gi|00000000|ref|NC_000000|  Pseudomonas denitrificans ATCC 13867, complete genome. [asmbl_id: NC_000000].5696307, gc%: 65.24%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
962833..962844                     attL                                                                                 N/A                 CAGTTTCAGTTG
complement(972128..973081)         PHAGE_Sinorh_PBC5_NC_003324: hypothetical protein; H681_04455; phage(gi18071235)     3.30e-05            MIRRTRLALAGAAFLAVCATAQAAPVFINILTGGTSGVYYPVGVGLSQIYSHGIEGSKTSVQATKASVENLNLLQAGRGELAFALGDSVADAWKGEADAGFKTPLKKLRAIAGTYPNYIQIVASKESGITSLADLKGKRISVGAPKSGTELNARAIFKAAGLSYEDMGKVEYLPFAESVELIKNRQLDATLQSSGLGQASIRDLASTMPVSFVAIPAEVVAKIGNNAYLPATIPAKTYDGQDADVPTAAIVNILVTHEGVSDELAYQMTKQLFDNLPRLVTAHAAAKDISLDKAAKNLPIPLHPGAERFYKEKGLLP
complement(973195..974550)         chloride channel core protein; H681_04460                                            N/A                 MSDQSANLPSRNLADSEPNVSRARRFYHSRWRLWRQHLAFWVGALLVGLLALAFAWLADQSFALFKRTLGVAPWLPLLVTPAGFALLAWVTQRWFVEAKGSGIPQVIAALESPSRRFRAQVLALPVAAVRMVFTLGALLVGGSVGREGPTVHVGAAVIYAFGRRLGLHGRRTIAGLILAGGAAGIAAAFNTPLAGIVFAIEELSRTFEQRFSGLVLTAVLIGGAVTLGLMGHYSYFGEIGGSLPAGWGWSEVPACALLGGLLGGLYVKLVLPTRVGWLGRMCRLRERFPVRFAGACGLLLALLGLASGNHVFGTGYEETRALLEGQPMTEQSFLLWKFLANVVSYLAGIPGGLFSPSLSIGAAFAPLLAQLPDVNPQTCALLGMGAYLAGVTRSPLTASVIVLELSHSPDLLIPMLAATVMAATVSGWIAPVSLYHALARQILDKLAPNKP
complement(974663..974848)         PROPHAGE_Xantho_33913: ISxac3 transposase; H681_04465; phage(gi21231086)             1.08e-10            MESFFRSLKAERVYLTRYASYQEAKTDLFDYIRFYNHRRRHSTLGYLSPMEFERRNASSSS
complement(974824..975477)         PROPHAGE_Escher_CFT073: transposase insF; H681_04470; phage(gi26249410)              9.77e-58            MCRLLQVSRSGFYAWQQRPPSAREMANRRLSQEIRTIHHEVNGIYGHRRIKAELAAMGHACGRHRVARLMREAGLRVRSRKRWRLVSSSRHALPIAPNHLDRQFASDRANRHWVSDMTYVRTAQGWLYLAVVLDLYSRAVVGWAMHHRMQQALVHAALEMAVARRQPKEEVLLHSDRGSQYCAYDYQALLRRHRIVPSHSRPGTAGTTPRWRASSVR
complement(975525..975818)         PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; H681_04475; phage(gi24373865)        1.20e-12            MTQTRRRFPESFKREAVDQVLAGTPLRHVAETLGIAESLLGNWKRQYEQQGEDAFPGNGKQRGESAELRRLRQQLAQVTMERDVLKKALAIFSQPTK
