gi|00000000|ref|CP003974.1|  Neisseria gonorrhoeae NG-k51.05 chromosome, complete genome. 2232590, gc%: 52.38%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
526353..526387                     attL                                                                                 N/A                 AACCGCCCTGATTCAGGGCGGTTCTTTTTTGTTCA
526674..527735                     PHAGE_Entero_P4_NC_001609: integrase; T556_02890; phage(gi9627511)                   7.27e-34            NeisseriagonorrhoeaeNGk5105MQDGRQQTISLGRYPDFSLAEAREWREEVRRKRAHGENVVNKKVRADFAFEKVARDWFVRWSKGRSEKYAGQVMRNFERWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKMVFAFAFAVGSGMMEINPVAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRVHIHPVTRFCIYWLLLTMTRIREAALMEWSELDGEVWRIPAERKKERRGHDVPLSRAMRWVLDQARGLNVNGRFVFESVNFQGHINKESPRVAMRRSGLDTTAHGLRSLARTYLREVLKVYNDVAEKLLAHSLGTRTQTAYNRSELWEERKDAPERWGNDVLRLADNGK
complement(528091..528360)         hypothetical protein; T556_02895                                                     N/A                 NeisseriagonorrhoeaeNGk5105MESSDVQGRMETLAFATAPKKGGIRKSGFGRVILIKSGHIVIHNADGDSFATGYGVIAADIVSPDLKTDFDIFFPPESLLRYKKIGKKK
complement(528555..529238)         PHAGE_Pseudo_JBD18_NC_027986: hypothetical protein; T556_02900; phage(gi100005)      1.38e-24            NeisseriagonorrhoeaeNGk5105MDKEKVLDKIKKCLALGRSANEHEAAQALRQAQALMEKYKVNAEDIALSKVSEQKADRKMAFKLAGWQWGVANMIADIFGCKSYQRGKTMMFYGIGNRAETSAYAFDVVYRQISADRRKFLKTCRAGKPSHRTYLADRFCGGWIASAWETVKKFEMSDEEKAIMDGYKKKEYPDMAEARTRDAKSSILQGSKMEYEALTRGMESGKQVKLHYAVNGTGFVKQIGGQT
complement(529249..529785)         PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; T556_02905; phage(gi970580043)     3.63e-13            NeisseriagonorrhoeaeNGk5105MQTVATKPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLVAAKVRRYCGEHPGVFDGAAGSRQLERYIKPSEFHAVEIQPEACKALLQNYPAAAGNLGRRKQKKPRVRKRISPSRMARPNRKQSERRMGKGAKLKYRTN
complement(529896..530111)         hypothetical protein; T556_02910                                                     N/A                 NeisseriagonorrhoeaeNGk5105MSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
complement(530163..530654)         PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; T556_02915; phage(gi374531698)     2.27e-19            NeisseriagonorrhoeaeNGk5105MTALTLYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEEHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGRQVAGAKIEGRKNLQIR
complement(530651..530875)         hypothetical protein; T556_02920                                                     N/A                 NeisseriagonorrhoeaeNGk5105MQLLRTATEKGNKKMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
complement(530973..531659)         PHAGE_Pseudo_RIO_1_NC_021300: putative ssDNA binding protein; T556_02925; phage(gi508178031)     1.94e-10            NeisseriagonorrhoeaeNGk5105MSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKHPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGRTEHPQGNAAPAEDIEDDIPFN
complement(531728..531889)         hypothetical protein; T556_02930                                                     N/A                 NeisseriagonorrhoeaeNGk5105MSFHPETAYNGSGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
complement(531886..532164)         hypothetical protein; T556_02935                                                     N/A                 NeisseriagonorrhoeaeNGk5105MKTRNIAFKFAVLAAVLAAGYAFGFAKGGGSRTAKGKPAGIAAMRMALAQKQAEVAELSAEIWLEERHLNADEEEAGCRRVHGDAEVPGGKE
complement(532317..532649)         hypothetical protein; T556_02940                                                     N/A                 NeisseriagonorrhoeaeNGk5105MKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESALIGIAKKSAREFVRDADGEPYSQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
complement(532790..533077)         hypothetical protein; T556_02945                                                     N/A                 NeisseriagonorrhoeaeNGk5105MSYLDQPLKHGYGNGNGSGNGSGYGNGYGNGYGNGYGGGSGSGSGSGYGNGKGDGDGSGNGDGDGNGNGSGNGSGNGDGDGNGNGSGNGSGYGNG
complement(533074..533550)         PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; T556_02950; phage(gi197085698)     1.05e-32            NeisseriagonorrhoeaeNGk5105MEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
complement(533583..533783)         hypothetical protein; T556_02955                                                     N/A                 NeisseriagonorrhoeaeNGk5105MNELISRINRFGARAKDGQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
complement(533981..534394)         hypothetical protein; T556_02960                                                     N/A                 NeisseriagonorrhoeaeNGk5105MIHLNVHYCDEIIRHAENDKYSLIGIFPDICHIPTPQAILGRLCLSVSFSAEGMDIQTMKTGQIFLEIVRNDDVISALEIPSYDGSDTEENVSFMLHQTISGLPVSDNDRIYVRMTTHNHILSESRPLSFSWLPYHS
complement(534391..534852)         PHAGE_Clostr_PhiS63_NC_017978: gp25; T556_02965; phage(gi388570654)                  2.91e-06            NeisseriagonorrhoeaeNGk5105MGATLTVAVAACTVSTPTSAIPVTHIKCLRINGQIKCVKPISPNTTPAAEHIEHVRKNPRRKAAMDRAAARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYMEQA
complement(534869..535306)         hypothetical protein; T556_02970                                                     N/A                 NeisseriagonorrhoeaeNGk5105MELTVHFNAEQDLDRLFEKDEEAVGYLENVIAMIQADSAIFDGLYKNRYFREYGEPIGPIDLEVKPILSLWGKDIKVLRVRFDSEEAAGYRIIYAPCHEKQPNGTYIRRIDILAVVNKKTDEFDYQAEHPITKRIIKDYEELYSN
