gi|521377829|ref|CP005485.1|  Lactobacillus rhamnosus LOCK908, complete genome. [asmbl_id: NC_000000].2990900, gc%: 46.76%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
837328..837344                     attL                                                                                 N/A                 CCCTTACTCTCCGTTTT
complement(837462..838589)         PHAGE_Lactob_PL_1_NC_022757: integrase; LOCK908_0851; phage(gi557308015)             5e-60               MASISKRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAATEVERQHNRGANLDLNKITLIDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQGFINEFGKKRAKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQVKDLRKLVNYCLEFADYEHIAYYIIATGALTGARYSEVLGLTWDHVDLKKHVVHITRTWDHRYGSGFAATKNKSSVRDIDITRELADLLLRLKKEQQEVYVAQGYRDSKQLLFRSIRHNMLSSTAINKDLRTIEKALDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTMITQKVYAHLLEDQRKEQVSQTLQALSRL
839099..839320                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0852; phage(gi557308017)     8e-23               MENGIYIVDEKDEVWDIDEASGMYGMFSSKPNIGPNEVAALLSGKALVDLSDGEYIHWIQLTPDAIKTARLRQ
complement(839603..840712)         Type I restriction-modification system, specificity subunit S; LOCK908_0853          N/A                 MTTNKQMVPELRFKGFTDAWEQRKVSELADRYDNLRVPITASERVAGETPYYGANGIQDYVEGFTHNGEFVLVAEDGANDLQNYPVQYVDGKVWVNNHAHVLQAKEERVDNKFLTNALKHTNIEPYLVGGGRAKLNADVMMKINFKVPTLPEQVQIGKFFDNLDHLITLHQRKLEKLQELKKGYLQKLFPKNGSKFPQLRFAGFTDAWEKRPIKKIATVNGGKDYKHLNKGDIPVYGTGGYMLSVDQALSEENGIGIGRKGTINSPYILRAPYWTVDTLFYVIPKGTQDLNFLYAIFQRVNWKKYDESTGVPSLSKQTINAVEVTTPTQAEQELIGTMFKQLDNLIAVNQRKVELLKKLKQAYLQKMFV
complement(840803..841021)         PHAGE_Brocho_BL3_NC_015254: gp32; LOCK908_0854; phage(gi327409424)                   5e-05               MFDNASKKATQYLNKQGLGDLGVGRVADEGVTFKQLSRDYQQKKIVLHSLNDKYPDRCLDPEDISIIGVVIN
841889..842155                     PHAGE_Staphy_phiRS7_NC_022914: transcription regulator; LOCK908_0855; phage(gi560185989)     4e-06               MTGIEPAFTLEGARNNLHFSQKEVAEALGMSTKTYADYEKYRKVLRTDKAFEFAKLVKLPFDSIIFLPKDYETFVVGKKYLLTKGETV
842152..842415                     PHAGE_Lactob_phiAT3_NC_005893: putative antirepressor protein; LOCK908_0856; phage(gi48697283)     9e-33               MNELQLFQFEDNQIRTVSSNGIIWFSAPDITNALKLTNTTVALKSLDGDEVTKFNLGGLSGETNLATEKGVTKLMTPGGKQDFVTVS
842517..843257                     PHAGE_Lactob_Lrm1_NC_011104: antirepressor; LOCK908_0857; phage(gi195661228)         5e-111              MNELIIMHDRQAVTTSLKVAESFGKNHRDVLAAIRDLMSSAENYAVLKKYFIDGSYTASNGKTNPMYYMNRDGFTLLAVGFTGKRALQFKIQYIQAFNSMETQIRTGYAIPGSYAEALKLAANQAEKIEQQKQTIAIQAPKALFADAVATSHTSILIGDLAKLIRQNGVDIGQNRLFAWLRDHGYLISKGDRRNMPTQRAMDLELFDIKERTFQNPDGSVRITKTTKVTGKGQQYFINKFLQKEAV
843258..843518                     Hypothetical protein; LOCK908_0858                                                   N/A                 MKAEQEKQSLSQVCLNLKILKAEKLASYCEKLIEQHKKGTYDDAISDLEKQRRDHRYLNGFSDDDQVFQQAIDRIIKVALSQRIAN
complement(843511..843816)         Hypothetical protein; LOCK908_0859                                                   N/A                 MKNATLLFADGSRLELHEGEKLSGVSFSENATHPRNKDQEYEKLIYPELALEGVVLKLWSHPEVGLAESVFEVLHNYEWFRPYHESGHYYHSSAVISATFS