975956..976846                     PHAGE_Burkho_phi1026b_NC_005284: gp58; H681_04480; phage(gi38707948)                 1.60e-12            MPRHNFNDLQAFVTVAREGSFTRAAAHLGITQSAVSQVVSALEARLQIRLLTRTTRSVSLTAAGERLMDAIGHRFDEIEAELDALTELRDKPAGKVRITCGDNIIKTTLLPKLIPLLAAYPDIKLEFDINYGFRDIVADRFDAGVSFSGTVAQDMIAMPIGGDLRMAVVAAPSYFAEHPIPRHPNDLAAHRCIDIRFPTYGGVDAWEFERKGKKLRVRVDGQLVFNTTTHIADAAVAGLGIAYLPEDEFDPHLEEGRLIRVLEDWCEPFSGYNLYYPSRRQPSPAFALVLEALRLT
977027..978058                     PHAGE_Bacill_PfEFR_5_NC_031055: hypothetical protein; H681_04485; phage(gi100021)     7.28e-08            MKLMRIGVDLAKNVFQIHGVDCHEKPIWRQRLQRDLWLQALLEQAEPGCVIGMESCGGAHHWARQLEARGFQVKLIAPQFVKPYVKSNKNDANDAEAICEAMSRPSMRFVAIKTVEQQDIQATHRIRAGLIEQRTAKANQIRGLVAEYGLIAPKELLSLRRAIPCWLEDADNGLTPRFRHLLDGLWGDLRALDARVRELDSEISVIAANEPDALCLQQLRGVGPMIATALVAAIGDARQFANGRQFAASLGLTPKQHSSGGKDRLLGISKRGDAYLRTLMVHGARSALRTANSKDDRLSQWIVRLAERSHANVAAIALANKTARMAWAILRNGTDYQPDRAAA
complement(978477..979208)         hypothetical protein; H681_04490                                                     N/A                 MNHISKLCIAGILLAPWGASQAFQLNDDLSLDLNIGAYSDYHSRGMSQTQNDPAIQGSVTLSHSSGLYAGVWSSNVDFGYGSKTRQEIDYYAGYYWKITDNVSLDLAYFEYEYPKESKLNYSETYAKLSAYGIYAGGYYSGDMGGDQSYLYSFVGYETALPMDIGLNIRYGLVDFKDDILVDGNGSTASTYNEWQVSLSKKLLGLDWSLAYVDSNLSNDECASYNGFDDVCGSNLVLGVSKSF
complement(979477..979896)         hypothetical protein; H681_04495                                                     N/A                 MSDLGCDRLVIDALPGPGFDPAKWALLPAPPTGLLVDQDIIDLGDRHFEVLHLPGHSPGSIALYEQSTRTLFSGDVVYDADLLDSIPHANIGDYAASLERLRGLQVDVVHAGHEASFGRERLLAIIDTYLERWNKDIGG
complement(980258..981370)         extracellular solute-binding protein; H681_04500                                     N/A                 MESLRFASLVTTATGMLLIASNSVAADAVRTVNVYAWASYLAPETLARFEKQTGIKVKYDSFDSADVLEAKLMTGHTGYDVVQPGVAMLDRLIRAKALQPSGMQQYKTKEQYDPQLLAQLEKVDPGNLYAVPYAWGTTGLAYNKDAIEKRIPNAPLNSFDLLFKPEYTSKLKDCGIAIIDSPQEVMSIALHYLGKNPYSQNSADYIAAKQLLDKLRPNLRYIAFGKQSNDLANGDLCLALSYNGDAMTAKGQAVAANKPFAIGYQIPKEGTLAWIDNFAIPADAPHVEEAKEFIEFVTEAEGMAEMTNTLYYANANRASLDKVNPVLRNDETLFPSAESRKTLFGEEPLPARTLRERTRTWASFRTNVGN
981479..982393                     PHAGE_Burkho_phi1026b_NC_005284: gp58; H681_04505; phage(gi38707948)                 1.95e-16            MHIPALNNLRVFESVARLGHVGAAAAELHITPGAVSQQLKSLQSALGVELFSRQGRNIVLTQAGLALHRSVAKGMHEINDGLNQIISQSQQAIPTTTLTISTEPVFGSSWLIPSLLGFKEAYPHIRLRIIAANHVTEVDWKRANVALLYAAPPWEGLWWRPLRTLHMFPVCSPQLLRGPNALSNPYDLVHHRLLHEDDGTLWRRWLLEARVPYPGESDLHIESFSMALQAARDGYGVALSDEFNSRRDLDQGLLVRPFNLEVPAGLGYYCLCPEEQRHITGVVQFVDWLIAQTALDVQQLSGRS