complement(535421..536137)         PHAGE_Salmon_ST160_NC_014900: C2; T556_02975; phage(gi318065925)                     1.45e-21            NeisseriagonorrhoeaeNGk5105MPFIIDYQCLCAINSEIKMFSGEQLGQAISEAIKRKNVSQKEVADHFGVKQPSVSGWIKNGRIDKKHLDKLIDYFSDVVTPSHFGIETFRVLKSNEQSSIRFPRLNAEATCGAGTINDHYIEVVDYVTVAAAWAREKLGGNLNKIQVITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLKAKRLQSTVGGGLMIISDNSSYRTETVRGEDLNAVRIIGRIRGAWRLSQF
536212..536442                     PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; T556_02980; phage(gi100049)      3.86e-10            NeisseriagonorrhoeaeNGk5105MSIQKAVDYFGNESRLARAIGVKQPTVWAWNKKGTPPPIIRCVQIEKLTGGAVNRKDLRPDDWHLIWPELAGDQPK
536521..536676                     hypothetical protein; T556_02985                                                     N/A                 NeisseriagonorrhoeaeNGk5105MKKQDRNRLSKKDRRLIKKAMLKAAAKGCDEVYRIAPGLKDGFELLGKQPD
complement(536653..536841)         hypothetical protein; T556_02990                                                     N/A                 NeisseriagonorrhoeaeNGk5105MPSDLSFILAKELIRSGSIRLSGSTAKGQAGELAVFIRTLHQKPEESEPNTDNEYLIGLLSK
537014..537241                     PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; T556_02995; phage(gi970580066)     7.65e-05            NeisseriagonorrhoeaeNGk5105MNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTQLAARITDLEGRGFVFAKPKYKVGNCKNPVAHYSIAKSGIEP
537238..537375                     hypothetical protein; T556_03000                                                     N/A                 NeisseriagonorrhoeaeNGk5105MSREQRIRGARLPVSAYMQAEGAGKAREALDGRVEKVKGVDDEAV
537359..538423                     PHAGE_Haemop_Aaphi23_NC_004827: putative DNA replication protein O; T556_03005; phage(gi31544014)     1.74e-37            NeisseriagonorrhoeaeNGk5105MMKPSESLRAAGRPIAYYPKLAKPLGGVNAAILFGHFFYWNDKTQYESGIYRTAEEIEIETGLSVQEQRTARAKLRERGVLIETEKRIEHRIYYKLNLDAFDDLMLQHSGGGESTAPKCNINSPELQNQHSGGGESTAPKCNINSPELQNQHSGSEESTAVIRTEDLTEDLAVYTPLPPNAGNGKGGLNADAFVSADAETCGRETGEPTSPKAESDSNGNGGLSGKPKNANVPRRRKTHGVPLQEIADLYNEVLGGRLPSVQVLNDTRKRAIANRWCEMLGTAAPNGKVRFGDKETGLAWFAGFFRKVAMNPFWMGENQTGFAVGFDWIFKAGNFVKILEWHPPKTNQAARGRA
538420..539781                     PHAGE_Marino_P12026_NC_018269: replicative DNA helicase; T556_03010; phage(gi399528354)     1.49e-70            NeisseriagonorrhoeaeNGk5105MNRIEETEAVQSLASVGAEQNILGGILIEPTAIARCAILTPEKFYQAQHRIIFRALLDMAAANEPIDIITLNDKLEARGEAENAGGLAYLIDLNQNTPSAKNISRYVGIVNDRFVERGLLKASAAIEKIAVSKDGGTVAEKLSKAADELAAAGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGMTGGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNIPMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGLDLLVVDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIRGSGAIEQDANIIIMPHRESYYDGNENPSIAELIIAKNRDGETGTVVCGWKGQFMKFEEEPDLAWQAPKHDEYDPYSV
540052..540615                     PHAGE_Mycoba_Gengar_NC_031035: hypothetical protein; T556_03020; phage(gi100045)     3.68e-08            NeisseriagonorrhoeaeNGk5105MGISQPTRDLKNALKRKFERKYGMTVRNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRADAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAGGGI
541129..541458                     hypothetical protein; T556_03030                                                     N/A                 NeisseriagonorrhoeaeNGk5105MTASDIKHIKTKGKIKMAEEMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
541449..541886                     PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; T556_03035; phage(gi148609431)     1.77e-07            NeisseriagonorrhoeaeNGk5105MRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYKSVVRRIAQGAGAMPSEGFVAVRLRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVAGGGLAVEVGELEMEQTDAADEGWDFIGQEGWDV
541834..542184                     PHAGE_Vibrio_VvAW1_NC_020488: protein of unknown function (DUF1364); T556_03040; phage(gi460042926)     1.15e-20            NeisseriagonorrhoeaeNGk5105MRQTRVGISSDRRVGMSSAIRKAAKGGQCTPNIAGVCNDNPETVVLCRFPGETHGAGLKSGGLGAGFGCGCRRGAIDGRGAGLSREDKEFYMRRSQLRTIRRLEALGVVGVKGRLK
542181..542564                     PHAGE_Pseudo_vB_PaeP_Tr60_Ab31_NC_023575: Putative ninB protein; T556_03045; phage(gi589286931)     2.79e-25            NeisseriagonorrhoeaeNGk5105MNGAEFTLTPQNKKQVMRSIWDSPDGWFENGNLEITIRPRKSKRSIEQNRRLWFLYREISEKVFIDGRRFSQDVWHEFLKRKFIGCIEMPNGQLMGISTTKLSVREMSEYQEKIISWASMEHGVLWD
542555..543073                     PHAGE_Xantho_OP1_NC_007709: HNH endonuclease family protein; T556_03050; phage(gi84662624)     6.21e-34            NeisseriagonorrhoeaeNGk5105MGLTQEVLKELLRYDDNTGKLYWAERPRKYFNSGLHYKSWNTGFSGKEVFLYKGRLGYLKLKIFKKQYNAHRLIWLFVYGKHASSIDHINRDKTDNRISNLRDVTHAENMKNRGKFKNNTSGHTGVYFHKPSKKWQARIMVNRKNKILGLFEHIEDAVKAREAASKDFGFVV
543135..543560                     PHAGE_Pseudo_F116_NC_006552: hypothetical protein; T556_03055; phage(gi56692953)     3.79e-21            NeisseriagonorrhoeaeNGk5105MMSGLSDIDKVYQGVVDLHNAEQVVSREALAETTGLKMSEITKFTKLLVEHGKIYRVTRGIFKPAIGFGETRPVSVSVLDSGMGVLEIGDTVLHLNPQEMRSLGALMSGFGQQFSSIQMGREFSVLRNYLECSAKNGRLDL
543560..544099                     PHAGE_Escher_HK639_NC_016158: terminase small subunit; T556_03060; phage(gi356870601)     8.85e-08            NeisseriagonorrhoeaeNGk5105MPRLSDEDWRKVELDYRRGVLSIAEIGRKYNVSAQHVGRVAKERVWTRDLNDEVQAKARAMVLSADKNGNAPDYADFNLKQVTDAEAKRVAAVQRRHRNLAENLSKSAEQIVAELYGSPEDTFTKARMFQTVAAGFKVLVEIERKSYGMDTAESKISESAKTAGIRIEFVGPEDDGKDG