843891..844247                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0860; phage(gi557308020)     3e-45               MELLQIVENKQISSKKYLAVDAEEQAKLIKENQELKRQLEGMEYWDLTTAASLIKGHNNTWVVNNILDVPRFRKVLEDRIVHYPPPGQKGYMFHAGPWRTFIDKWFPEISSSLREKGK
844332..844535                     Hypothetical protein; LOCK908_0861                                                   N/A                 MNEEAIAKLVPLISYLYTQAENARLVGHNYRQGTDQTRAYAMGREDGLQTAISLINEIIGKTKTAKR
844748..844924                     hypothetical protein; LOCK908_0862                                                   N/A                 MTDGEKIQNRLFLKDNFKKYMDILGQTSLDMIKFEADLMDVRQNIADQCFHEGGDDHE
844917..845753                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0863; phage(gi557308027)     5e-116              MNETPNYYAIIPANVRYNNSIQQGAKLLYGEITALSNKTGCCWAGDQYFMGLYKVSQATIQRWLTSLEKNGYIDRTVKYKDGSKEIEKRYIRINAYPILKNENTYTQKCEYPILKNEQENNTSINNINTRANSTLESDFEKLWKLYPKKIGKKPALAAYKRAMSRKKNPATNRQIQDGIVAYRQLIKSKGTEKRFVKDGSTFFNQEAWNDYLEVVKEEREEQEARKPKFDPKKTAIAMYIDYNSLDRVLEEIKAQGIPIKPEDAKRYIAEYDERRQQA
845750..847012                     PHAGE_Lactob_PL_1_NC_022757: helicase; LOCK908_0864; phage(gi557308028)              0.0                 MTKKLYDPSNPEPHVMYGLYTKPELIKSEWIDPKWFNSQQYAAVVAYMNKLPGDVDTLELQDGFDTAHPGVMSAADWQYIMTSDFGTSRFDWWVGKLKRDYFRSQLIKAAQAYSEEPSEDNLTAMMVASQNATAASQTVTESTIADLAADMEDKMIHGAADNGIKTYFTLNNILGGGLMPGRLLTIGARPGVGKSAFAVNLIIEALKQQPELTIDMFSLEMSNAENYNRLLACKTGISAGKFINPQKSLSDAEKVEVEKAGNVLKDYRLQLYDKQVELPQIVKTMRQRAAEAEKGYLAIVDYLGLIGVRGQPDRRLQIEEITRQFKVLTNELNIPIVLLSQLSRGVENRQDKQPVLSDLRESGSIEQDSNAIGFLWNSDRQDEKSDIRTVTLTIAKNREGALGSIDFRFFAPKLQFKVAY
847014..847358                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0865; phage(gi557308029)     1e-57               MSYPTMTLKEFNEYMQEGHYQYSLFVILQLDEAVEYFKKAKQADAGMKKFWNQWAYVTLVDALETAESEYFGETSAYLPTKETDPVTRVYCQNTYDIWRGYLQKLNVSLPEQKF
847371..847658                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0866; phage(gi557308030)     2e-44               MIEHENETNNAGQYWARERLRNFLDDHPSLPIYRFALIAGVSRITISSFLSGREVMMITLTKIAKAMGISLEKLKQPISEEEYKELLEESSNASN
847645..847899                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0867; phage(gi557308031)     4e-39               MQAIKTKMMVGDLVMVPDRVFMGVRDLGGVARIIRIERYNARGARQDINKPVAFDNNAPKELIATVEMVDGKQRQYYLKDVKPA
847965..848261                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0868; phage(gi557308032)     5e-55               MFGGAKVKKQATETVMLAVRKAMNQGVKFQWGKPLSFDWYWYDKRTDPDNIAFQHKFIFDGMQKAEFLENDNWDHIVELRDRFFIDKANPRVEVEEID
848274..848738                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0869; phage(gi557308033)     8e-21               MNKKLTFTVTVLAGLMFGAGATTIADNVWQGHQNIVETKNNIDKLTAKIHASKSSLSDLQHQLSDAQAQYASLKQQYDNDMASKDAEIQQKIIEGQRAVAQKQAEVDAKQQTINDLTSQLEAAKQANNDLSQAIKDAQSIKDYSDQAVKSVNAK
848932..849438                     PHAGE_Lactob_A2_NC_004112: hypothetical protein A2p44; LOCK908_0870; phage(gi22296563)     1e-59               MSEEKIYLIKNDHGEYLTVERTAPWWNSPVGTAVRNIDVALAWAEKYGGHVVTFVEEPKKVVLTKEQAEIVERAHSGKFPAASIAFYGDDDEEPLMNAYVNGYTVAKEKKYNVKVPHTKEVWYYKSGDTDLLTICPADKELRGKFTEAEIEHYGLQYCEKEEVTDDDE
