gi|00000000|ref|CP003880.1|  Pseudomonas sp. UW4, complete genome. 6183388, gc%: 60.05%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1324271..1325128                   PHAGE_Clostr_phiCP7R_NC_017980: putative lysozyme-peptidase; PputUW4_01118; phage(gi389060393)     1.95e-14            MSLTVIAQRMSKTSFQRLVTGLVLSTLLVGCSSNKSSDVRVVDRNNAAAQRPAVTTGQYVVRPKDTLFSIAFRYGWDYKALAARNNIPAPYTIRPGQTIRFDGRTGSTSTAVVSSSSSTPSSSSKTTVIRRSANGTTTSTTTVVPSVANKPAPAPLPPPGPAPTGWGWPSNGILIGKFSSNGSLNKGIDIAGDLGQPVLAASDGTVVYAGSGLRGYGELVIIKHSETYVSAYGHNRRLLVREGQQVKVGQTIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR
1325234..1326241                   PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; PputUW4_01119; phage(gi331028036)     4.00e-42            MALSKEVPEFDIDDEVLLMESSIDTDSMSNDEGAAPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSPEEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ
complement(1326713..1327036)       ferredoxin; PputUW4_01120                                                            N/A                 MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPAGMENFIELNAELADIWPNITERKDPMPDSAEWDGKPGKIADLER
complement(1327179..1329758)       PHAGE_Bacter_B124_14_NC_016770: putative mismatch repair protein; PputUW4_01121; phage(gi374671664)     9.44e-12            MNKAVSDLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQAIPMCGIPYHAAEGYLAKLVKLGESVVICEQVGDPATSKGPVERQVVRIITPGTVSDEALLDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERVNPVELLIPDDWPKDLPAEKRRGVRRRAPWDFERDSALKSLCQQFSTQDLKGFGCENLTLAIGAAGCLLAYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMGSRLLTRWLNRPLRDLTVLLARQSSITCLLDGYRFERLQPQLKEIGDIERILARIGLRNARPRDLARLRDALGALPELQVAMTELEAPHLQQLASITSTYPELAALLEKAIIDNPPAVIRDGGVLKTGYDSELDELQSLSENAGQFLIDLEAREKARTGLSHLKVGYNRIHGYFIELPSKQAESAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEALLEDLIAQLPPLQDTAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRISQGRHPVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERLAHLRAYTLFATHYFELTVLPEAQPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPSEVITRAREHLSRLEDTALPHESPAPAKGKPAVPQQSDLFASLPHPVLEELAKLDLDDMTPRRALEMLYTLKTRI
1329969..1330703                   PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative Cro/CI transcriptional regulator; PputUW4_01122; phage(gi589286922)     1.10e-56            MHKRNVSTVLRALLDQHGISPTELHRRTGVPQSTLSRILSGKIVDPSDRHISRIADYFSVSTDQLRGRADVAPATIAGRAPVHSELKDISLWDDDTPVDDDEVSVPFLREVELAAGSGRFVIEESERSSLRFGKRSLRHNGVQFDQAKCVTVRGNSMLPVLRDGATVGVNAGKCGIGDIVDGDLYAINHNGQLRVKQLYRLPTGIRLRSFNRDEHPDEDYTFQDIQEEPIVILGHVFWWGMYAR