544080..545354                     PHAGE_Bdello_phi1422_NC_019525: putative TerL large-subunit terminase; T556_03065; phage(gi422936857)     9.89e-63            NeisseriagonorrhoeaeNGk5105MTGKTVDLKLPAKLDGLFKPCRYKVMYGGRGGGKSHGAASALLALGAQRPLRILCVREIQKSMRDTVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSHTVDSIKSFEGIDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDTHRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNATGIEEGIRAARMLFPKVYFDKDKTARLLECLKRYGRQIHAKTGVAMGPLHDEYSHGADMFRYLAQAVDLMDTGSNTGYTETPVSDWRLY
545354..547606                     PHAGE_Pseudo_F116_NC_006552: portal protein; T556_03070; phage(gi56692922)           0.0                 NeisseriagonorrhoeaeNGk5105MGTDVPETGVLPDKNGEPLTIGEYRLFVGEMMNQPAWRAVADKEMDYADGRQLDNELLQKQRELGLPPAVENLITPTLLSVQGYEATIRTDWRVTADGETGGRDVADALNFKLNRAERQSRADKACSDAFRGQIACGIGWVEVTRNPNPFEFPYECGVIHRNAIHWDMKSYKYDLSDARWLIRRRWLLPERLAQFFPEYAGHFKAMGRGGSDWRISGEMLDGGGNTGLADAWGISGRNTVSEEFWFNETTRELAVAEVWYRRWVTADCLRDKKTGRTVEFDGANPNHREMAANGAVLFAASVPRMRRAFVVGDLVVRDEPTPYPHQKFPYVPFFGFREDNTGIPYGYVRNMKYAQDNLNSTNSKLRWGLSAIRTVRTKGIVDMSDEQFRRNIARVDADIVLNKIEAAQPGARFDVSRDFELSAQHWQMLQDSRATIRQISGITPSFMGNRGNATSGRQESIQVEQSNQSLGLVMDNFRQSRSLVGELLLAMIIEDLGSDEQTVVIEGDAVTQGRTVVINRPETDPVTGKAYLSNDLQNIRLKVALEDVPSTNSYRSQQLGAMSEAVKSLPPEYQAAVLPFMVSLMDIPFKDKVIEKIKEVRVQETPEQIEARIAQAVQDALAKSGNDIKRRELALKEQRTASEIKEIEARAVQIGVQAAYAAMQAGGQIAAMPQIAPVADAVMQGAGYVRPARGDDPGFPVPAMPPETQIPPEGIPEAYGADTGPMTAVPPKSANHAQTGMETPTVSDNL
562010..562044                     attR                                                                                 N/A                 AACCGCCCTGATTCAGGGCGGTTCTTTTTTGTTCA

#### region 2 ####
932799..932811                     attL                                                                                 N/A                 TTTTTGTTAATCC
complement(932903..934030)         PROPHAGE_Escher_MG1655: DNA strand exchange and recombination protein with protease and nuclease activity; T556_05245; phage(gi16130606)     7.30e-170           NeisseriagonorrhoeaeNGk5105MTDRFIFRAAARVAPQPTYRICSGVTPMSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEISDEIDAKIRALNGVEMHITEGTQDETDGERPEE
934149..934913                     PHAGE_Strept_20617_NC_023503: 3-dehydroquinate dehydratase I; T556_05250; phage(gi588295145)     4.77e-27            NeisseriagonorrhoeaeNGk5105MHTSLTVKNTVIGSGRTKIAVPLVARDAADLSSVLSQIKNLPFDIVEFRADFLECAGSIGEVLRHTQAVRDALPDKPLLFTFRRHCEGGSFPCSDDYYFELLDALIESRLPDIIDIELFSGETAVRRAVANAQKNGIAALLCNHEFHRTPPQEEIVCRLKQMEDCGADICKIAVMPQSSEDVLTLLSATLEAKRLVAKPVITMSMGQTGAVSRLAGQVFGSSITFGSGTQNSAPGQIGVSALRAALDCLESGAD
934933..936948                     PHAGE_Bacill_0305phi8_36_NC_009760: PcrA helicase; T556_05255; phage(gi156564011)     1.46e-125           NeisseriagonorrhoeaeNGk5105MMKLNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLPKPQTRGLTICTFHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGGTGKEAVFKAQHQISLWKNDLKTPEDVVQTASNVWEQQTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQMKVIKLEQNYRSTARILKIANKVIENNPKLFTKKLWSQLGEGEPVKVVACQNEQHEADWVVSQIVKQKLIGGDKTRYADFAVLYRGKHQARIFEEALRGARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVTLGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKAEIDEAGEFINSLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELAQTVALMTLLEGKDEEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHNDSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEPSRFIDEMPQEDLKILGRKGGEPIVSKEEGRRNLADIIGRIDNLKKSGPAD
complement(937018..938124)         PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; T556_05260; phage(gi431811050)      1.06e-13            NeisseriagonorrhoeaeNGk5105MSDARSKISLLSSAEPMSLRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATVKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGAGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVPPQTEDAFRLIGIGVGRLVPKNQQQDLWA
938865..939755                     ferredoxin--NADP reductase; T556_05270                                               N/A                 NeisseriagonorrhoeaeNGk5105MMIKTVKPNFFIKSSRVRQKKTPKLAIIPTNTLKDNNMAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSRLGFYEGKGFIWRAYSVVSAEYADTLEYFAVLIQDGPMSALFAKMQQGDTILLDKNATGFLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDRLAALSEHPLVGEYGHSFRFVPVTTRAANPSGLSGKRIPELLKNNSIEQALHTKLTPESTRFMICGNPEMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF
939964..941034                     PROPHAGE_Escher_CFT073: prophage P4 integrase; T556_05275; phage(gi26249391)         1.86e-48            NeisseriagonorrhoeaeNGk5105MAAHNKLTQKQIEAAKADGKQSKLADGGGLYLLLHPNGSKYWRMRYRHGGCEKTLALGVYPAVSLKQARELARAARAQTAAGIDPVAEHHRTRPGSGRSLPEIARAWYGSRQGQRADNTLEGDRRSLAYLTDYYKDNTDINDITTAGVSKFIEHLNRINIPACARRTVQILAQIWDYAVQRGIITDERRNPATTARPLLNTSKPKPQPHIRPDELPDFYRTLQTAHDLHPYARPLLLLAALTVPRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVPLSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTPANPNTPCTDSATSSPTSA
940995..941243                     integrase; T556_05280                                                                N/A                 NeisseriagonorrhoeaeNGk5105MHGFRDLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYRLQERRELAEWYGRRHRQAYEAAAQNTCNKT
941263..941526                     hypothetical protein; T556_05285                                                     N/A                 NeisseriagonorrhoeaeNGk5105MADILPSDKRRQPPKTKGNPINIIEQETKRTELRKIDAEIAKIIADAHKINAESVKIAQESRWYPMMAATGLVTAIAAVLALIFKFA