982480..983100                     PHAGE_Bacill_phIS3501_NC_019502: site-specific phage integrase; H681_04510; phage(gi422934319)     3.86e-16            MNTTATFSHQPWNKGKLVGQKAPLRLSDIWAIRVRLQIAERTRDLALFDLAIDSKLRACDLTKLRVRDIAHGEHVSPRAIVMQQKTQRPVQFEITEQTRAALAVWIHQAQLRSEDCLFPSRLRGSDHLSTRQYARIVKSWVTAIGLDPAMYGTHTLRRTKASLIYRRTKNLRAVQLLLGHTKLESTIRYLGIEVDDALEMAEQTEV
complement(983201..983788)         isochorismatase hydrolase; H681_04515                                                N/A                 MAFQRFDAANSALLLIDHQVGTMGWVKSIPFEEMKRNALMLAKTARILKMPVVLTSSMEEYAQGPLLAELESILPAEFAARIKRVGIVNAMDDENFAAAVRATGRRKIIIAGVTNDVCTVFPALSLVGDGYEVQVIADAGGSPSAIGDDMALRRMEKAGVTLSSTNQVIAELAGSWSTPEGGEIVQQVVMPALQG
complement(983804..984541)         pirin; H681_04520                                                                    N/A                 MTTLATLQRASKGNYFRVYALRGQEQLLDPFLGIDHAWMSAPTFAPHPHAGFSAVSYVFLDSETGIENKDSLGNHNLIQPGGLHWAAAGSGIVHEEIPAEPDMTVHSLQIFVALPPEHRDGPPFALSLEPQDIPVVRLPGAKVRVAAGRFGQAASPLRPPTEVTLLDVSLDDGAALTVPLAAGHVVIVMPIHGALSVDGQLFERDSIKLPVFQPDSSERVLLLQAPQGAAKAMIFAGVPLYPSAT
complement(984552..985625)         12-oxophytodienoate reductase; H681_04525                                            N/A                 MQQLFTPIHVGRYSLRNRLVMAPMTRSRAQADGTPGELAVEYYAQRAGLGLIVSEGTQPSDDGQGYLTTPGIYTDAHVAGWRKVTEQVHAKGGHLFIQLMHAGRMSHPDNTPHHRQGVAPSAIAPNTQMFTPTGMQDIPAPRALSREEIRQTVVDFRFAARRAIEAGADGVEIHAANAYLIQQFFAPSANTRTDEYGGSIENRARFAIEVASAIAEEIGADRTAIRLSPGTTLWGIDEGAEGPDLYRYLVAELDKLSLAYLHVMQQGDEPLLADIRKLWRHTLILNRPGRPREEIGADLSAGLADLEAYGQMVLANPDFVERLYHAAPLNEANRAAYFGGDAQGYIDYPALYGAAAN
985742..986620                     LysR family transcriptional regulator; H681_04530                                    N/A                 MELLNDMALFVEVVKAKGFRGASEATGVPNSTLSRRISTLEKAIGLRLLHRTTRKVEVTEAGQLYFERCKRIVDEARLAHEQLGEMLAQPSGVLRASLPVDFAVTYLAPLIAEFADLYPGITFDFDLTPRRVDLVSEPFDVAIRMGEPENSQLIARLLASLTPNLYASPGYLQREGEPSSPADLEAHQCLGILKTGAWTLLDGLQTVSVSVGGRYQLNSVGMIRRLATLNQGIVLMPEEIVADELENGRLRRIMPNWRGLPMPVYAITETRLLPAKTQRFIEFLRERLASRG
987014..987307                     hypothetical protein; H681_04535                                                     N/A                 MALSASRKVGGGLIAVNKEASMQLQYAFMLKQILPLILHARDESAELELETGVRLPTGPNNIDILVIGRSGRLSHPRAEGASVGCMRLSHRAKFCPI