849428..849604                     Hypothetical protein; LOCK908_0871                                                   N/A                 MTNKADIDAAQKAIDAANNAINKLDLCGLYDCAWQAHDGYQRIIDYNKEQLEVTDDEQ
849594..849911                     PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein lb338_phage_175; LOCK908_0872; phage(gi226377805)     5e-21               MSNETKQDVFNALMADMSHGSEQWRARYDAAFPDNLPVIPKAVGDVIVKLKHKKFSLSGTMSYAAVVSLSPWMTFEHEDTFALAWVLGVWRVEETGEIVKLEEEK
849908..850117                     PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; LOCK908_0873; phage(gi78000016)     4e-32               MSKHYEEMSQLDRTDKKMKFKIVGRNGETKIKEFRSQYEADLYCERLNYERLERLGLIEHLNMTAIKFD
851425..852090                     Hypothetical protein; LOCK908_0874                                                   N/A                 MKLPLYERIGDFVLGIFHVMKTKWDKIIPIIISIVSVAISLNTWNSYRTANEEYMQRSNQALVNSSKLAETDIDILTGKVAESDHIAVTKNQIDYQIYSLKQNLKVIEDIQITRLPQRNSMNYQVYRKDLADVIYRLNAKVTELFENKKYKQSFYLTAGDREDFMNSLAVVRRVLLDDRNALQKRNDLATKYLKFNQKFQEKNGKDLNERVSGDLNVYGGK
852733..853950                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0875; phage(gi557308044)     0.0                 MQWTDEQIGDIRKLASEGFTRRETADKLGISYDALQGKARRLGIEFQKPAKNEYDSAKTDRNSKPVDRKVALNADGSQTVTALMRLKHEPNKDPRTLMELCGYDPDKFEMVLGDYKVYEQHSTEDGTVPQYSIHIRVKPKQGLSINEMAEAFNDKIIPVNYGMKKSGDRNLVIPLPDLHFGWTTFADLKDMVSQLREIIMDGYNEIVIEQLGDLFHSDQIHATQTVRGTQLDHANMRQAFHDAVKLFDQIIPLAIEYSNRVSIKSVFGNHSGDLEYAFLYALIDRYPQVHVDLNDSNPATDWRCAYLLGHVGIMLAHGDVAKDKLTGLFPFEYKKIFNMAKTYELHSGHYHSERFKDDRGIMWRQLGTAKPNDPYEIKNGFTTGKHLLYAFVYDDERLRCTYELN
853937..854467                     PHAGE_Lactob_PL_1_NC_022757: HNH endonuclease; LOCK908_0876; phage(gi557308045)      2e-99               MNSTEVWKDIEDYKGLYQVSNLGRVRSLDRVDMRGNHLKGKVLAYNLAGAGYLQVGLHRDGKVEQKLVHRLVSEAFLPNPDNLPEVNHKDEDKTNNNVSNLEWCTRLYNMTYGTLVERMAKANGSPVYVITSSGHRYYFDSIKKASRLLGLKDTGVHACLCGRQKHHHGYTFELAV
854630..854794                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0877; phage(gi557308046)     4e-19               MPVQTITADADDYERFRKLGYRSMPVVTIYKADGTHDEWCDLRVDKIKQYTEMI
854798..854944                     Hypothetical protein; LOCK908_0878                                                   N/A                 MQFPITAHTNIRAGQAIRLDRMDLAASIRATNSDDCFTGVVYLIWDHH
854997..855791                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0879; phage(gi557308049)     4e-150              MPSKKLAFINGRPQLVDANARVRSEADRQYNRVRNEQQSDYLRFYHSNEWKQLREQILIRDNSLCQRCGLQASLVDHIVPSEDDWEDRTNADNLQALCRDCHYWKTRRETTKRKKGQHRAMKITVIVGYPASGKSTYVKRHQGQHDLVYDYYHLMTALTGLPLHQGNIDANDYVQLIYELILRKLKAEQTFDHVWLVMTYPDDKLDTLLASRDVEHILIDTDRDTCMQRLSKQGRDVSQLIKAMNKLDEMKSENKFAKFKKIKN
855992..856447                     PHAGE_Lactob_PL_1_NC_022757: terminase small subunit; LOCK908_0880; phage(gi557307994)     7e-81               MAGKYKVLQMSKGDLTKERQEAKLHAELMAKDGIPKLQVTPPNHLDPVAKQEYKRIIESLGTLPLRNLDRAELENYCTWYSVYKNTSVNMKLALKNGDQDEYYAYISTLNKATANIKSLASDLGLNVNSRMQMSMPKTEAQKNDSIIDTFG