941563..941847                     hypothetical protein; T556_05290                                                     N/A                 NeisseriagonorrhoeaeNGk5105MNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDGECPGGHYRHSENGITLYDFIFFGGKPADEARFAAVLTETCRRAVKKIGSVPD
941869..942522                     PROPHAGE_Neisse_MC58: IS1016C2 transposase; T556_05295; phage(gi15677271)            1.48e-103           NeisseriagonorrhoeaeNGk5105MKITHCKLKKEVQKEPLRSFVPEVTARSAADILGIHPDSAALFYRKIRTVTNHRLALAADGVFEGPAGPGASCFGGRRKGRRGRGAAGKAVVFGIPKRNGRAYTVAADDAEPETLPPAVKKKIMPDGIVYADSPGSRGKSDAGGFTRCRTNRSEEFADRRNHINGIGNFWNQAKRALRKYNGIDRKPFPPFLKGWEFRLNSGTPPRQLKILRDRCGI
942550..942789                     PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; T556_05300; phage(gi971741518)     6.44e-13            NeisseriagonorrhoeaeNGk5105MRNKINRNDMELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPDTETRRADMPLEKWRQFLDWIEKTNAV
943471..943797                     PHAGE_Pseudo_phiCTX_NC_003278: baseplate wedge subunit; T556_05310; phage(gi17313236)     2.18e-21            NeisseriagonorrhoeaeNGk5105MTDAENGRGQDTLAHIAQSIRNILFTRIGTRLMREEYGSFIPDLIDMPAGHAAIALIHQAAVTALARWKPRITVRRIQADTADLAAGKIKLTLDVTLADGGERTYRIK
943818..944612                     PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; T556_05315; phage(gi937533298)     1.31e-47            NeisseriagonorrhoeaeNGk5105MGNSRLSQLPAPAAIEETDFEGIFARKKAALTALCPESIRETVAQTLELESEPLTIDLQQQAYQELLVRNRINEAVKANLLAYAQGSDLDHIAAQYGLSRKTIRAADPDANPPVAAEYETDDAFRARVQAHPEKYAAGPRTAYEAHAIDAHPQITHARAVRRAIGTVEVYIKTQSGTPDETILTAAREYLPAETRRPLCDNVQVTAAQPKDAAVEYSAEYHPAANIQAERQTACEALDNLWRQNAHIGASVALSKIIGALDTPA
944703..945266                     PHAGE_Burkho_phiE255_NC_009237: gp25, tail fiber; T556_05320; phage(gi134288819)     5.72e-32            NeisseriagonorrhoeaeNGk5105MNSTVPANNSPLQHALAKLTERETAAVSRQLDPARCDPGFLPFHAFARSIGTEEGWDFAETDEARRNLIAGFAEIHARKGTPYAIRALFPILRLGEIQIIERDGEFKWDGSVLFDGSRTFGRREGDWAEYRIVLTRPVSIRQTARIRAMLAEIAPLRCELTALDYRNHPHRWNGKIRFNGEYGFGTT
945306..945608                     tail fiber protein; T556_05325                                                       N/A                 NeisseriagonorrhoeaeNGk5105MANATEQNQFDQAVRLIESGDSVVVGPGAPVNQPLQALANRTLLLKNQTEALQTASDTKAAPSHWARPGKSPQQAKTPSQKTATPTPSTPHAPTAPASSD
complement(945605..945937)         keratin 2a; T556_05330                                                               N/A                 NeisseriagonorrhoeaeNGk5105MEDVVVVVGNAVICAVQAQGVVAEDDVGVFVIRADIGFVAAVSVRRVDGQPDAALELCFGGKGFLAGNGLVVGEGDFEVGGRGGGAGLVDRGFDGFGGGGGVFGFANGIV
947605..947934                     hypothetical protein; T556_05340                                                     N/A                 NeisseriagonorrhoeaeNGk5105MPRQSCHSSPFPRKRESGTQTRQESIGKNNPTAVIPAQAGIQTHNVKAVYQKKPKPNALDFRLRGNDEELGSDERREQPRKKPPTPSDGIGNKNRTAETARERIAGRAR
complement(947950..948261)         PHAGE_Aeromo_Aes012_NC_020879: putative XRE family plasmid maintenance system antidote protein; T556_05345; phage(gi472438177)     1.33e-14            NeisseriagonorrhoeaeNGk5105MKMHNPAHPGLVLKEYINGASITDIAKRLGVSRVALSRIVNAQSSITPEMAVRLSQLLNTSPDFWLNMQAGYDLWQIRQRKTFDIAPLFPEPPLSSMKTGART
949474..949486                     attR                                                                                 N/A                 TTTTTGTTAATCC

#### region 3 ####
complement(1172180..1173214)       PHAGE_Prochl_P_SSM2_NC_006883: phosphoribosylaminoimidazole synthetase; T556_06410; phage(gi61806048)     5.84e-82            NeisseriagonorrhoeaeNGk5105MSTSLSYRDAGVGIDAGDQLVEKIKPFAKRTMRPEVLGDLGGFGALVEIGKKYQNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDILVQGAEPLFFLDYFACGKLDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVGVVEKENVITGLSIGAGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLREAVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPKNTVAQIDAESWELPKLFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVRSFLSGQGETVYRLGCIRERQGNEHQTQVA
1173455..1173643                   hypothetical protein; T556_06415                                                     N/A                 NeisseriagonorrhoeaeNGk5105MADGRKGFFDAIIKINIFFFPVKTPTLGAANPIAGGSTRFRFGAEQMAVLYVPFCVLKHIGR
1173642..1173653                   attL                                                                                 N/A                 AAAAAGCCGCCC
1173903..1174892                   PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; T556_06420; phage(gi109289985)           2.46e-101           NeisseriagonorrhoeaeNGk5105MATITQRNGKWRVQIRMKGVSRSATFERASDAKAWAARIESQIMDGIQGNAPRNTIFADLIRRYLSEVTPSKRGAREESYRIGRALKTPLAKVRLADLRPQDFADWRDQRLQEVSPTSVGRELTTLSAVCEHAMKEWGLLRENPVRKISKPKKSRARTRRPTEQEIADICAALLYRPNEKPKMAVQRVAVAVLFAIETAMRAGEICGLKWADVNMRRRIAHLPITKNGDSRDVPLSLRAAELIEQLRGIDDTWVFSLDAKSLDVLFRRARDNCGIQGLHFHDTRREALTRLSKKVPVEVLAKISGHRDLRILLNVYYRPDMADIAKMLD
1175234..1175713                   membrane protein; T556_06430                                                         N/A                 NeisseriagonorrhoeaeNGk5105MTDNLIQIATPILTVIGVFVAAYGIMRNTENAKKRATIDMIMAERNNAALQEAITIVNGLAKTDGCILATYTSDTPDKKKDREAILTVLNQREFVCAGVLGGALHEKMYKDFEYSMLLRDWDNLSSFIFEIRRIRSAPTAFQEFEAVARKWKKKPLKTK