1330878..1331219                   pyocin R2_PP, holin; PputUW4_01123                                                   N/A                 MTTEQYALLDMPLWLVISLPILGGVTGEMWRADKEGVRGWPLIRRLSLRSGSSMICGASVIMLLHAANISIWAACAGGCLAAMAGTDVVLGLYERWAAKRMGISQVPSGDVED
1331336..1331836                   CinA domain-containing protein; PputUW4_01124                                        N/A                 MKVITQLAADLGRQLQVLNAHVSTAESCTGGGIAEAITRIPGSSAWFEAGYVTYSNLQKNLQLDVPVELFTTVGAVSREVVEAMARGAQEKSRAYFSVAVSGVAGPDGGSPSKPVGTVWLAWGVGERVFSELQHFAGDRDEVRRQTVKAALEGLLRYAAAEISNQG
1331920..1332978                   PROPHAGE_Escher_MG1655: DNA strand exchange and recombination protein with protease and nuclease activity; PputUW4_01125; phage(gi16130606)     0.0                 MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEKQLRDKLLSPASVADAKASAVKETEDDLVDADI

#### region 2 ####
complement(4492871..4493536)       PHAGE_Strept_9871_NC_031069: hypothetical protein; PputUW4_03898; phage(gi100019)     3.14e-08            MKFYLLGAANPEAVRMILTLQRSQPDVQFAFLDNDPAKQGTLFYGVPVVGGTDKVAELKGPDTRFVNLITGSTALRHRTTCEIVEAGGTLGNFIHPGIDLTMTTMGVGTYLQEGVIMQAQVSLGDNTSISAGSVVGHEGQIGHSVFMAPGVCIAGCVEIGDGTFIGTNATILPRLRIGRWVTIGAGAVVTRDVPDFAVVVGSPARTIKTNSVSIQDGRVFK
complement(4493533..4494654)       PHAGE_Synech_ACG_2014f_NC_026927: hypothetical protein; PputUW4_03899; phage(gi100225)     4.40e-19            MSRIHYTKPSVGELEADYVLDAVRHGWGERCYEYLTRFEKSFAEHVGATYAIATSSCTGALHMGMAALGIGAGDEVILADTNWIASAAPVTYLGATPVFVDVLANSWCLDPQQVRRAITPRTKAILAVHLYGNLCDMDALLAIGREFGLPVIEDAAEAIGSQWRGQAAGSLGAFGAFSFHGTKTMTTGEGGIFVTSDKALYERVLTLSNHGRVAGSSKQFWPDFLGFKYKMSNLQAAVGCAQVERIDELIERKRAIFANYADALAALPGLSMNPEPEHVRNGYWMPTVVFDRELGITRDMLIAAFQAADIDARVFFWPLSSLPMFSELTADSPVAHSLPERAINLPSYHDMTDDDQHRVIEVLRALVLKRTRL
complement(4494651..4495877)       C-methyltransferase; PputUW4_03900                                                   N/A                 MNCRGCATALTLPLIDLGTSPPSNAYVRADQLEQAEQWVPLKVAVCQQCWLVQTEDYTSADSLFDAEYAYFSSFSSTWLAHAERYVAEMVERFGLTADSRVVEVAANDGYLLQYVARRGIPCLGVEPTRSTAQAAREKGLQIRELFFGRDSAVQLKNEGWGADLMAANNVLAHVPDINDFLCGFATLLKPTGVATFEFPQLLTLMAGQQFDTLYHEHYSYLSLTAVQTLCERNGLQVFDVSQLSTHGGSLRVFVQRLDGERREVQPAVRQQLQAELAAGVKTPEYYTTLAPAAERIKHGLLRFLLQAKADGKRVVGYGAAAKGNTLLNYAGVKPDLLAWVADANPHKQGKYLPGSRIPIVSPAQIDIEKPDYVLVLPWNLLDEITQAFAGIRAWDGRFVIAIPELIIR
complement(4495874..4496434)       PHAGE_Entero_phi92_NC_023693: Phi92_gp065; PputUW4_03901; phage(gi726646998)         4.30e-26            MSEFLLKALPLKGLFCVQHKRFEDERGHFSRLFCEGSLSAFGQAFHIRQINHSCTRERGSVRGLHYQNERAPEAKLITCLRGEVWDVAVDLRPDSETFLHWHAEHLRAGDGRSLLIPAGFAHGFQTLSADAELLYLHSNDYTPEHEGGLSVLEPRLAIAWPLPVNNLSVRDASHPLLDEHFAGVRL