856469..858181                     PHAGE_Lactob_PL_1_NC_022757: terminase large subunit; LOCK908_0881; phage(gi557307995)     0.0                 MSKFKDPMPNFIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWRYDPNLAGKAVKFMEILPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDIVHDQITDYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKDAELSEKPDIRGKRAWIGIDVGRTSDLFAITWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHSEGEISSLESGIIDNDRVYEWLEDFIERNDLDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYAIAFKEDLDNYLDDERVFSDDFGF
858193..858384                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0882; phage(gi557307996)     9e-30               MNGKLANFFRILGANMAGIATVLGFILAGYGAFLINRPTGFMVCGGLLFVLAFILLLPDNEGR
858389..859642                     PHAGE_Lactob_PL_1_NC_022757: portal protein; LOCK908_0883; phage(gi557307997)        0.0                 MKLFRGLATEADPHWADNLLDSGVIPSFRGAYLGISALRNSDVLTAVSIVAGDVSRFPLVITDSSTDEVIDLSDIDYLMNTKVNKRLSAYQWKFSMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPENLVYRFTPYNASVQKVCSFEDVIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDNQRHQYRIGFDTKSVNGLPIADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHASQLKGGDANDKGAANDSDTHANS
859614..860225                     PHAGE_Lactob_PL_1_NC_022757: capsid maturation protease; LOCK908_0884; phage(gi557307998)     1e-94               MTATPMQIRDGDEKHPTVIEGYALKFDRKSEIMGGGEFSFREHIDRHALDNADMSNVVALFNHDQNQVLGRTGVNLELTIDDTGLKYTLTPPDTQLGRDLLENVRQGIISQSSFAFTIAPDKDAQKWQKSSERGVKYERTINNIDHLFDVSPVTTPAYPDTEVKVGARSLEQIKALDQPPEWELKRRKMLYQLNKEELLKGIE
860267..861469                     PHAGE_Lactob_PL_1_NC_022757: major capsid S; LOCK908_0885; phage(gi557307999)        0.0                 MTLDEKLAAVKKQLDEKRSALPAMKTELRSLLEGEDSEENLKKAEGVRAKYDKAGKEIKDLEEKRDLYEAALKGNEQPSGKKPNHPEEHSYRDALNAYLHTRGRNTDGVNFEKTEAGEFAIFRADPTDASDAVNAGVKAADAAVTIPETISNTPQRELQTVVDLKPFTNVFQASTQKGTYPTVANATTKMATVAELEKNPAMAKPDFKSIDWSVETYRQALPVSQESIDDSAIDLVGLIAQNAQQIKVNTTNSAVATLLKGFTAKTISSIDDLKHINNVDLDPAYSRAIIASQSFYNFLDTVKDGNGRYLLQDSILTPSGKSVLGMPIVVVSDDTLGAAGEAHAFLGDIKRAILFANRADFMVRWTDDQIHGQYLQAGMRFGVSVADEKAGYFLTYTPKA
861487..861726                     PHAGE_Lactob_PL_1_NC_022757: major capsid L; LOCK908_0886; phage(gi557308050)        9e-36               MSQKTFTGGVGATKDITVTVTPDGAPQAVEAVSSDESVATVVKKSDGIYTITNLAAGTATITFSTNGISSTLAVTVNAG
861737..862096                     PHAGE_Lactob_PL_1_NC_022757: head tail joining protein; LOCK908_0887; phage(gi557308000)     2e-61               MADTTLDKSPLTDEQFQVLKMYLKVDQTIEDPMIMQLVHDACGEISSAISFGSKPEQFLSNPETRDRFFTALMKQVKEDYDYRGMGAEVMRFPLQTSTTNIINQLRSELPEEDGDPDAN
862086..862415                     PHAGE_Lactob_PL_1_NC_022757: head tail joining protein; LOCK908_0888; phage(gi557308001)     3e-55               MRTNRMTERIAFVSYESKKVNGVPVDGVLVKHMTVWAEVPKVPIREANDPQTKLGTRKDSPTFLVRFLTAEEIQPTWRIQWRGNEYQITGLDPDYERRDLTTITAKAVS
862415..862801                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0889; phage(gi557308002)     3e-67               MGVKVTGDAELLANLNKLQFGVAKEARAAVRDGAQKFADKLKSNTPEWDGETDMSGHLRDDIKLSSVRETSGVTEVDVGYGKNTGWRAHFPNSGTSMQDPQHFIEETQEVMRPVVIAAFLSHLKEGGM
863017..863187                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0890; phage(gi557308003)     1e-27               MDKTDWDQQEKIETQIYQALHAAGWERYYRNSYVDGDTPALRMTTGYFQFQGLPIG