complement(1175773..1178817)       PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019: tape measure protein; T556_06435; phage(gi971766224)     6.89e-49            NeisseriagonorrhoeaeNGk5105MSDLEAKVRITVENHTKQGFDSAAADADKAAEKMRSSGDNAAKGFKAAIDSMHETMRNLHADVKAGFEAAGNQAQQASEKVRAEVGKIGSGLSGLTKLLAGLATADFAKSVLDTADAMQLINSQVRQVTSSETEYLAVQQQLLDTANRTSASLESTAKLYVSTSRALKDYGYTQQEILKFTEATNNAMTIGGVGARQQAAALFQLSQALGSGVLQGDEFKSISEAAPILLDTIAEYMGKSRAEIKKLGSEGKLTADVIFKAISGASEKFGEQAAKMPVTMGQALTVFSNNWQSMVSKLLNDSGTMSGIAAVIKLIADNLNLVVPIVAGFAVAVAAAVAPTLALNLALLANPFGIIAVAIGTVVGLIAKFGDEIDVFGGGWSNLSDVIRAVWQIITETVGEAVGTVKSWFDGLTGRLNEGAGGWPSLFGRVMSVISSAIGAYVNVYINIFATGWMLIKEAANDMPQFFANLGKAIGNVFISAIERMINKAVGMINSMIDFANKAASMAGISGIGKLNKVRMGRMDDGGLGERIHDSLTKDRAGAMANAVRERAADIHEADALKGRGGGGHAKTARKKPGANQGGGKGGKSRSGGPGAAKDPMQAWEGEIKARKLAHREMQRETLTHQEWDLAREAEYWRAKLATVDANGKTGVKIREKILTLEDQLSKQSTEAKMNQAAEWEKLDKHKLEMEKDAADQALADGRISQLERLDLEIEFENRRYRIAYDALQERIALAEQDPAYSQAAIGKLKAQMGELGRGHERTQAKNEGKRENQRRKDAPNVMEMLQDGGRNVWQEAQQQMGQAFTAMLARAQNFRQAMNGFFKSMGQTFIQEMVTKPLTGLMRRMVEESAIYKMIFGTKETLETAAAAKTAATKATETTAVVSSNAVQAASGAAASQAHIPYVGPILAVAAMAAMMSAVMGLMGGGGSQTTTTTTRIPSAAGGWDIPAGINPLTQLHENEMVLPAEHAQTIREMADQQGGGSTVIINSTGGDFIHKNDLAKLLKQMKRDFKFV
complement(1178847..1178996)       hypothetical protein; T556_06440                                                     N/A                 NeisseriagonorrhoeaeNGk5105MNAEGFCEKQTACRPDGRRNAGDRADLKAFEFAGRELANYREMLKRYAV
complement(1179138..1179311)       hypothetical protein; T556_06445                                                     N/A                 NeisseriagonorrhoeaeNGk5105MSCQPEVCNRTVNFRLTAASGEASAFPPIFYISGGRGKFLPFCLREGGVIQNYQAHQ
complement(1179308..1179481)       hypothetical protein; T556_06450                                                     N/A                 NeisseriagonorrhoeaeNGk5105MTTAVKPPADLVRPCPKLPHLEGNTGADVLPWALKAAGMYNDCRARHGALVRALGAD
complement(1179465..1179806)       PHAGE_Entero_vB_KleM_RaK2_NC_019526: hypothetical protein; T556_06455; phage(gi422936900)     2.82e-06            NeisseriagonorrhoeaeNGk5105MNGLIKNPKLIAVSVCAVFVAGAWQYDRAAQYRRGYGAAMLEVSERLKAAAVEHAEHARKSSAAYQAQKAAREEKERVRYVQTLKIIEKPVYRNACFDADGVRELNAAVDDGG
complement(1179790..1179948)       hypothetical protein; T556_06460                                                     N/A                 NeisseriagonorrhoeaeNGk5105MMNPTEFLKARIAEWEAKSKEAGGNADFKAFEFAESEIKNYKAMLKTYERPD
complement(1179948..1180487)       PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019: endolysin; T556_06465; phage(gi971766245)      3.33e-63            NeisseriagonorrhoeaeNGk5105MKELKWIEEARKYLGAHEKVNGKSNPVLLAMLQEMGNFNQEQKAWWKETDTPWCGLFVGYCLGKAGRAVIRDWYRAKAWSMSGLTKLEAPAYGCIAVKPRRGGGHVFFVVGKDAEGRILGLGGNQGNMVSIIPFDPADIDGYFWPSKLIGGKPVPSSPAEGRYRLTAAAATGAQGAGEA
1180694..1180930                   multidrug transporter MatE; T556_06470                                               N/A                 NeisseriagonorrhoeaeNGk5105MLRLQKWGNSAAVRLPARLLTALNAKIGDALETEIRNGELLIRPVKRYRLSDLLAETEAAPPRAEGWEEMPDVGQEGV
1180930..1181277                   PHAGE_Strept_EJ_1_NC_005294: transcriptional regulator; T556_06475; phage(gi39653708)     1.81e-11            NeisseriagonorrhoeaeNGk5105MYIPERGDIFHLAFDPAAGTEMKGGHYAIALSPRAYNRATGLVYACPISQGRAAAARSGGMISTLLGAGTATQGNVHCHRMKALDWKIRRAAFRETVPDYVIEDVLARIGAVLFD
1195499..1195510                   attR                                                                                 N/A                 AAAAAGCCGCCC

#### region 4 ####
1181694..1181705                   attL                                                                                 N/A                 TCCGCCAAGCCG
1187154..1187600                   PHAGE_Pseudo_phiKZ_NC_004629: ORF114; T556_06505; phage(gi29135050)                  1.28e-16            NeisseriagonorrhoeaeNGk5105MKPLNFSGGSLDCLRQFPENAKQAAGYQLQEKPENRGRRFGIGGKTLQQIDSGKEIMESQTFASVFDALCDTPAQAANMRLRAGLMMHIADTVRENGWTQKQAAEHCGLTRPRINDLLNGKIDKFSLDALVNINAGLGQCISLSFAPA
complement(1187628..1188059)       PHAGE_Roseob_1_NC_015466: phage cell wall peptidase; T556_06510; phage(gi331028137)     1.85e-13            NeisseriagonorrhoeaeNGk5105MPSETDLRARIVEEARSWLGTPYHHHAMVKGAGVDCAMLLVAVYGAVGLLPEGFDPRPYPQDWHLHRDCERYLGFVTQFCRETESPQAGDIAVWRFGRSFSHGGILAGGGKVIHSYIGRGVVSDDIGQAELIGRGVRFFTFSF
complement(1188061..1188915)       PHAGE_Caulob_magneto_NC_019407: putative tail protein; T556_06515; phage(gi414088603)     5.68e-20            NeisseriagonorrhoeaeNGk5105MKAATKELIDLLHGGDEFQMADLYTITLSGGRVLRHTGADMPVVWDGQAYGAHELVIKRGATRTAVGLEVDSNTLQISAAPDYRLEGLQWAEAALGGVLDGARVKIDRVFFDAGLRPVGAVNIFSGRVSDVSGGRSSVKVDVKSDIELLNVSSPRNIYQAGCMRTLYDDGCKVNREKFTVNGRVTENSRTGTVLKHNLTQPDGWFSQGVIKFAGGRNAGLSRTVKAHGGNTFELALRLPYPPQAGDAFKVYPGCDKRRDTCKDKFDNIVHFRGFPFIPSADTVV
complement(1188912..1189511)       PHAGE_Caulob_rogue_NC_019408: hypothetical protein; T556_06520; phage(gi414088956)     6.40e-05            NeisseriagonorrhoeaeNGk5105MGNAVFPEFPGLKWGRKKTAVWSTGTQKSASGREFRTAYYTYPQWRFSLSFEVLRTKASVNELEKLAGFFNARKGSFESFLYEDPADNAVTDQPVGNTVQGVARYQLVRSMGGFIEPVSAVKERPAVKVGGTALAYGRDYTVTDKGVLVFNTPQPPGRPITWTGGFYFRVRFTSDTVDFENVLGSLWAAKKIEFTSVKL
complement(1189511..1189777)       hypothetical protein; T556_06525                                                     N/A                 NeisseriagonorrhoeaeNGk5105MIAHVCASTGWTWDYVADNLDLPRIKHLNEYWREHPPVHILAASYMGVKPSSGSVQSEADEAEAVGMLGGGELSEDEFNALLKAKGII
complement(1189789..1190118)       hypothetical protein; T556_06530                                                     N/A                 NeisseriagonorrhoeaeNGk5105MTVRIKGVTVELNGADYVIPPIALGALEQLQERIGSFDGNAADAGQISTVIDCAHAALKRNYPDLTREEAADLIDIGNMNEVFAAVMDVSGLKRREQEAAQAGEARAAD