complement(4496431..4497513)       PHAGE_Entero_phi92_NC_023693: Phi92_gp067; PputUW4_03902; phage(gi726647000)         3.08e-19            METMGLSPQFWRGKRVLVTGHTGFKGSWLTLWLQSLGAEVSGFSLDPSTEPSLFELARVHEGINDQRGDLRDLGALLELIAEVQPQIVLHLAAQPLVREGYRDPLGTYSSNVMGTLNLLEAIRQVGGVRACVLVTTDKVYANQEWLWPYRENEALGGHDPYSSSKACCELLAQSYAASFFAPQKHAEHGLALATARAGNVLGGGDFAPERLIPDVLRAWSADEPVTLRYPQAVRPWQHALEPLAGYLQLAAGLYEQGPKFAGAWNFGPGEADMCSVGEVVELLASRWPQARGLRIEPSDMHEAGLLRLDSSRARQLLGWQPRWSLQQCLTQTLDWHLAWQNGDDMRAISLAQLNLYRGAL
complement(4497495..4498268)       PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; PputUW4_03903; phage(gi100148)     1.21e-06            MKAVILAGGLGTRISEESHLKPKPMIEVGGKPILWHIMKQYSAHGIHDFVICLGYKGYAIKDFFANYFLHTSDVTFDMRNNRMDVHQNYSEPWRVTLIDTGEETMTGGRLRRARRYLEDEQAFCFTYGDGVSDLNIGALVDFHLKHGKLATVTAVQPPGRYGALNRDGDKVLGFTEKPRGDGGWINGGFFVLSPKVLPLIDGDDTSWESGPLDGLAARGELMAFQHDGFWQPMDTLRDKNHLEALWQSGEAPWKQWD
complement(4498734..4502327)       PHAGE_Entero_phi92_NC_023693: Phi92_gp163; PputUW4_03904; phage(gi726647097)         1.73e-11            MNSLPLVSLVIPAFNPRFFGRALHTAVSQSYGNLEIIVCDDSRGHEIEEIVASAVGQGATVRYVRNARTLGLVGNLQACLEQAQGEYIKFLCDDDQLFSACIEVQAQALIDCADVNLVVAQRLLWDADDMPLPSRLENTPLSPVGGVFKGEDLLAIFENFPVNILGGFSNAMFRRADVLELFPALTQPGHCFVATLDFALYVCLMRRGNLAVSNHVLGVERLYPERLSGQQSMKDAAETERQWLSQMLKARGGESAPAQGWVRYVPLTQVDETPRVWEELPLSRTLGTKQTTQDWHVGIASVSFAQLYAQWLACRTLTDGQRELLPDTLEAWPTRPKIVPIIIDEQGSRSALELTLQSLAEQDYAPELTLVLSASCTEARLDERVFRLPLQDDWQQQLNELLPQLEGADWFYLLRAGDRLVAPALLVMAERIALSRELTCLYSDEGGLHQGESAEPAFKPDFNLDLMRSYPYVGRALAFQREQFLALGGFDSTYGELAPHDVLWRMVESAGTQVIGHVCEVLLESAFDLAKWLSLPDVVDTNPRLLEAHLHRLGVAHDIRQGSSPLLNRVDYLHADRPLVSIVIVSKDQTLALQRCVESLLEKTAYGEYELLLVDNGSQSAEALEWFAGMAQLGSERIRVLRCELQGNAAAVRNFAVQQAAGEYVLMLNPYTVITQAQWLGELLNHAQRPEVGVVGAKLFNPDGRVLHAGLILGLQGPAGVPFHGETLHAAGYMYRLQVAHNFSAVGGDCLMVRKAVFDAVGGLDEQDLAQSLNEVDLCLRVGQEGYLVVWTPHAQVALGAQPAAVAQEGDQARAEQEQEVFYKRWLPIVARDPAYNTNLALQGLGGASFSLEPGLRSGWSPFSKAHLPKILALPVNASAIGHYRVTQPLIELEAAGRARGRIHYNLPTIIEVERHSPDVIILQGRYSEGPINEIPSLQKYSSARRIYELDDFVINVPHRNAHIRNMPGKDEMEKLVRRAIGMCDRVVVSTEPLGNALSDMHHDIRVVPNMLASHLWTDLRSQRRTSKKPRVGWGGGTSHHGDLAVIADVVRELANEVDWVFFGMCPDDLRPYMHEFHGVIGLDVYPAKLASLNLDLALAPLEFHIFNDCKSNLRLLEYGACGYPVICTDTEAYRGYLPCTRIKTNSTDEWLQAIRMHLADPDASYRMGDELREIVLRDYVLRGDNLRYWENGWLAD

#### region 3 ####
6022868..6023389                   PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; PputUW4_05296; phage(gi100030)     3.03e-12            MDDNYLIPHIFTRHKLHLHALLLQNQPWFCARDLGRLLRIHLNDRQVQKLDPDQYQTTQTLIYGRIENTLLISESGVYAMLVYHYCPEYRALREWLTHEVVPALRDAQHPTTTERPQLSLLNWPEMSLSLLHWNNQPWIRLQDVPQMLPDQETSRPAFSAPWWKRAAKILHAL
complement(6023440..6023745)       PHAGE_Aeromo_Aes012_NC_020879: putative XRE family plasmid maintenance system antidote protein; PputUW4_05297; phage(gi472438177)     7.06e-19            MTKNGMRPVHPGEILKEEYLEPLSLTAAALARALNVSTPTVNDIVLQRRGVSADMALRLSICLDTTPEFWLNLQSTYDLRKAEIERGAAIRDQVERLAHCA