863221..863835                     PHAGE_Lactob_PL_1_NC_022757: major tail protein; LOCK908_0891; phage(gi557308004)     2e-110              MADTAVTTNKKLAKFGASAFEYGVVGDDDFVPSTRKIQGLSSVKLDIKTEQKTLSADDGPYLILSGGITEATETIEMYDVDSQMKSDLFGINVVNGVEVYPKNLSPNYAATLFRTKLSNGKYVWVGMLKGMFSLPGVDTKTVDGTPDPSADSIEGSFIPRGDQDTGNVVLIGREDNDGFNFDTFHSYVFPKTAEDATITPATPA
863938..864351                     PHAGE_Lactob_PL_1_NC_022757: tail assembly chaperone; LOCK908_0892; phage(gi557308005)     1e-73               MAYQIKLNIKGETCVFTRNGEPTLRDTTNALKVQQQQLRMLNRKDGPSNDDYDENEKNLAKFAVDFWKNQFTTDDVIDGSSISLKSLDSINDAIGDSLSDGEEDKKDTAKKSPKRTSKKPLATLTTSTKQGSLKATD
864474..869366                     PHAGE_Lactob_PL_1_NC_022757: tape measure; LOCK908_0893; phage(gi557308006)          0.0                 MLGNLGQIAATVSLNIDPFQVSQRVLNSSIKATAAELRAQDAAFKGSEKSINNMRSTYDTLSRQSKNYQAQLQKQRERYDENSKAVERLNKSETASQEEINRATKLQANAASQYNRTAAAAAQNENRMAALRKEIALQSDGWTKVSNGASKFASVTEKTSSKLTSFGSTMTRAVTAPIAIGFVAAAKSAIDFNSQIQAMGPLLTNGGAITAKYRAQLDQLASASKKWSVEYGISTAAINDGMSEMIKRGYTAAQTLGAMPAVLNAAKASGDDFNDVMHVSTSVLEQFGLKTESTTGMLKNTSRVTDALTYIANATAAGFQDMGEAMTYVGPSAHAAGISLEETAAAIGIMSNKGIEGSVAGTALRGALTRLLKPSKQNIEGFSELGISVADFKKGTLTLPEILDKIKNNTKGWTDQQRASAVALAFGTEAQAGMNALISAGGGELRKYTSEAEHASGTTAKIANQLNNTDAAKLKRFQESIHVLGIEVGQKLLPTLTPLIKTATDVVNAFSKMDSGTQQTIIKFAAFAAVVGPVSSLIGGALKPVVALSKGISGIAGVIGRASAAAKIGGTAMDVLKSGFSKTAFEALKVAPAAAAVADGASGMGAAMGGAAASGTGLLAALGPIVPVVLGVTAVVGAGVAIWELWGKKALESADRTSRWGTDIGADADRSASKMKDASGEISGAFDDTNHTVTQNAKTISKGFNDLTKAAKEAADQSETAAKKLAKSLGGEAADNIEKQAAKEKAANAKRIKEMESNNKKAQAITASFNKSGAQMTADQYQLLDNYRRKNAALAVKTLQISGSQQNNVLKAVLGERTRMSKSAALEQYQDMWNAANKENSAYKSQQAKINEEFKNDATMRHVALEGLERDHQNKMKSLYAGAIQAMKAQGTSRSEMLAELQTDFHLTASQAESAMNSYENAMAKGVKSNRDFAAATEGFGKAAQQAGDHWNNLVFDTKTGKVKTNLPEVLKDTASTKKGWKQLVFDLKYAKITSNAKQMIVEALASSEQWQKLSVPEKNAIIRTQGREQLADIMDKFVSWNSLSLKDQQAIVKGDYTPLVNALVKSGDWNNLTLKQQEAIVKDKATVPLVSSLQQTGEWQKLDLKVQEAIVNAKGKKDLEDIIFDMGVWNKLPNTQKYATLVSFGKQDIADIIDQLNLWNTLTPKEIKAVAKGDTSSLIAAIDKANDWNRLTLGQLEAIVKDKASAGLVQAMIKAGEWNGLSIEEKTAIMQTKGKSDLADMVVKYGLWNSLPNSTKSLLMNDSDARTKLEKAGVAIDQYNLFKNPNEKGLKANNTDVLGKTEEAKGSIQKYNEVLPGLKLFPADASKVKHESSSGGTSIAKYNEVLPGLKLFPGDSSSVTNHAEKGKEEIGSFNATNPLMRFFQGNSGSVDGASKSGKSSITSFNSKVPIMMFFNGNADGVSSASQIGVNAVAAFGGNATITKTFRISADIDPAVQRLLNSGKFARGTQNFTGGLATINDASGTRYQEVVTLPNGAKFVAYGRNVTLPLPRHTKIETAMQSARNYSIPRFAGGTTDFGGAANRINQLNPQTFAARTPSTVNVSGITNNMTLSDQTIERLGKALASNVKPDNDRPIYLIVDGKVLGQVVGPMLNNANGKAIQLQTRGVTS
869366..870079                     PHAGE_Lactob_prophage_Lj928_NC_005354: hypothetical protein Ljo_1425c; LOCK908_0894; phage(gi41179329)     8e-19               MPFHDFTYLGKRPSDFGAYIHVVSHDIGFPSKIKTIVSVPFSNQSYDFSTIGGVQPYNERKVTYVINVVNKYGYDQVSMHELKTEIANWLYSSNSKAELYDDKLPDYHFLAELQEAADLKDDVRSGELTVVFTCYPFMIANKFEGDDDWDTFDFNNDVAQDVDFEINGSRSFELINNSVTIVTPQITTNAALTVRIGQIEYQLPQGTSQDIPLEVGTNTITVTGSGKISFAWHREVI