complement(987323..987727)         hypothetical protein; H681_04540                                                     N/A                 MGHLTPKDEKRIIKLIEEWSEPKLTWPLLVEACKEKLGISRARQSLMKLPAVDLAMKNCKAALKAQKLKPGWISDIQAANEHIEKLTATNQKLLAAVRDMHSRFLIWQANADMHGLTQSMLERPVSQLQKKLSP
complement(987730..989967)         hypothetical protein; H681_04545                                                     N/A                 MTDAFHSESTNNNIVDFKPRSQLAAEAQLAAFIEWAKQTLPKGIPNRVHASIRWEDGSWHLHGFQSCSFSALGSTSVAPVAMQAPFTDFAKAILVYRKVFSQKKATSGWLNALKGLEAALFELTGTRDVTRVSAAVCNTACEHMNRHWTKGNTAYGFSKALEVIITLMRNKKLLRSDFRWTSPLTLRPSGTLKQQKQDREQKLPSPDAIRALGEVFTNELTRPLDIVVTSACALLLSAPSRVGELADIELDCLVFKEDSQGNRRMFLRWYAEKINQVMLKPVVKPEMEPVVERVITLLKPITDEARAYAAWLEDHPDEFPPHEGLPSKGPDEPLTFAEACAALKLAYKEGGARSCFNDNLLKSLEKRKALSPAARTLLAEIRDGWDSSVGKRIYVKGKHGVQGYEFDDRCVITLHKLNVLLRMKYLPKDFPYTTPYTEGKARVKYRDALFTVRTGALAEDSGTAHATLGFGVEIAANSGRLTGQLGGSKNPALKSLFERFGYPGVKVNTHAFRHELNTRMHQAGLSQLLIDAFSGRTTMGSVYNHETIEDRTQRVADYHPKTKHSNAAQLMEKVKTNQPLNLADLMELRKGEQDRIIHQTHIGVCLHNFASEPCPKMGACLDCGRLGCVKGDDVKLGNLREERDNLKRRLDKALDAQSRGVFGASESAKKLGEKLFKCEALIQTLENPELENGAIVWNADNGWTLTKNAAAMSGLIEVRFIEENQAQEALPSLDDVLALLDEIEG
complement(989964..991550)         site-specific recombinase, phage integrase family protein; H681_04550                N/A                 MSIAVEALQAPTKDSLDAWLNTPRLAKCGNVFTPAEPMWKPDKSACHSVNWEAAIAGVSPDWQPWLHAALAYRMADQAAMSVSKLASVLSRAAQAGLDPLNEGQLIDLRERFNLGEFSCTATFMAFWHDCESLEQRPSQSLINAYQTLPRNKRSSNDVILSLDPEKGPLTQVEQDALHQWIHEQFGHGQLEFEEYLYLRILMIYGQRGSQMRMMVFGDFTKSDQGCKVKFHWAKRKDNEAGWRAKAETFSLDEDLYNTVKAYKAMVLAQLWQTYPDGADWNAAIENVPLFRRKLDDEAEHWGARNAPVLLDSPLQKGLEDAPQPIFHAGSGTIKCWLERIERRRDFPISPRTHQPLKVTRGHRFKHTLGTDLSNAGLDEWTMARALMHNDTRTVRKYRAVSPELLALIDAKMSDHMALVVNAFTGIIVTDRTSAINGDRADRLIEDVAVCGATATCHLDAPYTCYACGKFQPLLHANHREVLERLERRREQTIATDKTTGVLWDRAILACRKVILDCEAMLRSGRNSE
complement(991547..992812)         phage integrase family site specific recombinase; H681_04555                         N/A                 MGFQVTEQVVNAARRKLLVQDYIPIYYPNLYITMEHSGRALETTKKYLEHLAVFEEFLAFSSIDLISHLEQRPHSQYLTDSELSRFVSDAGFSKETLAMKYAGMHLHPTAYKSVGKVHAQQRIEAVRDYLAFLYDKLGDHSTRYEAVDDLKKRINRKIKAASPAWKKTRTDEMKGLTSPERTRLLEIMHPDSSENPFSDEAIRLRNYIILLLGLDMGLRRSEMLLIKTSDIHWHSRQLAVVNLEDESLDPRTMAPQFKTHERMLVMTDDLYDAITEYESKYRHRKPRNGASQARRHPFLLVAHKRNEGGPLTIKAVDGVLSRVREIAPELAHVHPHILRHDAVYTMLESMREELAVLTPEDRTTQVQKTLTWMFGWSPDSNMPGHYGAKFWKEEADKAIQKRAERFTFSRQKAGTTQRGSE