complement(1190179..1190952)       hypothetical protein; T556_06535                                                     N/A                 NeisseriagonorrhoeaeNGk5105MQLTFGSGEVFAQMITDAYGNRVQNATPVRIMGLQEMSVDLSAELKEFYGQNRYPLAVAQGKVKVSGKMKGALINGLTLNTLFFGTEYATGTMKALWAETTGKVLDGDNYSYLQAAAPGGGKFAEDAGVMGQDGTAYIKVASSPKQGQYTVSESGVYAFNSSDKGKTVYPSFTYTQTMPPAKKIELTNMATGNTPTFKMRYLTQFKGKKALLELESVTSGKLGLFSTKNDDFSVPEIDFTASTDEAGFKIGTLWIQE
complement(1190978..1191406)       hypothetical protein; T556_06540                                                     N/A                 NeisseriagonorrhoeaeNGk5105MNREAVYSALWSKLDALDGFVTKSRKLVHWNDVKRYDQPALFMAQGDMQALTLTGRETKWILRADVYLYVQTAGQPPAPVMNPLIDAVCNAVNAVHPVTGKTDLTADGADIEYCRVEGTVETDEGTLGEQAVCIIPIVICAA
complement(1191403..1191885)       PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; T556_06545; phage(gi481019160)     3.33e-07            NeisseriagonorrhoeaeNGk5105MLKMEFIGGGILAAVFKAYAADVQDAVVKSVGRSALRLQREVKQNRLSGRVLRVRTGNLRRSVHQRVNVSGNVVSGEVDTNVRYGIAHEYGFAGSVNVKASLRQVRQAFGKPLKPPRYVRVRAHTRDVKLPERSFLRSALRDLTPKFADDLQKSIGKVLK
complement(1191885..1192415)       PHAGE_Strept_phiSASD1_NC_014229: gp29; T556_06550; phage(gi298103494)                5.78e-07            NeisseriagonorrhoeaeNGk5105MAAPVSLEEFKQRIGVEHDRRDDFFLSVIDGVSAAAEAYIGRSLLAADYVGRYDGNGKDRIVLDNYPVLSVSSVKINGADAGGWEFDNWLLMRPEGFARGLKNVEVSYRAGYERMPADIREAVMIIAVQRVNEIEGKGVRSKTLAGETVAFSTFGNSGGMPPSAFAILNEYKRKGV
complement(1192418..1192780)       hypothetical protein; T556_06555                                                     N/A                 NeisseriagonorrhoeaeNGk5105MPSENQTAFSFGDFEMTVKLKAPEGFTDVSFGSQSYAADENGIVEVPSEAAEFLYQFGFGNVASEPAEGPEKAKRGRKPKTGQPAGQSEPAEAAEPAEAEAEAAEPAEAEAEPAEAEKAE
complement(1192787..1194286)       PHAGE_Thermo_THSA_485A_NC_018264: hypothetical protein; T556_06560; phage(gi397912636)     2.98e-32            NeisseriagonorrhoeaeNGk5105MNVNQLTQETIELMKSAQAGGGPPDKGFTQPAGFTAGLQTYDLSAPSQKLYPVLTPLRNRIPRVGGGRTIGSNWKAVTNINVGNQRAGIGEGRRGGVINHETVERNAQFRAIGLENQVTFEADYAARGFEDVKALAVAQTLQATMVAEEMILLGGNTSLKAGVTPTPTAVVSADAAGKISVSTLSVICVALGLQAYWDVAGANNGATGQSPNIKTAQVPAKITRRNADGTTDTFGGGSARKSAAASVSGIEAGKKVTAVIPAVRGAVAYAWYWGAAGSEKLGAVTTAAKVEISADAEGTQTAASLPSEDNSTSILEFDGLLTQIALPDSGAFWSDNKGGGLTSDNAGGVYEFEEAFAHFFTRYRLSPDTVYVNARDLAALTKLIIGNSGAPLIKLNVDVNNTANIRAGVVVGSYMNKITGDDLNIVVHPNLPAGTYLFYSSRLPAYVQGVGNLLQVRTRQEYYQIEWPLRTRMYEYGVYADEVLQGMFMPAFGMITNVG
complement(1194327..1195484)       PHAGE_Thermo_THSA_485A_NC_018264: hypothetical protein; T556_06565; phage(gi397912637)     3.71e-24            NeisseriagonorrhoeaeNGk5105MTKLYAQIAKTEAQDDGTVKVWGYASSEAVDSDGEVVAAEAMKAAIPDYMKFGAVREMHGSNAAGTAIEINVEDDGRTFFGAHIVDPVAVTKVKTGVYKGFSIGGRVTARDDLNKSQITGLKLTEISLVDRPANPDAVFTCFKADKPKDEAGAADKDGKPSDKPTEEEDENPKDGDKGPKTEDKGDKDAGKKDEAGKSASVELSESEIAALKAVLAKADKPKGGPAAKSMYQVKSPADVLMSLKWLVEDASYDNIDEAVTAQIKESAAGLAESLKALAASEADKPADGLAAKAGKSGDLAKAESADELAKAQDALKKSNDALAKAQAEIESLKKQAVPPKGSTKAISKAEDNGEDPLKGFQPIVKNDGTLDDVATLIKAKQTGRL
complement(1195552..1197699)       PHAGE_Thermo_THSA_485A_NC_018264: hypothetical protein; T556_06570; phage(gi397912638)     2.23e-56            NeisseriagonorrhoeaeNGk5105MSKKTPLSQGFIARVAAGVRYAFTGNADGWFDAGEPPAPAAQQAEGRRFDYEPFYNVGHSKPREREAVGFAQLRALADNYDVLRLVIEARKDQMECLKWTIQKRDVESTEDDESQRKDRKVDEAVAFFRSPDKEHTWADWLRILLEDLFVIDAPCIYPRKTLGGGLYALEVMDGATIKRVLDNTGRMPLPPDTAYQQILHGMAAVDYTADELIYRSRNNRSYKVYGYSPVEQIIMTVNIALKRQVHALEYYTAGSVPDALVGVPETWSADDIRRFQEYWDLLLSGETAQRRKMRFVPGELSRNFRETKQPPLKDVYDEWLARVVCFAFSVEPTPFVAQVNRSVAETSREQSLSDGMGSLKNWVKALIDDVLARYMDMAAYEFVWKGEESLNPKEQAEIYAIYKNAGILTADEIRAELGKEPLPGQGQPEPDKQDGRKPEEPPNQGAEKLGKSESPMSEDESAALIEAYLLTRIDGLAEQIAALIEGAAVDWQAGDLAAELSRAAGVVANGLDFGDWSGLSDVVEPIIRRVAEDGAVAALLRVMPEPAAGMVTNIRSRAVKWAHERAAEMVGMKRAGGGLVRNPAAEWQITEGTREMIRAQVAEAMRNGDSVQELAGRLKESHAFGNARARTIARTETAMADGMGNLIGWEETGLVAGKQWITAKDDKVSDVCNANGGMGVIGLHEPFSHGALTIPGHPNCRCAVVPVLAGDMPES
complement(1197696..1199117)       PHAGE_Acinet_Bphi_B1251_NC_019541: hypothetical protein; T556_06575; phage(gi423262000)     0.0                 NeisseriagonorrhoeaeNGk5105MALGQFDDVETSVIRSLSSASLYMFTRRMFYQRRGYVWQRANHHAPICNALERVFNGETKRLIINIPPRYSKTEIAVVNFIAWAMGRVPDCEFIHASYSAALAVNNSVQIRNLVQHEEYRAIFPDLALAGESGHHWKTTAGGVMYATGAGGTITGFGAGRHREGFGGCIIIDDPHKADEARSEVRRQNVIDWFQNTVESRKNSPDTPIILIMQRLHEKDLAGWLLDGGNGEEWEHLCLPAIQEDGTALWPEKHDIETLRRMEQAAPYVFAGQYLQRPAPPDGGTFKPDNLQFVKALPAGNIRWVRAWDLASTANGGDYTAGGRLGVTEDGRYIIANVVRGRYGADERDRILRNTAQKDGVKTKISIPQDPGQAGKSQTLYLTRQLAGFSVSAGPESGDKVTRAGPFAAQVNIGNVMVLDDGTWDTDALIAEMRMFPNGRHDDQIDCLGRAFGELLDTRTGMIDFLRSQVEAVK
complement(1199179..1199628)       PHAGE_Entero_Sf101_NC_027398: terminase small subunit; T556_06580; phage(gi849122263)     2.18e-31            NeisseriagonorrhoeaeNGk5105MSGTKRKLGRPTDYTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYARAREKQADYFAEEIIEIADSAQAESAAVSKAKLQIDARKWAASKIAPKKYGDKTELDVKSGDGSMRAAVRLDAEEYRKIAEDVLRRV
complement(1199850..1200917)       type I restriction enzyme R protein; T556_06585                                      N/A                 NeisseriagonorrhoeaeNGk5105MGWEFAQSNLTKEINMNAAAVSAVFKERIASHAEHVKKVAHICTTEETTKQALILPLLDILGFSAFDPNKVRAEYQADFPGAKSGERVDYALFCNGAPVMFIEAKSYTENLSNHCPQLSRYFNATPEIAICAITNGREWRFFTDLSNKNIMDSEPFLTVDVTMLNENDMAQLYQFRHDKFQPDALRSLAEESIYLTAFTESITESLKEVDLDFVRYVAGRANIQRQFTQRYLESIRHIVKQAVQNTVSSMVVSGLSAPKVQEEAAPVEKEQEDPTAPIIDPENNKIVTTYSERRLFDLVKSILPDDASIEAKDTESYFGVLVDGKSNRWILRYFDNKQMPSESSDGLLFFPAIGV