870081..871553                     PHAGE_Clostr_phi8074_B1_NC_019924: putative phage tail protein; LOCK908_0895; phage(gi431810378)     7e-19               MYQVTIINNDKSIVIMRPGGSRTMLTSAEIKTDINSIPSFTFSVLPNNPGYNEIMPMVTRVRVVRIDTGEVLFDGRVLVPTNEMAETGALARSYTCEGALAFFHDVVPGYQTFTGTPATIIKQLVDMFNSRVDPFKQMQLGIMPESTQSQTLETTPEKDLYDTLHDFVVTTLGYDIRVRSAQNGRFLDVKSQLGETGKTIIRLGINLKAMKVETDPTGIITRVVPLGAVKDNVSSEESVQPRVNLTDAGKSLYVDIPDLINKYGVLEGVQVFDNAKTPEQLQEAVNSWISGQRPVTRKFSVTALDLSLLRRAPEDFKVYNFNRVINPLTQTDETMRIVGQTLDLIQPQNAELVIGDKFKSGVDYAVDTVAKNLNNQRLYGQIQKTVLGQSARIELVNTNAQDALKAAQEAQQTVDKIQTEFSDADINGIKNSLTDISDKLNSITENIGAIGKDVDQLKKAQTTSTGATLATIEERVKKLEDAAKPAEGSK
871553..874666                     PHAGE_Bacill_G_NC_023719: gp353; LOCK908_0896; phage(gi593777809)                    4e-15               MVDKQEPYRDPEHIPYENSIREDINNGFVDNISESLATWIRSKQWGLDVRESLALAVEWFSKMKNETPRGTYPTFDDLKKAFPNGDGGKSIYAVLDSQRWYYYKNGAWQDGGVYQIPAIDAAKMDQIGQYLDNLSRNNLVPNAKFQNGLINNAVPSVAGVLLSVSHREGTTWVTVQSPSGTVNNQGVGIVVPRLNSIGQPVIGTGSYRLGVRIVSAVDQNLKITLIPRKANGDWLPSFDFGTFNAHAQKIMAVRNSAHIDVTGQEDNFLIMVWNTDGQPVSFSATDYSLVKEDEVSNNSDLESGYIEAANRDNVFRNSFFTEGTTPWQKGGTDVDFRNELYADKKWLHVWTGGHTGQSVSYLGADGTKLVNGVRNTGVRGSLIIKFNAASVIDIHAIFRDVNGAVLDDVIVNTVKSRDLAVPTKVNFFIPRIGRPDLSTVLITFKDHYSAAFDFNVTEIVGYPIAFEKPDRLSMNVVDDPTLKTGSAYFRTSNGGAYSPVMLLNHRWIKYSCPAASKQPTSRLEYLFNNEETTNDDFRTHNVLVECDVLVDTTGIYTVNATSYDLNNAKVRDYVITALPLTAGVINHIDFILPRFQPDEFNYGFGLCSTSTGDLSYSVSNINIRADVGIDNQGEHAFTSGTNLPVIKIDGTLPTQKGDKTTVTVRILKNGIAKNYFAKLSIQGDSSATYDKKNYKLKLYSDPDCTVKAKFKAAPSWLNEGTIVLKANWIDVTHALNIVSAKLFAEITENRANVNSNLLNASMLGEIQGTPALLYTNSSFHGLYTINTGKDENLFGFDNVPSNAGVLEAQNHFTDKGFGKPTIVITDDITANPDADMEVQVGTTTPEFQAATNRLAQFVSQSDDATFHDQFSQYLDLEAVIDFLIFYQVAECSDSYIKNIEYTTYDGNIWLPIPYDLDSTWGLNWDGKTIFDPEMDMLNTGLTSKNFANFKLNMLMNRTLKAFKPEIKARYTQLRTSVLTPDKVTSMFEEFMDSVGTNAYAKELSRWPNIPSTFFDFKTLRKNVITRFRISDYIFKNL
874808..875101                     PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein Lrm1_gp17; LOCK908_0897; phage(gi195661217)     2e-47               MTFFGYTIGDWAEVISIIGVGVSAGSWLFKKIALDPLRSDIQVLSETINRQLKLHEQSLADLGQHLRTHDDELGSHSVRITRLEDHVGIKGEDNHED
875091..875504                     PHAGE_Lactob_A2_NC_004112: holin; LOCK908_0898; phage(gi22296539)                    2e-62               MKINWKVRVLSVKFWLAVVPASLLVIQTVAAVFGYNWDFASLGKELTAVVNAVFALLTIVGVAVDPTTEGVSDSQQALAYPALITTKAAKIKALEDQIKALQADKEADQVTAASEVVPETSSAAPAESAPASFAPQQ
875803..876987                     PHAGE_Lactob_phiAT3_NC_005893: putative lysin protein; LOCK908_0899; phage(gi48697278)     0.0                 MKLKTKLITLVVAFLAAISFALPSQANAAKGDQGPDWSKYQGASGRYGTGQDKFIIAQIGGTYGGTYIDQWTYDSQIASAKAAGKRVHSYIWYGVGGSSQLGLEALDRYMPRIKAQTPKGSIVALDYEDGASGNMAANTDAILAGMRRIHSEGYTPMYYSYKPYTLAHVDYQRILKEFPNSLWIAAYRDYLPTTKPDYGYFPSMDGVAIWQYTSAFGLSQGLDGNIDLLGVTDNGYSKQPATPSVPVTPVPSQPAKSNAASDTDYAQAGVFKPSTTVNIRTGAGTGYASVGSYAPGESVIYDHVYIRGTYVWARYLSYSGRYRYVALGVNGGESYGSRSSGYTSLVSHTYYTVRYGDSFWSIARKYGISMYTLAANNGKSIYSLIYPGESLYIR
880317..880333                     attR                                                                                 N/A                 CCCTTACTCTCCGTTTT

#### region 2 ####
1046847..1046859                   attL                                                                                 N/A                 TGGAGGTGAGGAG