997890..997901                     attR                                                                                 N/A                 CAGTTTCAGTTG

#### region 2 ####
complement(4627049..4627444)       PHAGE_Rhodoc_E3_NC_021347: putative DNA-binding helix-turn-helix protein; H681_20680; phage(gi509142230)     3.12e-17            MTTNGMRPIHPGEILREEFLQELDITPAALARALNVSAPTVNDIVRERRGITADMAIRLGRYFDTSAQFWMNLQSEYALATAYAASGEQIEHDIKPLVVLATIEAQDDAFLVQRVKERANEPSREIPLGDL
4627376..4627387                   attL                                                                                 N/A                 CAGCTCCTGCAG
complement(4627457..4627735)       plasmid maintenance system killer protein; H681_20685                                N/A                 MILSFRCEETRSLFETGTSKRWSAILNVATRKLLMLHAATELRDMRSPPGNRLEPLQGNRAGQHSIRINDQWRICFVWTDAGPTQVEIVDYH
complement(4627751..4628779)       PHAGE_Erwini_ENT90_NC_019932: phage integrase family protein; H681_20690; phage(gi431810942)     3.71e-94            MTARKEGKTWTADFYENGRSGRRVRKYGFPTKSAAIRYEQDFFAVKGETGRPLDDRLTDLVKVWYDLHGCTLKDGKQRLARCEALAQRLGDPLAFEFDSLAWARYRQRRLTEVKPETVNHEQRYLSAIFSELIRLGSWHKANPLANVRQIKTDQVELTFLTLDQVAQLLEECKASTNNHTYPVALLCLATGARWDEAESIARGAVHGGKVHYHRTKNRQSRSVPIPAELEQLMFKVGMPGTGRLFMSCRAAFRCAYERCGFQTPGQLTHILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLESAMRFSPLTQSGYQLTPARPLVSSDHVNA
complement(4628776..4630068)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; H681_20695; phage(gi9625374)       0.0                 MKKPIHPLRLILKENGDFYESSEGRIFMDPSNGRFVDLSGVRLLRCGVDTVRQLYNGMIRPEVMALFDEPEDIVNFAGYKWAKGRIGRDSGYQYRLQNADMGLILLIKNHNVKLENIGPHLKIEVSPHALDGADPKILQGVLDDLAAGVLSACEVNQCAVHIALDVQGWTPPADFVDRMHCRSRRVRQISGIDRIEFDGNASVYGRGETFMFGSANGLQMCLYNKTLQARATDKLDYWESVWASLNGDPFGDGEPAFNPLETVWRIEFRFHHSIVQQFSEGSTMTSGEVIGCRTYEGLCPHLQGLWQYACDNYKLISREGIFDAFWSLISLDTKVQVEADPLIERTEYRRYYKTAQGFSGKNCEMFLGQFASLIARERIPPKKALEVGRTLPFWHVIEDHYTAKGYSTRDLEKHVIGLINDRYIRRGYAI
complement(4630215..4631429)       PHAGE_Ralsto_PE226_NC_015297: putative phage assembly protein; H681_20700; phage(gi327198635)     5.86e-41            MLYIRTGKPGHGKTLNTIREVDQKAHREGRVVYYHNVADLKTDQLQAAWFGFDDPYKWYELPPDAIIVVDEAQGWFGVRDPRQKPPEHISRFEIMRHQGHEVHLVTQDPRYIDVHLRRLCNGHIHYWRVFKSQQLLRFESEAVIEAVEKKTSFKDADKTTLKLDKKYFGVYTSTKANHHFAFKPPKKMILALAVIIGAAFMVYRAYERYAEGSKSATPASAATGATTPNGADKGVVDQVSSAVGALIKPTGDGETKVVTPAQYLERRKPRVPDLPSSAPVYDELTKPVAHPRLYCLSTGDPRLVARRPQHTVKDGKSCQCYTQQGTKVATAFDFCLTVARDGYFDPTLPDRNGLDPRSGQQSAVAASPLPPPTSERLQADAQPAATQLTIVPDSEYPARPWRSN