complement(1200963..1201370)       hypothetical protein; T556_06590                                                     N/A                 NeisseriagonorrhoeaeNGk5105MNQQEFEFMNDLARAFERRYRDTRSLNRCLSIEGRYMGEEACPHKPEIGLRYGEDAMFLTLQAWAKVDAPQQEAVRISFGIGAKSQAAYEERLQAEIRRRGEGPLHLQTDLGLAAWYRAIRQAAGNDFDLLFEKV
1201391..1201495                   hypothetical protein; T556_06595                                                     N/A                 NeisseriagonorrhoeaeNGk5105MQQNQSPHYTFREGRLNFPFRTIRQAVLYIKTPK
1201492..1201620                   hypothetical protein; T556_06600                                                     N/A                 NeisseriagonorrhoeaeNGk5105MIPNSTAARACTVSDMADLGRNAEPPAIAANNTTYIRHFLQM
complement(1201637..1202224)       PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; T556_06605; phage(gi148609431)     8.92e-08            NeisseriagonorrhoeaeNGk5105MPSRARKGGLLLQIVQNLPQQGSPAKARGKTRGGGSRRDDGGKAARIHPRRARRLPDIGRRPVDATGRGMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGAGAMPSEGAVAVYVRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVAGGGLAVEVGELDEK
1202209..1202319                   hypothetical protein; T556_06610                                                     N/A                 NeisseriagonorrhoeaeNGk5105MRGTALNPFSNGLVPPQALQVRISSAILIFPFVSVA
complement(1202642..1203205)       PHAGE_Mycoba_Gengar_NC_031035: hypothetical protein; T556_06620; phage(gi100045)     3.68e-08            NeisseriagonorrhoeaeNGk5105MGISQPTRDLKNALKRKFERKYGMTVRNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRADAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAGGGI
complement(1204245..1205255)       PHAGE_Aggreg_S1249_NC_013597: hypothetical protein; T556_06630; phage(gi100046)      3.02e-17            NeisseriagonorrhoeaeNGk5105MSARLMGMAFKTGIPRGQRFVLVKLCDCANDEGLCYPSQETLAEDTGFAETAVRQHIKWLKDNNFIKSARRQRGRERKSDIYRINVALLEKCYAEAAKRKAARQAKMWEEPLDYEPSDFEPSDFEPSDYEPSDYEPSDFDAKNHQILSGEPSDFALRTVRFCAKNHQILSGEPSDFDGSLYVEPSVEPSVEPSGSNARGARAPAGPHPAKPQTAPPETAPAAKAKKTGRHETELSLLADYGITGQVAADFLQVRKAKRQPLTETAVRLIAADAEKCGMTALQAAEYAIASGWGSFRADWLQNKTFGRSGNRGGLTHNQTAAVPDAGSYGDMPTTDF
complement(1205252..1205479)       hypothetical protein; T556_06635                                                     N/A                 NeisseriagonorrhoeaeNGk5105MNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTQLAARITDLEGRGFVFAKPRMKAGGRGKPVTHYSIVKNGAEV
1205652..1205840                   hypothetical protein; T556_06640                                                     N/A                 NeisseriagonorrhoeaeNGk5105MPSDLSFILAKELIRSGSIRLSGSTAKGQAGELAVFIRTLHQKPEESEPNTDDEYLIGLLSK
complement(1205817..1205972)       hypothetical protein; T556_06645                                                     N/A                 NeisseriagonorrhoeaeNGk5105MKKQDRNRLSKKDRRLIKKAMLKAAAKGCDEVYRIAPGLKDGFELLGKQPD
1206461..1207099                   PHAGE_Shigel_POCJ13_NC_025434: putative transcriptional regulator; T556_06650; phage(gi725949713)     1.92e-38            NeisseriagonorrhoeaeNGk5105MPVKDKSLLSQLMSGKASFGEKVSRRLEEEYGMGSLYLDSVPSEPTPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDYNGYRLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWSVLD
1207259..1207798                   PHAGE_Salmon_vB_SemP_Emek_NC_018275: hypothetical protein; T556_06660; phage(gi399498806)     8.69e-37            NeisseriagonorrhoeaeNGk5105MLNAYDVADFFLSPFEEEDGEQISNLKLQKLLYYAQGYALAILNRPLFAENIEHWQHGPVVPCIYRTYKKYGGSPLPAAHIEPDKYADEELVVLNRVRKEQGCYTAWALRNKTHQEAPWIQTRQGEVIGIALMGEYFRHALPQTDYNFNLEKLKTAVEDSFVSVPHFNGADDLEKWLEQ
1207799..1208158                   hypothetical protein; T556_06665                                                     N/A                 NeisseriagonorrhoeaeNGk5105MQVLLGEDFKRALKNYPKEDRRKIAEFIAHVQQNGLSGLPGRNKSSDNVPADDPQWLEKVRFAQRHNLWHYHIGIPKYNGGRYGDLTSAYILHYTLCDGFIKIIGFDRHPPFILPDIPK
complement(1208175..1208393)       hypothetical protein; T556_06670                                                     N/A                 NeisseriagonorrhoeaeNGk5105MANSNSGHSKKLRAATAAAATKAKLASGEYRQFSVQGRAEDVELILAAVEKAGGSRVQALAKICRRYLEGLS
1208877..1209077                   hypothetical protein; T556_06675                                                     N/A                 NeisseriagonorrhoeaeNGk5105MNELISRINRFGARAKDGQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
1209110..1209586                   PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; T556_06680; phage(gi197085698)     1.05e-32            NeisseriagonorrhoeaeNGk5105MEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
1209583..1209870                   hypothetical protein; T556_06685                                                     N/A                 NeisseriagonorrhoeaeNGk5105MSYLDQPLKHGYGNGNGSGNGSGYGNGYGNGYGNGYGGGSGSGSGSGYGNGKGDGDGSGNGDGDGNGNGSGNGSGNGDGDGNGNGSGNGSGYGNG
1210011..1210343                   hypothetical protein; T556_06690                                                     N/A                 NeisseriagonorrhoeaeNGk5105MKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESALIGIAKKSAREFVRDADGEPYSQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
1210496..1210774                   hypothetical protein; T556_06695                                                     N/A                 NeisseriagonorrhoeaeNGk5105MKTRNIAFKFAVLAAVLAAGYAFGFAKGGGSRTAKGKPAGIAAMRMALAQKQAEVAELSAEIWLEERHLNADEEEAGCRRVHGDAEVPGGKE