complement(1046929..1048077)       PHAGE_Lactob_prophage_Lj928_NC_005354: putative integrase; LOCK908_1078; phage(gi41179288)     1e-32               MAIKKVKLKSGAVRYRVTVNAGLVAGKRKNIVRNVQSMQKARLLESKLKLDVANGLYDEEDTTPPVHTFSDLYNQWWPIYVQTVEGSTAYKTKQLFHNHLIPMFGSKTLTAIKTGSIQSAVSQWRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVRSGKSPVYWDNKQVARFLTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKESIKGTKSTAGMRTIPLTPKVTIQLKKWIALLDTSKIISIRDDRPLFPSPQHFEKRLGINRPNKWLKDIIEANHLTPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIEKLADYMEQVTF
complement(1048185..1048844)       PHAGE_Lactoc_P335_sensu_lato_NC_004746: hypothetical protein P335p08; LOCK908_1079; phage(gi30089869)     8e-10               MLQNRLNVLIAQKGYSIKKVHDDTGLSRTTISNLVNNVGGGIQSVTLNRLCLYFGITPADFFDFVPFDLSYDAVADKLSALNIVSESDDPGGSFFNLIISADNGQLSVNKYYFRVGVFFFNKGLSDPQDYKVPYSAYVYVAGWSQDKHQEEALQFKRMYFDKMPAAFQEQFYTSCTQHIVEYVSLSLAPKRLIFEADSDYKMIVNLPYGRTVEASIIPK
1049013..1049282                   Hypothetical protein; LOCK908_1080                                                   N/A                 MKAELVLSEDFDKQLQDRIHQEVIQAVSKLAPQHDEPKKLNIGQAAVYAGVARNTLLSWTRKGLPMQVVGGVKRINTADIDDYMNNHGK
1049350..1049571                   hypothetical protein; LOCK908_1081                                                   N/A                 MNLFSKEEIALDHELGNLIDDIQLNVHGIAEDSTVTVDGKYIPNSELAVTTAKELLRVSEILKMYENEDDADD
1049682..1049873                   hypothetical protein; LOCK908_1082                                                   N/A                 MAQRVSTKFGWQWHDYVQADADCDRYWAAKKAEKRSLIEATKKSSRAATQGEKKTSEKIYIDF
1049918..1050193                   Hypothetical protein; LOCK908_1083                                                   N/A                 MIKNVSNSTKAPDLGMASYNLSTAKGLLEALSDEFDTMEGSVISYRNDRNEKNAAILAYGTNRSFYTWMALLRTIQEYVDSSLATIDEVNK
1050190..1050378                   hypothetical protein; LOCK908_1084                                                   N/A                 MMKEDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLMEGDAADGRRA
1050353..1051189                   PHAGE_Lactoc_bIL310_NC_002669: hypothetical protein bIL310p24; LOCK908_1085; phage(gi13095885)     2e-21               MLPMVDVLKVALGYQQHGFSVYPLAPETRTPLTGSHGYKDATKDPEQAKKWWGEHPNYNIGLGLDGVLVFDIDMGHKSEANGNESLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDLFSKNGEKTGLDYVATGVPVFPSIRENGMYQPLKGHKITKLAPAPKWLLDEIQRVSHPNLGFGGSTVYRGKRWTGKLLDEIVNGASTGNRNDFLTKIAGKMFFTGAEPQTVYNLLFTTNDNYLDTPLAEAEVNKIFKSVLKAEERRRAVG
1051182..1052606                   PHAGE_Staphy_StauST398_2_NC_021323: virulence-associated protein E; LOCK908_1086; phage(gi509139907)     7e-67               MVKTMPEDIKQEAKKVVNVDFTGQEQWRNDLKLDGNGGIRKDSVVNIQLLLENDPTFANVVAWDDFSEMLIKTKGVKGLPIRKGFWTDEDDAVVRSYMERKHNLLFSKQNEQDAMVVVGKEHSINPVKDWIEAEQWDGTPRAERYFIDYLGAEDSEYTRAVTRKWLAGAVKRVYQPGCKFELVPILEGKQGLGKSTAARNLFPKKFSDSLKSMGKTDEDYKKLQGNWIMELGELSAMKKTEIESAKSFISAQSDSYRGSYSHYVYPHLRKCVFIGSTNQQDYLKDATGERRFFPIRCGVTKPTKTVWRNEESVPKINHDIHQILAEVKTWVDAGESVFADDKLMQLAKPYQQEAETVDPMKEAIEDFLNMKVPSNWENLSLSLKASFFHTHIDHNGDVATWLQQHLDAGELQPLQQTTTREIMEVVFDKSVDRYLMGRTNSDAKRIKLIMDNMEGWQAQRLRVNGNRPHGYVRT
complement(1053432..1053545)       Hypothetical protein; LOCK908_1087                                                   N/A                 MLPTISCFDWLNMINKHSLTNNPTFQTASTSWIAQPE