complement(6023754..6024032)       PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: plasmid maintenance system killer HigB; PputUW4_05298; phage(gi971749637)     1.22e-05            MIVSFKCSETEYLFRNGKTRMWSAILSVVERKLTMLDAAAVLIDLRSPPGNRLEALEGNRKGQYSIRINAQWRICFIWGPNGPENVEIVDYH
6024304..6025797                   PROPHAGE_Escher_Sakai: putative ATP-dependent protease; PputUW4_05299; phage(gi15833954)     3.75e-177           MSLSIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGRFDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRWLMVPRANAEEACLASGLKVIAVDHLLEAVAHFNGHTPIEPYASDGLLCASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLTESEALEVAAIQSVTSCVPLRHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFERRVLEVLREPMESGHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKVKPDENSASAAVLVAQARERQQKRQGCANAFLDLPGLRRHCELSTADEHWLESACERLTLSLRSAHRLLKVARTLADLEQVDAISREHLAEALQYRPATQ
complement(6025880..6026800)       PHAGE_Burkho_phi1026b_NC_005284: gp58; PputUW4_05300; phage(gi38707948)              2.02e-17            MSRRLPPLYALRAFEAAARHTSFTRAAEELSITQSAVSRHIRTLEEHFACRLFHRSGRNLQLTESARLLLPGIREGFTALERACNTLRAEDDILRMKAPSTLTMRWLLARLSRFRHLQPGNEVQLTSAWMDVDSVDFNDEPFDCAVLLSNGHFPPDWEASYLFPEELIPVGAPNLRGDQPWDVERLSNTELLHPTPDRRDWRNWLERMGLAEQVSLKGGQVFDTLELGMIAAARGYGVSMGDLLMVAEDVAQGRLSLPWPTAVASGLCYYLVWPKTRPGGERMRRLSDFLQNEVRSMELPDVVHLS
6026959..6028356                   multidrug resistance-transport membrane protein; PputUW4_05301                       N/A                 MQHPARTELWAILRLAGPLIASQLAHMLMVLTDTLMMARLSPEALAGGGLGAATYSFVSIFCIGVIAAVGTLVAIRQGAGGILGATRLTQAGLWLAWLMALVAGLLLWNLKPVLLLFGQTESNVQMAGQFLIFLPFALPGYLSFMALRGFTSAIGRATPVMVISLGGTVANFLLNYALITGMFGLPKLGLMGIGLVTAIVANLMALALAWHIRRHPAYEAYPLRQGLSRLNRQYLKELWRLGLPIGGTYAVEVGLFAFAALCMGTMGSTQLGAHQIALQIVSVAFMVPAGISYAITMRIGQHYGAGQLLDARLAGRVGIAFGAAAMLCFAMVFWLLPNQLVGLFLDHNDPAFRDVINLAVSLLAVAAWFELFDGTQTIAMGCIRGLKDAKTTFLVGLGCYWLIGAPAAWWMAFHLDWGPTGVWWGLALGLACAAVSLTLGFEWKMKRMIKRETTSEQRFEVAQPD
complement(6028492..6030165)       PHAGE_Bacill_G_NC_023719: gp350; PputUW4_05302; phage(gi593777806)                   6.33e-18            MSTPVEPLRLLLLAEEPAWAALLRECLAPMGSSAVLISAPSWESVSSLFDDNRSAVLLTIPQLQPAPGRCSLPTVLLLDHEPLTPPDGVSDWLVRDHLDPGMLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLTARLAENDGRGLALGHLDLDNFRYANDALGHQAGDRLILQVVARLKSQLEAGDQLARLGSDEFALLIDTRRAPQRAEWMAERISEALAEPYWVDGESLLIGSSLGIAYARAQAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSIADLETELRRALRRDELELHYQPRLNLEDGQIVGLEALVRWRHAERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALLELGLPPLHMAINLSFRQFQDSQLLSTLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGMEQREENRKLVHAMINLAHNLNLEVVAEGVETPEQLDLLRGFECDQVQGYLISRPLPLAELVEYLMFGSSQQPAQEVVS