complement(4631442..4631768)       PHAGE_Ralsto_PE226_NC_015297: putative minor coat protein; H681_20705; phage(gi327198634)     4.91e-07            MQFLFLVQLLIMIVGPLVKMVLRALGVGFVTYVGSNLLLDMVRSYVQSKMGSVGLAIQQILGLANFDVCINMFLAAVVTRMVLSGMDKASGRQRKRVWNPPGRDYIDA
complement(4631768..4633228)       PHAGE_Ralsto_PE226_NC_015297: putative minor coat protein; H681_20710; phage(gi327198633)     3.11e-07            MRALVLFLLALTMSTAQAEDYYWQYYGYNITKSPSPAGACQLMLDYWNRSDSLYVDTMLSVSVSGSSGTCYYQTLTKSTGKTADHSGQLVRYGNGCTAPQLYDATAGECKAPEPDKCEPTIGQMVEHQHKIGTLSEGGVVLQNTRTEPPGSLCQGSCQYASTGEAPSRCYRFMEGDDQNSGFCVFRYRGNGVACPNTDPTPNVPPATLPTREKSNECTNKVTDAEGRTHYSCLATDAFKEPGNMQCGEVNGQFGCTEGKPSPSKKETETKTEVSEQTASDGSSTTSTTTTTTTTNCSGVNACSSTTSVTNGTSKTNADGTSGGESSTCTGTGCKASDKPGEEDKEEEEEPERKASGTDDCDAPLQCAGDAIDCAMVQQQKKLRCEVEKQGDFEKHKGEIEAAVQGDKFQLAEDLEVEAPSFLNSGTRFLPASCPPNKTFSLRTNGGRTFAFTYEPLCAAASDLGVLILIGTSVFCALYVGRAFGGE
complement(4633372..4633614)       hypothetical protein; H681_20715                                                     N/A                 MKQLKTQLQNRAAGYGRRARQTVVGIAAVGSTLAATAYGAVPTEATAALTTAGEDTNTIGWAVFAVLVAAAAFKYMRRAL
complement(4633629..4633841)       hypothetical protein; H681_20720                                                     N/A                 MNFLACDGNWALGADGSAICTGTLTVFTREEMQSEFGSALTWDQVAELRGDVLALFCIAFGFLVLKRLLK
complement(4633940..4634377)       PHAGE_Pseudo_Pf1_NC_001331: ssDNA binding protein; H681_20725; phage(gi9625367)      4.43e-71            MNMFATTGGVVELWVTKTDTYTSTKSGEIFASVQAISPIPETARGNAKGFEISEYNVEPTLLDSIVFEGAPVLCKFASVVRPTQDRFGRTTNTQVLTELLAVGKEASAPTPTARPAAQPQAQRPTQQPTTDKPTAADKPGDSAKS
complement(4634747..4634953)       hypothetical protein; H681_20730                                                     N/A                 MITNPIPHLIFWSVLIVFALLVGRYHARHTIPTWANQVQGRRTGLSEHALSFGQTERRAKRTLDRPPP
complement(4635436..4635606)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; H681_20735; phage(gi9625376)       1.39e-31            MLGLEEITEDVVRGWVETKTVPTAKIGRRRVINLHKIRRDLDRGKSIFCQGDYDDE
4643628..4643639                   attR                                                                                 N/A                 CAGCTCCTGCAG