1210771..1210932                   hypothetical protein; T556_06700                                                     N/A                 NeisseriagonorrhoeaeNGk5105MSFHPETAYNGSGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
1211001..1211687                   PHAGE_Pseudo_RIO_1_NC_021300: putative ssDNA binding protein; T556_06705; phage(gi508178031)     1.94e-10            NeisseriagonorrhoeaeNGk5105MSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKHPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGRTEHPQGNAAPAEDIEDDIPFN
1211785..1212009                   hypothetical protein; T556_06710                                                     N/A                 NeisseriagonorrhoeaeNGk5105MQLLRTATEKGNKKMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
1212006..1212497                   PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; T556_06715; phage(gi374531698)     2.27e-19            NeisseriagonorrhoeaeNGk5105MTALTLYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEEHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGRQVAGAKIEGRKNLQIR
1212549..1212764                   hypothetical protein; T556_06720                                                     N/A                 NeisseriagonorrhoeaeNGk5105MSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
1212875..1213858                   hypothetical protein; T556_06725                                                     N/A                 NeisseriagonorrhoeaeNGk5105MQTVATKPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLSLQDMRYACNQELINFAEHIVKQVQRLGLYCNTDDPANGESVLFACREASQAVAQWTKDFDDLSPNQRQLVLRPLSNLFAAYEEFLKDAPARLIAEVSAYSLAVRVAKKAMAFLELDGGLISAVGKVVNGADSRAEARRLKMPYAEFTGRILHAANLLYDVGIQADKELSAMYGKPLNPVRPRRISDVRRPMMKMLVADKGGALVRAVKDSEDVIRHCDNGAGFSCFNWTEHFKRTANLISLMHREAAA
1213855..1214085                   PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: hypothetical protein; T556_06730; phage(gi971749633)     3.59e-13            NeisseriagonorrhoeaeNGk5105MRTHIRTCVYHDSGTKGFKHGIRHKRHGCRRGGTSVFQRGEDGKPQRVSRIRKRSATPGQARERTKTHDVSRTQQP
1214057..1215004                   PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; T556_06735; phage(gi970580043)     2.34e-116           NeisseriagonorrhoeaeNGk5105MTFQGHNNRKKAGGYAEYITGGSLRRLVAAKVRRYCGEHPGVFDGAAGSGQLEQYIEPSDFRAVEIQAEACKALLQNYPAAKVYNTSLFLYTDGEPQDCTVMNPPFSIKLKDLSEDEKSRIAQEYPWKKSGVADEIFVLKGLENARRFGFFILFPGIAYRKSEQRFREIIGNRLAELNRIQNAFEDTPIEVLLLVIDKDKTDGGCIRELYDCKTDTLLAADTWQIEPDLWQTVQEPAPPKEKEDPVLLEHECRDAAAKRIARELRFSKMVNEIEGWPHAEFDGFCDRLCNLIQAEKYGKKHYFPCSLPLFGGAAG
1215051..1215062                   attR                                                                                 N/A                 TCCGCCAAGCCG
1215112..1215378                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; T556_06740; phage(gi428782341)     6.77e-06            NeisseriagonorrhoeaeNGk5105MNISKEQGLLIAYGGRPYIPPREVHKDFFAHIGFNAFKASGVRCELPFPIFRLSDSRKSEYFVSVRELAKAIADKEEKAKSEYRKFRS
complement(1215428..1216591)       PHAGE_Burkho_AH2_NC_018283: integrase; T556_06745; phage(gi399529076)                5.94e-56            NeisseriagonorrhoeaeNGk5105MVQMATITKRRNPSGETVYRVQVRVGKKGYPAFNESRTFSKKALAVEWGKKREAEIEAGPELLFKRGKVKMMTLSEAMRKYLNETLGAGRSKKMGLRFLMEFPIGGIGIDKLKRSDFAEHVMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNMVAKSAIRDRLPTTEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDDWHKNDCTRPVRDLKNPNGSTGNNKEFDILPMALPVIDELPEESVRKRMLANKGIADSLVPCNGKSVSAAWTRACKVLRIKDLRFHDLRHEAATRMAEDGFTIPQMQRVTLHDGWNSLQRYVSVRKRSTRLDFKEAMMQAQSDIKSGK
1216672..1217718                   tRNA-dihydrouridine synthase A; T556_06750                                           N/A                 NeisseriagonorrhoeaeNGk5105MFELKECENLMINKELIEHKGKRRLCVAPMLDWTDRHYRYLARQITRNAWLYSEMVNAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEEYGYNEVNLNCGCPSPRVQKGAFGACLMNEVGLVADCLNAMHDAVGIPVTVKHRIGVDRQTEYQTVADFVGTLRDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPELEIIINGGITTNEAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDNRAPIEYADLVQRLYTYSQVQIQAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDATLLKDNDGGLIFEAWKEVERANTRE
complement(1217788..1218675)       glutamyl-Q tRNA(Asp) ligase; T556_06755                                              N/A                 NeisseriagonorrhoeaeNGk5105MYTGRFAPSPTGLLHIGSLLTAVASYADARSNGGKWLVRMEDLDPPREMPGAASHILHTLEAFGFEWDGEVTYQSRRYALYEETLYRLKTAGLVYPCHCNRKDWQAGARRGTDGFVYNGRCRHPGQRPALQGKQPSWRIRVPDRDIGFSDGIVGSYTQNLARDIGDFVLFRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLGVPTPQYAHLPLLTNAQGQKWSKQTLAPALDSNRREQLLRQVFRYLKLPEAPETDRPAELLDWAVAHWDMDKVPKHAITAP
complement(1218692..1218982)       hypothetical protein; T556_06760                                                     N/A                 NeisseriagonorrhoeaeNGk5105MAKALEIISPDEIYSDLIFKDPVPPHTIYTELMKLVGRNAGNERIADRAFDFFSPALMDDSATEEQYNALYDLTLLEEPGMELDKDEITALINSLK
complement(1219133..1220188)       PHAGE_Synech_S_SSM7_NC_015287: transaldolase-like protein; T556_06765; phage(gi326783962)     3.15e-06            NeisseriagonorrhoeaeNGk5105MTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNLTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIQVVASFFISRVDSALDATLPDRLKGKTAIALAKAAYQDWEQYFTAPEFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAFIDHGTAKATLTESADEALARLAEIAALGIDVETLAARLQEDGLKQFEEAFEKLLAPLV
