543..35584                       attR                                                                                 N/A                 TCGGCTTCTGACGTTCAGTGCAGCCGTCTTCTGAAAACGACA
37742..37766                       attR                                                                                 N/A                 GTGCAGTCGTCTTCTGAAAATGACA