1053793..1054263                   PHAGE_Staphy_JS01_NC_021773: putative terminase small subunit; LOCK908_1088; phage(gi526003597)     1e-18               MGAPLKSVTNLSAHLSKKQLADRVASEKALFTYKELQVQPPTWLDDYAVTEWHRIVPLLKKDIPVSELDAALIASHCQAYSDIQKAAELIQKQGMMVETTDSVKANPAVKMKLDATNQMMRIDEVLGLSVYSRAKLALKSETKKKPDDPFAELVSS
1054260..1055963                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; LOCK908_1089; phage(gi418489385)     1e-120              MNYATEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAVEFIELMPARDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLTADLGALYLLMENKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRAVPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGPMYKEYKFVSKVLTGREQADRYFIAIFEQDSKDEAFVPETWEKSNPLLANTERAKTMRPSLQADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKAIIEPPDTMGKDVYIGLDLSKSSDLTSISWLVPEDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDSGMIDYDEVLRFILDMIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIPTTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYTIAMDQNKESEVADNDFYSSDDFSF
1055929..1056108                   Hypothetical protein; LOCK908_1090                                                   N/A                 MTFIRAMTLVFNVQTVLLLLGLICMVVGIWWLFGFGVGMLAVGTTLISVAVIINFNKGR
1056113..1057297                   PHAGE_Staphy_StB20_NC_019915: portal HK97 family; LOCK908_1091; phage(gi431809767)     5e-61               MSFFTNSATQPRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIASDLATNPIEYSDKRISVLLNKAPNDHMTAWAFKFALAANMLLNGNSFARVTKNPSGQVTGFELVPNSQMVVKQDDTTGIISYEYTPDSGRSQRLNASEVLHFKCFTQDGYKGISPLYSLHDEVGVQKSGHALLKGFFNTGVQGTGILKVNKTQLDSKAKENIRNKFEAANSGDNALKTIILDNDMDYKQLEVNTDVLNLVNSSDWTTKQIAKAFGLPLDRLGIESEHSNAVQSNVMYLQNTLIQYFTCFTSEMDAKLSTGDNRYSFNTDKLFSADPATMQELAVKGLQGGVLTTNEARAKLNLPPITGGDEIMASLNYTPLSNLTNYQNTRQRSDPENESR
1057284..1058828                   PHAGE_Entero_EFRM31_NC_015270: major capsid protein; LOCK908_1092; phage(gi327198115)     2e-44               MNQDDVEKRLNPNAGLTAKADDSKGQDDPDTQQQKDTTSSPKKLSGYAVVFNSPSKDLGGFKEVVDPHAFDDVDLSDVYMVSNHDFSQVLASTKAGTLTLNVDDKGLQFEATLPDTTTANDAYNNVQAGNLSAMSFTFNAAPDGDTFTKDDSGQVIRTIKQVKSLFDVSLVAIPAYDDTNVQVDKRSYTEWLKTNTEQPEKGDKTMTEKTIIDNKEHTESRAYEDYIRSMGEQRDGITTTTAGAVVPKEVINDVFDLKESDYDLAKYVTVKQVGTPVGTYPIALTNNGVLATKAELADIPDIDSNLFRGVDYKVASRAGKIYLSNELVEDSEVDIVAEVKNQLKKLVQNTDNSNIISVLTGKTGTNDNFKHITGTGLDDLKKTFNIELDPALSLSVIVNQDAFNYLDTLKDSEGRYLLQPSITAPSGKQLFGAPVIVIANKVLPTDKAGTYRIIIGDFAQAIFLAQKNEVNTQWERFDSYSQGLAVVIRNDYEVVDPDAARIVDITPVAATPAA
1058884..1059174                   PHAGE_Entero_EFRM31_NC_015270: head-tail joining protein; LOCK908_1093; phage(gi327198117)     7e-06               MSVTTEDLKRALRISHNEDDAMLSAYLLTAKQFVISAVDQTLTDENFGDDPRFDFAVSLLAQHWYINRGVDGATYVPDSVVSMIQQLRGVDYATGK
1059284..1059499                   PHAGE_Entero_EFRM31_NC_015270: head-tail adaptor protein; LOCK908_1094; phage(gi327198118)     8e-08               MLSQYLSEVKASVGTKLEDTVTFVIRYDQPETILNSWCIEWQGKQYDIVKLTPDTAKKQWTTIIGKPVANK
1061341..1061353                   attR                                                                                 N/A                 TGGAGGTGAGGAG
